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International audience; The intensification of biological processes coping with salt stress became a major issue to mitigate land degradation. The Sine-Saloum Delta in Senegal is characterized by salt-affected soils with vegetation dominated by salt-tolerant grass Sporobolus robustus and shrubs like Prosopis juliflora. Plant experiments in controlled conditions suggested that arbuscular mycorrhizal (AM) fungi might be the key actors of facilitation process observed between S. robustus and P. juliflora, but the AM fungal community determinants are largely unknown. The current field-based study aimed at (1) characterizing the environmental drivers (rhizosphere physico-chemical properties, plant type and season) of the AM fungal community along an environmental gradient and (2) identifying the AM fungal taxa that might explain the S. robustus-mediated benefits to P. juliflora. Glomeraceae predominated in the two plants, but a higher richness was observed for S. robustus. The pH and salinity were the main drivers of AM fungal community associated with the two plants, negatively impacting richness and diversity. However, while a negative impact was also observed on mycorrhizal colonization for S. robustus, P. juliflora showed opposite colonization patterns. Furthermore, no change was observed in terms of AM fungal community dissimilarity between the two plants along the environmental gradient as would be expected according to the stress-gradient and complementary hypotheses when a facilitation process occurs. However, changes in intraspecific diversity of shared AM fungal community between the two plants were observed, highlighting 23 AM fungal OTUs associated with both plants and the highest salinity levels. Consequently, the increase of their abundance and frequency along the environmental gradient might suggest their potential role in the facilitation process that can take place between the two plants. Their use in ecological engineering could also represent promising avenues for improving vegetation restoration in saline Senegalese's lands.

International audience; Aim Mountains host complex ecosystems whose wide range of ecological conditions over small geographical distances makes them biodiversity hotspots. To ensure their long-term conservation, a better understanding of the interaction between climate change and modifications in land use is necessary. Most studies have focused on only one of these factors at a time, leading to incomplete predictions. In this study, we explored the relative contribution of both recreative activities and climate change on the population dynamics of the black grouse (Tetrao tetrix), an emblematic cold-adapted species of the Alps.Methods We used data from a network of 47 monitoring sites dispersed around the French Alps and surveyed since the 1980s or 1990s. We estimated black grouse population growth rates using state-space models and tested for effects of biotic and abiotic pressures on both long-term trends and inter-annual variations in these rates.Results Population trajectories were strongly heterogeneous in space; nevertheless, a general decline at the edge of the black grouse distribution area was revealed in the southern pre-Alps. We found very little influence of hunting and new ski lift cables installation on inter-annual variability in population growth rate. In contrast, our results suggest strong impact of climatic conditions and phenology. While temperature positively influenced growth rate, precipitation had a negative effect. Early snowmelt and vegetation season were correlated with high positive values of annual population growth rates.Main conclusions Birds in mountain habitats may be drastically affected by ongoing climate change, perhaps to a greater extent than by an increase in recreational activities. However, other human activities in the mountains (such as animal grazing or forest exploitation) that were not taken into consideration in this study might also have a strong impact on habitat structure and indirectly affect populations' growth.

International audience; Questions. What are the functional trade-offs of vascular plant species in global alpine ecosystems? How is functional variation related to vegetation zones, climatic groups and biogeographic realms? What is the relative contribution of macroclimate and evolutionary history in shaping the functional variation of alpine plant communities? Location. Global. Methods. We compiled a data set of alpine vegetation with 5,532 geo-referenced plots, 1,933 species and six plant functional traits. We used principal component analysis to quantify functional trade-offs among species and trait probability density to assess the functional dissimilarity of alpine vegetation in different vegetation zones, climatic groups and biogeographic realms. We used multiple regression on distance matrices to model community functional dissimilarity against environmental and phylogenetic dissimilarity, controlling for geographic distance. Results. The first two PCA axes explained 66% of the species’ functional variation and were related to the leaf and stem economic spectra, respectively. Trait probability density was largely independent of vegetation zone and macroclimate but differed across biogeographic realms. The same pattern emerged for both species pool and community levels. The effects of environmental and phylogenetic dissimilarities on community functional dissimilarity had similar magnitude, while the effect of geographic distance was negligible. Conclusions. Plant species in alpine areas reflect the global variation of plant function, but with a predominant role of resource use strategies. Current macroclimate exerts a limited effect on alpine vegetation, mostly acting at the community level in combination with evolutionary history. Global alpine vegetation is functionally unrelated to the vegetation zones in which it is embedded, exhibiting strong functional convergence across regions

International audience; Climate change is related to an increase in frequency and intensity of extreme events such as heatwaves. It is well established that such events may worsen the current world-wide biodiversity decline. In many organisms, heat stress is associated with direct physiological perturbations and could lead to a decrease of fitness. In contrast to endotherms, heat stress resistance has been poorly investigated in heterotherms; especially in insects, in which the internal physiological mechanisms available to regulate body temperature are almost negligible making them sensitive to extreme temperature variations.Wild bees are crucial pollinators for wild plants and crops. Among them, bumblebees are experiencing a strong decline across the world. Therefore, the ongoing global decline of these insect pollinators partly due to climate change could cause major economic issues.Here we assess how simulated heatwaves impact fertility and attractiveness (key parameters of sustainability) of bumblebee males. We used three model species: Bombus terrestris, a widespread and warm-adapted species, B. magnus and B. jonellus, two declining and cold-adapted species.We highlight that heat shock (40 degrees C) negatively affects sperm viability and sperm DNA integrity only in the two cold-adapted species. Heat shock can also impact the structure of cephalic labial glands and the production of pheromones only in the declining species.The specific disruption in key reproductive traits we identify following simulated heatwave conditions could provide one important mechanistic explanation for why some pollinators are in decline through climate change.A free Plain Language Summary can be found within the Supporting Information of this article.

To understand how and to what extent single or multiple perturbations can alter the relationships between the abundances of different nitrifier groups and nitrification, soil microcosms were exposed to six disturbance treatments: a heat shock, cold shock, or control conditions applied to undisturbed soils or to soils that had previously been subjected to a first heat shock. We monitored the recovery of the abundances of four main nitrifier groups (ammonia-oxidizing archaea and bacteria, AOA and AOB, respectively, and Nitrobacter and Nitrospira nitrite oxidizers) as well as nitrification activity for 25 days. AOA were sensitive to cold shocks, whereas AOB were not; the latter were sensitive to heat shock. Despite the variations, both groups were resilient to the first disturbance. In contrast, Nitrobacter was affected by both disturbances, whereas Nitrospira was resistant to both shocks. Prior exposure to a heat shock affected each group’s responses as well as the relationships between them. For example, AOB were more vulnerable to heat shock in pre-exposed soils, whereas under the same circumstances, AOA were resilient. Nitrification activity was resistant to the first disturbances, but a legacy effect was observed, and nitrification was highest in Heat-Heat and lowest in Heat-Cold treatments. Overall, our study shows that within soil nitrifiers, temporal patterns and legacy effects interact to result in complex disturbance responses.

International audience; Understanding the ecological and behavioral variation of primates is central to improving conservation strategies. Studies of chimpanzees (Pan troglodytes) have shown marked behavioral variability across a wide range of habitats. By comparison, bonobos (Pan paniscus) occur mainly in continuous forest sites, and socioecological models explaining behavioral differences between the two species are based on the assumption that bonobo habitat is richer and more stable than chimpanzee habitats. The objective of this study was to assess bonobo ecology in a forest-savanna mosaic. We specifically explored 1) bonobo home range size, habitat use, and dietary composition; 2) forest fragmentation in a bonobo community's home range; and 3) seasonality of dietary diversity, habitat use, and spatial distribution. Using 2 years of observational data on location, habitat type, and dietary composition, we found that the bonobo community's home range size, density, and dietary diversity were similar to those observed in continuous forest sites. Bonobos used areas with lower forest fragmentation than the surrounding areas and preferentially spent time in forested habitats. During the dry season, bonobos consumed a lower diversity of fruit species, spent more time in sparse forest with Marantaceae understory, and were closer to the seasonal center of their home range than during the rainy season. Our results contribute to our understanding of behavioral variation in bonobos and suggest that forest-savanna mosaic is valuable to bonobo conservation.

