100 results on '"Michael Kopp"'
Search Results
2. Apparent evolutionary maladaptation and inference from reciprocal transplants
- Author
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Gregor F. Fussmann and Michael Kopp
- Subjects
evolutionary dynamics ,maladaptation ,local adaptation ,reciprocal transplant ,relative fitness ,quantitative genetics model ,Evolution ,QH359-425 ,Ecology ,QH540-549.5 - Abstract
In rapidly changing environments populations and species face a challenge to remain adapted and avoid extinction or replacement by fitter types. If evolutionary adaptation cannot keep pace with the speed of environmental change populations will exhibit varying degrees of maladaptation with respect to the current environmental state. Reciprocal transplant experiments are an established method for comparatively assessing the relative fitness of multiple populations in their respective environments. Here we use a quantitative-genetics model to show that inference from reciprocal transplants can be misleading when applied to populations that are in the process of adapting to environmental change. Specifically, we analyze (a) the case of two populations adapting to two different fitness optima starting from a suboptimal initial state and (b) the case of two populations attempting to adapt to changing trait targets that move at different speeds. We find that, in both scenarios, populations can undergo transitional fitness states that, if reciprocal transplant experiments were performed, would lead to the conclusion of (local) non-adaptation or maladaptation. This signature of apparent maladaptation occurs although both populations strictly follow an evolutionary trajectory dictated by the principle of fitness increase over time. Our results have implications for potential patterns of latitudinal replacement of populations/species with ongoing global change and might help shed light on the surprising finding (based on reciprocal transplants) that many populations in the wild fail to show a strong signature of adaptation to their local environments.
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- 2023
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3. Handlungsfelder und attraktive Lösungen für Open Educational Resources im österreichischen Hochschulraum
- Author
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Martin Ebner, Raman Ganguly, Ortrun Gröblinger, Claudia Hackl, Daniel Handle-Pfeiffer, Michael Kopp, Kristina Neuböck, Alexander Schmölz, Sandra Schön, and Charlotte Zwiauer
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Education - Abstract
Open Education Austria Advanced trägt zur Sichtbarmachung und Nutzung von Synergien aus Open Science und Open Education bei, um einen Beitrag zur freien Nutzung von Bildungsinhalten aus der Hochschullehre zu leisten und offene Praktiken analog zur Forschung zu etablieren (Open Access, Open Data). Es wird an attraktiven Lösungen für Open Educational Resources (OER) gearbeitet, welche u. a. den OERhub als Suchportal für OER aus dem gesamten Hochschulraum sowie den Aufbau lokaler OER-Repositorien, einer nationalen Zertifizierungsstelle und ein Qualifizierungsangebot umfassen. Der gezielte Wissenstransfer aus dem Projekt in die österreichischen Hochschulen an der Schnittstelle von Bibliotheken, Zentralen IT-Services und Einrichtungen für digitale Lehre stellt ein weiteres Handlungsfeld dar. Dieses Projekt wurde am 1. Juni 2023 im Rahmen einer Online-Veranstaltung des BMBWF präsentiert. Die Präsentationsunterlagen finden Sie hier.
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- 2023
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4. Attraktive Lösungen für Open Educational Resources aus dem österreichischen Hochschulraum – ein Werkstattbericht von Open Education Austria Advanced
- Author
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Claudia Hackl, Martin Ebner, Raman Ganguly, Ortrun Gröblinger, Daniel Handle-Pfeiffer, Michael Kopp, Alexander Schmölz, Sandra Schön, and Charlotte Zwiauer
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Open Education ,Open Educational Resources ,Digitalisierungsprojekt ,österreichischer Hochschulraum ,Schnittstellenarbeit ,Bibliography. Library science. Information resources - Abstract
Open Education Austria Advanced ist ein Projekt mehrerer österreichischer Universitäten, das attraktive Lösungen für OER als Gesamtprojektziel verfolgt. Diese äußern sich im Rahmen eines OERhub (zentrale Meta-Suchmaschine für OER aus dem gesamten öst. Hochschulraum), dem Aufbau von lokalen OER-Repositorien und einer nationalen Zertifizierungsstelle mit passenden Qualifizierungsangeboten. Der weitreichende Wissenstransfer des Projekts in die österreichischen Hochschulen an der Schnittstelle von Bibliotheken, Zentralen IT-Services und Teaching & Learning Zentren trägt zur Sichtbarmachung und Nutzung von Synergien aus Open Science und Open Education bei, um einen Beitrag zur freien Nutzung von Bildungsinhalten aus der (Hochschul-)Lehre zu leisten und offene Praktiken analog zur Forschung zu etablieren (Open Access, Open Data).
- Published
- 2022
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5. Safe application of extensive radiotherapy to a cardiac resynchronization device
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Christiana Schernthaner, Michael Kopp, Karin Dagn, Lukas Rettenbacher, Lukas Weiss, Damian Meyersburg, Mathias‐Christoph Brandt, Uta C. Hoppe, and Bernhard Strohmer
- Subjects
Resynchronization therapy ,Radiotherapy ,Cardiomyopathy ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Patients with cardiac implantable electronic devices undergoing radiotherapy (RT) are prone to the risk of device failure. Guidelines and manufacturer's instructions are lacking practical recommendations for cumulative radiation doses to pacemakers or implantable cardioverter defibrillators. The present case demonstrates the effect of RT of a Merkel cell carcinoma near the location of a cardiac resynchronization therapy pacemaker. Despite guideline recommendations, surgical relocation or de novo implantation of the device on the contralateral side was avoided to prevent the dissemination of tumour cells, inflammation, and wound healing complications. A total dose of 47.25 Gy applied in very close proximity to the cardiac resynchronization therapy pacemaker was carried out safely without jeopardizing the patient and any device malfunction during and after treatment within >1.5 years of follow‐up period. The present case demonstrates that high‐dose RT near to a cardiac resynchronization therapy device can be carried out safely. Special precautions during RT as well as close device follow‐up interrogations are mandatory. Large‐scale studies are needed for the true frequency of adverse events.
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- 2020
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6. OER Certification of Individuals and Organisations in Higher Education: Implementations Worldwide
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Sandra Schön, Martin Ebner, Elfriede Berger, Gerhard Brandhofer, Ortrun Gröblinger, Tanja Jadin, Michael Kopp, Hans-Peter Steinbacher, and Charlotte Zwiauer
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open educational resources ,training ,capacity building ,certification ,universities ,Special aspects of education ,LC8-6691 - Abstract
The initiative “Open Education Austria Advanced” develops infrastructures for open educational resources (OER) in higher education. One part is the development of certification procedures to point out OER competencies of teachers in higher education and OER activities at Austrian universities. We present the results of our research on existing OER certification procedures from the German and English-speaking world. We started by searching in the OER World Map and there listed OER policies of universities worldwide and then tried to find examples for existing OER certification for people and organisations. There are several examples for certifications of persons such as in MOOCs on OER, university training on OER or the Creative Commons certification itself. We found only a few references of (partly) OER certificates for organisations. The publication then describes ambitions towards openness of the OER movement regarding possible certification procedures, namely open development, open content, open assessment and open certificates.
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- 2021
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7. Instabilities in a Non-Uniformly Rotating Medium with Stratification of the Temperature in an External Uniform Magnetic Field
- Author
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Michael Kopp, Anatoly Tur, and Volodymyr Yanovsky
- Subjects
magnetorotational instability ,Rayleigh-Benard convection ,nonlinear theory ,Ginzburg-Landau equation ,Physics ,QC1-999 - Abstract
In this paper the stability of the non-uniformly rotating cylindrical plasma in the axial uniform magnetic field with the vertical temperature gradient is investigated. In the approximation of geometrical optics a dispersion equation for small axisymmetric perturbations is obtained with the effects of viscosity, ohmic and heat conductive dissipation taken into account. The stability criteria for azimuthal plasma flows are obtained in the presence of the vertical temperature gradient and the constant magnetic field. The Rayleigh-Benard problem for stationary convection in the non-uniformly rotating layer of the electrically conducting fluid in the axial uniform magnetic field is considered. In the linear theory of stationary convection the critical value of the Rayleigh number subject to the profile of the inhomogeneous rotation (Rossby number) is obtained. It is shown that the negative values of the Rossby number have a destabilizing effect, since the critical Rayleigh number becomes smaller, than in the case of the uniform rotation , or of the rotation with positive Rossby numbers . To describe the nonlinear convective phenomena the local Cartesian coordinate system was used, where the inhomogeneous rotation of the fluid layer was represented as the rotation with a constant angular velocity and azimuthal shear with linear dependence on the coordinate. As a result of applying the method of perturbation theory for the small parameter of supercriticality of the stationary Rayleigh number a nonlinear Ginzburg-Landau equation was obtaned. This equation describes the evolution of the finite amplitude of perturbations by utilizing the solution of the Ginzburg-Landau equation. It is shown that the weakly nonlinear convection based on the equations of the six-mode Lorentz model transforms into the identical Ginzburg-Landau equation. By utilizing the solution of the Ginzburg-Landau equation, we determined the dynamics of unsteady heat transfer for various profiles of the angular velocity of the rotation of electrically conductive fluid.
