7 results on '"Phillips, L.S."'
Search Results
2. Clinical and Metabolic Characterization of Adults With Type 2 Diabetes by Age in the Glycemia Reduction Approaches in Diabetes: A Comparative Effectiveness Study (GRADE) Cohort
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Aroda, Vanita R., Krause-Steinrauf, Heidi, Kazemi, Erin J., Buse, John B., Gulanski, Barbara I., Florez, Hermes J., Ahmann, Andrew J., Loveland, Amy, Kuhn, Alexander, Lonier, Jacqueline Y., Wexler, Deborah J., Crandall, J.P., McKee, M.D., Behringer-Massera, S., Brown-Friday, J., Xhori, E., Ballentine-Cargill, K., Duran, S., Estrella, H., Gonzalez de la torre, S., Lukin, J., Phillips, L.S., Burgess, E., Olson, D., Rhee, M., Wilson, P., Raines, T.S., Boers, J., Costello, J., Maher-Albertelli, M., Mungara, R., Savoye, L., White, C.A., Gullett, C., Holloway, L., Morehead, F., Person, S., Sibymon, M., Tanukonda, S., Adams, C., Ross, A., Balasubramanyam, A., Gaba, R., Gonzalez Hattery, E., Ideozu, A., Jimenez, J., Montes, G., Wright, C., Hollander, P., Roe, E., Jackson, A., Smiley, A., Burt, P., Estrada, L., Chionh, K., Ismail-Beigi, F., Falck-Ytter, C., Sayyed Kassem, L., Sood, A., Tiktin, M., Kulow, T., Newman, C., Stancil, K.A., Cramer, B., Iacoboni, J., Kononets, M.V., Sanders, C., Tucker, L., Werner, A., Maxwell, A., McPhee, G., Patel, C., Colosimo, L., Krol, A., Goland, R., Pring, J., Alfano, L., Kringas, P., Hausheer, C., Tejada, J., Gumpel, K., Kirpitch, A., Schneier, H., Green, J.B., AbouAssi, H., Chatterjee, R., Feinglos, M.N., English Jones, J., Khan, S.A., Kimpel, J.B., Zimmer, R.P., Furst, M., Satterwhite, B.M., Thacker, C.R., Evans Kreider, K., Mariash, C.N., Mather, K.J., Ismail, H.M., Lteif, A., Mullen, M., Hamilton, T., Patel, N., Riera, G., Jackson, M., Pirics, V., Aguillar, D., Howard, D., Hurt, S., Bergenstal, R., Carlson, A., Martens, T., Johnson, M., Hill, R., Hyatt, J., Jensen, C., Madden, M., Martin, D., Willis, H., Konerza, W., Yang, S., Kleeberger, K., Passi, R., Fortmann, S., Herson, M., Mularski, K., Glauber, H., Prihoda, J., Ash, B., Carlson, C., Ramey, P.A., Schield, E., Torgrimson-Ojerio, B., Arnold, K., Kauffman, B., Panos, E., Sahnow, S., Bays, K., Berame, K., Cook, J., Ghioni, D., Gluth, J., Schell, K., Criscola, J., Friason, C., Jones, S., Nazarov, S., Barzilay, J., Rassouli, N., Puttnam, R., Ojoawo, B., Nelson, R., Curtis, M., Hollis, B., Sanders-Jones, C., Stokes, K., El-Haqq, Z., Kolli, A., Tran, T., Wexler, D., Larkin, M., Meigs, J., Chambers, B., Dushkin, A., Rocchio, G., Yepes, M., Steiner, B., Dulin, H., Cayford, M., Chu, K., DeManbey, A., Hillard, M., Martin, K., Thangthaeng, N., Gurry, L., Kochis, R., Raymond, E., Ripley, V., Stevens, C., Park, J., Aroda, V., Ghazi, A., Magee, M., Ressing, Ann, Loveland, A., Hamm, M., Hurtado, M., Kuhn, A., Leger, J., Manandhar, L., Sanchez, O., Young, T., Mofor, F., Garg, R., Lagari-Libhaber, V., Florez, H.J., Valencia, W.M., Marks, J., Casula, S., Oropesa-Gonzalez, L., Hue, L., Cuadot, A., Nieto-Martinez, R., Riccio Veliz, A.K., Gutt, M., Kendal, Y.J., Veciana, B., Ahmann, A., Aby-Daniel, D., Joarder, F., Morimoto, V., Sprague, C., Yamashita, D., Cady, N., Rivera-Eschright, N., Kirchhoff, P., Morales Gomez, B., Adducci, J., Goncharova, A., Hox, S.H., Petrovitch, H., Matwichyna, M., Jenkins, V., Broadwater, L., Ishii, R.R., Bermudez, N.O., Hsia, D.S., Cefalu, W.T., Greenway, F.L., Waguespack, C., King, E., Fry, G., Dragg, A., Gildersleeve, B., Arceneaux, J., Haynes, N., Thomassie, A., Pavlionis, M., Bourgeois, B., Hazlett, C., Mudaliar, S., Henry, R., Boeder, S., Pettus, J., Diaz, E., Garcia-Acosta, D., Maggs, S., DeLue, C., Stallings, A., Castro, E., Hernandez, S., Krakoff, J., Curtis, J.M., Killean, T., Khalid, M., Joshevama, E., Tsingine, K., Karshner, T., Albu, J., Pi-Sunyer, F.X., Frances, S., Maggio, C., Ellis, E., Bastawrose, J., Gong, X., Banerji, M.A., August, P., Lee, M., Lorber, D., Brown, N.M., Josephson, D.H., Thomas, L.L., Tsovian, M., Cherian, A., Jacobson, M.H., Mishko, M.M., Kirkman, M.S., Buse, J.B., Dostou, J., Machineni, S., Young, L., Bergamo, K., Goley, A., Kerr, J., Largay, J.F., Guarda, S., Cuffee, J., Culmer, D., Fraser, R., Almeida, H., Coffer, S., Debnam, E., Kiker, L., Morton, S., Josey, K., Fuller, G., Garvey, W.T., Cherrington, A.L., Dyer, D., Lawson, M.C.R., Griffith, O., Agne, A., McCullars, S., Cohen, R.M., Craig, J., Rogge, M.C., Burton, K., Kersey, K., Wilson, C., Lipp, S., Vonder Meulen, M.B., Adkins, C., Onadeko, T., Rasouli, N., Baker, C., Schroeder, E., Razzaghi, M., Lyon, C., Penaloza, R., Underkofler, C., Lorch, R., Douglass, S., Steiner, S., Sivitz, W.I., Cline, E., Knosp, L.K., McConnell, J., Lowe, T., Herman, W.H., Pop-Busui, R., Tan, M.H., Martin, C., Waltje, A., Katona, A., Goodhall, L., Eggleston, R., Kuo, S., Bojescu, S., Bule, S., Kessler, N., LaSalle, E., Whitley, K., Seaquist, E.R., Bantle, A., Harindhanavudhi, T., Kumar, A., Redmon, B., Bantle, J., Coe, M., Mech, M., Taddese, A., Lesne, L., Smith, S., Desouza, C., Kuechenmeister, L., Shivaswamy, V., Burbach, S., Rodriguez, M.G., Seipel, K., Alfred, A., Morales, A.L., Eggert, J., Lord, G., Taylor, W., Tillson, R., Schade, D.S., Adolphe, A., Burge, M., Duran-Valdez, E., Martinez, J., Bancroft, A., Kunkel, S., Ali