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We provide a new, annotated genome assembly of Neomicropteryx cornuta , a species of the so-called mandibulate archaic moths (Lepidoptera: Micropterigidae). These moths belong to a lineage that is thought to have split from all other Lepidoptera more than 300 Ma and are consequently vital to understanding the early evolution of superorder Amphiesmenoptera, which contains the order Lepidoptera (butterflies and moths) and its sister order Trichoptera (caddisflies). Using PacBio HiFi sequencing reads, we assembled a highly contiguous genome with a contig N50 of nearly 17 Mb. The assembled genome length of 541,115,538 bp is about half the length of the largest published Amphiesmenoptera genome (Limnephilus lunatus , Trichoptera) and double the length of the smallest (Papilio polytes , Lepidoptera). We find high recovery of universal single copy orthologs with 98.1% of BUSCO genes present and provide a genome annotation of 15,643 genes aided by resolved isoforms from PacBio IsoSeq data. This high-quality genome assembly provides an important resource for studying ecological and evolutionary transitions in the early evolution of Amphiesmenoptera. [ABSTRACT FROM AUTHOR]

Brachycera is a clade with over 80,000 described species and originated from the Mesozoic, and its larvae employ comprehensive feeding strategies. The phylogeny of the lower Brachycera has been studied intensively over the past decades. In order to supplement the lack of genetic data in this important group, we sequenced the complete mitochondrial (mt) genome of Atylotus miser as well as the nearly complete mt genomes of another 11 orthorrhaphous flies. The mt genome of A. miser is 15,858 bp, which is typical of Diptera, with 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes and a 993 bp control region. The rest of the orthorrhaphous mt genomes in our study have the similar structure with A. miser . Additionally, we conducted a phylogenetic analysis of 20 mt genomes using Maximum-likelihood and Bayesian methods in order to reconstruct the evolutionary relationship of Orthorrhapha. The results show that all infraorders of Brachycera are monophyletic, and a relationship of Tabanomorpha + ((Xylophagomorpha + Stratiomyomorpha) + Muscomorpha) has been proposed. Within Xylophagomorpha, Nemestrinoidae forms the sister group of Xylophagidae. [ABSTRACT FROM AUTHOR]

Muscoidea is a significant dipteran clade that includes house flies (Family Muscidae), latrine flies (F. Fannidae), dung flies (F. Scathophagidae) and root maggot flies (F. Anthomyiidae). It is comprised of approximately 7000 described species. The monophyly of the Muscoidea and the precise relationships of muscoids to the closest superfamily the Oestroidea (blow flies, flesh flies etc) are both unresolved. Until now mitochondrial (mt) genomes were available for only two of the four muscoid families precluding a thorough test of phylogenetic relationships using this data source. Here we present the first two mt genomes for the families Fanniidae (Euryomma sp.) (family Fanniidae) and Anthomyiidae (Delia platura (Meigen, 1826)). We also conducted phylogenetic analyses containing of these newly sequenced mt genomes plus 15 other species representative of dipteran diversity to address the internal relationship of Muscoidea and its systematic position. Both maximum-likelihood and Bayesian analyses suggested that Muscoidea was not a monophyletic group with the relationship: (Fanniidae + Muscidae) + ((Anthomyiidae + Scathophagidae) + (Calliphoridae + Sarcophagidae)), supported by the majority of analysed datasets. This also infers that Oestroidea was paraphyletic in the majority of analyses. Divergence time estimation suggested that the earliest split within the Calyptratae, separating (Tachinidae + Oestridae) from the remaining families, occurred in the Early Eocene. The main divergence within the paraphyletic muscoidea grade was between Fanniidae + Muscidae and the lineage ((Anthomyiidae + Scathophagidae) + (Calliphoridae + Sarcophagidae)) which occurred in the Late Eocene. [ABSTRACT FROM AUTHOR]