International audience; The ecology of the young stages of allis shad Alosa alosa is poorly documented, although they can be exposed to many pressures during their freshwater phase and their downstream migration. When passing through systems such as the Gironde-Garonne-Dordogne watershed (GGD, SW France), they can be subjected to high temperatures and low levels of oxygen (hypoxia). The aim of this work is to assess the tolerance of young Alosa alosa at four ages (c. 10, 30, 60 and 85 days old) by challenging them to different temperatures (18, 22, 26 and 28C) together with decreasing oxygen saturation levels (from 100% to 30%). Survival of the 10-day-old individuals was not influenced by oxy-thermic conditions, but high stress levels were detected and perhaps this age class was too fragile regarding the constraint of the experimental design. Survival at 30 and at 60 days old was negatively influenced by the highest temperatures tested alone (from 26C and from 28C, respectively) but no effect was detected at 85 days old up to 28C. A combined effect of temperature and oxygen level was highlighted, with heat accelerating survival decrease when associated with oxygen level depletion: essentially, survival was critical (

International audience; Protection and restoration of species in the wild may require conservation breeding programs under genetic management to minimize deleterious effects of genetic changes that occur in captivity, while preserving populations' genetic diversity and evolutionary resilience. Here, through interannual pedigree analyses, we first assessed the efficiency of a 21‐year genetic management, including minimization of mean kinship, inbreeding avoidance, and regular addition of founders, of a conservation breeding program targeting on Houbara bustard (Chlamydotis undulata undulata) in Morocco. Secondly, we compared pedigree analyses, the classical way of assessing and managing genetic diversity in captivity, to molecular analyses based on seven microsatellites. Pedigree‐based results indicated an efficient maintenance of the genetic diversity (99% of the initial genetic diversity retained) while molecular‐based results indicated an increase in allelic richness and an increase in unbiased expected heterozygosity across time. The pedigree‐based average inbreeding coefficient F remained low (between 0.0004 and 0.003 in 2017) while the proportion of highly inbred individuals (F > .1) decreased over time and reached 0.2% in 2017. Furthermore, pedigree‐based F and molecular‐based individual multilocus heterozygosity were weakly negatively correlated, (Pearson's r = −.061 when considering all genotyped individuals), suggesting that they cannot be considered as alternatives, but rather as complementary sources of information. These findings suggest that a strict genetic monitoring and management, based on both pedigree and molecular tools can help mitigate genetic changes and allow to preserve genetic diversity and evolutionary resilience in conservation breeding programs.

The rumen harbors a complex microbial mixture of archaea, bacteria, protozoa and fungi that efficiently breakdown plant biomass and its complex dietary carbohydrates into soluble sugars that can be fermented and subsequently converted into metabolites and nutrients utilized by the host animal. While rumen bacterial populations have been well documented, only a fraction of the rumen eukarya are taxonomically and functionally characterized, despite the recognition that they contribute to the cellulolytic phenotype of the rumen microbiota. To investigate how anaerobic fungi actively engage in digestion of recalcitrant fiber that is resistant to degradation, we resolved genome-centric metaproteome and metatranscriptome datasets generated from switchgrass samples incubated for 48 hours in nylon bags within the rumen of cannulated dairy cows. Across a gene catalogue covering anaerobic rumen bacteria, fungi and viruses, a significant portion of the detected proteins originated from fungal populations. Intriguingly, the carbohydrate-active enzyme (CAZyme) profile suggested a domain-specific functional specialization, with bacterial populations primarily engaged in the degradation of polysaccharides such as hemicellulose, whereas fungi were inferred to target recalcitrant cellulose structures via the detection of a number of endo- and exo-acting enzymes belonging to the glycoside hydrolase (GH) family 5, 6, 8 and 48. Notably, members of the GH48 family were amongst the highest abundant CAZymes and detected representatives from this family also included dockerin domains that are associated with fungal cellulosomes. A eukaryote-selected metatranscriptome further reinforced the contribution of uncultured fungi in the ruminal degradation of recalcitrant fibers. These findings elucidate the intricate networks ofin siturecalcitrant fiber deconstruction, and importantly, suggests that the anaerobic rumen fungi contribute a specific set of CAZymes that complement the enzyme repertoire provided by the specialized plant cell wall degrading rumen bacteria.

Some sacoglossan sea slugs incorporate intracellular functional algal chloroplasts, a process termed kleptoplasty. “Stolen” chloroplasts (kleptoplasts) can remain photosynthetically active up to several months, contributing to animal nutrition. Whether this contribution occurs by means of translocation of photosynthesis-derived metabolites from functional kleptoplasts to the animal host or by simple digestion of such organelles remains controversial. Imaging of 13C and 15N assimilation over a 12-h incubation period of Elysia viridis sea slugs showed a light-dependent incorporation of carbon and nitrogen, observed first in digestive tubules and followed by a rapid accumulation into chloroplast-free organs. Furthermore, this work revealed the presence of 13C-labeled long-chain fatty acids (FA) typical of marine invertebrates, such as arachidonic (20:4n-6) and adrenic (22:4n-6) acids. The time frame and level of 13C- and 15N-labeling in chloroplast-free organs indicate that photosynthesis-derived primary metabolites were made available to the host through functional kleptoplasts. The presence of specific 13C-labeled long-chain FA, absent from E. viridis algal food, indicates animal based-elongation using kleptoplast-derived FA precursors. Finally, carbon and nitrogen were incorporated in organs and tissues involved in reproductive functions (albumin gland and gonadal follicles), implying a putative role of kleptoplast photosynthesis in the reproductive fitness of the animal host.

This article is dedicated to the memory of Jean-François Cosson, recently deceased.; International audience; Understanding the driving forces that control vole population dynamics requires identifying bacterial parasites hosted by the voles and describing their dynamics at the community level. To this end, we used high-throughput DNA sequencing to identify bacterial parasites in cyclic populations of montane water voles that exhibited a population outbreak and decline in 2014–2018. An unexpectedly large number of 155 Operational Taxonomic Units (OTUs) representing at least 13 genera in 11 families was detected. Individual bacterial richness was higher during declines, and vole body condition was lower. Richness as estimated by Chao2 at the local population scale did not exhibit clear seasonal or cycle phase-related patterns, but at the vole meta-population scale, exhibited seasonal and phase-related patterns. Moreover, bacterial OTUs that were detected in the low density phase were geographically widespread and detected earlier in the outbreak; some were associated with each other. Our results demonstrate the complexity of bacterial community patterns with regard to host density variations, and indicate that investigations about how parasites interact with host populations must be conducted at several temporal and spatial scales: multiple times per year over multiple years, and at both local and long-distance dispersal scales for the host(s) under consideration.

Plants can detect cues associated with the risk of future herbivory and modify defence phenotypes accordingly; however, our current understanding is limited both with respect to the range of early warning cues to which plants respond and the nature of the responses. Here we report that exposure to volatile emissions from plant tissues infested with herbivore eggs promotes stronger defence responses to subsequent herbivory in two Brassica species. Furthermore, exposure to these volatile cues elicited an apparent shift from growth to reproduction in Brassica nigra, with exposed plants exhibiting increased flower and seed production, but reduced leaf production, relative to unexposed controls. Our results thus document plant defence priming in response to a novel environmental cue, oviposition-induced plant volatiles, while also showing that plant responses to early warning cues can include changes in both defence and life-history traits.

According to the preference-performance hypothesis (PPH), also known as ‘mother-knows-best hypothesis’, herbivorous insects prefer those plants for oviposition, which yield the best offspring performance. Yet, most studies testing the PPH neglect the possibility that plant responses to insect eggs may affect both egg survival and larval performance. Here, we tested the PPH by studying responses of seven Brassicaceae plant species to oviposition by two cabbage white species. When including the egg phase, our study supports the ‘mother-knows-best hypothesis’: larvae of Pieris rapae (solitary) or P. brassicae (gregarious) gained most weight on those plant species which had received most eggs (B. nigra or B. montana, respectively). However, our experiments did not reveal any relationship between oviposition preference and egg survival. Brassicaceous species are known to respond to these butterfly eggs with a hypersensitive response (HR)-like necrosis, which can lower egg survival. Pieris eggs frequently induced necrosis in five of the tested plant species. Survival of clustered P. brassicae eggs was unaffected by HR-like in four of the five species. Therefore, our experiments did not reveal any relationship between P. brassicae egg survival and oviposition preference. Females of P. rapae preferred oviposition on plant species which most frequently showed HR-like necrosis. Remarkably, although egg survival was lower on HR-like plants, larval biomass was higher compared to plants without a necrosis. We conclude that egg survival does not seem to be a deciding factor for oviposition choices. However, egg-mediated plant responses might be important to explain the PPH of the two Pieris species.Lay summaryEgg-laying preferences of herbivorous insects can often be linked to offspring performance. Commonly, the fate of insect eggs and the plant responses to the eggs have been ignored when studying the link between preference and performance. By including the egg phase, our study supports the ‘mother-knows-best hypothesis’, explained by butterfly oviposition and associated egg and larval performances on different plant species. We especially found that egg-mediated responses seem a deciding factor for butterfly oviposition choices.