- Published
- 2019
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8. Editorial: Seamless Learning - Lernen überall und jederzeit
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Herwig Rehatschek, Ursula Leopold, Martin Ebner, Michael Kopp, Patrick Schweighofer, Manfred Rechberger, Martin Teufel, and Anastasia Sfiri
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Education - Abstract
12.08.2016 | Herwig Rehatschek, Ursula Leopold, Martin Ebner, Michael Kopp, Patrick Schweighofer, Manfred Rechberger, Martin Teufel & Anastasia Sfiri (Graz)
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- 2016
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9. Editorial: E-Learning-Strategien für die Hochschullehre
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Sabine Seufert, Martin Ebner, Michael Kopp, and Bettina Schlass
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Education - Abstract
27.04.2015 | Sabine Seufert (St. Gallen), Martin Ebner, Michael Kopp (Graz) & Bettina Schlass (Amsterdam)
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- 2015
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10. Entwicklung der E-Learning-Strategie für die Universität Graz
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Michael Kopp and Martin Polaschek
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E-Learning-Strategie ,Innovationsprozess ,Strategieentwicklung ,Education - Abstract
Die Universität Graz hat im Jahr 2014 mittels der Kombination eines Top-Down- und Bottom-Up-Ansatzes eine E-Learning-Strategie entwickelt und diese durch den Beschluss des Rektorates zu einem institutionalisierten Bestandteil der strategischen Überlegungen der Universität gemacht. Der vorliegende Beitrag beschreibt zunächst die Ausgangslage und die Rahmenbedingungen, die zur Entwicklung der Strategie führten. Im zweiten Teil werden allgemeine Parameter zur Strategieentwicklung unter besonderer Berücksichtigung des Einsatzes neuer Medien erörtert. Daran schließen die Beschreibung der konkreten Strategieentwicklung sowie ein Überblick über die wesentlichen Inhalte der E-Learning-Strategie an. Abschließend wird ein Ausblick über zukünftige Entwicklungen und Herausforderungen bei der Strategieumsetzung gegeben. 27.04.2015 | Michael Kopp & Martin Polaschek (Graz)
- Published
- 2015
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11. Editorial: Videos in der (Hochschul-)Lehre
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Thomas Antretter, Johannes Dorfinger, Martin Ebner, Michael Kopp, Walther Nagler, Jutta Pauschenwein, Michael Raunig, Manfred Rechberger, Herwig Rehatschek, Patrick Schweighofer, Reinhard Staber, and Martin Teufel
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Education - Abstract
24.04.2014 | Thomas Antretter, Johannes Dorfinger, Martin Ebner, Michael Kopp, Walther Nagler, Jutta Pauschenwein, Michael Raunig, Manfred Rechberger, Herwig Rehatschek, Patrick Schweighofer, Reinhard Staber & Martin Teufel (Graz)
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- 2014
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12. Using large-scale structure data and a halo model to constrain generalized dark matter
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Daniel B Thomas, Michael Kopp, and Katarina Markovič
- Published
- 2019
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13. A New 6D Chaotic Generator: Computer Modelling and Circuit Design
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Michael Kopp and Andrii Kopp
- Subjects
Mechanics of Materials ,Mechanical Engineering ,Electrical and Electronic Engineering ,Civil and Structural Engineering - Abstract
The objective of this study aims at using the Matlab-Simulink environment and the LabVIEW software environment to build computer models of a six-dimensional (6D) chaotic dynamic system. For the fixed system’s parameters, the spectrum of Lyapunov exponents and the Kaplan-York dimension are calculated. The presence of two positive Lyapunov exponents demonstrates the hyperchaotic behavior of the system. The fractional Kaplan-York dimension indicates the fractal structure of strange attractors. An active control method is extended to achieve global chaotic synchronization of two identical novel 6D chaotic systems with unknown system parameters. Based on the results obtained in Matlab-Simulink and LabVIEW models, a chaotic signal generator for the 6D chaotic system is implemented in the MultiSim environment. The experimental results show that the chaotic behavior simulation in the MultiSim environment is similar to those in the Matlab-Simulink and LabVIEW models. The simulation results demonstrate that the Pecora-Carroll method is a simple way of chaotic masking and signal decoding.
- Published
- 2022
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14. Landslide4Sense: Reference Benchmark Data and Deep Learning Models for Landslide Detection
- Author
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Omid Ghorbanzadeh, Yonghao Xu, Pedram Ghamisi, Michael Kopp, and David Kreil
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FOS: Computer and information sciences ,Computer Vision and Pattern Recognition (cs.CV) ,Image and Video Processing (eess.IV) ,FOS: Electrical engineering, electronic engineering, information engineering ,Computer Science - Computer Vision and Pattern Recognition ,General Earth and Planetary Sciences ,Electrical Engineering and Systems Science - Image and Video Processing ,Electrical and Electronic Engineering - Abstract
This study introduces \textit{Landslide4Sense}, a reference benchmark for landslide detection from remote sensing. The repository features 3,799 image patches fusing optical layers from Sentinel-2 sensors with the digital elevation model and slope layer derived from ALOS PALSAR. The added topographical information facilitates the accurate detection of landslide borders, which recent researches have shown to be challenging using optical data alone. The extensive data set supports deep learning (DL) studies in landslide detection and the development and validation of methods for the systematic update of landslide inventories. The benchmark data set has been collected at four different times and geographical locations: Iburi (September 2018), Kodagu (August 2018), Gorkha (April 2015), and Taiwan (August 2009). Each image pixel is labelled as belonging to a landslide or not, incorporating various sources and thorough manual annotation. We then evaluate the landslide detection performance of 11 state-of-the-art DL segmentation models: U-Net, ResU-Net, PSPNet, ContextNet, DeepLab-v2, DeepLab-v3+, FCN-8s, LinkNet, FRRN-A, FRRN-B, and SQNet. All models were trained from scratch on patches from one quarter of each study area and tested on independent patches from the other three quarters. Our experiments demonstrate that ResU-Net outperformed the other models for the landslide detection task. We make the multi-source landslide benchmark data (Landslide4Sense) and the tested DL models publicly available at \url{https://www.iarai.ac.at/landslide4sense}, establishing an important resource for remote sensing, computer vision, and machine learning communities in studies of image classification in general and applications to landslide detection in particular.
- Published
- 2022
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15. Development of an Austrian OER Certification for Higher Education Institutions and Their Employees
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Sandra Schön, Martin Ebner, Elfriede Berger, Gerhard Brandhofer, Sarah Edelsbrunner, Ortrun Gröblinger, Claudia Hackl, Tanja Jadin, Michael Kopp, Kristina Neuböck, Judith Proinger, Alexander Schmölz, and Hans-Peter Steinbacher
- Abstract
The “Forum Neue Medien in der Lehre Austria” (fnma) is responsible for the development and introduction of a procedure to attest open educational resources (OER) competences and OER activities in higher education. The aim is to develop and implement a convincing and recognized procedure that succeeds in sustainably promoting and making visible OER activities and OER competences at Austria’s higher education institutions. Within this paper, the development of the Austrian OER certification approach, in other words its framework, will be addressed. A working plan and first results will be presented; among others, the competence framework and its compatibility with existing frameworks.
- Published
- 2023
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16. A new 6D discrete system and its Arduino Uno implementation with LED visualization
- Author
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Michael Kopp
- Abstract
In this paper, to demonstrate the chaotic behavior of a new 6D discrete system, the modern Matlab-Simulink software environment was used. We have obtained a discrete 6D chaotic system by the Euler method from a continuous 6D system of dynamic equations. In the Matlab-Simulink environment, models for continuous and discrete 6D systems of equations were created, and the results were identical. To demonstrate the synchronization of two unidirectional connected continuous and discrete 6D systems, Simulink models were proposed. A discrete 6D system was applied for the chaotic masking of a narrow-band harmonic signal and image encryption. For visualizing and practical realization of the new chaotic discrete system we used Arduino Uno board and six light-emitting diodes (LEDs). The programming code and connecting technique are also shown. The program code was debugged into the free Arduino simulation environment such as Tinkercad. Compiling hex. file in the program software Arduino IDE allows us to simulate a 6D chaotic system using the Arduino Uno microcontroller in the Proteus 8 environment.