Jamaleddin Ahmad, F., Hernandez McGinnis, D., Pucchetti, B., Scripsick, E., Zamorano, A., DeFronzo, R.A., Cersosimo, E., Abdul-Ghani, M., Triplitt, C., Juarez, D., Garza, R.I., Verastiqui, H., Wright, K., Puckett, C., Raskin, P., Rhee, C., Abraham, S., Jordan, L.F., Sao, S., Morton, L., Smith, O., Osornio Walker, L., Schnurr-Breen, L., Ayala, R., Kreymer, R.B., Sturgess, D., Utzschneider, K.M., Kahn, S.E., Alarcon-Casas, L., Wright, L., Boyko, E.J., Tsai, E.C., Trence, D.L., Trikudanathan, S., Fattaleh, B.N., Montgomery, B.K., Atkinson, K.M., Kozedub, A., Concepcion, T., Moak, C., Prikhodko, N., Rhothisen, S., Elasy, T.A., Martin, S., Shackelford, L., Goidel, R., Hinkle, N., Lovell, C., Myers, J., Lipps Hogan, J., McGill, J.B., Salam, M., Schweiger, T., Kissel, S., Recklein, C., Clifton, M.J., Tamborlane, W., Camp, A., Gulanski, B., Inzucchi, S.E., Pham, K., Alguard, M., Gatcomb, P., Lessard, K., Perez, M., Iannone, L., Magenheimer, E., Montosa, A., Burch, H.B., Bremer, A.A., Fradkin, J., Nathan, D.M., Lachin, J.M., Krause-Steinrauf, H., Younes, N., Backman, M., Bebu, I., Butera, N., Buys, C.J., Fagan Murphy, A., Gao, Y., Ghosh, A., Gramzinski, M.R., Kazemi, E., Hall, S.D., Legowski, E., Suratt, C., Tripputi, M., Arey, A., Bethepu, J., Lund, C., Mangat Dhaliwal, P., McGee, P., Mesimer, E., Ngo, L., Steffes, M., Seegmiller, J., Saenger, A., Arends, V., Gabrielson, D., Conner, T., Warren, S., Day, J., Huminik, J., Scrymgeour, A., Soliman, E.Z., Pokharel, Y., Zhang, Z.M., Campbell, C., Hu, J., Keasler, L., Hensley, S., Li, Y., Mihalcea, R., Min, D.J., Perez-Rosas, V., Prosser, L., Resnicow, K., Ye, W., Shao, H., Zhang, P., Luchsinger, J., Sanchez, D., Assuras, S., Groessl, E., Sakha, F., Chong, H., Hillery, N., Everett, B.M., Abdouch, I., Bahtiyar, G., Brantley, P., Broyles, F.E., Canaris, G., Copeland, P., Craine, J.J., Fein, W.L., Gliwa, A., Hope, L., Lee, M.S., Meiners, R., Meiners, V., O’Neal, H., Park, J.E., Sacerdote, A., Sledge, E., Soni, L., Steppel-Reznik, J., Turchin, A., Brooks-Worrell, B., Hampe, C.S., Newgard, C.B., Palmer, J.P., Shojaie, A., Higgins, J., Fischer, L., Golden, S., Gonzalez, J., Naik, A., Walker, E., Doner Lotenberg, L., Gallivan, J.M., Lim, J., and Tuncer, D.M.