Addressing the ecological and evolutionary processes underlying biodiversity patterns is essential to identify the mechanisms shaping community structure and function. In bacteria, the formation of new ecologically distinct populations (ecotypes) is proposed as one of the main drivers of diversification. New ecotypes arise when mutations in key functional genes or acquisition of new metabolic pathways by horizontal gene transfer allow the population to exploit new resources, permitting their coexistence with the parental population. We previously reported the presence of microcystin-producing organisms of the Microcystis aeruginosa complex (toxic MAC) through an 800-km environmental gradient ranging from freshwater to estuarine-marine waters in South America. We hypothesize that the success of toxic MAC in such a gradient is due to the existence of very closely related populations that are ecologically distinct (ecotypes), each specialized to a specific arrangement of environmental variables. Here, we analyzed toxic MAC genetic diversity through quantitative PCR (qPCR) and high-resolution melting analysis (HRMA) of a functional gene (mcyJ, microcystin synthetase cluster). We explored the variability of the mcyJ gene along the environmental gradient by multivariate classification and regression trees (mCART). Six groups of mcyJ genotypes were distinguished and associated with different combinations of water temperature, conductivity, and turbidity. We propose that each mcyJ variant associated with a defined environmental condition is an ecotype (or species) whose relative abundances vary according to their fitness in the local environment. This mechanism would explain the success of toxic MAC in such a wide array of environmental conditions. IMPORTANCE Organisms of the Microcystis aeruginosa complex form harmful algal blooms (HABs) in nutrient-rich water bodies worldwide. MAC HABs are difficult to manage owing to the production of potent toxins (microcystins) that resist water treatment. In addition, the role of microcystins in the ecology of MAC organisms is still elusive, meaning that the environmental conditions driving the toxicity of the bloom are not clear. Furthermore, the lack of coherence between morphology-based and genomic-based species classification makes it difficult to draw sound conclusions about when and where each member species of the MAC will dominate the bloom. Here, we propose that the diversification process and success of toxic MAC in a wide range of water bodies involves the generation of ecotypes, each specialized in a particular niche, whose relative abundance varies according to its fitness in the local environment. This knowledge can improve the generation of accurate prediction models of MAC growth and toxicity, helping to prevent human and animal intoxication.

International audience; The pesticide risk assessment for earthworms is currently performed using standardized tests, the model species Eisenia fetida, and the analyses of the data obtained are performed with ad hoc statistical tools. We assessed the impact of two fungicides on the entire growth pattern of the earthworm species Aporrectodea caliginosa, which is highly representative of agricultural fields. Individuals of three different ages (from hatching to 56 days old) were exposed to Cuprafor micro(R) (copper oxychloride) and Swing(R) Gold (dimoxystrobin and epoxiconazole). Data were analyzed with an energy-based toxicodynamic model coupled with a toxicokinetic model. The copper fungicide caused a drastic growth inhibition once the no effect concentration (NEC), estimated at 65 mg kg(-1) of copper, was exceeded. The Swing(R) Gold negatively affected the growth with NEC values estimated at 0.387 mg kg(-1) and 0.128 mg kg(-1) for the dimoxystrobin and the epoxiconazole in this fungicide formulation, respectively. The time-profile of the effects on A. caliginosa individuals was fully accounted for by the model, whatever their age of exposure. Furthermore, toxicity data analyses, supported by measurements of fungicide concentrations in earthworm at the end of the experiment, allowed bettering understanding of the mechanisms of action of the fungicides towards earthworm growth.

The sterile insect technique is an environment friendly control tactic and is very species specific. It is not a stand-alone technique and has been used mostly in combination with other control tactics within an area-wide integrated pest management strategy. For a period of eight years, the direct impact of a campaign to eradicate a population of the tsetse fly Glossina palpalis gambiensis in Senegal was monitored using a set of fruit-feeding insect species (Cetoniinae and Nymphalidae) that served as ecological indicators of the health of the ecosystem. Here we show that the eradication campaign had very limited impacts on the apparent densities of the most frequent species as well as three diversity indexes during the reduction phase involving insecticides but reverted to pre-intervention levels as soon as the release of the sterile male insects started. These results greatly expand our understanding of the impact of vector eradication campaigns on non-target species.

International audience; Hightlights:• Predictions of physiological process depends on climate model, species and region.• Predictions were improved after correction for the three models considered.• Processes simulated exhibited large variability at the plot scale.• This variability faded out at larger scales, owing to an aggregation effect.• Process predictions were more variable during the driest years.Abstract: Climate change affects various aspects of ecosystem functioning, especially photosynthesis, respiration and carbon storage. We need accurate modelling approaches (impact models) to simulate forest functioning and vitality in a warmer world so that forest models can estimate multiple changes in ecosystem service provisions (e. g., productivity and carbon storage) and test management strategies to promote forest resilience.Here, we aimed to quantify the bias in these models, addressing three questions: (1) Do the predictions of impact models vary when forcing them with different climate models, and how do the predictions differ under climate model vs. observational climate forcings? (2) Does the climate impact simulation variability caused by climate forcings fade out at large spatial scales? (3) How does using simulated climate data affect process-based model predictions in stressful drought events? To answer these questions, we present historical results for 1960-2010 from the CASTANEA ecophysiological forest model and use the data from three climate models. Our analysis focuses on monospecific stands of European beech (Fagus sylvatica), temperate deciduous oaks (Quercus robur and Q. petraea), Scots pine (Pinus sylvestris) and spruce (Picea abies) in French forests.We show that prediction of photosynthesis, respiration and wood growth highly depends on the climate model used and species and region considered. Predictions were improved after a monthly mean bias or monthly quantile mapping correction for the three models considered. The processes simulated by the impact model exhibited large variability under different climate forcings at the plot scale (i.e., a few hectares). This variability faded out at larger scales (i.e., an ecological region, 100 km(2)), owing to an aggregation effect. Moreover, process predictions obtained under different climate forcings were more variable during the driest years. These results highlight the necessity of quantifying the bias correction effect on process predictions before predicting flux dynamics with a process-based model.

In 1954, brown trout were introduced to the Kerguelen archipelago (49°S, 70°E), a pristine, sub-Antarctic environment previously devoid of native freshwater fishes. Trout began spreading rapidly via coastal waters to colonize adjacent watersheds, however, recent and unexpectedly the spread has slowed. To better understand the ecology of the brown trout here, and why their expansion has slowed, we documented the marine habitat use, foraging ecology, and environmental conditions experienced over one year by 50 acoustically tagged individuals at the colonization front. Trout mainly utilized the marine habitat proximate to their tagging site, ranging no further than 7 km and not entering any uncolonized watersheds. Nutritional indicators showed that trout were in good condition at the time of tagging. Stomach contents and isotope signatures in muscle of additional trout revealed a diet of amphipods (68%), fish (23%), isopods (6%), and zooplankton (6%). The small migration distances observed, presence of suitable habitat, and rich local foraging opportunities suggest that trout can achieve their resource needs close to their home rivers. This may explain why the expansion of brown trout at Kerguelen has slowed.

International audience; Quantitative pollen-based reconstruction of Holocene plant abundance has not been attempted in the tropics so far. Tropical vegetation is characterized by a large number of entomophilous species and pollen-vegetation modelling for such plants is widely considered too problematic. However, there is a pressing need for quantitative reconstructions of Holocene plant cover in tropical regions to better assess climate- and human-induced environmental crises over time. Of particular note is the environmental crisis at the end of the ‘African Humid Period’ (c. 3 thousand years before present [ka BP]) which remains unquantified. Here, we present results from a pilot study in the Cameroon highlands including estimates of relative pollen productivity (RPP) for major taxa of the Afromontane forests and grasslands using the Extended R-Value (ERV) model, and the first reconstructions of past regional and local Holocene plant cover using the Landscape Reconstruction Algorithm (LRA). RPP estimates were obtained for 12 taxa. We found that Celtis, Alchornea, Syzygium, Macaranga/Mallotus, Nuxia type, and Schefflera have RPPs larger than Poaceae, and Moraceae, Combretaceae/Melastomataceae, Prunus africana/Rubus pinnatus, Cyperaceae, and Podocarpus lower RPPs than Poaceae. The LRA was applied to three Holocene pollen records from Cameroon (Bambili, Mbi, Mbalang) and one from Nigeria (Tilla). The results confirm the abruptness of the forest collapse in Cameroon at 3 ka BP, and suggest that it was faster and of larger magnitude than earlier anticipated. The LRA reconstruction also indicates that the regional landscape in the mountain region was more open than uncorrected pollen percentages alone suggest. Moreover, it supports the earlier interpretation of a dense forest at Bambili 11–3.5 ka BP and the local occurrence of Afromontane forest taxa at Mbalang in the Mid-Holocene.

