1. A bioinformatic prediction of antigen presentation from SARS‐CoV‐2 spike protein revealed a theoretical correlation of HLA‐DRB1*01 with COVID‐19 fatality in Mexican population: An ecological approach
- Author
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Juan Moisés Ocampo-Godínez, Ethel García-Latorre, Jacqueline Oliva-Ramírez, Diana Laura Pacheco-Olvera, Martha Carnalla-Cortés, Julia Moreno-Manjón, Nancy López-Olmedo, José Pablo Romero-López, Arturo Reyes-Sandoval, Jiménez-Zamudio L, Brian Bernal-Alferes, and María Lilia Domínguez-López
- Subjects
Antigen presentation ,Epitopes, T-Lymphocyte ,Human leukocyte antigen ,Biology ,Virus ,Epitope ,03 medical and health sciences ,0302 clinical medicine ,Virology ,Genetic variation ,Case fatality rate ,Humans ,030212 general & internal medicine ,Allele ,Mexico ,HLA-DRB1 ,Research Articles ,Antigen Presentation ,SARS-CoV-2 ,COVID-19 ,Computational Biology ,Genetic Variation ,Protein Structure, Tertiary ,Hospitalization ,Infectious Diseases ,Spike Glycoprotein, Coronavirus ,030211 gastroenterology & hepatology ,Research Article ,HLA-DRB1 Chains - Abstract
SARS‐CoV‐2 infection is causing a pandemic disease that is reflected in challenging public health problems worldwide. HLA‐based epitope prediction and its association with disease outcomes provide an important base for treatment design. A bioinformatic prediction of T cell epitopes and their restricted HLA class I and II alleles was performed to obtain immunogenic epitopes and HLA alleles from the spike protein of the SARS‐CoV‐2 virus. Also, a correlation with the predicted fatality rate of hospitalized patients in 28 states of Mexico was done. Here, we describe a set of ten highly immunogenic epitopes, together with different HLA alleles that can efficiently present these epitopes to T cells. Most of these epitopes are located within the S1 subunit of the spike protein, suggesting that this area is highly immunogenic. A statistical negative correlation was found between the frequency of HLA‐DRB1*01 and the fatality rate in hospitalized patients in Mexico. This article is protected by copyright. All rights reserved.
- Published
- 2020