1. A composite transcriptional signature differentiates responses towards closely related herbicides in Arabidopsis thaliana and Brassica napus
- Author
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Jay R. Reichman, Anton R. Schäffner, Michael Mäder, Thomas Pfleeger, David M. Olszyk, Georg Haberer, Felipe Eduardo Aceituno Aceituno, Lidia S. Watrud, Gerhard Welzl, Malay Das, and Rodrigo A. Gutiérrez
- Subjects
0106 biological sciences ,medicine.drug_class ,Arabidopsis ,Plant Science ,Gene expression signature ,Genes, Plant ,01 natural sciences ,Article ,03 medical and health sciences ,Species Specificity ,Botany ,medicine ,Genetics ,Arabidopsis thaliana ,Amino Acids ,Secondary metabolism ,Gene ,Cell wall modification ,030304 developmental biology ,0303 health sciences ,Acetolactate synthase ,5-enolpyruvylshikimate-3-phosphate synthase ,biology ,Herbicides ,Gene Expression Profiling ,Brassica napus ,General Medicine ,biology.organism_classification ,Sulfonylurea ,Gene expression profiling ,Acetolactate Synthase ,Differentiation of herbicides ,Biochemistry ,Transfer from model to crop plant ,biology.protein ,3-Phosphoshikimate 1-Carboxyvinyltransferase ,Agronomy and Crop Science ,010606 plant biology & botany - Abstract
In this study, genome-wide expression profiling based on Affymetrix ATH1 arrays was used to identify discriminating responses of Arabidopsis thaliana to five herbicides, which contain active ingredients targeting two different branches of amino acid biosynthesis. One herbicide contained glyphosate, which targets 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS), while the other four herbicides contain different acetolactate synthase (ALS) inhibiting compounds. In contrast to the herbicide containing glyphosate, which affected only a few transcripts, many effects of the ALS inhibiting herbicides were revealed based on transcriptional changes related to ribosome biogenesis and translation, secondary metabolism, cell wall modification and growth. The expression pattern of a set of 101 genes provided a specific, composite signature that was distinct from other major stress responses and differentiated among herbicides targeting the same enzyme (ALS) or containing the same chemical class of active ingredient (sulfonylurea). A set of homologous genes could be identified in Brassica napus that exhibited a similar expression pattern and correctly distinguished exposure to the five herbicides. Our results show the ability of a limited number of genes to classify and differentiate responses to closely related herbicides in A. thaliana and B. napus and the transferability of a complex transcriptional signature across species. Electronic supplementary material The online version of this article (doi:10.1007/s11103-009-9590-y) contains supplementary material, which is available to authorized users.
- Published
- 2009