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Clinical Care/Education/Nutrition/Psychosocial Research - Abstract
OBJECTIVE: Differences in type 2 diabetes phenotype by age are described, but it is not known whether these differences are seen in a more uniformly defined adult population at a common early stage of care. We sought to characterize age-related clinical and metabolic characteristics of adults with type 2 diabetes on metformin monotherapy, prior to treatment intensification. RESEARCH DESIGN AND METHODS: In the Glycemia Reduction Approaches in Diabetes: A Comparative Effectiveness Study (GRADE), participants were enrolled who had type 2 diabetes duration
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- 2022
3. Coronary Artery Calcification (CAC) and Post‐Trial Cardiovascular Events and Mortality Within the Women's Health Initiative (WHI) Estrogen‐Alone Trial
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Poornima, Indu G., primary, Mackey, Rachel H., additional, Allison, Matthew A., additional, Manson, JoAnn E., additional, Carr, J. Jeffrey, additional, LaMonte, Michael J., additional, Chang, Yuefang, additional, Kuller, Lewis H., additional, Rossouw, J.E., additional, Ludlam, S., additional, Cochrane, B.B., additional, Hunt, J.R., additional, Lund, B., additional, Prentice, R., additional, O'Rourke, C., additional, Du, L., additional, Pillsbury, S., additional, Hightower, C., additional, Ellison, R., additional, Tan, J., additional, Wassertheil‐Smoller, S., additional, Magnani, M., additional, Noble, D.H., additional, Dellicarpini, T., additional, Bueche, M., additional, McGinnis, A.D., additional, Rybicki, F.J., additional, Assaf, A.R., additional, Sloane, G., additional, Phillips, L.S., additional, Butler, V., additional, Huber, M., additional, Vitali, J., additional, Hsia, J., additional, LeBrun, C., additional, Palm, R., additional, Embersit, D., additional, Whitlock, E., additional, Arnold, K., additional, Sidney, S., additional, Cantrell, V., additional, Kotchen, J.M., additional, Feltz, C., additional, Howard, B.V., additional, Thomas‐Geevarghese, A., additional, Boggs, G., additional, Jelinick, J.S., additional, Greenland, P., additional, Neuman, A., additional, Carlson‐Lund, G., additional, Giovanazzi, S.M., additional, Stefanick, M.L., additional, Swope, S., additional, Jackson, R., additional, Toussant, K., additional, Lewis, C.E., additional, Pierce, P., additional, Stallings, C., additional, Wactawski‐Wende, J., additional, Goel, S., additional, Laughlin, R., additional, Robbins, J., additional, Zaragoza, S., additional, Macias, D., additional, Belisle, D., additional, Nathan, L., additional, Voigt, B., additional, Goldin, J., additional, Woo, M., additional, Langer, R.D., additional, Lien, X., additional, Wright, C.M., additional, Gass, M., additional, Sheridan, S., additional, Robinson, J.G., additional, Feddersen, D., additional, Kelly‐Brake, K., additional, Carroll, J., additional, Ockene, J., additional, Churchill, L., additional, Lasser, N.L., additional, Miller, B., additional, Maldjian, P.D., additional, Pierre‐Louis, J., additional, Fishman, J., additional, O'Sullivan, M.J., additional, Fernandez, D., additional, Margolis, K.L., additional, Bjerk, C.L., additional, Truwit, C., additional, Hearity, J.A., additional, Hyslop, W.B., additional, Darroch, K., additional, Murphy, C., additional, Heiss, G., additional, Edmundowicz, D., additional, Ives, D., additional, Johnson, K.C., additional, Satterfield, S., additional, Connelly, S.A., additional, Jones, E.L., additional, Brzyski, R., additional, Nashawati, M.A., additional, Torchia, S., additional, Rodriguez, A., additional, Garza, R., additional, Nentwich, P., additional, Sarto, G.E., additional, Broderick, L., additional, Sweitzer, N.K., additional, Rossouw, Jacques, additional, Ludlam, Shari, additional, McGowan, Joan, additional, Ford, Leslie, additional, Geller, Nancy, additional, Anderson, Garnet, additional, Prentice, Ross, additional, LaCroix, Andrea, additional, Howard, Barbara V., additional, Jackson, Rebecca, additional, Thomson, Cynthia A., additional, Wactawski‐Wende, Jean, additional, Limacher, Marian, additional, Robinson, Jennifer, additional, Kuller, Lewis, additional, Shumaker, Sally, additional, and Brunner, Robert, additional