- Published
- 2022
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17. When quantum corrections alter the predictions of classical field theory for scalar field dark matter
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Andrew Eberhardt, Michael Kopp, and Tom Abel
- Subjects
High Energy Physics - Phenomenology ,High Energy Physics - Phenomenology (hep-ph) ,FOS: Physical sciences - Abstract
We investigate the timescale on which quantum corrections alter the predictions of classical field theory for scalar field dark matter. This is accomplished by including second order terms in the evolution proportional to the covariance of the field operators. When this covariance is no longer small compared to the mean field value, we say that the system has reached the ``quantum breaktime" and the predictions of classical field theory will begin to differ from those of the full quantum theory. While holding the classical field theory evolution fixed, we determine the change of the quantum breaktime as total occupation number is increased. This provides a novel numerical estimation of the breaktime based at high occupations $n_{tot}$ and mode number $N=256$. We study the collapse of a sinusoidal overdensity in a single spatial dimension. We find that the breaktime scales as $\log(n_{tot})$ prior to shell crossing and then then as a powerlaw following the collapse. If we assume that the collapsing phase is representative of halos undergoing nonlinear growth, this implies that the quantum breaktime of typical systems may be as large as $\sim 30$ of dynamical times even at occupations of $n_{tot}\sim 10^{100}$., to be submitted to Phys Rev D
- Published
- 2022
18. Genetics of adaptation and fitness landscapes: from toy models to testable quantitative predictions
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Thomas Bataillon, Thomas H. G. Ezard, Michael Kopp, Joanna Masel, Aarhus University [Aarhus], Institut de Mathématiques de Marseille (I2M), and Aix Marseille Université (AMU)-École Centrale de Marseille (ECM)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
Models, Genetic ,[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE] ,Mutation ,Genetics ,Genetic Fitness ,General Agricultural and Biological Sciences ,Adaptation, Physiological ,Biological Evolution ,ComputingMilieux_MISCELLANEOUS ,Ecology, Evolution, Behavior and Systematics - Abstract
The “Fitness landscape” metaphor is central to our ability to conceptualize how mutations generate new phenotypes and, in turn, variation in fitness. This metaphor has been instrumental in shaping collective mental pictures of how evolution proceeds, where the limits to innovation lie, and how adaptation emerges as a consequence of natural selection acting on phenotypic differences that are at least partly heritable.
- Published
- 2022
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19. Hyperchaos, adaptive control, synchronization, and electronic circuit design of a novel 6D hyperchaotic convective dynamo system
- Author
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Michael Kopp
- Subjects
Nonlinear Sciences::Chaotic Dynamics - Abstract
In this work, a new nonlinear dynamic (6D) system of equations is proposed that describes the process of magnetic field generation. This system of equations is an alternative to the Rikitake dynamo system describing chaotic magnetic field reversals.The behavior of the new dynamical system is studied by analyzing the stability of equilibrium points. For fixed parameters of the 6D dynamical system, the spectrum of Lyapunov exponents and the Kaplan-York dimension are calculated. The presence of two positive Lyapunov exponents demonstrates the hyperchaotic behavior of the 6D dynamical system. The fractional Kaplan-York dimension indicates the fractal structure of strange attractors. We have shown that an adaptive controller is used to stabilize the novel 6D chaotic system with unknown system parameters. An active control method is derived to achieve global chaotic synchronization of two identical novels 6D chaotic systems with unknown system parameters. Based on the results obtained in Matlab-Simulink and LabVIEW models, a chaotic signal generator for the 6D chaotic system is implemented in the Multisim environment. The results of chaotic behavior simulation in the Multisim environment show similar behavior when comparing simulation results in Matlab-Simulink and LabVIEW models.
- Published
- 2022
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20. Computer Modelling and Circuit Design of a new 8D Chaotic System
- Author
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Andrii Kopp and Michael Kopp
- Subjects
Nonlinear Sciences::Chaotic Dynamics - Abstract
In this paper, Matlab-Simulink and LabView models are constructed for a new nonlinear dynamic system of equations in an eight-dimensional (8D) phase space. For fixed parameters of the 8D dynamical system, the spectrum of Lyapunov exponents and the Kaplan-York dimension are calculated. The presence of two positive Lyapunov exponents demonstrates the hyperchaotic behavior of the 8D dynamical system. The fractional Kaplan-York dimension indicates the fractal structure of strange attractors. We have shown that an adaptive controller is used to stabilize the novel 8D chaotic system with unknown system parameters. An active control method is derived to achieve global chaotic synchronization of two identical novel 8D chaotic systems with unknown system parameters. Based on the results obtained in Matlab-Simulink and LabView models, a chaotic signal generator for the 8D chaotic system is implemented in the Multisim environment. The results of chaotic behavior simulation in the Multisim environment show similar behavior when comparing simulation results in Matlab-Simulink and LabView models.
- Published
- 2022
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21. 20-Year Follow-up of 52 Patients with Advanced Tumors of the Anterior Skull Base Treated with Intraoperative Radiotherapy
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Michael Kopp, Gerd Fastner, Christoph Gaisberger, and Felix Sedlmayer
- Published
- 2022
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22. On inference of quantization from gravitationally induced entanglement
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Vasileios Fragkos, Michael Kopp, and Igor Pikovski
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Quantum Physics ,Computational Theory and Mathematics ,Computer Networks and Communications ,FOS: Physical sciences ,General Relativity and Quantum Cosmology (gr-qc) ,Electrical and Electronic Engineering ,Physical and Theoretical Chemistry ,Quantum Physics (quant-ph) ,Condensed Matter Physics ,General Relativity and Quantum Cosmology ,Atomic and Molecular Physics, and Optics ,Electronic, Optical and Magnetic Materials - Abstract
Observable signatures of the quantum nature of gravity at low energies have recently emerged as a promising new research field. One prominent avenue is to test for gravitationally induced entanglement between two mesoscopic masses prepared in spatial superposition. Here we analyze such proposals and what one can infer from them about the quantum nature of gravity, as well as the electromagnetic analogues of such tests. We show that it is not possible to draw conclusions about mediators: even within relativistic physics, entanglement generation can equally be described in terms of mediators or in terms of non-local processes -- relativity does not dictate a local channel. Such indirect tests therefore have limited ability to probe the nature of the process establishing the entanglement as their interpretation is inherently ambiguous. We also show that cosmological observations already demonstrate some aspects of quantization that these proposals aim to test. Nevertheless, the proposed experiments would probe how gravity is sourced by spatial superpositions of matter, an untested new regime of quantum physics., 23 pages, 3 figures
- Published
- 2022
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23. On the single classical field description of interacting scalar fields
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Andrew Eberhardt, Alvaro Zamora, Michael Kopp, and Tom Abel
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High Energy Physics - Phenomenology ,High Energy Physics - Phenomenology (hep-ph) ,FOS: Physical sciences ,General Relativity and Quantum Cosmology (gr-qc) ,Computational Physics (physics.comp-ph) ,Physics - Computational Physics ,General Relativity and Quantum Cosmology - Abstract
We test the degree to which interacting Bosonic systems can be approximated by a classical field as total occupation number is increased. This is done with our publicly available code repository, \href{https://github.com/andillio/QIBS}{QIBS}, a massively parallel solver for these systems. We use a number of toy models well studied in the literature and track when the classical field description admits quantum corrections, called the quantum breaktime. This allows us to test claims in the literature regarding the rate of convergence of these systems to the classical evolution. We test a number of initial conditions, including coherent states, number eigenstates, and field number states. We find that of these initial conditions, only number eigenstates do not converge to the classical evolution as occupation number is increased. We find that systems most similar to scalar field dark matter exhibit a logarithmic enhancement in the quantum breaktime with total occupation number. Systems with contact interactions or with field number state initial conditions, and linear dispersions, exhibit a power law enhancement. Finally, we find that the breaktime scaling depends on both model interactions and initial conditions., To be submitted to Phys Rev D
- Published
- 2021
24. Field moment expansion method for interacting Bosonic systems
- Author
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Andrew Eberhardt, Tom Abel, Michael Kopp, and Alvaro Zamora
- Subjects
Physics ,Quantum Physics ,Cosmology and Nongalactic Astrophysics (astro-ph.CO) ,Field (physics) ,Numerical analysis ,Scalar field dark matter ,Order (ring theory) ,FOS: Physical sciences ,Python (programming language) ,Computational Physics (physics.comp-ph) ,Mean field theory ,Quantum system ,Statistical physics ,Quantum Physics (quant-ph) ,Quantum ,computer ,Physics - Computational Physics ,computer.programming_language ,Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
We introduce a numerical method and python package, https://github.com/andillio/CHiMES, that simulates quantum systems initially well approximated by mean field theory using a second order extension of the classical field approach. We call this the field moment expansion method. In this way, we can accurately approximate the evolution of first and second field moments beyond where the mean field theory breaks down. This allows us to estimate the quantum breaktime of a classical approximation without any calculations external to the theory. We investigate the accuracy of the field moment expansion using a number of well studied quantum test problems. Interacting Bosonic systems similar to scalar field dark matter are chosen as test problems. We find that successful application of this method depends on two conditions: the quantum system must initially be well described by the classical theory, and that the growth of the higher order moments be hierarchical., Accepted to Phys. Rev. D
- Published
- 2021
25. Nonclassicality of axion-like dark matter through gravitational self-interactions
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Michael Kopp, Vasileios Fragkos, and Igor Pikovski
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Condensed Matter - Other Condensed Matter ,High Energy Physics - Phenomenology ,Quantum Physics ,Cosmology and Nongalactic Astrophysics (astro-ph.CO) ,High Energy Physics - Phenomenology (hep-ph) ,FOS: Physical sciences ,Quantum Physics (quant-ph) ,Other Condensed Matter (cond-mat.other) ,Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