Sepsid flies (Diptera: Sepsidae) are important model insects for sexual selection research. In order to develop mitochondrial (mt) genome data for this significant group, we sequenced the first complete mt genome of the sepsid fly Nemopoda mamaevi Ozerov, 1997. The circular 15,878 bp mt genome is typical of Diptera, containing all 37 genes usually present in bilaterian animals. We discovered inaccurate annotations of fly mt genomes previously deposited on GenBank and thus re-annotated all published mt genomes of Cyclorrhapha. These re-annotations were based on comparative analysis of homologous genes, and provide a statistical analysis of start and stop codon positions. We further detected two 18 bp of conserved intergenic sequences from tRNAGlu-tRNAPhe and ND1-tRNASer(UCN) across Cyclorrhapha, which are the mtTERM binding site motifs. Additionally, we compared automated annotation software MITOS with hand annotation method. Phylogenetic trees based on the mt genome data from Cyclorrhapha were inferred by Maximum-likelihood and Bayesian methods, strongly supported a close relationship between Sepsidae and the Tephritoidea. [ABSTRACT FROM AUTHOR]

Abstract: A novel biomolecule (urushiol) grafted Degussa P25 hybrid nanoparticle (UP25) was synthesized, and its structure was characterized. The UP25 hybrid nanoparticle showed high photoactivity under visible light irradiation (λ≥420nm). 4,4′-(propane-2,2-diyl)diphenol (Bisphenol A, BPA) can easily approach to UP25 surface through the hydrophobic channels between alkyl groups in urushiol. BPA degradation rate constants were 1.02×10−3 min−1 and 4.96×10−3 min−1 over P25 and UP25, respectively. Radical quenching experiments proved that the superoxide radical anion (O2 −) mediated oxidation pathways were dominant for degradation of BPA. [Copyright &y& Elsevier]

Chloropidae, commonly known as grass flies, represent the most taxonomically diverse family of Diptera Carnoidea, comprising over 3000 described species worldwide. Previous phylogenetic studies of this family have predominantly relied on morphological characters, with mitochondrial genomes being reported in a few species. This study presents 11 newly sequenced mitochondrial genomes (10 Chloropidae and 1 Milichiidae) and provides the first comprehensive comparative analysis of mitochondrial genomes for Chloropidae. Apart from 37 standard genes and the control region, three conserved intergenic sequences across Diptera Cyclorrhapha were identified in all available chloropid mitochondrial genomes. Evolutionary rates within Chloropidae exhibit significant variation across subfamilies, with Chloropinae displaying higher rates than the other three subfamilies. Phylogenetic relationships based on mitochondrial genomes were inferred using maximum likelihood and Bayesian methods. The monophyly of Chloropidae and all four subfamilies is consistently strongly supported, while subfamily relationships within Chloropidae remain poorly resolved, possibly due to rapid evolution. [ABSTRACT FROM AUTHOR]

Simple Summary: The genus Homoneura is the most speciose genus of Lauxaniidae. However, no phylogenetic study of Homoneura has been published using morphological data, despite the high diversity and ecological significance. Therefore, we present the first morphological phylogeny of Homoneura. The monophyly of the genus Homoneura and the subgenus Homoneura is not supported. The monophyly of the subgenera Euhomoneura and Neohomoneura is supported, as well as the sister relationship between the subgenera Chaetohomoneura and Neohomoneura. These results provide a comprehensive framework and information toward future research of this genus. The genus Homoneura comprises over 700 described species in eight known subgenera distributed worldwide and has the highest species richness of Lauxaniidae. Five subgenera and more than 200 species have currently been recorded from China. Despite its high diversity, the monophyly of Homoneura and its subgenera, and the phylogenetic relationships among its subgenera remain to be investigated. One maximum-parsimony tree was generated based on 105 morphological characters scored from 24 species, representing all five subgenera of Homoneura recorded from China. The results did not support the monophyly of the genus Homoneura and subgenus Homoneura. The subgenus Chaetohomoneura is a sister to subgenus Neohomoneura. The monophyly of the subgenera Euhomoneura and Neohomoneura is supported. Much of the current classification of the genus Homoneura needs a revision before taxonomy can reflect natural groupings. [ABSTRACT FROM AUTHOR]