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- 2017
- Full Text
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4. Coronary Artery Calcification (CAC) and Post‐Trial Cardiovascular Events and Mortality Within the Women's Health Initiative (WHI) Estrogen‐Alone Trial
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Poornima, Indu G., Mackey, Rachel H., Allison, Matthew A., Manson, JoAnn E., Carr, J. Jeffrey, LaMonte, Michael J., Chang, Yuefang, Kuller, Lewis H., Rossouw, J.E., Ludlam, S., Cochrane, B.B., Hunt, J.R., Lund, B., Prentice, R., O'Rourke, C., Du, L., Pillsbury, S., Hightower, C., Ellison, R., Tan, J., Wassertheil‐Smoller, S., Magnani, M., Noble, D.H., Dellicarpini, T., Bueche, M., McGinnis, A.D., Rybicki, F.J., Assaf, A.R., Sloane, G., Phillips, L.S., Butler, V., Huber, M., Vitali, J., Hsia, J., LeBrun, C., Palm, R., Embersit, D., Whitlock, E., Arnold, K., Sidney, S., Cantrell, V., Kotchen, J.M., Feltz, C., Howard, B.V., Thomas‐Geevarghese, A., Boggs, G., Jelinick, J.S., Greenland, P., Neuman, A., Carlson‐Lund, G., Giovanazzi, S.M., Stefanick, M.L., Swope, S., Jackson, R., Toussant, K., Lewis, C.E., Pierce, P., Stallings, C., Wactawski‐Wende, J., Goel, S., Laughlin, R., Robbins, J., Zaragoza, S., Macias, D., Belisle, D., Nathan, L., Voigt, B., Goldin, J., Woo, M., Langer, R.D., Lien, X., Wright, C.M., Gass, M., Sheridan, S., Robinson, J.G., Feddersen, D., Kelly‐Brake, K., Carroll, J., Ockene, J., Churchill, L., Lasser, N.L., Miller, B., Maldjian, P.D., Pierre‐Louis, J., Fishman, J., O'Sullivan, M.J., Fernandez, D., Margolis, K.L., Bjerk, C.L., Truwit, C., Hearity, J.A., Hyslop, W.B., Darroch, K., Murphy, C., Heiss, G., Edmundowicz, D., Ives, D., Johnson, K.C., Satterfield, S., Connelly, S.A., Jones, E.L., Brzyski, R., Nashawati, M.A., Torchia, S., Rodriguez, A., Garza, R., Nentwich, P., Sarto, G.E., Broderick, L., Sweitzer, N.K., Rossouw, Jacques, Ludlam, Shari, McGowan, Joan, Ford, Leslie, Geller, Nancy, Anderson, Garnet, Prentice, Ross, LaCroix, Andrea, Howard, Barbara V., Jackson, Rebecca, Thomson, Cynthia A., Wactawski‐Wende, Jean, Limacher, Marian, Robinson, Jennifer, Kuller, Lewis, Shumaker, Sally, and Brunner, Robert
- Subjects
cardiovascular disease ,coronary artery calcification ,hormonal therapy ,mortality ,women ,Cardiovascular Disease ,Women ,Mortality/Survival ,Computerized Tomography (CT) ,Risk Factors - Abstract
Background: Among women aged 50 to 59 years at baseline in the Women's Health Initiative (WHI) Estrogen‐Alone (E‐Alone) trial, randomization to conjugated equine estrogen‐alone versus placebo was associated with lower risk of myocardial infarction and mortality, and, in an ancillary study, the WHI‐CACS (WHI Coronary Artery Calcification Study) with lower CAC, measured by cardiac computed tomography ≈8.7 years after baseline randomization. We hypothesized that higher CAC would be related to post‐trial coronary heart disease (CHD), cardiovascular disease (CVD), and total mortality, independent of baseline randomization or risk factors. Methods and Results: WHI‐CACS participants (n=1020) were followed ≈8 years from computed tomography scan in 2005 (mean age=64.4) through 2013 for incident CHD (myocardial infarction and fatal CHD, n=17), CVD (n=69), and total mortality (n=55). Incident CHD and CVD analyses excluded women with CVD before scan (n=89). Women with CAC=0 (n=54%) had very low age‐adjusted rates/1000 person‐years of CHD (0.91), CVD (5.56), and mortality (3.45). In comparison, rates were ≈2‐fold higher for women with any CAC (>0). Associations were not modified by baseline randomization to conjugated equine estrogen–alone versus placebo. Adjusted for baseline randomization and risk factors, the hazard ratio (95% confidence interval) for CAC >100 (19%) was 4.06 (2.11, 7.80) for CVD and 2.70 (1.26, 5.79) for mortality. Conclusions: Among a subset of postmenopausal women aged 50 to 59 years at baseline in the WHI E‐Alone Trial, CAC at mean age of 64 years was strongly related to incident CHD, CVD, and to total mortality over ≈8 years, independent of baseline randomization to conjugated equine estrogen–alone versus placebo or CVD risk factors. Clinical Trial Registration URL: https://www.clinicaltrials.gov. Unique identifier: NCT00000611.
