452 results on '"Blondeau P"'
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2. Indefinite causal order for quantum phase estimation with Pauli noise
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Chapeau-Blondeau, Francois
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Quantum Physics ,Electrical Engineering and Systems Science - Signal Processing - Abstract
This letter further explores the recent scheme of switched quantum channels with indefinite causal order applied to the reference metrological task of quantum phase estimation in the presence of noise. We especially extend the explorations, previously reported with depolarizing noise and thermal noise, to the class of Pauli noises, important to the qubit and not previously addressed. Nonstandard capabilities, not accessible with standard quantum phase estimation, are exhibited and analyzed, with significant properties that are specific to the Pauli noises, while other properties are found in common with the depolarizing noise or the thermal noise. The results show that the presence and the type of quantum noise are both crucial to the determination of the nonstandard capabilities from the switched channel with indefinite causal order, with a constructive action of noise reminiscent of stochastic resonance phenomena. The study contributes to a more comprehensive and systematic characterization of the roles and specificities of quantum noise in the operation of the novel devices of switched quantum channels with indefinite causal order., Comment: 8 pages, 2 figures, 22 references
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- 2023
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3. Full-Scale Fire Experiments on Cross-Laminated Timber Residential Enclosures Featuring Different Lining Protection Configurations
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Hopkin, Danny, Węgrzyński, Wojciech, Gorska, Carmen, Spearpoint, Michael, Bielawski, Jakub, Krenn, Harald, Sleik, Tim, Blondeau, Renaud, and Stapf, Gordian
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- 2024
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4. Navigating bioenergy horizons: a critical examination of Europe’s potential, with Belgium as a case study
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Colla, Martin, Verleysen, Kevin, Blondeau, Julien, and Jeanmart, Hervé
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- 2024
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5. Set-up of a pharmaceutical cell bank of Magnetospirillum gryphiswaldense MSR1 magnetotactic bacteria producing highly pure magnetosomes
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Chades, Théo, Le Fèvre, Raphaël, Chebbi, Imène, Blondeau, Karine, Guyot, François, and Alphandéry, Edouard
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- 2024
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6. Plasma cortisol and production of miRNAs in red drum (Sciaenops ocellatus) exposed to three distinct challenges
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Houdelet, Camille, Blondeau-Bidet, Eva, Mialhe, Xavier, Lallement, Stéphane, Devilliers, Samson, Falguière, Jean-Claude, and Geffroy, Benjamin
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- 2024
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7. The immediate-early protein 1 of human herpesvirus 6B interacts with NBS1 and inhibits ATM signaling
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Collin, Vanessa, Biquand, Élise, Tremblay, Vincent, Lavoie, Élise G, Blondeau, Andréanne, Gravel, Annie, Galloy, Maxime, Lashgari, Anahita, Dessapt, Julien, Côté, Jacques, Flamand, Louis, and Fradet-Turcotte, Amélie
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- 2024
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8. Navigating bioenergy horizons: a critical examination of Europe’s potential, with Belgium as a case study
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Martin Colla, Kevin Verleysen, Julien Blondeau, and Hervé Jeanmart
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Biomass ,Potential ,Forestry products ,Agricultural residues ,Energy crops ,Waste ,Renewable energy sources ,TJ807-830 ,Energy industries. Energy policy. Fuel trade ,HD9502-9502.5 - Abstract
Abstract Estimates of the energy potential of the different energy sources are essential for modelling energy systems. However, the potential of biomass is debatable due to the numerous dimensions and assumptions embedded. It is thus important to investigate further the final potential to understand their implications. Therefore, this study analyses European studies assessing biomass potential and proposes a critical discussion on the different results to converge to a realistic range of potentials for 2030. Biomass is divided into four categories: forestry products, agricultural residues, energy crops and other waste, each with sub-categories. Belgium is used as a case study to highlight the convergences and divergences of the studies. Having a national case study allows for more precise analyses through in-depth comparisons with national data and reports. The potential estimates are compared with the current production for each category in order to have a better view of the gap to be bridged. From these national perspectives, the European potential can be better apprehended. The results show that the realistic potentials for 2030 for Belgium and Europe are somewhat in the lower range of the estimates of the different studies: from 30 to 41 TWh and from 2000 to 2500 TWh, respectively. The forestry biomass is already well exploited with a slight potential increase, while the agricultural residues present the most significant potential increase. The realistic potential for energy crops in Belgium turned out to be close to the minimum estimates. Indeed, the implications of those crops are considerable regarding the agricultural structure and logistics. This article emphasises that no energy potential is neutral, as it involves a specific system in terms of agriculture, forestry or waste management, with broader social, economic or environmental implications. Consequently, using one estimate rather than another is not a trivial matter; it has an impact on the system being modelled from the outset.
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- 2024
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9. Groundwater level effects on greenhouse gas emissions from undisturbed peat cores
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Erne Blondeau, Gerard L. Velthof, Marius Heinen, Rob F.A. Hendriks, Anneke Stam, Jan J.H. van den Akker, Monne Weghorst, and Jan Willem van Groenigen
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Carbon dioxide ,Groundwater level ,Methane ,Nitrous oxide ,Peat oxidation ,Pore water ,Science - Abstract
Peat soils store a large part of the global soil carbon stock, which can potentially be lost when they are drained and taken into cultivation, resulting in CO2 emission and land subsidence. Groundwater level (GWL) management has been proposed to mitigate peat oxidation, but may lead to increased emissions of nitrous oxide (N2O) and methane (CH4).The aim of this experiment was to study trade-offs between greenhouse gas emissions from peat soils as a function of GWL. We incubated 1 m deep, 24 cm diameter undisturbed bare soil cores, after removal of the grass layer, from three contrasting Dutch grassland peat sites for 370 days at 16 °C. The cores were subjected to drying-wetting cycles, with the GWL varying between near the soil surface to 160 cm below the surface. We measured gas fluxes of CO2, N2O and CH4 from the soil surface, extracted pore water for DOC and mineral nitrogen analysis, and measured soil hydraulic and shrinkage characteristics.Emissions of CO2 increased after lowering the GWL, but showed different GWL-response curves during rewetting of the soil. On average, highest CO2 emissions of 1.5 g C·m−2 day−1 were found at a GWL of 80 cm below the surface. However, the 0 cm GWL was the only treatment with significantly lower CO2 emissions than other GWLs. Cumulative CO2 emissions differed significantly between sampling sites. Emissions of N2O showed a different response, peaking at GWL heights above −20 cm, particularly after a recent GWL rise. Though not significantly different, the highest N2O emissions were measured at the 0 cm GWL treatment. We confirmed this pattern for N2O in un-replicated soil cores with grass sward, although emission values were lower in these cores due to the root uptake of mineral nitrogen. CH4 emissions or −uptake remained low under any GWL. We conclude that raising the GWL is a successful strategy to reduce CO2 emissions from peat oxidation. However, raising the GWL close to the soil surface could lead to N2O emissions that negate any gains in terms of global warming potential. Our results suggest that raising the GWL in peat grasslands to −20 cm creates such a risk. A constant GWL at the surface (0 cm) would be preferential for mitigating both CO2 and N2O emissions, although such conditions don’t allow for agricultural grass production (mowing or grazing).