Axion-like particles (ALPs) are promising dark matter candidates. They are typically described by a classical field, motivated by large phase space occupation numbers. Here we show that such a description is accompanied by a quantum effect: squeezing due to gravitational self-interactions. For a typical QCD axion today, the onset of squeezing is reached on $\mathrm{\mu s}$-scales and grows over millennia. Thus within the usual models based on the classical Schr\"odinger-Poisson equation, a type of Gross-Pitaevskii equation, any viable ALP is nonclassical. We also show that squeezing may be relevant on the scales of other self-gravitating systems such as galactic haloes, or solitonic cores. Conversely, our results highlight the incompleteness and limitations of the classical single field description of ALPs., Comment: 13 pages, 3 figures, extended discussion and minor changes
- Published
- 2021
26. Gas-filled pore in bounded particle
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Michael Kopp and Vladimir Yanovsky
- Subjects
General Materials Science - Published
- 2020
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27. Digital gestütztes Lehren mittels innovativem MOOC-Konzept
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Michael Kopp, Andreas Bollin, Martin Ebner, Simone Adams, and Martin Teufel
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0301 basic medicine ,Atmospheric Science ,Lehrerausbildung ,Physics and Astronomy (miscellaneous) ,E-learning (theory) ,Use of media ,Medicine (miscellaneous) ,Digitale Medien ,Blended Learning ,E-learning ,0302 clinical medicine ,Virtual learning ,Health Information Management ,Computer Science (miscellaneous) ,General Materials Science ,Österreich ,Hochschulbildung ,Waste Management and Disposal ,Water Science and Technology ,Mass media ,Higher education lecturing ,Global and Planetary Change ,Mediendidaktik ,Digitalization ,Massenmedien ,Condensed Matter Physics ,Pollution ,Agricultural and Biological Sciences (miscellaneous) ,Computer Science Applications ,Electronic, Optical and Magnetic Materials ,Computational Theory and Mathematics ,030220 oncology & carcinogenesis ,Medieneinsatz ,Austria ,Virtual learning environment ,Pulmonary and Respiratory Medicine ,Digitalisierung ,Lehramtsstudiengang ,Higher education ,Teacher education ,Teachers' training ,Computer Networks and Communications ,Erziehung, Schul- und Bildungswesen ,Materials Science (miscellaneous) ,Biomedical Engineering ,Media didactics ,Health Informatics ,Management, Monitoring, Policy and Law ,Biology ,Biochemistry, Genetics and Molecular Biology (miscellaneous) ,Education ,Technologieunterstütztes Lernen ,03 medical and health sciences ,University teaching ,ddc:370 ,Medienpädagogik ,Mathematics education ,Environmental Chemistry ,Lehrerbildung ,Electrical and Electronic Engineering ,Hochschulforschung und Hochschuldidaktik ,business.industry ,Hochschule ,Public Health, Environmental and Occupational Health ,Higher education institute ,Statistical and Nonlinear Physics ,Deployment of media ,Cell Biology ,Preservice Teacher Education ,Blended learning ,Teacher training ,030104 developmental biology ,Space and Planetary Science ,University level of education ,Technology uses in education ,Hochschullehre ,business ,Developmental Biology ,Food Science ,University lecturing - Abstract
Die Autoren beleuchten hochschulische Bildungsmöglichkeiten mit Massive Open Online Cours (MOOC) von der Erstellung bis zur Durchführung derartiger Kurse. Dabei scheinen die beliebige Wiederholbarkeit von Vorlesungen und die dauernde Abrufbarkeit von Lektionen wesentlich zum Erfolg des Formats beizutragen. (DIPF/Orig.)
- Published
- 2020
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28. Dark Matter properties through cosmic history
- Author
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Michael Kopp, S. Ilić, Constantinos Skordis, Daniel B. Thomas, Laboratoire d'Etude du Rayonnement et de la Matière en Astrophysique (LERMA (UMR_8112)), Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire de Paris, Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-CY Cergy Paris Université (CY), Institut de recherche en astrophysique et planétologie (IRAP), Institut national des sciences de l'Univers (INSU - CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), and Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
Physics ,[PHYS]Physics [physics] ,Cosmology and Nongalactic Astrophysics (astro-ph.CO) ,010308 nuclear & particles physics ,Dark matter ,Cosmic microwave background ,FOS: Physical sciences ,Astrophysics ,Astrophysics::Cosmology and Extragalactic Astrophysics ,Parameter space ,Lambda ,01 natural sciences ,Redshift ,Baryon ,symbols.namesake ,13. Climate action ,Speed of sound ,0103 physical sciences ,symbols ,010306 general physics ,[PHYS.ASTR]Physics [physics]/Astrophysics [astro-ph] ,Hubble's law ,Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
We perform the first test of dark matter (DM) stress-energy evolution through cosmic history, using cosmic microwave background measurements supplemented with baryon acoustic oscillation data and the Hubble Space Telescope key project data. We constrain the DM equation of state (EoS) in 8 redshift bins, and its sound speed and (shear) viscosity in 9 redshift bins, finding no convincing evidence for non-$\Lambda$CDM values in any of the redshift bins. Despite this enlarged parameter space, the sound speed and viscosity are constrained relatively well at late times (due to the inclusion of CMB lensing), whereas the EoS is most strongly constrained around recombination. These results constrain for the first time the level of "coldness" required of DM across various cosmological epochs at both the background and perturbative levels. We show that simultaneously allowing time dependence for both the EoS and sound speed parameters shifts the posterior of the DM abundance before recombination to a higher value, while keeping the present day DM abundance similar to the $\Lambda$CDM value. This shifts the posterior for the present day Hubble constant compared to $\Lambda$CDM, suggesting that DM with time-dependent parameters is well-suited to explore possible solutions to persistent tensions within the $\Lambda$CDM model. We perform a detailed comparison with our previous study involving a vanishing sound speed and viscosity using the same datasets in order to explain the physical mechanism behind these shifts., Comment: 20 pages, 10 figures, 5 tables; updated to match version published in PRD
- Published
- 2020
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29. Using large scale structure data and a halo model to constrain Generalised Dark Matter
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Katarina Markovič, Michael Kopp, and Daniel B. Thomas
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Physics ,Cosmology and Nongalactic Astrophysics (astro-ph.CO) ,Structure formation ,010308 nuclear & particles physics ,Matter power spectrum ,Dark matter ,Cosmic microwave background ,FOS: Physical sciences ,Astronomy and Astrophysics ,General Relativity and Quantum Cosmology (gr-qc) ,Astrophysics::Cosmology and Extragalactic Astrophysics ,01 natural sciences ,General Relativity and Quantum Cosmology ,Space and Planetary Science ,0103 physical sciences ,Statistical physics ,Halo ,Neutrino ,010303 astronomy & astrophysics ,Weak gravitational lensing ,Free parameter ,Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
Constraints on the properties of the cosmological dark matter have previously been obtained in a model-independent fashion using the Generalised Dark Matter (GDM) framework. Here we extend that work in several directions: We consider the inclusion of WiggleZ matter power spectrum data, and show that this improves the constraints on the two perturbative GDM parameters, $c^2_s$ and $c^2_\text{vis}$, by a factor of 3, for a conservative choice of wavenumber range. A less conservative choice can yield an improvement of up to an order of magnitude compared to previous constraints. In order to examine the robustness of this result we develop a GDM halo model to explore how non-linear structure formation could proceed in this framework, since currently GDM has only been defined perturbatively and only linear theory has been used when generating constraints. We then examine how the halo model affects the constraints obtained from the matter power spectrum data. The less-conservative wavenumber range shows a significant difference between linear and non-linear modelling, with the latter favouring GDM parameters inconsistent with $\Lambda$CDM, underlining the importance of careful non-linear modelling when using this data. We also use this halo model to establish the robustness of previously obtained constraints, particularly those that involve weak gravitational lensing of the cosmic microwave background. Additionally, we show how the inclusion of neutrino mass as a free parameter affects previous constraints on the GDM parameters., Comment: 27 pages, 10 figures. Updated to match published version: a few minor clarifications on the choices in the halo model construction and relation to WDM and an additional plot showing the mass function
- Published
- 2019
30. Dark Energy after GW170817 Revisited
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Paul M. Saffin, Antonio Padilla, Constantinos Skordis, Michael Kopp, and Edmund J. Copeland
- Subjects
Physics ,High Energy Physics - Theory ,Gravitational wave ,Scalar equation ,General Physics and Astronomy ,FOS: Physical sciences ,Cosmological model ,General Relativity and Quantum Cosmology (gr-qc) ,01 natural sciences ,LIGO ,General Relativity and Quantum Cosmology ,Quintic function ,Theoretical physics ,High Energy Physics - Theory (hep-th) ,0103 physical sciences ,Dark energy ,010306 general physics ,Gamma-ray burst ,Scalar field - Abstract
We revisit the status of scalar-tensor theories with applications to dark energy in the aftermath of the gravitational wave signal GW170817 and its optical counterpart GRB170817A. At the level of the cosmological background, we identify a class of theories, previously declared unviable in this context, whose anomalous gravitational wave speed is proportional to the scalar equation of motion. As long as the scalar field is assumed not to couple directly to matter, this raises the possibility of compatibility with the gravitational wave data, for any cosmological sources, thanks to the scalar dynamics. This newly "rescued" class of theories includes examples of generalised quintic galileons from Horndeski theories. Despite the promise of this leading order result, we show that the loophole ultimately fails when we include the effect of large scale inhomogeneities., Updated with corrections to the gravitational wave propagation coming from higher order terms in the presence of large scale inhomogeneities. These close off any remaining loopholes. References added
- Published
- 2019
31. Asynchronous Federated Learning for Geospatial Applications
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Catalin Capota, Marco Scavuzzo, Lyman Do, Michael Sprague, Moritz Neun, Michael Kopp, and Amir Jalalirad
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020203 distributed computing ,Geospatial analysis ,Edge device ,Computer science ,Distributed computing ,02 engineering and technology ,computer.software_genre ,Convolutional neural network ,Federated learning ,020202 computer hardware & architecture ,Geolocation ,Rate of convergence ,Asynchronous communication ,Robustness (computer science) ,0202 electrical engineering, electronic engineering, information engineering ,computer - Abstract
Federated learning is an emerging collaborative machine-learning paradigm for training models directly on edge devices. The data remains on the edge device and this method is robust under real-world edge data distributions. We present a new asynchronous federated-learning algorithm (‘asynchronous federated learning’) and study its convergence rate when distributed across many edge devices, with hard data constraints, relative to training the same model on a single device. We compare asynchronous federated learning to an existing synchronous method. We evaluate its robustness in real-world situations; for example, devices joining part-way through training or devices with heterogeneous compute resources. We then apply asynchronous federated learning to a challenging geospatial application, namely image-based geolocation using a state-of-the-art convolutional neural network. Our results lay the groundwork for deploying large-scale federated learning as a tool to automatically learn, and continually update, a machine-learned model that encodes location.