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- 2017
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5. Extraction and nutritional/hormonal regulation of tissue insulin-like growth factor 1 activity
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Goldstein, S., primary and Phillips, L.S., additional
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- 1991
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6. Characterization of a somatomedin (insulin-like growth factor) synthesized by fetal rat liver organ cultures.
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Rechler, M.M., primary, Eisen, H.J., additional, Higa, O.Z., additional, Nissley, P., additional, Moses, A.C., additional, Schilling, E.E., additional, Fennoy, I., additional, Bruni, C.B., additional, Phillips, L.S., additional, and Baird, K.L., additional
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- 1979
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7. A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response
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Adolfo Correa, Kotaro Ogawa, Yukinori Okada, Paul J. McLaren, Philip E. Stuart, Kenichi Yamamoto, Peter K. Gregersen, Saori Sakaue, David W Haas, Tõnu Esko, Michael H. Cho, Albert V. Smith, Wanson Choi, Sebastian Schönherr, Yii-Der Ida Chen, James T. Elder, Soumya Raychaudhuri, Maria Gutierrez-Arcelus, Lukas Forer, Kent D. Taylor, Yang Luo, Xiuqing Guo, Jerome I. Rotter, Stephen S. Rich, Nicholette D. Palmer, Mary Carrington, Masahiro Kanai, Christian Fuchsberger, Buhm Han, Andres Metspalu, Xinyi Li, Sekar Kathiresan, James G. Wilson, Jacques Fellay, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Abe, N., Abecasis, G., Aguet, F., Albert, C., Almasy, L., Alonso, A., Ament, S., Anderson, P., Anugu, P., Applebaum-Bowden, D., Ardlie, K., Dan Arking, X., Arnett, D.K., Ashley-Koch, A., Aslibekyan, S., Assimes, T., Auer, P., Avramopoulos, D., Ayas, N., Balasubramanian, A., Barnard, J., Barnes, K., Barr, R.G., Barron-Casella, E., Barwick, L., Beaty, T., Beck, G., Becker, D., Becker, L., Beer, R., Beitelshees, A., Benjamin, E., Benos, T., Bezerra, M., Bielak, L., Bis, J., Blackwell, T., Blangero, J., Boerwinkle, E., Bowden, D.W., Bowler, R., Brody, J., Broeckel, U., Broome, J., Brown, D., Bunting, K., Burchard, E., Bustamante, C., Buth, E., Cade, B., Cardwell, J., Carey, V., Carrier, J., Carty, C., Casaburi, R., Romero, JPC, Casella, J., Castaldi, P., Chaffin, M., Chang, C., Chang, Y.C., Chasman, D., Chavan, S., Chen, B.J., Chen, W.M., Choi, S.H., Chuang, L.M., Chung, M., Chung, R.H., Clish, C., Comhair, S., Conomos, M., Cornell, E., Crandall, C., Crapo, J., Cupples, L.A., Curran, J., Curtis, J., Custer, B., Damcott, C., Darbar, D., David, S., Davis, C., Daya, M., de Andrade, M., Fuentes, L.L., de