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- 2024
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10. Exploring the impact of stochastic transient phases on the NOx emissions from NH3/H2 mixture rich combustion in gas turbines
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Roeland De Meulenaere, Kevin Verleysen, Alessio Pappa, Kévin Bioche, Ward De Paepe, Laurent Bricteux, and Julien Blondeau
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Ammonia ,Hydrogen ,Stochastic process ,Gas turbine ,Transient ,Technology - Abstract
To reduce climate impact, switching to carbon-free electrofuels is an interesting option to reduce greenhouse gas emissions from electricity generation. The emission of other pollutants than CO2, such as nitrogen oxides (NOx), however, remains a concern. This research focuses on investigating the impact of transient phases, such as start-up and load change, on the NOx emissions expected from the rich combustion of mixtures of hydrogen and ammonia in gas turbines. Stochastic processes account for the inherent variability and uncertainty on the transient trajectories. The trajectories are simulated using a one-dimensional premixed flame model built in Cantera to compute the levels of pollutant formations, among others. The results indicate significant variations in the equivalence ratio, leading to high NOx emission peaks. The study concludes that the impact of the uncertainties related to the transient trajectories on the NOx emissions is low compared to the overall variations of the equivalence ratio, although they can accentuate observed peaks.
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- 2024
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11. IBD sharing patterns as intra-breed admixture indicators in small ruminants
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Blondeau Da Silva, Stéphane, Mwacharo, Joram M., Li, Menghua, Ahbara, Abulgasim, Muchadeyi, Farai Catherine, Dzomba, Edgar Farai, Lenstra, Johannes A., and Da Silva, Anne
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- 2024
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12. Set-up of a pharmaceutical cell bank of Magnetospirillum gryphiswaldense MSR1 magnetotactic bacteria producing highly pure magnetosomes
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Théo Chades, Raphaël Le Fèvre, Imène Chebbi, Karine Blondeau, François Guyot, and Edouard Alphandéry
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Magnetospirillum gryphiswaldense MSR1 ,Magnetosome ,Cell Bank ,Minimal medium ,Fed-batch cultivation ,Scale-up ,Microbiology ,QR1-502 - Abstract
Abstract We report the successful fabrication of a pharmaceutical cellular bank (PCB) containing magnetotactic bacteria (MTB), which belong to the Magnetospirillum gryphiswaldense MSR1 species. To produce such PCB, we amplified MTB in a minimal growth medium essentially devoid of other heavy metals than iron and of CMR (Carcinogenic, mutagenic and reprotoxic) products. The PCB enabled to acclimate MTB to such minimal growth conditions and then to produce highly pure magnetosomes composed of more than 99.9% of iron. The qualification of the bank as a PCB relies first on a preserved identity of the MTB compared with the original strain, second on genetic bacterial stability observed over 100 generations or under cryo-preservation for 16 months, third on a high level of purity highlighted by an absence of contaminating microorganisms in the PCB. Furthermore, the PCB was prepared under high-cell load conditions (9.108 cells/mL), allowing large-scale bacterial amplification and magnetosome production. In the future, the PCB could therefore be considered for commercial as well as research orientated applications in nanomedicine. We describe for the first-time conditions for setting-up an effective pharmaceutical cellular bank preserving over time the ability of certain specific cells, i.e. Magnetospirillum gryphiswaldense MSR1 MTB, to produce nano-minerals, i.e. magnetosomes, within a pharmaceutical setting.
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- 2024
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13. Enhancing Solubility and Bioefficacy of Stilbenes by Liposomal EncapsulationThe Case of Macasiamenene F
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Veronika Brezani, Nicolas Blondeau, Jan Kotouček, Eva Klásková, Karel Šmejkal, Jan Hošek, Eliška Mašková, Pavel Kulich, Vilailak Prachyawarakorn, Catherine Heurteaux, and Josef Mašek
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Chemistry ,QD1-999 - Published
- 2024
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14. Emissions and levelized cost of urban residential building heating: The Brussels perspective
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Jordi F.P. Cornette and Julien Blondeau
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Residential building heating ,Energy performance buildings ,Levelized cost of heat ,GHG emissions ,Air pollution ,Brussels-capital region ,Energy industries. Energy policy. Fuel trade ,HD9502-9502.5 - Abstract
Residential building heating stands as a significant energy consumer with substantial environmental implications. To facilitate a sustainable transition, it is essential to assess the emissions and costs associated with current heating practices. This study investigates the economical and environmental aspects of residential building heating in the Brussels-Capital Region (BCR), Belgium. Employing a bottom-up methodology that integrates Energy Performance of Buildings (EPB) certificates with specific emissions and cost data, the analysis evaluates the emissions (including direct and indirect greenhouse gases (GHG), NOx, SO2 and PM2.5) and the levelized cost of heat (LCOH) of the existing array of heating appliances in the BCR. The analysis reveals notable variations in emissions intensity and LCOH across diverse heating technologies, highlighting the intricate interplay between environmental sustainability and economic viability. Wood and electric-powered appliances demonstrate relatively low GHG emissions compared to fossil fuel appliances. Nonetheless, individual wood-fueled appliances exhibit elevated NOx and PM2.5 emissions compared to the current weighted average emissions intensity of the BCR. Furthermore, sensitivity analysis underscores the substantial influence of fuel price scenario on the most cost-effective heating technology. This study provides a balanced framework for informed decision-making on residential building heating, offering benchmarks for transitioning to a more sustainable urban heating infrastructure.
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- 2024
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15. Estimating the energy return on investment of forestry biomass: Impacts of feedstock, production techniques and post‐processing
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Martin Colla, Etienne deChambost, Louis Merceron, Julien Blondeau, Hervé Jeanmart, and Guillaume Boissonnet
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biomass ,BtL ,EROI ,PBtL ,wood pellets ,woodchips ,Renewable energy sources ,TJ807-830 ,Energy industries. Energy policy. Fuel trade ,HD9502-9502.5 - Abstract
Abstract The Energy Return On Investment (EROI) is a recognised indicator for assessing the relevance of an energy project in terms of net energy delivered to society. For woody biomass divergences remain on the right methodology to assess the EROI leading to large variations in the published estimates. This article presents an in‐depth discussion about the EROI of woody biomass in three different forms: woodchips, pellets and liquid fuels. The conceptualisation of EROI is further developed to reach a consistent definition for biomass post‐processed fuels. It considers, on top of the external energy investments, the grey energy associated with the energy used to enrich the fuel. With the proposed methodology, all woodchips have an EROI of the same order of magnitude, between 20 and 37, depending on forestry types, operations and machineries. For secondary residues, the first estimate is 170 if, as co‐products, no energy investment is allocated to the forestry operations and transport. On the basis of a mass allocation for forestry operations and transport, the EROI for secondary residues becomes of the same order of magnitude as that for wood chips. Woodchips can be further post‐processed into pellets or liquid fuels. Pellets have an EROI of 4–7 if the heat is externally supplied and 8–23 if internally supplied (self‐consumption of part of the raw material). Liquid fuels derived from primary wood and residues through gasification and Fischer‐Tropsch synthesis have an EROI between 4 and 16. Fuel enhancement with hydrogen (Power & Biomass to Liquids) impacts negatively the EROI due to the low EROI of hydrogen produced from renewable electricity. However, these fuels offer other advantages such as improved carbon efficiency. A correct estimate of EROI for forestry biomass, as proposed in this work, is a necessary dimension in assessing the suitability of a project.
