1. Identification of variants associated with hard clam, Mercenaria mercenaria, resistance to Quahog Parasite Unknown disease
- Author
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Roxanna Smolowitz, Ximing Guo, Isabelle Boutet, Arnaud Tanguy, Sarah Farhat, Diane Murphy, Emmanuelle Pales Espinosa, Gregg Rivara, Bassem Allam, Institut de Biologie François JACOB (JACOB), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Station biologique de Roscoff (SBR), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Marine Sciences Research Center, Stony Brook University [SUNY] (SBU), State University of New York (SUNY)-State University of New York (SUNY), Haskin Shellfish Research Laboratory (HSRL), Rutgers, The State University of New Jersey [New Brunswick] (RU), Rutgers University System (Rutgers)-Rutgers University System (Rutgers), Adaptation et diversité en milieu marin (ADMM), Institut national des sciences de l'Univers (INSU - CNRS)-Station biologique de Roscoff (SBR), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Marine Biological Laboratory, Marine resources Center, and School of Marine and Atmospheric Sciences [Stony Brook] (SoMAS)
- Subjects
0106 biological sciences ,animal structures ,Parasitic Diseases, Animal ,[SDV]Life Sciences [q-bio] ,Single-nucleotide polymorphism ,Polymorphism, Single Nucleotide ,01 natural sciences ,03 medical and health sciences ,Mercenaria ,Genetics ,Animals ,SNP ,Parasite hosting ,Parasites ,Gene ,ComputingMilieux_MISCELLANEOUS ,Disease Resistance ,030304 developmental biology ,0303 health sciences ,Genome ,biology ,biology.organism_classification ,Genetic marker ,Enzootic ,Hard clam ,010606 plant biology & botany - Abstract
Severe losses in aquacultured and wild hard clam (Mercenaria mercenaria) stocks have been previously reported in the northeastern United States due to a protistan parasite called QPX (Quahog Parasite Unknown). Previous work demonstrated that clam resistance to QPX is under genetic control. This study identifies single nucleotide polymorphism (SNP) associated with clam survivorship from two geographically segregated populations, both deployed in an enzootic site. The analysis contrasted samples collected before and after undergoing QPX-related mortalities and relied on a robust draft clam genome assembly. ~200 genes displayed significant variant enrichment at each sampling point in both populations, including 18 genes shared between both populations. Markers from both populations were identified in genes related to apoptosis pathways, protein-protein interaction, receptors, and signaling. This research begins to identify genetic markers associated with clam resistance to QPX disease, leading the way for the development of resistant clam stocks through marker-assisted selection.
- Published
- 2020