Tropical Andean glaciers are retreating rapidly, with possible consequences for trophic structure and ecosystem processes in high Andean meltwater streams. Here, we measured the environmental characteristics, quantified pools of particulate organic matter (POM) and periphyton (Chl. a), sampled benthic macroinvertebrates, determined functional feeding groups (FFG), and performed mesh bag decomposition experiments with Calamagrostis grass detritus at 17 stream sites along a gradient of glacial influence (GI) with 0–23% glacier cover in the catchment at 4050–4200 m a.s.l. in the Andes of Ecuador. POM was unrelated to GI while Chl. a. showed a weak (non-significant) negative relationship to GI. The macrofauna abundance decreased while taxon richness and the number of FFGs per site showed a hump-shaped relationship with increasing GI. Taxa with an opportunistic and generalist feeding mode generally dominated benthic assemblages and were related to high GI levels and low Chl. a. Only shredders were negatively related to GI, but unrelated to POM. Decomposition rates were comparable to those found in temperate alpine streams, and for both fine (0.0010–0.0065; median 0.0028 d−1) and coarse (0.0019–0.0088; median 0.0048 d−1) mesh bags, peaked at intermediate GI values, while the difference between bag types was small and almost constant along the GI gradient. This indicates an overall minor effect of macroinvertebrate shredders compared to that of microbes, in particular at high GI. It also suggests that the relatively high average temperature of these high-altitude equatorial streams (7–10 °C) does not produce higher decomposition rates than those in comparable but colder streams at temperate latitudes. The results suggest that, at the lower end of glacier cover, tropical glacier loss will not change the dominant microbial role in detritus decomposition, but that part of the physical abrasion could be partially replaced by biological shredding.

The species of Eleotris from Indonesia are reviewed and compared to the known species described from the area. Nine species are recognized including three new species in the ‘melanosoma’ neuromast pattern group. These are described using genetic and morpho-meristic approaches. The new species differ by a high percentage of genetic divergence in partial COI gene (652 bp) and by several characters including the number of pectoral fin rays, the number of scales in lateral, predorsal, forward and zigzag series. The main characteristics of the other known species in the area in the ‘melanosoma’ group, Eleotris melanosoma Bleeker, 1853 and Eleotris macrolepis (Bleeker, 1875), both belonging to this group, are given for comparison. A key for Eleotris species from Indonesia is provided.

ISFFS.International Seminar on Fish and Fisheries Sciences, Bogor ; Bali [en ligne], IDN, -; Recently, a global increase in temperature has been considered with a temperature rise. Therefore, new species and diseases are getting domestic in Europe. Particularly, tilapia is kept in "colder" areas like in European waters in indoor facilities. It was examined if the tilapia lake virus (TiLV) can infect native European fish. Common carp, crucian carp, and rainbow trout were chosen to be with infected tilapia. While tilapia were infected, the other species were always cohabitated. After keeping all species together, samples were collected. Tilapia and crucian carp at 20 °C as well as rainbow trout at 12°C, showed mortality. Besides necrosis, infiltrations and syncytia were observed. TiLV was detected by in-situ hybridization in all species. Sera were used for SNT to prove the replication. While tilapia developed neutralizing antibodies after 14 to 21 dpi, carp and rainbow trout started after 12 dpi. The highest neutralizing activities we found in sera from crucian carp. All fish (tilapia, crucian carp, and rainbow trout) that died during the experiment were inspected for the presence of TiLV by RT-qPCR, histology, and ISH. Due to the experience that clinically infected fish showing severe symptoms are not producing antibodies, serology was not carried out.

International audience; Herbicides are well known for unintended effects on freshwater periphyton communities. Large knowledge gaps, however, exist regarding indirect herbicide impacts on primary consumers through changes in the quality of periphyton as a food source (i.e., diet-related effects). To address this gap, the grazer Physella acuta (Gastropoda) was fed for 21 days with periphyton that grew for 15 days in the presence or absence of the herbicide diuron (8 mu g/L) to quantify changes in the feeding rate, growth rate, and energy storage (neutral lipid fatty acids; NLFAs) of P. acuta. Periphyton biomass, cell viability, community structure, and FAs served as proxies for food quality that support a mechanistic interpretation of the grazers' responses. Diuron changed the algae periphyton community and fatty acid profiles, indicating alterations in the food quality, which could explain differences in the snails' feeding rate compared to the control. While the snails' growth rate was, despite an effect size of 55%, not statistically significantly changed, NLFA profiles of P. acuta were altered. These results indicate that herbicides can change the food quality of periphyton by shifts in the algae composition, which may affect the physiology of grazers.

Intertidal seagrass meadows are exposed to both marine and terrestrial environmental constraints. Seagrass vulnerability to climate changes in these highly dynamic and thermally stressful environments is concerning. Using broad scale monitoring data covering contrasted intertidal environments, this study aims to provide a comprehensive view of the extent, drivers and potential limits of Zostera marina phenotypic responses. The links between phenotypic and reproductive strategies are also explored. Across 500km of coastline, Z. marina exhibited extensive variations of density, morphology, above- and belowground biomass, and rates of clonality. Variance partitioning of phenotypic traits confirmed the strong link between intertidal seagrass populations and broad-scale climate variability. However, it also highlighted a non-negligeable role of local factors such as exposure regime, substrate and tidal cycles. In its response to the environment, Z. marina displayed a trade-off between the density and size of shoots, leading to two distinct phenotypic types: high densities and low above-to-belowground biomass ratios (Type 1) in response to both high hydrodynamic and temperature stress; and low densities, high aboveground biomass per shoot and developed leaves and sheaths (Type 2) in the most stable and less stressful intertidal environments. We argue that Type 1 maximizes self-facilitation whereas Type 2 minimizes intra-specific competition, and that their occurrence matches predictions from the stress-gradient hypothesis (SGH). Building on the SGH, we propose a generalized response of seagrass to environmental changes and discuss the role of light as a potential limiting resource for intertidal meadows. Synthesis – Here, we show how the SGH can explain seagrass phenotypic responses, drawing on previous experimental results to provide relevant predictions across different stress gradients. We also show that Zostera marina responds to strong hydrodynamics and thermal constraints, both likely to increase in the intertidal with climate changes, with a facilitation-maximizing phenotypic type (Type 1). This strategy appears incompatible with the competition-minimizing Type 2 found when seagrass face resource limitation, such as light limitation induced by water quality degradation. This potential limit to the resilience of intertidal seagrass populations in the face of cumulative stressors raises concern about their vulnerability regarding future climate scenarios.

Large marine predators exhibit high concentrations of mercury (Hg) as neurotoxic methylmercury, and the potential impacts of global change on Hg contamination in these species remain highly debated. Current contaminant model predictions do not account for intraspecific variability in Hg exposure and may fail to reflect the diversity of future Hg levels among conspecific populations or individuals, especially for top predators displaying a wide range of ecological traits. Here, we used Hg isotopic compositions to show that Hg exposure sources varied significantly between and within three populations of white sharks (Carcharodon carcharias) with contrasting ecology: the north-eastern Pacific, eastern Australasian, and south-western Australasian populations. Through Δ200Hg signatures in shark tissues, we found that atmospheric Hg deposition pathways to the marine environment differed between coastal and offshore habitats. Discrepancies in δ202Hg and Δ199Hg signatures among white sharks provided evidence for intraspecific exposure to distinct sources of marine methylmercury, attributed to population and ontogenetic shifts in foraging habitat and prey composition. We finally observed a strong divergence in Hg accumulation rates between populations, leading to three times higher Hg concentrations in large Australasian sharks compared to north-eastern Pacific sharks, and likely due to different trophic strategies adopted by adult sharks across populations. This study illustrates the variety of Hg exposure sources and bioaccumulation patterns that can be found within a single species and suggests that intraspecific variability needs to be considered when assessing future trajectories of Hg levels in marine predators.

Although eutrophication induced by anthropogenic nutrient enrichment is a driver of shifts in community composition and eventually a threat to marine biodiversity, the causes and consequences on ecosystem functioning remain greatly unknown. In this study, by applying a trait-based approach and measuring niche breadth of diatoms and copepods, the drivers and underlying mechanisms of the seasonal species succession of these ecological communities in a coastal system dominated in spring by Phaeocystis blooms were explored. It is suggested that the seasonal succession of diatoms and copepods is the result of several trade-offs among functional traits that are controlled by the seasonal abiotic and biotic pressure encountered by the plankton communities. The results of this study highlight that a trade-off between competition and predator, i.e., weak competitors are better protected against predation, plays an important role in promoting plankton species richness and triggers the Phaeocystis bloom. As often observed in eutrophicated ecosystems, only the biotic homogenization of the copepod community and the shift in the diet of copepods toward Phaeocystis detrital materials have been detected during the Phaeocystis bloom. The diatom and copepod communities respond synchronously to fluctuating resources and biotic conditions by successively selecting species with specific traits. This study confirms the key role of competition and predation in controlling annual plankton succession.

