1. Development of ADPribosyl ubiquitin analogues to study enzymes involved in legionella infection
- Author
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Donghyuk Shin, Gerbrand J. van der Heden van Noort, Ivan Đikić, Hermann Schindelin, Ines Tomašković, Dmitri V. Filippov, Robbert Q. Kim, Alexis Gonzalez, Mohit Misra, and Huib Ovaa
- Subjects
Legionella ,Hydrolases ,Context (language use) ,Ubiquitin-Activating Enzymes ,010402 general chemistry ,chemistry ,01 natural sciences ,Legionella pneumophila ,Catalysis ,ADP-Ribosylation ,ADPribosylation ,Ubiquitin ,Bacterial Proteins ,Hydrolase ,ubiquitin ,post-translational modifications ,Humans ,chemistry.chemical_classification ,biology ,Full Paper ,010405 organic chemistry ,Effector ,Organic Chemistry ,Ubiquitination ,General Chemistry ,UBA1 ,Full Papers ,biology.organism_classification ,0104 chemical sciences ,3. Good health ,Enzyme ,HEK293 Cells ,Biochemistry ,click chemistry ,biology.protein ,Legionnaires' Disease - Abstract
Legionnaires’ disease is caused by infection with the intracellularly replicating Gram‐negative bacterium Legionella pneumophila. This pathogen uses an unconventional way of ubiquitinating host proteins by generating a phosphoribosyl linkage between substrate proteins and ubiquitin by making use of an ADPribosylated ubiquitin (UbADPr) intermediate. The family of SidE effector enzymes that catalyze this reaction is counteracted by Legionella hydrolases, which are called Dups. This unusual ubiquitination process is important for Legionella proliferation and understanding these processes on a molecular level might prove invaluable in finding new treatments. Herein, a modular approach is used for the synthesis of triazole‐linked UbADPr, and analogues thereof, and their affinity towards the hydrolase DupA is determined and hydrolysis rates are compared to natively linked UbADPr. The inhibitory effects of modified Ub on the canonical eukaryotic E1‐enzyme Uba1 are investigated and rationalized in the context of a high‐resolution crystal structure reported herein. Finally, it is shown that synthetic UbADPr analogues can be used to effectively pull‐down overexpressed DupA from cell lysate., Modular modifications: Analogues of ADPribosylated ubiquitin, including a nonhydrolyzable methylenebisphosphonate version, are constructed and subsequently applied to investigate (de‐)ubiquitinating enzymes involved in Legionella infection. These probes are used in the study of the bacterial effector DupA and the human ubiquitin activating E1 enzyme.
- Published
- 2020