Vries, P., DeBaun, M., Deka, R., DeMeo, D., Devine, S., Dinh, H., Doddapaneni, H., Duan, Q., Dugan-Perez, S., Duggirala, R., Durda, J.P., Dutcher, S.K., Eaton, C., Ekunwe, L., Boueiz, A.E., Ellinor, P., Emery, L., Erzurum, S., Farber, C., Farek, J., Fingerlin, T., Flickinger, M., Fornage, M., Franceschini, N., Frazar, C., Fu, M., Fullerton, S.M., Fulton, L., Gabriel, S., Gan, W., Gao, S., Gao, Y., Gass, M., Geiger, H., Gelb, B., Geraci, M., Germer, S., Gerszten, R., Ghosh, A., Gibbs, R., Gignoux, C., Gladwin, M., Glahn, D., Gogarten, S., Gong, D.W., Goring, H., Graw, S., Gray, K.J., Grine, D., Gross, C., Gu, C.C., Guan, Y., Gupta, N., Haas, D.M., Haessler, J., Hall, M., Han, Y., Hanly, P., Harris, D., Hawley, N.L., He, J., Heavner, B., Heckbert, S., Hernandez, R., Herrington, D., Hersh, C., Hidalgo, B., Hixson, J., Hobbs, B., Hokanson, J., Hong, E., Hoth, K., Hsiung, C.A., Hu, J., Hung, Y.J., Huston, H., Hwu, C.M., Irvin, M.R., Jackson, R., Jain, D., Jaquish, C., Johnsen, J., Johnson, A., Johnson, C., Johnston, R., Jones, K., Kang, H.M., Kaplan, R., Kardia, S., Kelly, S., Kenny, E., Kessler, M., Khan, A., Khan, Z., Kim, W., Kimoff, J., Kinney, G., Konkle, B., Kooperberg, C., Kramer, H., Lange, C., Lange, E., Lange, L., Laurie, C., LeBoff, M., Lee, J., Lee, S., Lee, W.J., LeFaive, J., Levine, D., Dan Levy, X., Lewis, J., Li, X., Li, Y., Lin, H., Lin, X., Liu, S., Liu, Y., Loos, RJF, Lubitz, S., Lunetta, K., Luo, J., Magalang, U., Mahaney, M., Make, B., Manichaikul, A., Manning, A., Manson, J., Martin, L., Marton, M., Mathai, S., Mathias, R., May, S., McArdle, P., McDonald, M.L., McFarland, S., McGarvey, S., McGoldrick, D., McHugh, C., McNeil, B., Mei, H., Meigs, J., Menon, V., Mestroni, L., Metcalf, G., Meyers, D.A., Mignot, E., Mikulla, J., Min, N., Minear, M., Minster, R.L., Mitchell, B.D., Moll, M., Momin, Z., Montasser, M.E., Montgomery, C., Muzny, D., Mychaleckyj, J.C., Nadkarni, G., Naik, R., Naseri, T., Natarajan, P., Nekhai, S., Nelson, S.C., Neltner, B., Nessner, C., Nickerson, D., Nkechinyere, O., North, K., O'Connell, J., O'Connor, T., Ochs-Balcom, H., Okwuonu, G., Pack, A., Paik, D.T., Pankow, J., Papanicolaou, G., Parker, C., Peloso, G., Peralta, J.M., Perez, M., Perry, J., Peters, U., Peyser, P., Phillips, L.S., Pleiness, J., Pollin, T., Post, W., Becker, J.P., Boorgula, M.P., Preuss, M., Psaty, B., Qasba, P., Qiao, D., Qin, Z., Rafaels, N., Raffield, L., Rajendran, M., Ramachandran, V.S., Rao, D.C., Rasmussen-Torvik, L., Ratan, A., Redline, S., Reed, R., Reeves, C., Regan, E., Reiner, A., Reupena, M.S., Rice, K., Robillard, R., Robine, N., Dan Roden, X., Roselli, C., Ruczinski, I., Runnels, A., Russell, P., Ruuska, S., Ryan, K., Sabino, E.C., Saleheen, D., Salimi, S., Salvi, S., Salzberg, S., Sandow, K., Sankaran, V.G., Santibanez, J., Schwander, K., Schwartz, D., Sciurba, F., Seidman, C., Seidman, J., Sériès, F., Sheehan, V., Sherman, S.L., Shetty, A., Sheu, W.H., Shoemaker, M.B., Silver, B., Silverman, E., Skomro, R., Smith, J., Smith, N., Smith, T., Smoller, S., Snively, B., Snyder, M., Sofer, T., Sotoodehnia, N., Stilp, A.M., Storm, G., Streeten, E., Su, J.L., Sung, Y.J., Sylvia, J., Szpiro, A., Taliun, D., Tang, H., Taub, M., Taylor, M., Taylor, S., Telen, M., Thornton, T.A., Threlkeld, M., Tinker, L., Tirschwell, D., Tishkoff, S., Tiwari, H., Tong, C., Tracy, R., Tsai, M., Vaidya, D., Van