As oxygen is one of the essential reactants in the standard SCR reactions, the ability of restoring and releasing oxygen is an important factor to determine the SCR activity of the catalyst. Ceria catalysts present an innate prospect in SCR reaction because of the facilitated redox cycles from Ce 4+ to Ce 3+ . In the present study, zirconium phosphate @ Ce 0.75 Z 0.25 O 2 (ZP/CZ) catalysts were pre-treated by O 2 , N 2 and H 2 to study the effects of lean-oxygen teatment on the structure, NH 3 /NO x adsorption and activity of catalysts. The catalysts were characterized by activity test, H 2 -TPR, XPS, DRIFT, NO x -TPD and kinetics study. The results showed that H 2 treatment led to deeply reduced catalyst surface, resulting in mainly nitrites instead of nitrates adsorbed on catalyst in NO + O 2 reaction and reduced Brønsted acidity of catalyst, which were responsible for the lowered deNO x activity of H 2 treated catalyst. N 2 treatment had only negligible influence on catalyst compared to O 2 treated catalyst. Ammonium nitrate route was consolidated as possible NH 3 -SCR reaction mechanism over ZP/CZ catalyst by kinetics study. [ABSTRACT FROM AUTHOR]

The genus Dacus is one of the most economically important tephritid fruit flies. The first complete mitochondrial genome (mitogenome) of Dacus species - D. longicornis was sequenced by next-generation sequencing in order to develop the mitogenome data for this genus. The circular 16,253 bp mitogenome is the typical set and arrangement of 37 genes present in the ancestral insect. The mitogenome data of D. longicornis was compared to all the published homologous sequences of other tephritid species. We discovered the subgenera Bactrocera, Daculus and Tetradacus differed from the subgenus Zeugodacus, the genera Dacus, Ceratitis and Procecidochares in the possession of TA instead of TAA stop codon for COI gene. There is a possibility that the TA stop codon in COI is the synapomorphy in Bactrocera group in the genus Bactrocera comparing with other Tephritidae species. Phylogenetic analyses based on the mitogenome data from Tephritidae were inferred by Bayesian and Maximum-likelihood methods, strongly supported the sister relationship between Zeugodacus and Dacus. [ABSTRACT FROM AUTHOR]

A traditionally controversial taxon, the Tipulomorpha has been frequently discussed with respect to both its familial composition and relationships with other Nematocera. The interpretation of internal relationships within the Tipuloidea, which include the Tipulidae sensu stricto, Cylindrotomidae, Pediciidae and Limoniidae, is also problematic. We sequenced the first complete mitochondrial (mt) genome of Symplecta hybrida (Meigen, 1804), which belongs to the subfamily Chioneinae of family Limoniidae, and another five nearly complete mt genomes from the Tipuloidea. We did a comparative analysis of these mt genomics and used them, along with some other representatives of the Nematocera to construct phylogenetic trees. Trees inferred by Bayesian methods strongly support a sister-group relationship between Trichoceridae and Tipuloidea. Tipulomorpha are not supported as the earliest branch of the Diptera. Furthermore, phylogenetic trees indicate that the family Limoniidae is a paraphyletic group. [ABSTRACT FROM AUTHOR]

The Plecoptera (stoneflies) is a hemimetabolous order of insects, whose larvae are usually used as indicators for fresh water biomonitoring. Herein, we describe the complete mitochondrial (mt) genome of a stonefly species, namely Acroneuria hainana Wu belonging to the family Perlidae. This mt genome contains 13 PCGs, 22 tRNA-coding genes and 2 rRNA-coding genes that are conserved in most insect mt genomes, and it also has the identical gene order with the insect ancestral gene order. However, there are three special initiation codons of ND1 , ND5 and COI in PCGs: TTG, GTG and CGA, coding for L, V and R, respectively. Additionally, the 899-bp control region, with 73.30% A + T content, has two long repeated sequences which are found at the 3′-end closing to the tRNA Ile gene. Both of them can be folded into a stem-loop structure, whose adjacent upstream and downstream sequences can be also folded into stem-loop structures. It is presumed that the four special structures in series could be associated with the D-loop replication. It might be able to adjust the replication speed of two replicate directions. [ABSTRACT FROM AUTHOR]