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- 2024
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16. Conception continuée de la plateforme Néopass Stages : le point de vue des formateurs et formatrices et des utilisateurs et utilisatrices
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Marc Blondeau, Vanessa Hanin, François Lambert, and Catherine Van Nieuwenhoven
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Education ,Special aspects of education ,LC8-6691 - Published
- 2024
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17. Circulating MicroRNAs Indicative of Sex and Stress in the European Seabass (Dicentrarchus labrax): Toward the Identification of New Biomarkers
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Houdelet, Camille, Blondeau-Bidet, Eva, Estevez-Villar, Mathilde, Mialhe, Xavier, Hermet, Sophie, Ruelle, François, Dutto, Gilbert, Bajek, Aline, Bobe, Julien, and Geffroy, Benjamin
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- 2023
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18. A nested cohort 5-year Canadian surveillance of Gram-negative antimicrobial resistance for optimized antimicrobial therapy
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Blondeau, Joseph, Charles, Marthe Kenny, Loo, Vivian, Adam, Heather, Gonzalez Del Vecchio, Marcela, Ghakis, Christiane, O’Callaghan, Emma, and El Ali, Radwan
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- 2023
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19. RevGel-seq: instrument-free single-cell RNA sequencing using a reversible hydrogel for cell-specific barcoding
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Komatsu, Jun, Cico, Alba, Poncin, Raya, Le Bohec, Maël, Morf, Jörg, Lipin, Stanislav, Graindorge, Antoine, Eckert, Hélène, Saffarian, Azadeh, Cathaly, Léa, Guérin, Frédéric, Majello, Sara, Ulveling, Damien, Vayaboury, Anaïs, Fernandez, Nicolas, Dimitrova, Dilyana, Bussell, Xavier, Fourne, Yannick, Chaumat, Pierre, André, Barbara, Baldivia, Elodie, Godet, Ulysse, Guinin, Mathieu, Moretto, Vivien, Ismail, Joy, Caille, Olivier, Roblot, Natacha, Beaupère, Carine, Liboz, Alexandrine, Guillemain, Ghislaine, Blondeau, Bertrand, Walrafen, Pierre, and Edelstein, Stuart
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- 2023
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20. A CRISPR-Cas9 screen identifies EXO1 as a formaldehyde resistance gene
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Gao, Yuandi, Guitton-Sert, Laure, Dessapt, Julien, Coulombe, Yan, Rodrigue, Amélie, Milano, Larissa, Blondeau, Andréanne, Larsen, Nicolai Balle, Duxin, Julien P., Hussein, Samer, Fradet-Turcotte, Amélie, and Masson, Jean-Yves
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- 2023
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21. Reynolds-average Navier-Stokes turbulence models assessment: A case study of CH4/H2/N2-air reacting jet
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Yaniel Garcia Lovella, Idalberto Herrera Moya, Jeevan Jayasuriya, and Julien Blondeau
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Turbulence modelling ,Turbulence-chemistry interaction ,Reacting jet ,Jet's spreading rate ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Computational Fluid Dynamics has become a very powerful tool for developing engineering combustion devices, such as burners and furnaces. However, there are a wide variety of turbulence models, and some of them have proven to be more effective for some turbulent flow configurations than others. A reacting turbulent jet is a common flow configuration found in combustion engineering devices like burners. The present work assesses Reynolds-Average Navier-Stokes turbulence models, being tested on a CH4/H2/N2-Air reacting jet. Eight two-equation eddy-viscosity and three five-equation turbulence models were tested in the studied turbulent flow. Computational results were compared against experimental measurements in terms of flow field variables, mean mixture fraction, temperature, and species mass fraction. The findings suggest a strong influence of the turbulence model perforce on the mean mixture fraction as well as on the turbulence-chemistry interaction model. The modified version of the standard k-ε model proves to be the more reliable choice for this reactive flow configurations. Specially, where the flow patterns of the jet dictate the general flow physics. Near the fuel nozzle, both the Reynolds stress model with stress baseline k-ω (RSM-SBSL) and the standard k-ω model exhibit better agreement with experimental data than the conventional modified k-ε model. Moreover, findings from the standard modified k-ε model indicate a significant underestimation of spreading rates for radial samples in regions where jet spreading intensifies.
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- 2024
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22. Reduced-order modelling and operational optimization of a high-density district heating network
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A. Lasonder, R. Nouri, A.M. Chaudhry, M. Huart, A. Latiers, and J. Blondeau
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District heating network ,Reduce-order modelling ,Operational optimization ,Technology - Abstract
This study focuses on the reduced-order modeling and the operational optimization of the heating network of Université Libre de Bruxelles (ULB) to decrease its energy consumption and CO2 emissions. A reduced-order model of the network was developed, and alternatives to the current operation were investigated to minimize its operational cost. As a very first improvement, replacing the current fixed-speed pumps with optimally operated variable-speed pumps, the pumping energy can be reduced by up to 96 %. Further optimizing the network operating temperatures can lead to a reduction of the pumping energy, the heat losses and the CO2 emissions by 99 %, 19 %, and 7 %, respectively, compared to the current operation.
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- 2024
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23. A nested cohort 5-year Canadian surveillance of Gram-negative antimicrobial resistance for optimized antimicrobial therapy
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Joseph Blondeau, Marthe Kenny Charles, Vivian Loo, Heather Adam, Marcela Gonzalez Del Vecchio, Christiane Ghakis, Emma O’Callaghan, and Radwan El Ali
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Medicine ,Science - Abstract
Abstract We analyzed 5 years (2016–2020) of nested Canadian data from the Study for Monitoring Antimicrobial Resistance Trends (SMART) to identify pathogen predominance and antimicrobial resistance (AMR) patterns of adult Gram-negative infections in Canadian health care and to complement other public surveillance programs and studies in Canada. A total of 6853 isolates were analyzed from medical (44%), surgical (18%), intensive care (22%) and emergency units (15%) and from respiratory tract (36%), intra-abdominal (25%), urinary tract (24%) and bloodstream (15%) infections. Overall, E. coli (36%), P. aeruginosa (18%) and K. pneumoniae (12%) were the most frequent isolates and P. aeruginosa was the most common respiratory pathogen. 18% of Enterobacterales species were ESBL positive. Collective susceptibility profiles showed that P. aeruginosa isolates were highly susceptible (> 95%) to ceftolozane/tazobactam and colistin, though markedly less susceptible (58–74%) to other antimicrobials tested. Multi-drug resistance (MDR) was present in 10% of P. aeruginosa isolates and was more frequent in those from respiratory infections and from ICU than non-ICU locations. Of P. aeruginosa isolates that were resistant to combinations of ceftazidime, piperacillin/tazobactam and meropenem, 73–96% were susceptible to ceftolozane/tazobactam over the period of the study. These national data can now be combined with clinical prediction rules and genomic data to enable expert antimicrobial stewardship applications and guide treatment policies to optimize adult patient care.