- Published
- 2019
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32. Phenotypic lag and population extinction in the moving-optimum model: insights from a small-jumps limit
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Michael Kopp, Etienne Pardoux, Elma Nassar, ALEA, Institut de Mathématiques de Marseille (I2M), Centre National de la Recherche Scientifique (CNRS)-École Centrale de Marseille (ECM)-Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)-École Centrale de Marseille (ECM)-Aix Marseille Université (AMU), Centre National de la Recherche Scientifique (CNRS)-École Centrale de Marseille (ECM)-Aix Marseille Université (AMU), Aix Marseille Université (AMU)-École Centrale de Marseille (ECM)-Centre National de la Recherche Scientifique (CNRS)-Aix Marseille Université (AMU)-École Centrale de Marseille (ECM)-Centre National de la Recherche Scientifique (CNRS), and Aix Marseille Université (AMU)-École Centrale de Marseille (ECM)-Centre National de la Recherche Scientifique (CNRS)
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0301 basic medicine ,Mutation rate ,Exponential distribution ,Lag ,Population ,Environment ,Extinction, Biological ,Global Warming ,Models, Biological ,03 medical and health sciences ,Quantitative Trait, Heritable ,Quantitative Biology::Populations and Evolution ,Animals ,Computer Simulation ,Statistical physics ,Limit (mathematics) ,Stabilizing selection ,Selection, Genetic ,education ,Mathematics ,education.field_of_study ,Stochastic Processes ,Extinction ,Models, Genetic ,Applied Mathematics ,[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE] ,Ornstein–Uhlenbeck process ,Mathematical Concepts ,Agricultural and Biological Sciences (miscellaneous) ,Adaptation, Physiological ,Biological Evolution ,030104 developmental biology ,Genetics, Population ,Phenotype ,Modeling and Simulation ,Mutation - Abstract
International audience; Continuous environmental change-such as slowly rising temperatures-may create permanent maladaptation of natural populations: Even if a population adapts evolutionarily, its mean phenotype will usually lag behind the phenotype favored in the current environment, and if the resulting phenotypic lag becomes too large, the population risks extinction. We analyze this scenario using a moving-optimum model, in which one or more quantitative traits are under stabilizing selection towards an optimal value that increases at a constant rate. We have recently shown that, in the limit of infinitely small mutations and high mutation rate, the evolution of the phenotypic lag converges to an Ornstein-Uhlenbeck process around a long-term equilibrium value. Both the mean and the variance of this equilibrium lag have simple analytical formulas. Here, we study the properties of this limit and compare it to simulations of an evolving population with finite mutational effects. We find that the small-jumps limit provides a reasonable approximation, provided the mean lag is so large that the optimum cannot be reached by a single mutation. This is the case for fast environmental change and/or weak selection. Our analysis also provides insights into population extinction: Even if the mean lag is small enough to allow a positive growth rate, stochastic fluctuations of the lag will eventually cause extinction. We show that the time until this event follows an exponential distribution, This study benefited from a PHC Amadeus exchange grant (project number 31642SJ) to whose mean depends strongly on a composite parameter that relates the speed of environmental change to the adaptive potential of the population.
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- 2018
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33. Theory Meets Empiry: A Citation Network Analysis
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Michael Kopp, Tamra C. Mendelson, Courtney L. Fitzpatrick, Laurel B. Symes, Rafael L. Rodríguez, Rebecca J. Safran, Elizabeth A. Hobson, Caitlin A. Stern, Elizabeth S. C. Scordato, Maria R. Servedio, Department of Biology [Bloomington], Indiana University [Bloomington], Indiana University System-Indiana University System, Santa Fe Institute, University of Maryland [Baltimore County] (UMBC), University of Maryland System, University of Wisconsin - Milwaukee, University of Colorado [Boulder], California State Polytechnic University [Pomona] (CAL POLY POMONA), University of North Carolina [Chapel Hill] (UNC), University of North Carolina System (UNC), Dartmouth College [Hanover], ALEA, Institut de Mathématiques de Marseille (I2M), Aix Marseille Université (AMU)-École Centrale de Marseille (ECM)-Centre National de la Recherche Scientifique (CNRS)-Aix Marseille Université (AMU)-École Centrale de Marseille (ECM)-Centre National de la Recherche Scientifique (CNRS), Aix Marseille Université (AMU)-École Centrale de Marseille (ECM)-Centre National de la Recherche Scientifique (CNRS), National Evolutionary Synthesis Center (NESCent), NSF EF-0905606, NIH 5T32HD049336-12, and NSF DEB1255777
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0106 biological sciences ,Citation network analysis ,Computer science ,media_common.quotation_subject ,[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE] ,citation network ,Positive correlation ,010603 evolutionary biology ,01 natural sciences ,Data science ,Focus (linguistics) ,010601 ecology ,Empirical research ,science of science ,speciation ,Professional Biologist ,Perception ,Sexual selection ,sexual selection ,[MATH]Mathematics [math] ,General Agricultural and Biological Sciences ,Function (engineering) ,theory ,Complement (set theory) ,media_common - Abstract
International audience; According to a recent survey, ecologists and evolutionary biologists feel that theoretical and empirical research should coexist in a tight feedback loop but believe that the two domains actually interact very little. We evaluate this perception using a citation network analysis for two data sets, representing the literature on sexual selection and speciation. Overall, 54%-60% of citations come from a paper's own category, whereas 17%-23% are citations across categories. These cross-citations tend to focus on highly cited papers, and we observe a positive correlation between the numbers of citations a study receives within and across categories. We find evidence that reviews can function as integrators between the two literatures, argue that theoretical models are analogous to specific empirical study systems, and complement our analyses by studying a cocitation network. We conclude that theoretical and empirical research are more tightly connected than generally thought but that avenues exist to further increase this integration.
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- 2018
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34. Dark Matter Equation of State through Cosmic History
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Michael Kopp, S. Ilić, Constantinos Skordis, and Daniel B. Thomas
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Physics ,Cosmology and Nongalactic Astrophysics (astro-ph.CO) ,010308 nuclear & particles physics ,Equation of state (cosmology) ,Cosmic microwave background ,Dark matter ,Cosmic background radiation ,FOS: Physical sciences ,General Physics and Astronomy ,Inverse ,Astrophysics::Cosmology and Extragalactic Astrophysics ,Astrophysics ,01 natural sciences ,7. Clean energy ,Omega ,Redshift ,Baryon ,13. Climate action ,0103 physical sciences ,010303 astronomy & astrophysics ,Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
Cold Dark Matter (CDM) is a crucial constituent of the current concordance cosmological model. Having a vanishing equation of state (EoS), its energy density scales with the inverse cosmic volume and is thus uniquely described by a single number, its present abundance. We test the inverse cosmic volume law for Dark Matter (DM) by allowing its EoS to vary independently in eight redshift bins in the range $z=10^5$ and $z=0$. We use the latest measurements of the Cosmic Microwave Background radiation from the Planck satellite and supplement them with Baryon Acoustic Oscillation (BAO) data from the 6dF and SDSS-III BOSS surveys, and with the Hubble Space Telescope (HST) key project data. We find no evidence for nonzero EoS in any of the eight redshift bins. With Planck data alone, the DM abundance is most strongly constrained around matter-radiation equality $\omega^{\rm eq}_g = 0.1193^{+0.0036}_{-0.0035}$ (95% c.l.), whereas its present day value is more weakly constrained $\omega^{(0)}_g = 0.16^{+0.12}_{-0.10}$ (95% c.l.). Adding BAO or HST data does not significantly change the $\omega^{\rm eq}_g$ constraint, while $\omega^{(0)}_g$ tightens to $0.160^{+0.069}_{-0.065} $ (95% c.l.) and $0.124^{+0.081}_{-0.067}$ (95% c.l.) respectively. Our results constrain for the first time the level of "coldness" required of the DM across various cosmological epochs and show that the DM abundance is strictly positive at all times., Comment: 6 pages, 4 figures, changed color scheme for figures
- Published
- 2018
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35. Towards Modeling Geographical Processes with Generative Adversarial Networks (GANs) (Short Paper)
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David Jonietz and Michael Kopp, Jonietz, David, Kopp, Michael, David Jonietz and Michael Kopp, Jonietz, David, and Kopp, Michael
- Abstract
Recently, Generative Adversarial Networks (GANs) have demonstrated great potential for a range of Machine Learning tasks, including synthetic video generation, but have so far not been applied to the domain of modeling geographical processes. In this study, we align these two problems and - motivated by the potential advantages of GANs compared to traditional geosimulation methods - test the capability of GANs to learn a set of underlying rules which determine a geographical process. For this purpose, we turn to Conway’s well-known Game of Life (GoL) as a source for spatio-temporal training data, and further argue for its (and simple variants of it) usefulness as a potential standard training data set for benchmarking generative geographical process models.
