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The Zuluhong quartz-vein-type polymetallic deposit, located in the Alatau area of Western Tianshan, China, is a particular and typical tungsten deposit associated with copper. This paper presents major and trace element analyses of magmatic and altered (i.e, chloritized) biotite from the deposit, in order to identify the source of the magmas and characterize the mineralization physical-chemical condition. Magmatic biotite is Fe-rich and has high Rb/Ba ratios (0.27–9.14), indicative of extensive differentiation of granite. Moreover, magmatic biotite has total rare earth element (∑REE) contents that are 5–10% of the whole-rock contents, shows slight light REE depletion, and negative Ce anomalies. Magmatic biotite is enriched in some large-ion lithophile elements (LILE; e.g., Rb and K) and depleted in some high-field-strength elements (HFSE; e.g., Th and Nb). These geochemical features, coupled with geological evidence, indicate that the Zuluhong intrusion is a highly fractionated I-type granite derived from lower crustal melting. During ore formation, magmatic biotite was partially to totally altered to chlorite due to interaction with ore-forming fluids. The temperature and oxygen fugacity decreased during alteration. The mineralization in the Zuluhong polymetallic deposit can be divided into at least two stages. In the early stage, quartz-vein-type wolframite mineralization formed from Si- and volatile-rich fluids that were derived from fractionated granitic magma. In the later stage, W–Cu ores formed as metal sulfides were dominated by chalcopyrite. The later ore-forming fluids experienced a decrease in temperature and oxygen fugacity as they reacted (i.e, chloritization and lesser silicification) with reducing wall rocks around the contact zone of the intrusion. [ABSTRACT FROM AUTHOR]

Sepiolite (SEP) is a clay mineral with great potential to stabilize soil heavy metals. A two-year field experiment was conducted to explore the optimum use of SEP to immobilize soil Cd and to promote the consumption safety of rice grown in a typical paddy field in Southern China. SEP was applied once or twice over the two-year study at three levels (0.1, 0.5, and 1%, w/w) before rice planting. The results showed that SEP effectively reduced rice grain Cd concentrations by 47–49% in the first year and by 44–50% in the second year due to the residue effect. Application of SEP for two consecutive years reduced the rice grain Cd concentration by up to 75%, achieving a safe level (<0.2 mg kg−1). SEP also reduced Zn concentrations in rice grains (by 6–10%), while the Cd/Zn ratios of rice grains were decreased by 24–72% over the two years, implying it was much safer for consumption. SEP significantly increased the soil pH (0.9–1.8 units) and available phosphorus, and it reduced the soil available Cd (by 20–95%) and Zn concentrations (by 30–99%). In brief, SEP effectively stabilized soil Cd and reduced uptake by rice; the effect was dose-dependent and 0.5% (w/w) was optimum in the present study. The main mechanism of SEP to stabilize soil Cd is the increase in soil pH analogous to liming. This study shows that SEP application can be an efficient way to remediate Cd contaminated rice paddies and fulfill the goal of safe production of rice and thereby reduce the health risks associated with consuming rice. Image 1 • Sepiolite reduced soil Cd availability and translocation in rice plants. • Sepiolite reduced Cd concentration and Cd/Zn ratio in rice grain. • The effect of sepiolite is dose-dependent with 0.5% being the optimal dose. • Sepiolite is effective to remediate Cd contaminated soil and improve rice safety. [ABSTRACT FROM AUTHOR]

Unraveling geographical modes of speciation processes has been a longstanding topic in biogeography. Divergence can be driven by factors operating on multiple spatial scales, such as geographical distance (isolation by distance, IBD), landscape resistance (isolation by resistance, IBR) and environmental heterogeneity (isolation by environment, IBE). However, it is challenging to assess the relative contributions of such factors, which are usually autocorrelated with each other. On the basis of ~294 K nuclear single‐nucleotide polymorphisms from 53 samples, we integrated population genomics, geographical information and environmental variables to delineate genetic differentiation in the common pheasant Phasianus colchicus across a longitudinal gradient in northern China. Generalized dissimilarity modeling (GDM) was used to analyze the relative importance of IBD, IBR and IBE. We found that the common pheasant in northern China was grouped into six genetic clusters, which was consistent with the taxonomic affinities. Genetic diversity changed along the longitudinal gradient, reaching its lowest level at the eastern edge of the Qinghai–Tibetan Plateau (QTP). The spatial pattern of gene flow suggested that the mountains surrounding the QTP and the mountains in central China have acted as geographical barriers impeding common pheasant dispersal. GDM analysis indicated that environmental heterogeneity is the most important driver explaining the lineage divergence, which supports the IBE model. These results suggest that multiple isolation mechanisms shaped genetic diversity and genomic divergence in this wide‐ranging bird species. Together, our results underscore the importance of leveraging genome‐wide variations and ecological modeling to facilitate a deeper understanding of population divergence processes. [ABSTRACT FROM AUTHOR]

