1. A novel HIV-1 inhibitor that blocks viral replication and rescues APOBEC3s by interrupting vif/CBFβ interaction
- Author
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Yanxin Gai, Chu Wang, Sizhu Duan, Yanan Song, Lina Meng, Shiqi Wang, Bin Yu, Jiaxin Wu, Xianghui Yu, Ying Zhang, Nan Gao, and Song Wang
- Subjects
0301 basic medicine ,Cytidine deaminase activity ,Anti-HIV Agents ,viruses ,Protein Data Bank (RCSB PDB) ,HIV Infections ,Virus Replication ,Microbiology ,Biochemistry ,Core Binding Factor beta Subunit ,Cell Line ,Small Molecule Libraries ,03 medical and health sciences ,vif Gene Products, Human Immunodeficiency Virus ,Humans ,Cytotoxic T cell ,APOBEC Deaminases ,Protein Interaction Maps ,Molecular Biology ,APOBEC3G ,030102 biochemistry & molecular biology ,biology ,Chemistry ,virus diseases ,Cell Biology ,biochemical phenomena, metabolism, and nutrition ,Viral infectivity factor ,Small molecule ,Ubiquitin ligase ,Cell biology ,Molecular Docking Simulation ,030104 developmental biology ,Viral replication ,Host-Pathogen Interactions ,Proteolysis ,HIV-1 ,biology.protein - Abstract
HIV remains a health challenge worldwide, partly because of the continued development of resistance to drugs. Therefore, it is urgent to find new HIV inhibitors and targets. Apolipoprotein B mRNA-editing catalytic polypeptide-like 3 family members (APOBEC3) are important host restriction factors that inhibit HIV-1 replication by their cytidine deaminase activity. HIV-1 viral infectivity factor (Vif) promotes proteasomal degradation of APOBEC3 proteins by recruiting the E3 ubiquitin ligase complex, in which core-binding factor β (CBFβ) is a necessary molecular chaperone. Interrupting the interaction between Vif and CBFβ can release APOBEC3 proteins to inhibit HIV-1 replication and may be useful for developing new drug targets for HIV-1. In this study, we identified a potent small molecule inhibitor CBFβ/Vif-3 (CV-3) of HIV-1 replication by employing structure-based virtual screening using the crystal structure of Vif and CBFβ (PDB: 4N9F) and validated CV-3's antiviral activity. We found that CV-3 specifically inhibited HIV-1 replication (IC(50) = 8.16 µm; 50% cytotoxic concentration >100 µm) in nonpermissive lymphocytes. Furthermore, CV-3 treatment rescued APOBEC3 family members (human APOBEC3G (hA3G), hA3C, and hA3F) in the presence of Vif and enabled hA3G packaging into HIV-1 virions, which resulted in Gly-to-Ala hypermutations in viral genomes. Finally, we used FRET to demonstrate that CV-3 inhibited the interaction between Vif and CBFβ by simultaneously forming hydrogen bonds with residues Gln-67, Ile-102, and Arg-131 of CBFβ. These findings demonstrate that CV-3 can effectively inhibit HIV-1 by blocking the interaction between Vif and CBFβ and that this interaction can serve as a new target for developing HIV-1 inhibitors.
- Published
- 2020
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