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- 2023
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24. Bioavailability of Melatonin after Administration of an Oral Prolonged-Release Tablet and an Immediate-Release Sublingual Spray in Healthy Male Volunteers
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Ait Abdellah, Samira, Raverot, Véronique, Gal, Caroline, Guinobert, Isabelle, Bardot, Valérie, Blondeau, Claude, and Claustrat, Bruno
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- 2023
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25. Comparative In Vitro Killing by Pradofloxacin in Comparison to Ceftiofur, Enrofloxacin, Florfenicol, Marbofloxacin, Tildipirosin, Tilmicosin and Tulathromycin against Bovine Respiratory Bacterial Pathogens
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Joseph M. Blondeau and Shantelle D. Fitch
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killing ,pradofloxacin ,bovine respiratory disease ,drug concentrations ,antimicrobials ,MPC ,Biology (General) ,QH301-705.5 - Abstract
Pradofloxacin is the newest of the veterinary fluoroquinolones to be approved for use in animals—initially companion animals and most recently food animals. It has a broad spectrum of in vitro activity, working actively against Gram-positive/negative, atypical and some anaerobic microorganisms. It simultaneously targets DNA gyrase (topoisomerase type II) and topoisomerase type IV, suggesting a lower propensity to select for antimicrobial resistance. The purpose of this study was to determine the rate and extent of bacterial killing by pradofloxacin against bovine strains of Mannheimia haemolytica and Pasteurella multocida, in comparison with several other agents (ceftiofur, enrofloxacin, florfenicol, marbofloxacin, tildipirosin, tilmicosin and tulathromycin) using four clinically relevant drug concentrations: minimum inhibitory and mutant prevention drug concentration, maximum serum and maximum tissue drug concentrations. At the maximum serum and tissue drug concentrations, pradofloxacin killed 99.99% of M. haemolytica cells following 5 min of drug exposure (versus growth to 76% kill rate for the other agents) and 94.1–98.6% of P. multocida following 60–120 min of drug exposure (versus growth to 98.6% kill rate for the other agents). Statistically significant differences in kill rates were seen between the various drugs tested depending on drug concentration and time of sampling after drug exposure.
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- 2024
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26. Comparative Minimum Inhibitory and Mutant Prevention Drug Concentrations for Pradofloxacin and Seven Other Antimicrobial Agents Tested against Bovine Isolates of Mannheimia haemolytica and Pasteurella multocida
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Joseph M. Blondeau and Shantelle D. Fitch
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Mannheimia haemolytica ,Pasteurella multocida ,MIC/MPC ,pradofloxacin ,Medicine - Abstract
Pradofloxacin—a dual-targeting fluoroquinolone—is the most recent approved for use in food animals. Minimum inhibitory and mutant prevention concentration values were determined for pradofloxacin, ceftiofur, enrofloxacin, florfenicol, marbofloxacin, tildipirosin, tilmicosin, and tulathromycin. For M. haemolytica strains, MIC50/90/100 values were ≤0.016/≤0.016/≤0.016 and MPC50/90/100 values were 0.031/0.063/0.063; for P. multocida strains, the MIC50/90/100 values ≤0.016/≤0.016/0.031 and MPC50/90/100 ≤ 0.016/0.031/0.063 for pradofloxacin. The pradofloxacin Cmax/MIC90 and Cmax/MPC90 values for M. haemolytica and P. multocida strains, respectively, were 212.5 and 53.9 and 212.5 and 109.7. Similarly, AUC24/MIC90 and AUC24/MPC90 for M. haemolytica were 825 and 209.5, and for P. multocida, they were 825 and 425.8. Pradofloxacin would exceed the mutant selection window for >12–16 h. Pradofloxacin appears to have a low likelihood for resistance selection against key bovine respiratory disease bacterial pathogens based on low MIC and MPC values.
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- 2024
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27. RHOJ controls EMT-associated resistance to chemotherapy
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Debaugnies, Maud, Rodríguez-Acebes, Sara, Blondeau, Jeremy, Parent, Marie-Astrid, Zocco, Manuel, Song, Yura, de Maertelaer, Viviane, Moers, Virginie, Latil, Mathilde, Dubois, Christine, Coulonval, Katia, Impens, Francis, Van Haver, Delphi, Dufour, Sara, Uemura, Akiyoshi, Sotiropoulou, Panagiota A., Méndez, Juan, and Blanpain, Cédric
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- 2023
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28. Comparative evaluation of chemically and green synthesized zinc oxide nanoparticles: their in vitro antioxidant, antimicrobial, cytotoxic and anticancer potential towards HepG2 cell line
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Ashraf, Hajra, Meer, Bisma, Iqbal, Junaid, Ali, Joham Sarfraz, Andleeb, Anisa, Butt, Hira, Zia, Muhammad, Mehmood, Azra, Nadeem, Muhammad, Drouet, Samantha, Blondeau, Jean-Philippe, Giglioli-Guivarc’h, Nathalie, Liu, Chunzhao, Hano, Christophe, and Abbasi, Bilal Haider
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- 2023
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29. Bioavailability of Melatonin after Administration of an Oral Prolonged-Release Tablet and an Immediate-Release Sublingual Spray in Healthy Male Volunteers
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Samira Ait Abdellah, Véronique Raverot, Caroline Gal, Isabelle Guinobert, Valérie Bardot, Claude Blondeau, and Bruno Claustrat
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Therapeutics. Pharmacology ,RM1-950 - Abstract
Abstract Background The benefit of exogenous melatonin is based on its bioavailability, which depends on the galenic form, the route of administration, the dosage, and the individual absorption and rate of hepatic metabolism. Objective The objective of this study is to investigate the bioavailability of melatonin after administration of an oral prolonged-release tablet (PR form) and an immediate-release sublingual spray (IR form). The main metabolite of melatonin, 6-sulfatoxymelatonin (6-SMT), was also measured, which has not been done in previous studies. Its determination is important as an index of the hepatic transformation of melatonin. Methods In this single-center, open-label, randomized, crossover study, 14 healthy male volunteers received one tablet of the PR form (1.9 mg melatonin) or two sprays of the IR form (1 mg melatonin) during two visits separated by a washout period. Blood samples were collected over 7 and 9 h for the IR and PR form, respectively, to determine the main pharmacokinetic parameters. Results The observed kinetics were consistent with those expected for immediate and prolonged-release forms. Pulverization of the spray resulted in an early, high plasma melatonin peak (C max: 2332 ± 950 pg/mL; T max: 23.3 ± 6.5 min), whereas tablet intake produced a lower peak (C max: 1151 ± 565 pg/mL; T max: 64.2 ± 44.2 min; p
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- 2023
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30. Experimental characterization of a spiral heat exchanger for waste water heat recovery from partially filled sewage pipes
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Z. Mokhtar, J. Vanden Berghe, and J. Blondeau
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Waste water heat recovery ,Spiral heat exchanger ,Partially filled pipes ,Correction factor ,LMTD ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
This paper focuses on the experimental characterization of horizontal, spiral heat exchangers used for heat recovery from sewage pipes. Such non-intrusive heat exchanger configurations are appealing for this application, but they often exhibit reduced heat exchange performances compared to more compact designs. To compare the performance of this configuration with that of an ideal counter-flow heat exchanger, a representative test setup was constructed. As the sewer pipes are generally not completely filled, tests were conducted using three different fillings (100%, 50%, 33%) and a filling parameter z was introduced in the heat transfer equations. Correction factors to be applied in the Logarithmic Mean Temperature Difference (LMTD) design method for this specific spiral configuration were derived from the test results. It was found that the filling of the sewer pipe has minimal impact on the correction factor, which ranges between 0.78 and 0.83. The average value of 0.81 is recommended for design purposes.