The common pheasant (Phasianus colchicus) in the order Galliformes and the family Phasianidae, has 30 subspecies distributed across its native range in the Palearctic realm and has been introduced to Europe, North America, and Australia. It is an important game bird often subjected to wildlife management as well as a model species to study speciation, biogeography, and local adaptation. However, the genomic resources for the common pheasant are generally lacking. We sequenced a male individual of the subspecies torquatus of the common pheasant with the Illumina HiSeq platform. We obtained 94.88 Gb of usable sequences by filtering out low-quality reads of the raw data generated. This resulted in a 1.02 Gb final assembly, which equals the estimated genome size. BUSCO analysis using chicken as a model showed that 93.3% of genes were complete. The contig N50 and scaffold N50 sizes were 178 kb and 10.2 Mb, respectively. All these indicate that we obtained a high-quality genome assembly. We annotated 16,485 protein-coding genes and 123.3 Mb (12.05% of the genome) of repetitive sequences by ab initio and homology-based prediction. Furthermore, we applied a RAD-sequencing approach for another 45 individuals of seven representative subspecies in China and identified 4,376,351 novel single nucleotide polymorphism (SNPs) markers. Using this unprecedented data set, we uncovered the geographic population structure and genetic introgression among common pheasants in China. Our results provide the first high-quality reference genome for the common pheasant and a valuable genome-wide SNP database for studying population genomics and demographic history. [ABSTRACT FROM AUTHOR]

Manganese (Mn) is a critical element in soils, essential to plant growth. Long-term and intensively managed Lei bamboo (Phyllostachys violascens) stands are usually subjected to severe soil acidification and Mn activation. However, Mn migration from topsoil to deep soil induced by severe soil acidification was poorly recognized and studied. The distribution and changes of the total and the operationally defined Mn forms in soil profiles and its potential stress and environmental effect were investigated in a chronosequence of Lei bamboo stands (0, 2, 6, 11, and 16 years of stand age). The results showed that the Mn amount was significantly decreased in topsoil and accumulated in subsoil with the long-term and intensive fertilizer application. Soil exchangeable Mn and superphosphate extractable Mn demonstrated large different variation to total Mn, whereas their sum was largely higher than and highly correlated with 8-hydroxyquinoline (HQN) extractable Mn. Soil organic carbon, pH value, exchangeable bases, and soil redox simultaneously controlled soil Mn depletion. In conclusion, long-term and intensive fertilizer application leads to soil acidification and accelerated soil Mn depletion in bamboo stand soil, promoting Mn accumulation in bamboo shoots. [Display omitted] • Intensive fertilizer application caused bamboo stands acidification seriously. • Soil acidification accelerated Mn leaching and enriching in subsoil. • Severe acidification enlarged the risk of Mn enrichment in bamboo shoot. • Soil organic carbon, pH, and exchangeable bases and soil redox controlled soil Mn's leaching. [ABSTRACT FROM AUTHOR]

This article reports on a study which characterized the genetic variation of the porcine epidemic diarrhea (PED) virus that caused an outbreak in China from 2010 to 2011. Researchers collected 177 tissue samples from pigs from different farms who had diarrhea and compared them with viruses in other outbreaks. By reverse transcription polymerase chain reaction (PCR), researchers learned that a total of 125 samples were confirmed as positive for PED virus.

Background: Vitamin D (VD) insufficiency or deficiency is a frequent comorbidity in Chinese women with postmenopausal osteoporosis (PMO). The present study aimed to investigate 25-hydroxyvitamin D [25(OH) D] improvement and calcium-phosphate metabolism in Chinese PMO patients treated with 70 mg of alendronate sodium and 5600 IU of vitamin D3 (ALN/D5600).Methods: Chinese PMO women (n = 219) were treated with 12-month ALN/D5600 (n = 111) or calcitriol (n = 108). Changes in 25(OH) D at month 12 were post hoc analyzed by the baseline 25 (OH) D status using the longitudinal analysis. The main safety outcome measures included serum calcium and phosphate and 24-h urine calcium, and the repeated measures mixed model was used to assess the frequencies of the calcium-phosphate metabolic disorders.Results: Absolute change in mean serum 25(OH) D level was the greatest in VD-deficient patients and least in VD-sufficient patients at months six and 12 (both, P < 0.01). Serum calcium level remained significantly lower in the ALN/D5600 treatment group than in the calcitriol treatment group throughout the 12 months. Mean 24-h urine calcium slightly increased in the ALN/D5600 treatment group and significantly increased in the calcitriol treatment group (+ 1.1 and + 0.9 mmol/L at months six and 12; both, P < 0.05). Calcitriol treatment was associated with more frequent hypercalciuria at month six (9.4% vs. 18.5%, P = 0.05), but not at month 12 (12.3% vs. 13.0%).Conclusion: Baseline VD status predicted 25(OH) D improvement in PMO patients on 12-month ALN/D5600 treatment. The daily use of 0.25 μg of calcitriol was associated with more frequent hypercalciuria at month six, compared to ALN/5600 treatment, necessitating the safety re-evaluation of calcitriol at a higher dosage. [ABSTRACT FROM AUTHOR]