The 2008-2010 data collection was financially supported by FAPEMIG-Brazil, CAPES-Brazil, the Leakey Trust and the University of St Andrews. The 2014-2016 data collection received funding from the European Research Council under the European Union’s Seventh Framework Programme (FP7/2007–2013)/ERC grant agreement no. 283871 (PI: Zuberbühler) and the University of Neuchâtel. The 2019 research was financially supported by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 788077, Orisem, PI: Schlenker), from the Fyssen Foundation (post-doc grant) and from the Global Wildlife Conservation’s Primate Action Fund and the Margot Marsh Biodiversity Foundation, and the Institut d’Etudes Cognitives, Ecole Normale Supérieure - PSL Research University supported by grants ANR-10-IDEX-0001-02 and FrontCog ANR-17-EURE-0017.JCBM thanks the Brazilian National Council for Scientific and Technological Development/CNPq for a research fellowship (PQ 1C #304475/2018-1). KZ thanks the Swiss National Science Foundation 310030_185324. Platyrrhini are highly vulnerable to the yellowfever (YF) virus. From 2016 to 2018, the Atlantic Forest of southeast Brazilfaced its worst sylvatic YF outbreak in about a century, thought to have killedthousands of primates. It is essential to assess the impact of this epidemic onthreatened primate assemblages to design effective conservation strategies. Inthis study, we assessed the impact of the 2016-2018 YF outbreak on ageographically isolated population of Near Threatened black-fronted titi monkeys(Callicebus nigrifrons) in two Atlantic Forest patches ofthe Santuário do Caraça, MG, Brazil. Extensive pre-outbreak monitoring,conducted between 2008 and 2016, revealed that the home range and group sizes ofthe population remained stable. In 2016, the population size was estimated at53-57 individuals in 11-12 groups. We conducted monitoring and playback surveysin 2019 and found that the population had decreased by 68% in one forest patchand completely vanished in the other, resulting in a combined decline of 80%. Wediscuss this severe loss of a previously stable population and conclude that itwas highly likely caused by the YF outbreak. The remaining population is atrisk of disappearing completely because of its small size and geographic isolation.A systematic population surveys of C. nigrifrons, along other sensible Platyrrhini species, is needed to re-evaluate theircurrent conservation status. Postprint

Calls for ecological principles in agriculture have gained momentum. Intercropping systems have long been designed by growing two, or more, annual crop species in the same field, aiming for a better resource use efficiency. However, assembly rules for their design are lacking. Notably, it is still unknown whether species performances are maximized during both the vegetative and reproductive phases given the sensitivity of reproductive allocation rules to resource limitation. Interestingly, ecological theory provides expectations regarding putative invariance of plant reproductive allometry (PRA) under non-limiting conditions for plant growth. Here we examined whether and how PRA changes in response to plant-plant interactions in intercropping systems, which can inform both ecological theory and the understanding of the functioning of intercropping systems.We analyzed a dataset of 28 field cereal-legume intercropping trials from various climatic and management conditions across Western Europe. PRA was quantified in both mixing and single-species situations.PRA was positively impacted in specific management conditions, leading to a greater increase in yield for a given increase in plant size. Variations in PRA were more beneficial for legumes grown in unfertilized mixture, which explains their use as a key component in actual intercrop systems. The response for cereals was similar but less pronounced in magnitude, and was greater under limiting resource conditions. Focusing on intercropping conditions, hierarchical competition (indicated by biomass difference between intercropped species) appears as a strong driver of the reproductive output of a given species.Synthesis and applications. Plant reproductive allometry behaves in crop species in the same way as it does in wild species. However, contrary to theoretical expectations about an overall invariance of PRA, we highlighted taxon-specific and context-dependent effects of plant-plant interactions on PRA. This systematic deviation to PRA expectations could be leveraged to cultivate each species up to its reproductive optimum while accounting for the performance of the other, whether farmer’s objective is to favor one species or to reach an equilibrium in seed production. Sowing density and cultivar choice could regulate the biomass of each component, with specific targets derived from allometric relationships, aiming for an optimal reproductive allocation in mixtures.

Volatile organic compounds (VOCs) emitted by plants consist of a broad range of gasses which serve purposes such as protecting against herbivores, communicating with insects and neighboring plants, or increasing the tolerance to environmental stresses. Evidence is accumulating that the composition of VOC blends plays an important role in fulfilling these purposes. Constitutional emissions give insight into species-specific stress tolerance potentials and are an important first step in linking metabolism and function of co-occurring VOCs. Here, we investigate the blend composition and interrelations among co-emitted VOCs in unstressed seedlings of four broad-leaved tree species, Quercus robur, Fagus sylvatica, Betula pendula, and Carpinus betulus. VOCs of Q. robur and F. sylvatica mainly emitted isoprene and monoterpenes, respectively. B. pendula had relatively high sesquiterpene emission; however, it made up only 1.7% of its total emissions while the VOC spectrum was dominated by methanol (∼72%). C. betulus was emitting methanol and monoterpenes in similar amounts compared to other species, casting doubt on its frequent classification as a close-to-zero VOC emitter. Beside these major VOCs, a total of 22 VOCs could be identified, with emission rates and blend compositions varying drastically between species. A principal component analysis among species revealed co-release of multiple compounds. In particular, new links between pathways and catabolites were indicated, e.g., correlated emission rates of methanol, sesquiterpenes (mevalonate pathway), and green leaf volatiles (hexanal, hexenyl acetate, and hexenal; lipoxygenase pathway). Furthermore, acetone emissions correlated with eugenol from the Shikimate pathway, a relationship that has not been described before. Our results thus indicate that certain VOC emissions are highly interrelated, pointing toward the importance to improve our understanding of VOC blends rather than targeting dominant VOCs only.

An increasing number of studies have found that the implementation of feeding sites for wildlife-related tourism can affect animal health, behaviour and reproduction. Feeding sites can favour high densities, home range overlap, greater sedentary behaviour and increased interspecific contacts, all of which might promote parasite transmission. In the Yunnan snub-nosed monkey (Rhinopithecus bieti), human interventions via provisioning monkeys at specific feeding sites have led to the sub-structuring of a group into genetically differentiated sub-groups. The fed subgroup is located near human hamlets and interacts with domesticated animals. Using high-throughput sequencing, we investigated Entamoeba species diversity in a local host assemblage strongly influenced by provisioning for wildlife-related tourism. We identified 13 Entamoeba species or lineages in faeces of Yunnan snub-nosed monkeys, humans and domesticated animals (including pigs, cattle, and domestic chicken). In Yunnan snub-nosed monkeys, Entamoeba prevalence and OTU richness were higher in the fed than in the wild subgroup. Entamoeba polecki was found in monkeys, pigs and humans, suggesting that this parasite might circulates between the wild and domestic components of this local social–ecological system. The highest proportion of faeces positive for Entamoeba in monkeys geographically coincided with the presence of livestock and humans. These elements suggest that feeding sites might indirectly play a role on parasite transmission in the Yunnan snub-nosed monkey. The implementation of such sites should carefully consider the risk of creating hotspots of disease transmission, which should be prevented by maintaining a buffer zone between monkeys and livestock/humans. Regular screenings for pathogens in fed subgroup are necessary to monitor transmission risk in order to balance the economic development of human communities dependent on wildlife-related tourism, and the conservation of the endangered Yunnan snub-nosed monkey.

Mesotrione is among the most recently marketed herbicides belonging to the triketone family and applied on maize crops. A Bacillus megaterium Mes11 strain isolated from an agricultural soil was able to completely transform 1 mM of mesotrione, alone or in a mixture with 1 mM of nicosulfuron and/or S-metolachlor herbicides, in 5 h. Its complete genome contains one circular chromosome (5,191,612 bp) and nine plasmids (from 45,372 to 169,684 bp). Genome analysis revealed that 10 genes encoded oxygen-insensitive nitroreductases of which only one (NfrA2) was shown to be involved in the first step of mesotrione transformation « in cellulo ». Indeed, quantitative reverse-transcription PCR analysis demonstrated that the NfrA2 expression was concomitant with mesotrione transformation, showing a maximum 6-fold increase after a 4 h exposure to this single molecule. As opposed to nicosulfuron, the presence of S-metolachlor led to a significant 12 to 24-fold increase of NfrA2 expression after the same time of exposure, in the binary and ternary mixtures, respectively. These results highlight, for the first time, the physiological role of NfrA2 in mesotrione transformation « in cellulo » and the environmental role of B. megaterium Mes11 for bioremediation of mesotrione-contaminated ecosystems.