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- 2023
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31. Le lien à la culture renouvelé par les mobilités informationnelles
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Mathieu DUBUIS, Christophe LARDEUR, Daniel SCHMITT, Virginie BLONDEAU, and Sylvie LELEU-MERVIEL
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ICT ,culture ,mobility ,immobilities ,informational mobilities ,Information technology ,T58.5-58.64 ,Electronic computers. Computer science ,QA75.5-76.95 - Abstract
How can inaccessible cultural heritage be made available to immobile or distant audiences, to meet their cultural needs? Information and communication technologies offer instrumental responses to this new challenge. This type of resource promotes informational mobility as a substitute for real mobility.After introducing the concept of informational mobility and quickly reviewing existing solutions, the body of the article considers digital devices that do more than simply transpose a situation marked by physical inaccessibility. This is the case for the survival of certain heritages, notably immaterial, confronted with the impossibility of physical encounter due to the disappearance or death of their witnesses.The second part of the article addresses historical testimony, and illustrates it using the example of a holographic device implemented in the United States for witnesses to the Shoah. The same device was used to record and share the testimony of mine survivors in the framework of the ANR MémoMines, the subject of the third part of the article. This latter context allowed an experimental study with the public. Beyond providing a simple technical answer to the initial question, this exploratory study provides clues as to how the experience of temporal informational mobility is experienced/appreciated by the public.
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- 2023
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32. RevGel-seq: instrument-free single-cell RNA sequencing using a reversible hydrogel for cell-specific barcoding
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Jun Komatsu, Alba Cico, Raya Poncin, Maël Le Bohec, Jörg Morf, Stanislav Lipin, Antoine Graindorge, Hélène Eckert, Azadeh Saffarian, Léa Cathaly, Frédéric Guérin, Sara Majello, Damien Ulveling, Anaïs Vayaboury, Nicolas Fernandez, Dilyana Dimitrova, Xavier Bussell, Yannick Fourne, Pierre Chaumat, Barbara André, Elodie Baldivia, Ulysse Godet, Mathieu Guinin, Vivien Moretto, Joy Ismail, Olivier Caille, Natacha Roblot, Carine Beaupère, Alexandrine Liboz, Ghislaine Guillemain, Bertrand Blondeau, Pierre Walrafen, and Stuart Edelstein
- Subjects
Medicine ,Science - Abstract
Abstract Progress in sample preparation for scRNA-seq is reported based on RevGel-seq, a reversible-hydrogel technology optimized for samples of fresh cells. Complexes of one cell paired with one barcoded bead are stabilized by a chemical linker and dispersed in a hydrogel in the liquid state. Upon gelation on ice the complexes are immobilized and physically separated without requiring nanowells or droplets. Cell lysis is triggered by detergent diffusion, and RNA molecules are captured on the adjacent barcoded beads for further processing with reverse transcription and preparation for cDNA sequencing. As a proof of concept, analysis of PBMC using RevGel-seq achieves results similar to microfluidic-based technologies when using the same original sample and the same data analysis software. In addition, a clinically relevant application of RevGel-seq is presented for pancreatic islet cells. Furthermore, characterizations carried out on cardiomyocytes demonstrate that the hydrogel technology readily accommodates very large cells. Standard analyses are in the 10,000-input cell range with the current gelation device, in order to satisfy common requirements for single-cell research. A convenient stopping point after two hours has been established by freezing at the cell lysis step, with full preservation of gene expression profiles. Overall, our results show that RevGel-seq represents an accessible and efficient instrument-free alternative, enabling flexibility in terms of experimental design and timing of sample processing, while providing broad coverage of cell types.
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- 2023
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33. Method for assessing the potential of miscanthus on marginal lands for high temperature heat demand: The case studies of France and Belgium
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Martin Colla, Davide Tonelli, Astley Hastings, Diederik Coppitters, Julien Blondeau, and Hervé Jeanmart
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biomass potential ,energy crops ,high temperature heat ,marginal lands ,miscanthus ,supply chain ,Renewable energy sources ,TJ807-830 ,Energy industries. Energy policy. Fuel trade ,HD9502-9502.5 - Abstract
Abstract Energy crops on marginal lands are seen as an interesting option to increase biomass contribution to the primary energy mix. However, in the literature there is currently a lack of integrated assessments of margin land availability, energy crop production potential and supply chain optimisation. Assessing the potential and the cost of these resources in a given region is therefore a difficult task. This work also emphasises the importance on a clear definition and discussion about marginal lands and the related ethical issues embedded in the concept to ensure positive societal impacts of the results. This study proposes a methodology to estimate and analyse, in terms of economic costs, the potential of miscanthus grown on marginal lands from the production to the final point of use. Different datasets are assembled and a supply chain optimisation model is developed to minimize the total cost of the system. Miscanthus is used as a representative energy crop for the Belgian and French case studies. High temperature heat demand is considered as final use. The miscanthus can be traded by truck either in the form of chips or pellets. The results show that the miscanthus on marginal lands could supply high temperature heat up to 38 TWh in France and 1.4 TWh in Belgium with an average cost of around 50 €/t. The different sensitivity analyses showed that the yield variation has the strongest influence on the final cost, together with the distances and the cost of production of miscanthus. The main pattern observed is the local consumption of miscanthus chips and export of the surplus (if any) to the neighbouring regions. Pellets are only of marginal interest for France and are never observed for Belgium. Distances and availability of sufficient feedstocks are the two main parameters impacting the production of pellets.