- Published
- 2019
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36. Solving the Vlasov equation in two spatial dimensions with the Schrödinger method
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Constantinos Skordis, Michael Kopp, and Kyriakos Vattis
- Subjects
Physics ,010308 nuclear & particles physics ,Vlasov equation ,Function (mathematics) ,System of linear equations ,01 natural sciences ,Computational physics ,Gaussian random field ,Sine wave ,Phase space ,0103 physical sciences ,Effective field theory ,Statistical physics ,Wave function ,010303 astronomy & astrophysics ,Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
We demonstrate that the Vlasov equation describing collisionless self-gravitating matter may be solved with the so-called Schr\"odinger method (ScM). With the ScM, one solves the Schr\"odinger-Poisson system of equations for a complex wave function in d dimensions, rather than the Vlasov equation for a 2d-dimensional phase space density. The ScM also allows calculating the d-dimensional cumulants directly through quasi-local manipulations of the wave function, avoiding the complexity of 2d-dimensional phase space. We perform for the first time a quantitive comparison of the ScM and a conventional Vlasov solver in d=2 dimensions. Our numerical tests were carried out using two types of cold cosmological initial conditions: the classic collapse of a sine wave and those of a gaussian random field as commonly used in cosmological cold dark matter N-body simulations. We compare the first three cumulants, that is, the density, velocity and velocity dispersion, to those obtained by solving the Vlasov equation using the publicly available code ColDICE. We find excellent qualitative and quantitative agreement between these codes, demonstrating the feasibility and advantages of the ScM as an alternative to N-body simulations. We discuss, the emergence of effective vorticity in the ScM through the winding number around the points where the wave function vanishes. As an application we evaluate the background pressure induced by the non-linearity of large scale structure formation, thereby estimating the magnitude of cosmological backreaction. We find that it is negligibly small and has time dependence and magnitude compatible with expectations from the effective field theory of large scale structure., Comment: 29 pages, 14 figures, corresponds to published version
- Published
- 2017
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37. Mechanisms of Assortative Mating in Speciation with Gene Flow: Connecting Theory and Empirical Research
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Michael Kopp, Rafael L. Rodríguez, Tamra C. Mendelson, Elizabeth C Scordato, Rebecca J. Safran, Christopher N. Balakrishnan, Laurel B. Symes, Mark E. Hauber, G. Sander van Doorn, David M. Zonana, Maria R. Servedio, Institut de Mathématiques de Marseille (I2M), Centre National de la Recherche Scientifique (CNRS)-École Centrale de Marseille (ECM)-Aix Marseille Université (AMU), National Evolutionary Synthesis Center (NESCent) through the National Science Foundation (NSF), EF-0905606, NSF (DEB 1255777, IOS-1120790, DEB-CAREER 1149942, IOS-1456524, IOS-1456612), NESCent Graduate Student Fellowship, Netherlands Organisation for Scientific Research (Vidi), 864.11.012, European Project: 309555,EC:FP7:ERC,ERC-2012-StG_20111109,EVOSYSBIO(2012), Van Doorn group, and Aix Marseille Université (AMU)-École Centrale de Marseille (ECM)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
0106 biological sciences ,0301 basic medicine ,Gene Flow ,PLANT-FEEDING INSECTS ,mating preferences ,Genetic Speciation ,[SDV]Life Sciences [q-bio] ,FREQUENCY-DEPENDENT SELECTION ,Biology ,HOST-PLANT ,010603 evolutionary biology ,01 natural sciences ,Ecological speciation ,03 medical and health sciences ,self-referent phenotype matching ,Journal Article ,sexual selection ,Animals ,[MATH]Mathematics [math] ,SYMPATRIC SPECIATION ,Ecology, Evolution, Behavior and Systematics ,EUROPEAN CORN-BORER ,SEXUAL-SELECTION ,ECOLOGICAL SPECIATION ,speciation with gene flow ,Models, Genetic ,ANALYTICALLY TRACTABLE MODEL ,[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE] ,Assortative mating ,Reproductive isolation ,Mating Preference, Animal ,Biological Evolution ,Mating preferences ,030104 developmental biology ,mating pref- erences ,Phenotype ,Mate choice ,Evolutionary biology ,Sympatric speciation ,MATE-CHOICE ,Sexual selection ,assortative mating ,Trait ,REPRODUCTIVE ISOLATION ,imprinting - Abstract
International audience; The large body of theory on speciation with gene flow has brought to light fundamental differences in the effects of two types of mating rules on speciation: preference/trait rules, in which divergence in both (female) preferences and (male) mating traits is necessary for assortment, and matching rules, in which individuals mate with like individuals on the basis of the presence of traits or alleles that they have in common. These rules can emerge from a variety of behavioral or other mechanisms in ways that are not always obvious. We discuss the theoretical properties of both types of rules and explain why speciation is generally thought to be more likely under matching rather than preference/trait rules. We furthermore discuss whether specific assortative mating mechanisms fall under a preference/trait or matching rule, present empirical evidence for these mechanisms, and propose empirical tests that could distinguish between them. The synthesis of the theoretical literature on these assortative mating rules with empirical studies of the mechanisms by which they act can provide important insights into the occurrence of speciation with gene flow. Finally, by providing a clear framework we hope to inspire greater alignment in the ways that both theoreticians and empiricists study mating rules and how these rules affect speciation through maintaining or eroding barriers to gene flow among closely related species or populations.
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- 2017
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38. Beyond single-stream with the Schrödinger method
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Michael Kopp and Cora Uhlemann
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Physics ,Cold dark matter ,Dark matter ,Shell (structure) ,Astronomy and Astrophysics ,symbols.namesake ,Schrödinger method ,Space and Planetary Science ,Phase space ,symbols ,Gravitational singularity ,Poisson's equation ,Schrödinger's cat ,Mathematical physics - Abstract
We investigate large scale structure formation of collisionless dark matter in the phase space description based on the Vlasov-Poisson equation. We present the Schrödinger method, originally proposed by \cite{WK93} as numerical technique based on the Schrödinger Poisson equation, as an analytical tool which is superior to the common standard pressureless fluid model. Whereas the dust model fails and develops singularities at shell crossing the Schrödinger method encompasses multi-streaming and even virialization.
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- 2014
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39. Utilizing Object Capabilities to Improve Web Application Security
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Michael Koppmann, Christian Kudera, Michael Pucher, and Georg Merzdovnik
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object capabilities ,secure design patterns ,web security ,Management information systems ,T58.6-58.62 - Abstract
Nowadays, more and more applications are built with web technologies, such as HTML, CSS, and JavaScript, which are then executed in browsers. The web is utilized as an operating system independent application platform. With this change, authorization models change and no longer depend on operating system accounts and underlying access controls and file permissions. Instead, these accounts are now implemented in the applications themselves, including all of the protective measures and security controls that are required for this. Because of the inherent complexity, flaws in the authorization logic are among the most common security vulnerabilities in web applications. Most applications are built on the concept of the Access-Control List (ACL), a security model that decides who can access a given object. Object Capabilities, transferable rights to perform operations on specific objects, have been proposed as an alternative to ACLs, since they are not susceptible to certain attacks prevalent for ACLs. While their use has been investigated for various domains, such as smart contracts, they have not been widely applied for web applications. In this paper, we therefore present a general overview of the capability- based authorization model and adapt those approaches for use in web applications. Based on a prototype implementation, we show the ways in which Object Capabilities may enhance security, while also offering insights into existing pitfalls and problems in porting such models to the web domain.