International audience; Stinging nettle (Urtica dioica L.) raises growing interest in phytomanagement because it commonly grows under poplar Short Rotation Coppices (SRC) set up at trace-metal (TM) contaminated sites and provides high-quality herbaceous fibres. The mycobiome of this non-mycorhizal plant and its capacity to adapt to TM-contaminated environments remains unknown. This study aimed at characterizing the mycobiome associated with nettle and poplar roots co-occurring at a TM-contaminated site. Plant root barcoding using the fungi-specific ITS1F-ITS2 primers and Illumina MiSeq technology revealed that nettle and poplar had distinct root fungal communities. The nettle mycobiome was dominated by Pezizomycetes from known endophytic taxa and from the supposedly saprotrophic genus Kotlabaea (which was the most abundant). Several ectomycorrhizal fungi such as Inocybe (Agaricomycetes) and Tuber (Pezizomycetes) species were associated with the poplar roots. Most of the Pezizomycetes taxa were present in the highly TM-contaminated area whereas Agaricomycetes tended to be reduced. Despite being a known non-mycorrhizal plant, nettle was associated with a significant proportion of ectomycorrhizal OTU (9.7%), suggesting some connexions between the poplar and the nettle root mycobiomes. Finally, our study raised the interest in reconsidering the fungal networking beyond known mycorrhizal interactions.

The white-crowned Pigeon (WCPi), Patagioenas leucocephala, and the scaly-naped Pigeon (SNPi), P squamosa, are two Caribbean endemic species of patrimonial and cynegetic interest. Although both species are under the threat of habitat destruction and hunting pressure, population trends remain undocumented in a large part of their geographical range. Here, we used both the “auditory and visual” and “call-broadcast” census methods to assess the occurrence and relative abundance of both species in Guadeloupe (French West Indies). The call-broadcast method was found to be more efficient as it reduced the problem of “false absence” while increasing the probability of detection. Results from our surveys showed that both WCPis and SNPis were at low density and showed complete habitat segregation. SNPis were only encountered in rainforest, whereas WCPis could be observed at count stations located in dry and swamp forests, mangroves, agricultural lands and wet meadows. We recommend the use of the call-broadcast method for monitoring the two species on islands where they occur at low density, under which conditions distance sampling may be poorly reliable. The general relevance of the call-broadcast method to other species of pigeons and doves deserves further attention, especially to document population trends in elusive game species of conservation interest.

AimHere, we aim to: (i) investigate the local effect of environmental and human-related factors on alien plant invasion in sub-Antarctic islands; (ii) explore the relationship between alien species features and their dependence on anthropogenic propagule pressure; and (iii) unravel key traits conferring invasiveness in the sub-Antarctic.LocationPossession Island, Crozet archipelago (French sub-Antarctic islands).TaxonNon-native vascular plants (Poaceae, Caryophyllaceae, Juncaceae).MethodsSingle-species distribution models were used to explore the effect of high-resolution topoclimatic and human-related variables on the occurrence of six of the most aggressive alien plants colonizing French sub-Antarctic islands. Furthermore, the interaction between alien species traits and their response to anthropogenic propagule pressure was analysed by means of a multi-species distribution model. This allowed identifying the features of species that were associated to low dependence on human-assisted introductions, and were thus potentially more invasive.ResultsWe observed two main invasion patterns: low-spread species strongly dependent on anthropogenic propagule pressure and high-spread species limited mainly by harsh climatic conditions. Differences in invasiveness across species mostly related to their residence time, life history and plant height, with older introductions, perennial and low-stature species being more invasive.Main conclusionsThe availability of high-resolution data improved our understanding of the role of environmental and human-related factors in driving alien species distribution on sub-Antarctic islands. At the same time, the identification of alien species features conferring invasiveness may help anticipating future problematic invasions.

Forests on steep slopes constitute a significant proportion of European mountain areas and are important as production and protection forests. This study describes the soil fungal community structure in a European beech-dominated mountain forest stands in the Northern Calcareous Alps and investigates how it is determined by season and soil properties. Samples were collected at high spatial resolution in an area of ca. 100 m × 700 m in May (spring) and August (summer). Illumina MiSeq high-throughput sequencing of the ITS2-region revealed distinct patterns for the soil fungal communities. In contrast to other studies from temperate European beech forest stands, Ascomycota dominated the highly diverse fungal community, while ectomycorrhizal fungi were of lower abundance. Russulaceae, which are often among the dominant ectomycorrhizal fungi associated with European beech, were absent from all samples. Potentially plant pathogenic fungi were more prevalent than previously reported. Only subtle seasonal differences were found between fungal communities in spring and summer. Especially, dominant saprotrophic taxa were largely unaffected by season, while slightly stronger effects were observed for ectomycorrhizal fungi. Soil characteristics like pH and organic carbon content, on the other hand, strongly shaped abundant taxa among the saprotrophic fungal community. Supplementary Information The online version contains supplementary material available at 10.1007/s00248-021-01736-5.

International audience; The social ants, bees, wasps, and termites include some of the most ecologically-successful groups of animal species. Their dominance in most terrestrial environments is attributed to their social lifestyle, which enable their colonies to exploit environmental resources with remarkable efficiency. One key attribute of social insect colonies is the division of labour that emerges among the sterile workers, which represent the majority of colony members. Studies of the mechanisms that drive division of labour systems across diverse social species have provided fundamental insights into the developmental, physiological, molecular, and genomic processes that regulate sociality, and the possible genetic routes that may have led to its evolution from a solitary ancestor. Here we specifically discuss the conserved role of the foraging gene, which encodes a cGMP-dependent protein kinase (PKG). Originally identified as a behaviourally polymorphic gene that drives alternative foraging strategies in the fruit fly Drosophila melanogaster, changes in foraging expression and kinase activity were later shown to play a key role in the division of labour in diverse social insect species as well. In particular, foraging appears to regulate worker transitions between behavioural tasks and specific behavioural traits associated with morphological castes. Although the specific neuroethological role of foraging in the insect brain remains mostly unknown, studies in genetically tractable insect species indicate that PKG signalling plays a conserved role in the neuronal plasticity of sensory, cognitive and motor functions, which underlie behaviours relevant to division of labour, including appetitive learning, aggression, stress response, phototaxis, and the response to pheromones.

In the absence of top-down and bottom-up controls, herbivores eventually drive themselves to extinction by exhausting their host plants, Poorly mobile herbivores may experiment only local disappearance, because they can recolonize intact plant patches elsewhere, leaving time to previously over-exploited patches to regrow. However most herbivores such as winged insects are highly mobile, which may prevent the formation of spatial heterogeneity. We test if long-distance dispersal can preclude coexistence using the invasion of box tree moth (Cydalima perspectalis) in Europe as a model system. We build a lattice model and estimate the parameters with a combination of field measurements, experimental data and literature sources. Space corresponds either to a realistic boxwood landscape in the Alps, or to theoretical landscapes of various sizes. We find that both species persist under a large range of realistic parameter values, despite a severe reduction in boxwood biomass, with an alternation of outbreaks and near-to-extinction moth densities. Large landscapes are necessary for coexistence, allowing the formation of spatial structure. Low plant regrowth combined with long-distance dispersal could drive moths to extinction, because of resources depletion at the global scale even without a complete synchronization of the local dynamics. The spatial dynamics leads to formation of small plant patches evenly distributed in the landscape, because of a combination of local plant dispersal and global indirect competition between plants through their positive effect on moth population size. Coexistence is favored by such heterogeneous landscapes, because empty patches increase moth mortality during dispersal: the system thus creates its own stability conditions.; En l'absence de contrôles top-down et bottom-up, les herbivores finissent par épuiser leurs plantes hôtes, ce qui les conduit à l'extinction. Les herbivores peu mobiles peuvent néanmoins s'éteindre seulement localement ; puis recoloniser des parcelles de plantes intactes ailleurs, laissant le temps à des parcelles précédemment surexploitées de repousser. Cependant, la plupart des herbivores tels que les insectes ailés sont très mobiles, ce qui peut empêcher la formation d'une hétérogénéité spatiale. Nous testons si la dispersion à longue distance peut empêcher la coexistence en utilisant l'invasion de la pyrale du buis (Cydalima perspectalis) en Europe comme système d'étude. Nous construisons un modèle en grille et estimons les paramètres en combinant des mesures de terrain, des données expérimentales et des sources bibliographiques. L'espace correspond soit à un paysage réaliste de buis dans les Alpes, soit à des paysages théoriques de différentes tailles. Nous constatons que les deux espèces persistent dans une large gamme de valeurs réalistes des paramètres, malgré une forte réduction de la biomasse de buis, avec une alternance entre des pics d'invasion et des densités en pyrales proche de l'extinction. De grands paysages sont nécessaires à la coexistence, permettant la formation d'une structure spatiale. Une faible repousse des plantes combinée à une dispersion sur de longues distances pourrait conduire les papillons de nuit à l'extinction, en raison de l'épuisement des ressources à l'échelle globale, même sans une synchronisation complète des dynamiques locales. La dynamique spatiale conduit à la formation de petites parcelles de plantes uniformément réparties dans le paysage, en raison d'une combinaison de la dispersion locale des plantes et de la concurrence indirecte globale entre les plantes par leur effet positif sur la taille des populations de pyrales. La coexistence est favorisée par ces paysages hétérogènes, car les parcelles vides augmentent la mortalité des pyrales lors de la dispersion : le système crée ainsi ses propres conditions de stabilité.