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- 2023
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34. An Alternative to the Oversimplifying Benford’s Law in Experimental Fields
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Silva, Stéphane Blondeau Da
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- 2022
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35. Low transmission risk of African swine fever virus between wild boar infected by an attenuated isolate and susceptible domestic pigs
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Aleksandra Kosowska, Jose A. Barasona, Sandra Barroso-Arévalo, Luisa Blondeau Leon, Estefanía Cadenas-Fernández, and Jose M. Sánchez-Vizcaíno
- Subjects
African swine fever ,transmission ,wild boar ,domestic pig ,interspecific ,interactions ,Veterinary medicine ,SF600-1100 - Abstract
African swine fever (ASF) is a lethal infectious disease that affects domestic and wild pigs. This complex virus has already affected five continents and more than 70 countries and is considered to be the main threat to the global swine industry. The disease can potentially be transmitted directly through contact with infectious animals, or indirectly by means of contaminated feed or environments. Nevertheless, the knowledge regarding the transmission patterns of different ASF virus isolates at the wildlife-livestock interface is still limited. We have, therefore, assessed the potential transmission of an attenuated ASF virus isolate between infectious wild boar and directly exposed domestic pig. We registered 3,369 interspecific interactions between animals, which were brief and mostly initiated by wild boar. The major patterns observed during the study were head-to-head contact owing to sniffing, thus suggesting a high probability of pathogen transmission. However, only one of the five domestic pigs had a short period of viremia and became serologically positive for ASF virus antibodies. It was additionally discovered that the wild boar did not transmit the virulent virus isolate to the domestic pigs, which suggests that the presence of attenuated ASF virus isolates in affected areas may control the spreading of other more virulent isolates. These outcomes may help make decisions related to large-scale targeted management actions against ASF in field conditions.
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- 2023
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36. A CRISPR-Cas9 screen identifies EXO1 as a formaldehyde resistance gene
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Yuandi Gao, Laure Guitton-Sert, Julien Dessapt, Yan Coulombe, Amélie Rodrigue, Larissa Milano, Andréanne Blondeau, Nicolai Balle Larsen, Julien P. Duxin, Samer Hussein, Amélie Fradet-Turcotte, and Jean-Yves Masson
- Subjects
Science - Abstract
Formaldehyde can trigger formation of interstrand crosslinks (ICLs) or DNA-protein crosslinks (DPCs) leading to genome instability. Here the authors show that EXO1 limits replication stress and DNA damage to counteract formaldehyde-induced genome instability.
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- 2023
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37. Global update on the in vitro activity of tigecycline and comparators against isolates of Acinetobacter baumannii and rates of resistant phenotypes (2016–2018)
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Harald Seifert, Joseph Blondeau, Kai Lucaßen, and Eric A. Utt
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Tigecycline ,Acinetobacter baumannii ,Antimicrobial surveillance ,Antimicrobial resistance ,Microbiology ,QR1-502 - Abstract
Objectives: This study presents 2016–2018 in vitro antimicrobial activity data and rates of resistant phenotypes for clinical isolates of Acinetobacter baumannii from Africa/Middle East, Asia/South Pacific, Europe, Latin America, and North America. Methods: A total of 4320 A. baumannii isolates were collected across all regions between 2016 and 2018. The in vitro antimicrobial activities of amikacin, colistin, levofloxacin, meropenem, and tigecycline were determined using the broth microdilution methodology of the Clinical and Laboratory Standards Institute. MICs were interpreted using the European Committee on Antimicrobial Susceptibility Testing (EUCAST) breakpoints (version 11.0). Rates of subsets that were resistant to amikacin, colistin, levofloxacin, and meropenem, according to EUCAST breakpoints, are also presented. Results: In each region, tigecycline and colistin were active against isolates of A. baumannii (MIC90 values, 1 or 2 mg/L) and the lowest rate of resistance was to colistin (1.2%–7.3%). The rates of resistance to the panel of agents were generally lower among A. baumannii from North America (1.3%–42.7%), compared with the other regions. Fewer than 11% of meropenem-resistant A. baumannii were also resistant to colistin. The rates of amikacin-, levofloxacin- and meropenem-resistant A. baumannii were lowest in North America and mostly higher in Africa/Middle East and Latin America. Conclusion: In each geographical region, tigecycline and colistin maintained good in vitro antimicrobial activity against isolates of A. baumannii, including antimicrobial-resistant subsets. The higher rates of meropenem-resistant isolates, particularly in Africa/Middle East and Latin America, require continued monitoring because of the scarcity of effective treatment options.
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- 2022
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38. Low net carbonate accretion characterizes Florida’s coral reef
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John T. Morris, Ian C. Enochs, Nicole Besemer, T. Shay Viehman, Sarah H. Groves, Jeremiah Blondeau, Cory Ames, Erica K. Towle, Laura Jay W. Grove, and Derek P. Manzello
- Subjects
Medicine ,Science - Abstract
Abstract Coral reef habitat is created when calcium carbonate production by calcifiers exceeds removal by physical and biological erosion. Carbonate budget surveys provide a means of quantifying the framework-altering actions of diverse assemblages of marine species to determine net carbonate production, a single metric that encapsulates reef habitat persistence. In this study, carbonate budgets were calculated for 723 sites across the Florida Reef Tract (FRT) using benthic cover and parrotfish demographic data from NOAA’s National Coral Reef Monitoring Program, as well as high-resolution LiDAR topobathymetry. Results highlight the erosional state of the majority of the study sites, with a trend towards more vulnerable habitat in the northern FRT, especially in the Southeast Florida region (− 0.51 kg CaCO3 m−2 year−1), which is in close proximity to urban centers. Detailed comparison of reef types reveals that mid-channel reefs in the Florida Keys have the highest net carbonate production (0.84 kg CaCO3 m−2 year−1) and indicates that these reefs may be hold-outs for reef development throughout the region. This study reports that Florida reefs, specifically their physical structure, are in a net erosional state. As these reefs lose structure, the ecosystem services they provide will be diminished, signifying the importance of increased protections and management efforts to offset these trends.
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- 2022
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39. Natural cortisol production is not linked to the sexual fate of European sea bass
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Goikoetxea, Alexander, Servili, Arianna, Houdelet, Camille, Mouchel, Olivier, Hermet, Sophie, Clota, Fréderic, Aerts, Johan, Fernandino, Juan Ignacio, Allal, François, Vandeputte, Marc, Blondeau-Bidet, Eva, and Geffroy, Benjamin
- Published
- 2022
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40. Unlocking Therapeutic Synergy: Tailoring Drugs for Comorbidities such as Depression and Diabetes through Identical Molecular Targets in Different Cell Types
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Thierry Coppola, Guillaume Daziano, Ilona Legroux, Sophie Béraud-Dufour, Nicolas Blondeau, and Patricia Lebrun
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depression ,diabetes ,pharmacology ,cell signaling ,receptor ,channel ,Cytology ,QH573-671 - Abstract
Research in the field of pharmacology aims to generate new treatments for pathologies. Nowadays, there are an increased number of chronic disorders that severely and durably handicap many patients. Among the most widespread pathologies, obesity, which is often associated with diabetes, is constantly increasing in incidence, and in parallel, neurodegenerative and mood disorders are increasingly affecting many people. For years, these pathologies have been so frequently observed in the population in a concomitant way that they are considered as comorbidities. In fact, common mechanisms are certainly at work in the etiology of these pathologies. The main purpose of this review is to show the value of anticipating the effect of baseline treatment of a condition on its comorbidity in order to obtain concomitant positive actions. One of the implications would be that by understanding and targeting shared molecular mechanisms underlying these conditions, it may be possible to tailor drugs that address both simultaneously. To this end, we firstly remind readers of the close link existing between depression and diabetes and secondly address the potential benefit of the pleiotropic actions of two major active molecules used to treat central and peripheral disorders, first a serotonin reuptake inhibitor (Prozac ®) and then GLP-1R agonists. In the second part, by discussing the therapeutic potential of new experimental antidepressant molecules, we will support the concept that a better understanding of the intracellular signaling pathways targeted by pharmacological agents could lead to future synergistic treatments targeting solely positive effects for comorbidities.