- Published
- 2022
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40. La certificación de los MOOC. Ventajas, desafíos y experiencias prácticas
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Michael Kopp and Martin Ebner
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Medical education ,05 social sciences ,Context (language use) ,MOOC ,Certification ,010501 environmental sciences ,01 natural sciences ,Education ,certificados ,iMoox ,0502 economics and business ,Individual learning ,distintivos en forma de credenciales ,retos ,Research questions ,Psychology ,experiencias prácticas ,Revista Española de Pedagogía ,050203 business & management ,0105 earth and related environmental sciences - Abstract
bstract: In general, participants use MOOCs for individual learning purposes by selecting certain contents of a MOOC in which they are interested. Simultaneously, MOOCs are used in the context of online-lectures offered to students who must or may enroll for a specific course to earn credits. However, many participants do not successfully complete all units of a MOOC. Therefore, completion rates —in general— are rather low. Certificates like PDF-documents or electronic badges can be an adequate stimulation to complete a course. This research raises the questions, how the certification of MOOC-participants can be managed and if certificates have an impact on completion rates. Firstly, general aspects of certification are discussed. This is followed by a practical insight into the certification practice based on experiences of the Austrian MOOC-platform iMooX operators. As a conclusion, results are summarized and related challenges and further research questions are addressed. De forma general, los participantes de los cursos MOOC acuden a ellos por deseos personales de aprender, por lo que seleccionan ciertos contenidos del MOOC en el que están interesados. A su vez, los MOOC también se emplean en el contexto de clases en línea que se ofrecen al alumnado que necesita alcanzar créditos académicos en su formación. Sin embargo, muchos participantes no finalizan todo el curso MOOC y las tasas de éxito son, en general, relativamente bajas. Los certificados en forma de documentos PDF, o distintivos en forma de credencial (badges), pueden resultar de estímulo para finalizar estos cursos. Esta investigación analiza cómo se puede afrontar la certificación de los participantes en un curso MOOC y si la certificación tiene, de alguna manera, incidencia en las tasas de éxito. En primer lugar, se discuten aspectos generales de la certificación y, a continuación, se realiza un análisis práctico con base en la plataforma MOOC austriaca iMooX. Las conclusiones muestran los principales retos e investigaciones derivadas del estudio y su desarrollo futuro.
- Published
- 2017
41. Gaussian streaming with the truncated Zel’dovich approximation
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Michael Kopp, Ixandra Achitouv, and Cora Uhlemann
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Physics ,Scale (ratio) ,010308 nuclear & particles physics ,Gaussian ,Spectral density ,Velocity dispersion ,Astrophysics::Cosmology and Extragalactic Astrophysics ,01 natural sciences ,Redshift ,Correlation function (statistical mechanics) ,symbols.namesake ,Classical mechanics ,0103 physical sciences ,symbols ,Statistical physics ,Halo ,010303 astronomy & astrophysics ,Smoothing - Abstract
We calculate the halo correlation function in redshift space using the Gaussian streaming model (GSM). To determine the scale-dependent functions entering the GSM, we use local Lagrangian bias together with convolution Lagrangian perturbation theory (CLPT), which constitutes an approximation to the Post-Zel'dovich approximation. On the basis of $N$-body simulations, we demonstrate that a smoothing of the initial conditions with the Lagrangian radius improves the Zel'dovich approximation and its ability to predict the displacement field of protohalos. Based on this observation, we implement a ``truncated'' CLPT by smoothing the initial power spectrum and investigate the dependence of the streaming model ingredients on the smoothing scale. We find that the real space correlation functions of halos and their mean pairwise velocity are optimized if the coarse graining scale is chosen to be $1\text{ }\text{ }\mathrm{Mpc}/h$ at $z=0$, while the pairwise velocity dispersion is optimized if the smoothing scale is chosen to be the Lagrangian size of the halo. We compare theoretical results for the halo correlation function in redshift space to measurements within the Horizon run 2 $N$-body simulation halo catalog. We find that this simple two-filter smoothing procedure in the spirit of the truncated Zel'dovich approximation significantly improves the $\mathrm{GSM}+\mathrm{CLPT}$ prediction of the redshift space halo correlation function over the whole mass range from large galaxy to galaxy cluster--sized halos. We expect that the necessity for two filter scales is an artifact of our local bias model, and that once a more physical bias model is implemented in CLPT, the only physically relevant smoothing scale will be related to the Lagrangian radius, in accord with our findings based on $N$-body simulations.
- Published
- 2016
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42. Sexual selection and magic traits in speciation with gene flow
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Michael Kopp and Maria R. Servedio
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Ecological selection ,Ecology ,Evolutionary biology ,media_common.quotation_subject ,Sexual selection ,Assortative mating ,Animal Science and Zoology ,Reproductive isolation ,Biology ,Magic (paranormal) ,media_common ,Gene flow ,Ecological speciation - Abstract
The extent to which sexual selection is involved in speciation with gene flow remains an open question and the subject of much research. Here, we propose that some insight can be gained from considering the concept of magic traits (i.e., traits involved in both reproductive isolation and ecological divergence). Both magic traits and other, “non-magic”, traits can contribute to speciation via a number of specific mechanisms. We argue that many of these mechanisms are likely to differ widely in the extent to which they involve sexual selection. Furthermore, in some cases where sexual selection is present, it may be prone to inhibit rather than drive speciation. Finally, there are a priori reasons to believe that certain categories of traits are much more effective than others in driving speciation. The combination of these points suggests a classification of traits that may shed light on the broader role of sexual selection in speciation with gene flow. In particular, we suggest that sexual selection can act as a driver of speciation in some scenarios, but may play a negligible role in potentially common categories of magic traits, and may be likely to inhibit speciation in common categories of non-magic traits.
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- 2012
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43. A robust new metric of phenotypic distance to estimate and compare multiple trait differences among populations
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Rebecca SAFRAN, Samuel FLAXMAN, Michael KOPP, Darren E. IRWIN, Derek BRIGGS, Matthew R. EVANS, W. Chris FUNK, David A. GRAY, Eileen A. HEBE
- Subjects
Sexual dimorphism ,Phenotype divergence ,Sexual selection ,Speciation ,lcsh:Zoology ,lcsh:QL1-991 ,Effect size - Abstract
Whereas a rich literature exists for estimating population genetic divergence, metrics of phenotypic trait divergence are lacking, particularly for comparing multiple traits among three or more populations. Here, we review and analyze via simulation Hedges’ g, a widely used parametric estimate of effect size. Our analyses indicate that g is sensitive to a combination of unequal trait variances and unequal sample sizes among populations and to changes in the scale of measurement. We then go on to derive and explain a new, non-parametric distance measure, “Δp”, which is calculated based upon a joint cumulative distribution function (CDF) from all populations under study. More precisely, distances are measured in terms of the percentiles in this CDF at which each population’s median lies. Δp combines many desirable features of other distance metrics into a single metric; namely, compared to other metrics, p is relatively insensitive to unequal variances and sample sizes among the populations sampled. Furthermore, a key feature of Δp—and our main motivation for developing it—is that it easily accommodates simultaneous comparisons of any number of traits across any number of populations. To exemplify its utility, we employ Δp to address a question related to the role of sexual selection in speciation: are sexual signals more divergent than ecological traits in closely related taxa? Using traits of known function in closely related populations, we show that traits predictive of reproductive performance are, indeed, more divergent and more sexually dimorphic than traits related to ecological adaptation [Current Zoology 58 (3): 423-436, 2012].
- Published
- 2012
44. Sexual selection and magic traits in speciation with gene flow
- Author
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Maria R. SERVEDIO, Michael KOPP
- Subjects
Assortative mating ,Non-random mating ,Divergent selection ,Preferences ,Mating cues ,lcsh:Zoology ,Ecological selection ,lcsh:QL1-991 - Abstract
The extent to which sexual selection is involved in speciation with gene flow remains an open question and the subject of much research. Here, we propose that some insight can be gained from considering the concept of magic traits (i.e., traits involved in both reproductive isolation and ecological divergence). Both magic traits and other, “non-magic”, traits can contribute to speciation via a number of specific mechanisms. We argue that many of these mechanisms are likely to differ widely in the extent to which they involve sexual selection. Furthermore, in some cases where sexual selection is present, it may be prone to inhibit rather than drive speciation. Finally, there are a priori reasons to believe that certain categories of traits are much more effective than others in driving speciation. The combination of these points suggests a classification of traits that may shed light on the broader role of sexual selection in speciation with gene flow. In particular, we suggest that sexual selection can act as a driver of speciation in some scenarios, but may play a negligible role in potentially common categories of magic traits, and may be likely to inhibit speciation in common categories of non-magic traits [Current Zoology 58 (3): 507–513, 2012].
- Published
- 2012
45. Establishment of low-cost laboratory automation processes using AutoIt and 4-axis robots
- Author
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Nicole Rupp, Katrin Peschke, Michael Köppl, David Drissner, and Thole Zuchner
- Subjects
Laboratory automation ,AutoIt ,4-axis robot arm ,Biotechnology ,TP248.13-248.65 ,Medical technology ,R855-855.5 - Abstract
In most small laboratories, many processes are not yet automated because existing laboratory automation solutions are usually expensive and inflexible to use. Examples of this are autosamplers that are only compatible with one specific laboratory instrument or larger liquid handling stations that are expensive and usually self-contained. A flexible and inexpensive way to automate laboratory processes would be to automate existing laboratory equipment with the help of suitable robotic arms. In this study, we investigate the feasibility of such a strategy based on a low-cost 4-axis robot and freely available software. We used the scripting language AutoIt that automates any Windows-based instrument control software. Using these tools, we automated three fundamentally different laboratory processes: a pipetting process, a use as an autosampler for an atomic absorption spectroscopy instrument, and a more complex process involving the inoculation of bacterial cultures. We also integrated a conventional webcam for 2D barcode recognition. Compared to a trained professional who performed all experiments manually, all setups showed no significant differences in accuracy and precision. In summary, the tested system consisting of a 4-axis robot and freely available software is suitable for flexible automation and has potential for even more complex laboratory processes. Limitations such as a lack of collaboration and speed will be addressed in follow-up studies. The system thus represents a well-suited flexible laboratory automation system for both research and teaching purposes.