Plant viruses can change hosts in ways that increase vector contacts, virion acquisition, and subsequent vector dispersal to susceptible hosts. Based on this, researchers have proposed that virus-induced phenotypes are the product of adaptations to “manipulate” hosts in ways that increase transmission. Theoretical models of virus spread in crops support this proposition; “manipulative” viruses spread faster and to a greater extent. However, both empirical and theoretical studies on manipulation are disproportionately focused on a few persistently transmitted pathogens and rarely consider the broader ecological implications of virus infections. To address these knowledge gaps, we documented the effects of different stages of infection by an economically devastating, semi-persistently transmitted crinivirus, Cucurbit yellow stunting disorder virus [CYSDV] on Cucumis melo (muskmelon) phenotypes, behavior and performance of whitefly vectors (Bemisia tabaci) and non-vector aphid competitors (Aphis gossypii). Whiteflies were strongly attracted to CYSDV-infected hosts in a symptomatic stage of disease, but not in an asymptomatic stage, and fed more easily on infected plants regardless of symptoms. In contrast, aphids tended to avoid infected hosts, fed for shorter periods of time, and produced fewer offspring on infected hosts. Metabolomics revealed that host manipulations by CYSDV do not rely on virus-induced shifts in leaf primary metabolites or volatiles but may involve changes to phloem architecture and other compounds not measured here. Our study demonstrates a sophisticated host manipulation by CYSDV, whereby infection discourages colonization by a non-vector competitor while inducing a suite of progressively more transmission-conducive changes that encourage virion acquisition by the vector.

As native ranges are often geographically structured, invasive species originating from a single source population only carry a fraction of the genetic diversity present in their native range. This invasion pathway is thus often associated with a drastic loss of genetic diversity resulting from a founder event. However, the fraction of diversity brought to the invasive range may vary under different invasion histories, increasing with the size of the propagule, the number of re-introduction events, and/or the total genetic diversity represented by the various source populations in a multiple-introduction scenario. In this study, we generated a SNP dataset for the invasive termite Reticulitermes flavipes from 23 native populations in the eastern United States and six introduced populations throughout the world. Using population genetic analyses and approximate Bayesian computation (ABC), we investigated its worldwide invasion history. We found a complex invasion pathway with multiple events out of the native range and bridgehead introductions from the introduced population in France. Our data suggest that extensive long-distance jump dispersal appears common in both the native and introduced ranges of this species, likely through human transportation. Overall, our results show that similar to multiple introduction events into the invasive range, admixture in the native range prior to invasion can potentially favor invasion success by increasing the genetic diversity that is later transferred to the introduced range. Extensive human-mediated jump dispersal within and across the native and introduced ranges of the invasive termiteReticulitermes flavipes

In a context of rapid climate change, the influence of large-scale and local climate on population demography is increasingly scrutinized, yet studies are usually focused on one population. Demographic parameters, including survival, can vary significantly across populations of a given species, depending on global or local climatic fluctuations but also on many other population-specific parameters such as breeding density, habitat naturalness, predation or parasitism. Such ecological differences between populations could lead to different paces-of-life (POL), whereby populations where individuals display higher reproductive investment and bolder behaviours would have lower survival probabilities. We use here long-term (19 to 38 years) monitoring datasets from four Mediterranean populations of blue tits (Cyanistes caeruleus) to investigate the effects of sex, age class, large-scale and local climate temporal variation and population breeding density, on adult survival, using Capture-Mark-Recapture modelling. Environment heterogeneity in these four populations (two in evergreen and two in deciduous forests) has been linked to strong multi-trait phenotypic variation, suggesting blue tits in deciduous forests display faster POL compared to their conspecifics in evergreen habitats. The present results show heterogeneity in average survival probabilities across the four populations, with, as predicted, lower survival in the ‘fast’ blue tits occupying deciduous habitats. Interestingly, the year-to-year variation in survival probabilities was synchronous among populations. This suggests that regional environmental conditions could drive survival fluctuations across populations. However, breeding densities were not correlated across populations, and we found no evidence that adult survival is correlated with either large-scale or local, climate temporal variation in these four blue tit populations. Finally, two of the focal populations displayed a linear temporal decrease in adult survival over the study period, calling for further investigation to explain this decline. Overall, this multi-site study shows that blue tit parental survival from one spring to the next can vary substantially across years, in a synchronous way across populations, yet the climate indices we used are not correlated with the temporal variation. This calls for further investigations in other potential drivers such as resource (in particular insect) abundance, predation or parasitism.

Sharks embody several major aspects of modern marine management: they are traditionally antagonized, exploited or by‐caught by humans, typically vulnerable to extirpation, pursued as luxury food, yet valued as wildlife and essential as top‐down regulators in marine food webs. Due to their generally large size, elusiveness, high mobility, and potentially dangerous nature, elasmobranchs pose substantial technical challenges to biodiversity monitoring, which prompted recent efforts to harness the power of environmental DNA (eDNA) as a noninvasive survey method for these taxa. Here we deployed an elasmobranch‐specific metabarcoding assay to characterize shark and ray diversity around Reunion Island, during the austral summer, detecting at least 14 species and a strong overall correlation between frequency of species detection and read abundance. Over 90% of sequence reads belonged to three large predators: scalloped hammerhead (Sphyrna lewini), tiger shark (Galeocerdo cuvier) and bull shark (Carcharhinus leucas). While the importance of tiger and bull sharks is well established in Reunion Island, and a major focus of the local shark control program, the prevalence and abundance of scalloped hammerhead has so far been grossly neglected. We also confirm the absence of typical “tropical reef sharks” around the island and reveal an important temporal fluctuation in tiger shark during the study period. Collectively, results show how eDNA can help circumvent barriers, bias and drawbacks associated with monitoring shark populations using visual and capture‐based techniques, and generate spatial and temporal biodiversity data on these species for rapid consideration by marine environmental managers.

Increasing atmospheric nitrogen deposition and climate change are considered the main factors accelerating the long-term growth of forests. Quantification of changes in growth rate can be extremely useful in monitoring and assessing the impact of climate change on site productivity. In this study, we carried out a country-wide analysis of long-term (100 years) dynamics and changes in the height growth rate and site index (SI) of Scots pine in Poland. To ensure representativeness we used a large sample of stem analysis trees collected on 312 plots selected using stratified sampling. To control the effect of site fertility and thus avoid the over-representation of older stands on infertile sites, we measured a range of soil properties that, together with environmental indicators characterising climatic conditions and topography, were used in growth trend modelling as explanatory variables. We found that trees planted in successive years have grown faster. The SI calculated for individual trees is linearly dependent on the year of germination and with increasing age of germination, the SI at the base age of 100 years has increased by 8.4 cm per year. Despite the differences in the growth dynamics of pines planted in different germination years, tree growth follows the same growth pattern. The observed continuous changes in site productivity correspond to an increase in the SI by over 29% between 1900 and 2000. A consequence of continuous changes in site conditions and height growth rate is ambiguity in derived SI values. Under changing site conditions, SI values calculated based on stand height and age depend not only on site productivity but also the year of germination. As a consequence, stands growing under identical site conditions show different SIs, which should be acknowledged if the SI is to be used in forest management. Therefore, determining the SI of newly established stands based on the SI of older generations requires the application of an amendment to account for stand age. Continuously improving our understanding of potential climate change impacts on forest ecosystems is essential and provide information to support forest managers seeking to develop effective adaptation measures and determine sustainable forestry production. As such, our results provide valuable support when making long-term decisions and developing effective adaptation strategies in forest management.

International audience; Metal(loid) contamination of soil, resulting from the mining activities, is a major issue worldwide, due to its negative effects on the environment and health. Therefore, these contaminated soils need to be remediated. One realistic method is the assisted phytostabilization, which aims at establishing a vegetation cover on the soil that will reduce metal(loid) bioavailability and spreading through the prevention of wind erosion and water leaching. In addition, amendments are applied to improve soil conditions and ameliorate plant growth. In this goal, biochar and compost showed good results in terms of amelioration of soil fertility and reduction in lead bioavailability. However, they usually have a negative effect on arsenic. On the contrary, iron sulfate showed capacity to reduce arsenic mobility through interaction with its iron hydroxides. Finally, the choice of the appropriate plant species is crucial for the success of assisted phytostabilization. One good option is to use endemic species, adapted to the metal(loid) stress, with a fast growth and large shoot and root systems. The aims of this study were to (1) evaluate the effects of applying biochar, compost and iron sulfate, alone or combined, to a former mine soil on the soil properties and Agrostis capillaris growth, and (2) assess the difference between two Agrostis capillaris ecotypes, an endemic metallicolous ecotype and a non-metallicolous ecotype. Results of the mesocosm experiment showed that amendment application improved soil properties, i.e., reduced soil acidity, increased nutrient availability and lower metal(loid) stress, the best being the combination biochar-compost-iron sulfate. These ameliorations allowed a better plant growth. Finally, the metallicolous ecotype performed better in terms of growth than the non-metallicolous one and could thus be used in an assisted phytostabilization process on the former mine site.