Den Berg, D., VandeHaar, P., Vrieze, S., Walker, T., Wallace, R., Walts, A., Wang, F.F., Wang, H., Wang, J., Watson, K., Watt, J., Weeks, D.E., Weinstock, J., Weir, B., Weiss, S.T., Weng, L.C., Wessel, J., Willer, C., Williams, K., Williams, L.K., Wilson, C., Wilson, J., Winterkorn, L., Wong, Q., Wu, J., Xu, H., Yanek, L., Yang, I., Yu, K., Zekavat, S.M., Zhang, Y., Zhao, S.X., Zhao, W., Zhu, X., Zody, M., Zoellner, S., and Consortium, NHLBI Trans-Omics for Precision Medicine (TOPMed)
- Subjects
haplotypes ,Population genetics ,Alleles ,Amino Acids/genetics ,Gene Frequency/genetics ,Genetic Variation ,Genetics, Population ,HIV Infections/genetics ,HIV-1/genetics ,HLA Antigens/genetics ,Haplotypes/genetics ,Host-Pathogen Interactions/genetics ,Humans ,Linkage Disequilibrium/genetics ,Physical Chromosome Mapping ,Reference Standards ,Selection, Genetic ,Viral Load ,HIV Infections ,Immunogenetics ,Human leukocyte antigen ,Major histocompatibility complex ,Linkage Disequilibrium ,Article ,Gene Frequency ,HLA Antigens ,Genetics ,mhc ,Amino Acids ,Allele ,biology ,Haplotype ,association ,genetic-basis ,micropolymorphism ,polygenic risk scores ,Evolutionary biology ,Host-Pathogen Interactions ,alleles ,loci ,HIV-1 ,biology.protein ,amino-acid ,identification ,Viral load ,Imputation (genetics) - Abstract
A high-resolution reference panel based on whole-genome sequencing data enables accurate imputation of HLA alleles across diverse populations and fine-mapping of HLA association signals for HIV-1 host response., Fine-mapping to plausible causal variation may be more effective in multi-ancestry cohorts, particularly in the MHC, which has population-specific structure. To enable such studies, we constructed a large (n = 21,546) HLA reference panel spanning five global populations based on whole-genome sequences. Despite population-specific long-range haplotypes, we demonstrated accurate imputation at G-group resolution (94.2%, 93.7%, 97.8% and 93.7% in admixed African (AA), East Asian (EAS), European (EUR) and Latino (LAT) populations). Applying HLA imputation to genome-wide association study data for HIV-1 viral load in three populations (EUR, AA and LAT), we obviated effects of previously reported associations from population-specific HIV studies and discovered a novel association at position 156 in HLA-B. We pinpointed the MHC association to three amino acid positions (97, 67 and 156) marking three consecutive pockets (C, B and D) within the HLA-B peptide-binding groove, explaining 12.9% of trait variance.
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