- Published
- 2022
- Full Text
- View/download PDF
46. Effects of epistasis and the evolution of genetic architecture: Exact results for a 2-locus model
- Author
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Joachim Hermisson, José M. Álvarez-Castro, and Michael Kopp
- Subjects
Multilinear map ,Computer Science::Neural and Evolutionary Computation ,Parameter space ,Quantitative trait locus ,Biology ,Genetic drift ,Genetic variation ,Statistics ,Genetic architecture ,Quantitative Biology::Populations and Evolution ,Computer Simulation ,Statistical physics ,Genetic variance ,Alleles ,Ecology, Evolution, Behavior and Systematics ,Stochastic Processes ,Models, Genetic ,Epistasis, Genetic ,Canalization ,Biological Evolution ,Quantitative Biology::Genomics ,Epistasis ,Trait ,Mutation-selection model - Abstract
We study a two-locus model of a quantitative trait with a continuum-of alleles and multilinear epistasis that evolves under mutation, selection, and genetic drift. We derive analytical results based on the so-called House of Gauss approximation for the genetic variance, the mean phenotype, and the mutational variance in the balance of the evolutionary forces. The analytical work is complemented by extensive individual-based computer simulations. We find that (1) analytical results are accurate in a large parameter space; (2) epistasis always reduces the equilibrium genetic variance, as predicted in earlier studies that exclude drift; (3) large-scale stochastic fluctuations and non-equilibrium phenomena like adaptive inertia can strongly influence the evolution of the genetic architecture of the trait.
- Published
- 2009
- Full Text
- View/download PDF
47. An Analytically Tractable Model for Competitive Speciation
- Author
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Joachim Hermisson, Géza Meszéna, Pleuni S. Pennings, Michael Kopp, and Ulf Dieckmann
- Subjects
Models, Genetic ,Disruptive selection ,Genetic Speciation ,Frequency-dependent selection ,Assortative mating ,Biology ,Biological Evolution ,Ecological speciation ,Evolutionary biology ,Sympatric speciation ,Sexual selection ,Computer Simulation ,Statistical physics ,Selection, Genetic ,Stabilizing selection ,Ecology, Evolution, Behavior and Systematics - Abstract
Several recent models have shown that frequency-dependent disruptive selection created by intraspecific competition can lead to the evolution of assortative mating and, thus, to competitive sympatric speciation. However, since most of these results rely on limited numerical analyses, their generality has been debated. Here, we consider one of the standard models (the so-called Roughgarden model) with a simplified genetics where the selected trait is determined by a single diallelic locus. This model is sufficiently complex to maintain key properties of the general multilocus case but simple enough to allow for comprehensive analytical treatment by means of invasion fitness arguments. Depending on (1) the strength and (2) the shape of stabilizing selection, (3) the strength and (4) the shape of pairwise competition, (5) the shape of the mating function, and (6) whether assortative mating leads to sexual selection, we find five different evolutionary regimes. In one of these regimes, complete reproductive isolation can evolve through arbitrarily small steps in the strength of assortative mating. Our approach provides a mechanistic understanding of several phenomena that have been found in previous models. The results demonstrate how even in a simple model, the evolutionary outcome depends in a complex way on ecological and genetic parameters.
- Published
- 2008
- Full Text
- View/download PDF
48. Combined first-order reversal curve and x-ray microscopy investigation of magnetization reversal mechanisms in hexagonal antidot lattices
- Author
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Michael Kopp, Markus Weigand, Ulf Wiedwald, C. Stahl, Gisela Schütz, Eberhard Goering, Felix Haering, Joachim Gräfe, Nick Träger, and Paul J. Ziemann
- Subjects
Materials science ,Condensed matter physics ,X-ray ,02 engineering and technology ,Coercivity ,Physik (inkl. Astronomie) ,021001 nanoscience & nanotechnology ,01 natural sciences ,Focused ion beam ,Magnetic anisotropy ,Magnetization ,Lattice (order) ,0103 physical sciences ,Microscopy ,Thin film ,010306 general physics ,0210 nano-technology - Abstract
OA hybrid The magnetization reversal in nanoscaled antidot lattices is widely investigated to understand the tunability of the magnetic anisotropy and the coercive field through nanostructuring of thin films. By investigating highly ordered focused ion beam milled antidot lattices with a combination of first-order reversal curves and magnetic x-ray microscopy, we fully elucidate the magnetization reversal along the distinct orientations of a hexagonal antidot lattice. This combination proves especially powerful as all partial steps of this complex magnetization reversal can be identified and subsequently imaged. Through this approach we discovered several additional steps that were neglected in previous studies. Furthermore, by imaging the microscopic magnetization state during each reversal step, we were able to link the coercive and interaction fields determined by the first-order reversal curve method to true microscopic magnetization configurations and determine their origin.
- Published
- 2016
49. Potential of EPUB3 for Digital Textbooks in Higher Education
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Michael Raunig, Elke Lackner, Christian Gailer, Alexei Scerbakov, Martin Ebner, and Michael Kopp
- Subjects
FOS: Computer and information sciences ,Higher education ,Multimedia ,business.industry ,Computer science ,E-learning (theory) ,Open learning ,computer.software_genre ,Variety (cybernetics) ,Computer Science - Computers and Society ,Content analysis ,Computers and Society (cs.CY) ,ComputingMilieux_COMPUTERSANDEDUCATION ,Openness to experience ,business ,computer - Abstract
The e-book market is currently in a strong upswing. This research study deals with the question which practical uses the e-book format EPUB3 offers for (higher) education. By means of a didactic content analysis, a range of interactive exercise types were developed as a result of conversations with teachers. For this purpose, a didactic and technical concept has been developed. Different kinds of exercises were prototypically implemented in an e-book. Finally, a brief overview reflects the present state of the current e-book readers. A subsequent discussion illuminates the strengths and weaknesses of the format. In summary, it can be remarked that EPUB3 is suitable for a variety of different exercises and that it is able to serve as a basic format for forthcoming digital textbooks. Furthermore the openness of EPUB3 will assist Open Learning and Teaching in a meaningful way., Comment: Conference, 13 pages
- Published
- 2016
50. Concepts and techniques of intraoperative radiotherapy (IORT) for breast cancer
- Author
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Heinz Deutschmann, Christian Menzel, Roland Reitsamer, Olaf Nairz, Gerhard Kametriser, Silvia Glueck, Florian Merz, Florentia Peintinger, Felix Sedlmayer, and Michael Kopp
- Subjects
medicine.medical_specialty ,business.industry ,medicine.medical_treatment ,Wide local excision ,Sentinel lymph node ,Axillary Lymph Node Dissection ,Partial Breast Irradiation ,General Medicine ,medicine.disease ,Surgery ,Radiation therapy ,Breast cancer ,Oncology ,Whole Breast Irradiation ,medicine ,Breast-conserving surgery ,Pharmacology (medical) ,Radiology, Nuclear Medicine and imaging ,business - Abstract
The standard treatment for early breast cancer comprises wide local excision, sentinel lymph node biopsy or axillary lymph node dissection, adjuvant medical treatment and radiotherapy to the whole breast. Many studies suggest that local control plays a crucial role in overall survival. The local recurrence rate is estimated to be 1% per year and varies between 4 and 7% after 5 years and up to 10 to 20% in the long-term follow up. On the basis of low local recurrence rates the concept of whole breast irradiation comes up for discussion, and partial breast irradiation (PBI) is increasingly under consideration. Intraoperative radiotherapy (IORT) is referred to as the delivery of a single high dose of irradiation directly to the tumor bed (confined target) during surgery. PBI (limited field radiation therapy, accelerated partial breast irradiation APBI) is the irradiation exclusively confined to a breast volume, the tumor surrounding tissue (tumor bed) either during surgery or after surgery without whole breast irradiation. Various methods and techniques for IORT or PBI are under investigation. The advantage of a very short radiation time or the integration of the complete radiation treatment into the surgical procedure convinces at a first glance. The promising short-term results of those studies must not fail to mention that local recurrence rates could probably increase and furthermore give rise to distant metastases and a reduction in overall survival. The combination of IORT in boost modality and whole breast irradiation has the ability to reduce local recurrence rates. The EBCTCG overview approves that differences in local treatment that substantially affect local recurrence rates would avoid about one breast cancer death over the next 15 years for every four local recurrences avoided, and should reduce 15-year overall mortality.
- Published
- 2007
- Full Text
- View/download PDF
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