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- 2023
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41. Low net carbonate accretion characterizes Florida’s coral reef
- Author
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Morris, John T., Enochs, Ian C., Besemer, Nicole, Viehman, T. Shay, Groves, Sarah H., Blondeau, Jeremiah, Ames, Cory, Towle, Erica K., Grove, Laura Jay W., and Manzello, Derek P.
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- 2022
- Full Text
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42. Brain death/death by neurologic criteria: What you need to know.
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Larson, Nicholas J., Dries, David J., Blondeau, Benoit, and Rogers, Frederick B.
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- 2024
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43. Uncertainty Quantification for Thermodynamic Simulations with High-Dimensional Input Spaces Using Sparse Polynomial Chaos Expansion: Retrofit of a Large Thermal Power Plant
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Roeland De Meulenaere, Diederik Coppitters, Ale Sikkema, Tim Maertens, and Julien Blondeau
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uncertainty quantification ,biomass ,retrofit ,CHP ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
The assessment of the future thermodynamics performance of a retrofitted heat and power production unit is prone to many uncertainties due to the large number of parameters involved in the modeling of all its components. To carry out uncertainty quantification analysis, alternatives to the traditional Monte Carlo method must be used due to the large stochastic dimension of the problem. In this paper, sparse polynomial chaos expansion (SPCE) is applied to the retrofit of a large coal-fired power plant into a biomass-fired combined heat and power unit to quantify the main drivers and the overall uncertainty on the plant’s performance. The thermodynamic model encompasses over 180 components and 1500 parameters. A methodology combining the use of SPCE and expert judgment is proposed to narrow down the sources of uncertainty and deliver reliable probability distributions for the main key performance indicators (KPIs). The impact of the uncertainties on each input parameter vary with the considered KPI and its assessment through the computation of Sobol’ indices. For both coal and biomass operations, the most impactful input parameters are the composition of the fuel and its heating value. The uncertainty on the performance and steam quality parameters is not much affected by the retrofit. Key furnace parameters exhibit a skewed probability distribution with large uncertainties, which is a strong attention point in terms of boiler operation and maintenance.
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- 2023
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44. Future Temporal Reference in L2 French Spoken in the Laurentian Region: Contrasting Naturalistic and Instructed Context
- Author
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Blondeau, Hélène and Lemée, Isabelle
- Abstract
This study focuses on L2 French spoken in two different Laurentian settings in Canada: L2 French spoken by anglophones who have developed bilingual community practices in Montreal, where French is the majority language; and L2 French spoken by anglophones who have learned French in a formal context in Ontario, where French is a minority language. The results highlight the same repertoire of variants for both groups. The analysis shows a clear preference for periphrastic future coupled with limited use of the inflectional future. Although futurate present is the third variant used by Anglo-Montrealers, it comes in second place for L2 speakers in Ontario. Results reveal the differential effect of various linguistic factors, such as polarity, temporal distance, and adverbial presence. The analysis also sheds light on the role of social environment in the variability displayed, and on the effect of intense contact on the use of the inflectional future.
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- 2020
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45. First Two Cases of Conservative Treatment for Extreme Proximal Penile Fracture of the Corpora Cavernosa
- Author
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Alicia Blondeau, Aurélie Grandmougin, Clément Larose, and Charles Mazeaud
- Subjects
Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
Penile fracture is a urological emergency, and surgery is usually recommended to prevent complications. However, proximal locations are scarce and not well investigated. We present two rare penile fractures involving the proximal corpora cavernosa with an original conservative strategy to manage this clinical presentation. Twenty-five- and thirty-eight-year-old men with no previous medical history were admitted to the emergency room for penile trauma during sexual intercourse a few months apart. Both presented with “butterfly pattern” ecchymosis with a palpable hematoma on the perineum. They had no hematuria or voiding dysfunction. Ultrasound found a hematoma and a tear of the proximal corpus cavernosum for the younger one. Then, an MRI confirmed a longitudinal fracture of the right corpus cavernosum for the first patient and left for the second, without urethral injury. In agreement with the patients facing this atypical presentation, we proposed a conservative treatment with analgesics, monitoring, and advice to stop sexual activity for three weeks. After six weeks and four weeks, respectively, we performed a clinical evaluation and a second MRI that found no residual tear or hematoma. The IIEF-5 questionnaire was 24/25 and 25/25. The patients were clinically symptom-free at 8 and 11 months of follow-up. Extreme proximal fracture of the corpus cavernosum can be managed conservatively in selected situations. MRI is useful for decision-making by confirming the diagnosis and location to avoid surgery.
- Published
- 2023
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46. NR2F2 controls malignant squamous cell carcinoma state by promoting stemness and invasion and repressing differentiation
- Author
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Mauri, Federico, Schepkens, Corentin, Lapouge, Gaëlle, Drogat, Benjamin, Song, Yura, Pastushenko, Ievgenia, Rorive, Sandrine, Blondeau, Jeremy, Golstein, Sophie, Bareche, Yacine, Miglianico, Marie, Nkusi, Erwin, Rozzi, Milena, Moers, Virginie, Brisebarre, Audrey, Raphaël, Maylis, Dubois, Christine, Allard, Justine, Durdu, Benoit, Ribeiro, Floriane, Sotiriou, Christos, Salmon, Isabelle, Vakili, Jalal, and Blanpain, Cédric
- Published
- 2021
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47. The eukaryotic initiation factor 5A (eIF5A1), the molecule, mechanisms and recent insights into the pathophysiological roles
- Author
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Michel Tauc, Marc Cougnon, Romain Carcy, Nicolas Melis, Thierry Hauet, Luc Pellerin, Nicolas Blondeau, and Didier F. Pisani
- Subjects
Biotechnology ,TP248.13-248.65 ,Biology (General) ,QH301-705.5 ,Biochemistry ,QD415-436 - Abstract
Abstract Since the demonstration of its involvement in cell proliferation, the eukaryotic initiation factor 5A (eIF5A) has been studied principally in relation to the development and progression of cancers in which the isoform A2 is mainly expressed. However, an increasing number of studies report that the isoform A1, which is ubiquitously expressed in normal cells, exhibits novel molecular features that reveal its new relationships between cellular functions and organ homeostasis. At a first glance, eIF5A can be regarded, among other things, as a factor implicated in the initiation of translation. Nevertheless, at least three specificities: (1) its extreme conservation between species, including plants, throughout evolution, (2) its very special and unique post-translational modification through the activating-hypusination process, and finally (3) its close relationship with the polyamine pathway, suggest that the role of eIF5A in living beings remains to be uncovered. In fact, and beyond its involvement in facilitating the translation of proteins containing polyproline residues, eIF5A is implicated in various physiological processes including ischemic tolerance, metabolic adaptation, aging, development, and immune cell differentiation. These newly discovered physiological properties open up huge opportunities in the clinic for pathologies such as, for example, the ones in which the oxygen supply is disrupted. In this latter case, organ transplantation, myocardial infarction or stroke are concerned, and the current literature defines eIF5A as a new drug target with a high level of potential benefit for patients with these diseases or injuries. Moreover, the recent use of genomic and transcriptomic association along with metadata studies also revealed the implication of eIF5A in genetic diseases. Thus, this review provides an overview of eIF5A from its molecular mechanism of action to its physiological roles and the clinical possibilities that have been recently reported in the literature.
- Published
- 2021
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48. Characterization of Polybacterial versus Monobacterial Conjunctivitis Infections in Pediatric Subjects Across Multiple Studies and Microbiological Outcomes with Besifloxacin Ophthalmic Suspension 0.6%
- Author
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Blondeau JM, Proskin HM, Sanfilippo CM, and DeCory HH
- Subjects
pediatric ,conjunctivitis ,polybacterial ,besifloxacin ,minimum inhibitory concentration ,Ophthalmology ,RE1-994 - Abstract
Joseph M Blondeau,1 Howard M Proskin,2 Christine M Sanfilippo,3 Heleen H DeCory3 1Clinical Microbiology, Royal University Hospital, Saskatoon, SK, Canada; 2Howard M. Proskin & Associates, Rochester, NY, USA; 3Pharmaceutical Medical Affairs, Bausch + Lomb, Rochester, NY, USACorrespondence: Heleen H DeCoryPharmaceutical Medical Affairs, 1400 North Goodman Street, Rochester, NY, 14609, USATel +1 585 338-8161Email Heleen.DeCory@bausch.comIntroduction: The choice of empiric therapy for bacterial conjunctivitis should be guided by an awareness of typical causative pathogen distributions. Bacterial conjunctivitis can be polybacterial, although pediatric-specific data are lacking.Methods: This was a post-hoc analysis of data in pediatric subjects (1– 17 years) from five bacterial conjunctivitis trials evaluating besifloxacin ophthalmic solution 0.6%.Results: Of the 730 pediatric subjects with culture-confirmed conjunctivitis, nearly one-fourth (23.6%) had polybacterial infections and three-fourths (76.4%) had monobacterial infections at baseline. In both polybacterial and monobacterial infections, the most prevalent organisms were Haemophilus influenzae, Streptococcus pneumoniae, Staphylococcus aureus, and Streptococcus mitis/S. mitis group. In polybacterial versus monobacterial infections, S. mitis/S. mitis group (8.7% vs 4.3%; P=0.032) and Moraxella catarrhalis (4.7% vs 0.5%; P< 0.001) were identified more frequently, whereas S. pneumoniae (14.0% vs 28.1%; P< 0.001) was identified less frequently, as the dominant infecting species. MICs for individual species were similar for tested antibiotics regardless of polybacterial or monobacterial infection, except Staphylococcus epidermidis for which fluoroquinolone MICs were ≥ 3 dilutions higher for isolates of this species sourced from polybacterial compared to monobacterial infections. Treatment with besifloxacin resulted in microbial eradication in 79.1% of polybacterial and 92.3% of monobacterial infections (P≤ 0.005 vs vehicle).Discussion: One in four pediatric bacterial conjunctivitis infections is polybacterial, highlighting the need for a broad-spectrum antibiotic when choosing empiric therapy.Keywords: pediatric, conjunctivitis, polybacterial, besifloxacin, minimum inhibitory concentration
- Published
- 2021
49. BeyondBenford R Package to compare Benford's and BDS's Distributions
- Author
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Stéphane Blondeau Da Silva
- Subjects
benford's law ,digits ,experimental data ,r-package ,Electronic computers. Computer science ,QA75.5-76.95 - Abstract
The package \textbf{BeyondBenford} compares the goodness of fit of Benford’s and Blondeau Da Silva’s (BDS's) digit distributions in a given dataset. It first enables to check whether the data distribution is consistent with theoretical distributions highlighted by Blondeau Da Silva or not; indeed, this ideal theoretical distribution must be at least approximately followed by the data for the use of BDS’s model to be well-founded. It also allows to draw histograms of digit frequencies or probabilities (and their confidence or prediction intervals), both observed in the dataset and given by the two theoretical approaches. Finally, it proposes to quantify the goodness of fit of these laws via Pearson’s chi-squared tests.
- Published
- 2021
50. A new family of structurally conserved fungal effectors displays epistatic interactions with plant resistance proteins.
- Author
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Noureddine Lazar, Carl H Mesarich, Yohann Petit-Houdenot, Nacera Talbi, Ines Li de la Sierra-Gallay, Emilie Zélie, Karine Blondeau, Jérôme Gracy, Bénédicte Ollivier, Françoise Blaise, Thierry Rouxel, Marie-Hélène Balesdent, Alexander Idnurm, Herman van Tilbeurgh, and Isabelle Fudal
- Subjects
Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
Recognition of a pathogen avirulence (AVR) effector protein by a cognate plant resistance (R) protein triggers a set of immune responses that render the plant resistant. Pathogens can escape this so-called Effector-Triggered Immunity (ETI) by different mechanisms including the deletion or loss-of-function mutation of the AVR gene, the incorporation of point mutations that allow recognition to be evaded while maintaining virulence function, and the acquisition of new effectors that suppress AVR recognition. The Dothideomycete Leptosphaeria maculans, causal agent of oilseed rape stem canker, is one of the few fungal pathogens where suppression of ETI by an AVR effector has been demonstrated. Indeed, AvrLm4-7 suppresses Rlm3- and Rlm9-mediated resistance triggered by AvrLm3 and AvrLm5-9, respectively. The presence of AvrLm4-7 does not impede AvrLm3 and AvrLm5-9 expression, and the three AVR proteins do not appear to physically interact. To decipher the epistatic interaction between these L. maculans AVR effectors, we determined the crystal structure of AvrLm5-9 and obtained a 3D model of AvrLm3, based on the crystal structure of Ecp11-1, a homologous AVR effector candidate from Fulvia fulva. Despite a lack of sequence similarity, AvrLm5-9 and AvrLm3 are structural analogues of AvrLm4-7 (structure previously characterized). Structure-informed sequence database searches identified a larger number of putative structural analogues among L. maculans effector candidates, including the AVR effector AvrLmS-Lep2, all produced during the early stages of oilseed rape infection, as well as among effector candidates from other phytopathogenic fungi. These structural analogues are named LARS (for Leptosphaeria AviRulence and Suppressing) effectors. Remarkably, transformants of L. maculans expressing one of these structural analogues, Ecp11-1, triggered oilseed rape immunity in several genotypes carrying Rlm3. Furthermore, this resistance could be suppressed by AvrLm4-7. These results suggest that Ecp11-1 shares a common activity with AvrLm3 within the host plant which is detected by Rlm3, or that the Ecp11-1 structure is sufficiently close to that of AvrLm3 to be recognized by Rlm3.
- Published
- 2022
- Full Text
- View/download PDF
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