In the Arctic, sea-ice plays a central role in the functioning of marine food webs and its rapid shrinking has large effects on the biota. It is thus crucial to assess the importance of sea-ice and ice-derived resources to Arctic marine species. Here, we used a multi-biomarker approach combining Highly Branched Isoprenoids (HBIs) with δ13C and δ15N to evaluate how much Arctic seabirds rely on sea-ice derived resources during the pre-laying period, and if changes in sea-ice extent and duration affect their investment in reproduction. Eggs of thick-billed murres (Uria lomvia) and northern fulmars (Fulmarus glacialis) were collected in the Canadian Arctic during four years of highly contrasting ice conditions, and analysed for HBIs, isotopic (carbon and nitrogen) and energetic composition. Murres heavily relied on ice-associated prey, and sea-ice was beneficial for this species which produced larger and more energy-dense eggs during icier years. In contrast, fulmars did not exhibit any clear association with sympagic communities and were not impacted by changes in sea ice. Murres, like other species more constrained in their response to sea-ice variations, therefore appear more sensitive to changes and may become the losers of future climate shifts in the Arctic, unlike more resilient species such as fulmars.

In recent decades, many Caribbean reefs have experienced large declines in abundance of scleractinian corals, and blooms of fleshy macroalgae have often accompanied these trends. In 2010 a new macroalgal threat emerged in Lac Bay, Bonaire, where peyssonnelid algal crusts (PAC) rapidly spread in shallow water and overgrew corals and sponges. Similar growths have been reported in Puerto Rico and the Virgin Islands, and here, we describe the spread of PAC on the shallow reefs of St. John, US Virgin Islands, ~ 760 km northeast of Bonaire. In 2015, PAC covered 0.2–20.6% of hard benthic surfaces at ≤ 7 m depth. By August 2017, at the same sites, PAC had increased to 3.2–61.0% cover, at 5 m depth at 10 other sites along 5 km of shore, it covered 1.4–61.6% of reef surfaces, and at 9 m depth at five sites, it covered 0.8–41.0% of reef surfaces. At 5 m depth in August 2017, scleractinians and octocorals were frequently contacting PAC (42–47% of colonies), and more scleractinians (74%) than octocorals (39%) were overgrown by PAC. Following surveys in August 2017, St. John was hit by two Category 5 hurricanes, yet the shore-wide mean cover of PAC at 5 m depth was only reduced from 26 to 23%. Our results suggest PAC is poised to cause significant ecological change on the reefs of St. John and potentially will promote a community shift favoring octocorals over scleractinians. PAC constitutes an emerging regional threat on shallow Caribbean reefs to which researchers and resource managers will need to quickly respond.

Consistent individual differences in behaviour, also called behavioural types, are often observed in animal populations and can correlate to form behavioural syndromes. Behavioural types and syndromes have consequences in various fields of ecology, from species interactions to ecosystem services, notably through the role they can play in the slow–fast life history continuum. Individuals differ in their life history strategies along this continuum according to their relative investment in reproduction or survival, and the pace-of-life syndrome (POLS) hypothesis predicts a coevolution between these life history strategies and behavioural types linked to risk taking. In this framework, the aim of our study was thus to investigate the existence of behavioural types and their links with life history traits in the parasitoid hymenopteran Venturia canescens . We considered two behaviours, exploration and activity, that are linked to risk taking and resource acquisition, and three life history traits, longevity, egg load and offspring production rate. We found consistent individual differences in both exploration and activity. However, contrary to the predictions of the POLS, the behavioural types did not correlate with each other or with the life history traits tested. We thus found no evidence of a POLS in V. canescens . However, the existence of behavioural types in female parasitoids may be of utmost importance for biological control efficiency.

International audience; Eleotris species (Teleostei: Eleotridae) are one of the most common fish in Indo‐Pacific estuaries and insular freshwater streams. In these rivers, they are a sit‐andwaitpredator. They have an amphidromous life cycle, that is adults grow, feed andreproduce in rivers, while larvae have a marine dispersal phase. Larvae recruit backto rivers and settle in stream habitats. Primary characters used to determine Eleotrisspecies are the presence and the disposition of cephalic sensory papillae rows on theoperculum and under the eyes as well as scale row numbers. The morphology ofthese cephalic sensory papillae is of particular importance in this predatory genusas it is generally correlated in fish to predation and feeding. In this paper, we haveestablished a molecular phylogeny of the genus based on the 12 mitochondrial protein‐coding genes to discuss the relationship between Indo‐Pacific Eleotris species.There is a well‐supported dichotomy in the molecular phylogeny, and this separationinto two main clades is also morphologically visible, as it reveals a difference in thearrangement of cephalic sensory papillae. Indeed, the phylogeny distinguishes thespecies with the “open” pattern of the operculum sensory papillae and the specieswith the “closed” one. This phylogeny thus reflects the morphology of the opercularpapillae. The evolution of this character is discussed in terms of the adaptation of theEleotris genus to life in tropical insular river systems.

Background: Anurans largely rely on acoustic communication for sexual selection and reproduction. While multiple studies have focused on the calling activity patterns of prolonged breeding assemblages, species that concentrate their reproduction in short-time windows, explosive breeders, are still largely unknown, probably because of their ephemeral nature. In tropical regions, multiple species of explosive breeders may simultaneously aggregate leading to massive, mixed and dynamic choruses. To understand the environmental triggers, the phenology and composition of these choruses, we collected acoustic and environmental data at five ponds in French Guiana during a rainy season, assessing acoustic communities before and during explosive breeding events. Results: We detected in each pond two explosive breeding events, lasting between 24 and 70 h. The rainfall during the previous 48 h was the most important factor predicting the emergence of these events. During explosive breeding events, we identified a temporal factor that clearly distinguished pre- A nd mid-explosive communities. A common pool of explosive breeders co-occurred in most of the events, namely Chiasmocleis shudikarensis, Trachycephalus coriaceus and Ceratophrys cornuta. Nevertheless, the species composition was remarkably variable between ponds and for each pond between the first and the second events. The acoustic structure of explosive breeding communities had outlying levels of amplitude and unexpected low acoustic diversity, significantly lower than the communities preceding explosive breeding events. Conclusions: Explosive breeding communities were tightly linked with specific rainfall patterns. With climate change increasing rainfall variability in tropical regions, such communities may experience significant shifts in their timing, distribution and composition. In structurally similar habitats, located in the same region without obvious barriers, our results highlight the variation in composition across explosive breeding events. The characteristic acoustic structure of explosive breeding events stands out from the circadian acoustic environment being easily detected at long distance, probably reflecting behavioural singularities and conveying heterospecific information announcing the availability of short-lived breeding sites. Our data provides a baseline against which future changes, possibly linked to climate change, can be measured, contributing to a better understanding on the causes, patterns and consequences of these unique assemblages, This research was supported by the Labex CEBA (Centre d’Étude de la Biodiversité Amazonienne), which provided fnancial and logistic support for the data collection. JSU was supported by COLCIENCIAS (Doctoral Scholarship of the Colombian government, 2014 call #646). DLL was supported by a Global Marie S. Curie fellowship (European Commission, program H2020, EAVESTROP–661408), a postdoctoral grant Atracción de Talento Investigador (Comunidad de Madrid, CAM, Spain, 2016-T2/AMB-1722), and acknowledges funding provided by the Ministerio de Economía, Industria y Competitividad (CGL2017-88764-R, MINECO/AEI/FEDER, Spain). None of the funders had any role in the design, analysis, interpretation of results or writing the manuscript

International audience; With the increasing impact of the global warming, occurrences of cyanobacterial blooms in aquatic ecosystems are becoming a main worldwide ecological concern. Due to their capacity to produce potential toxic metabolites, interactions between the cyanobacteria, their cyanotoxins and the surrounding freshwater organisms have been investigated during the last past years. Non-targeted metabolomic analyses have the powerful capacity to study simultaneously a high number of metabolites and thus to investigate in depth the molecular signatures between various organisms encountering different environmental scenario, and potentially facing cyanobacterial blooms. In this way, the liver metabolomes of two fish species (Perca fluviatilis and Lepomis gibbosus) colonizing various peri-urban lakes of theÎle-de-France region displaying high biomass of cyanobacteria, or not, were investigated. The fish metabolome hydrophilic fraction was analyzed by 1 H NMR analysis coupled with Batman peak treatment for the quantification and the annotation attempt of the metabolites. The results suggest that similar metabolome profiles occur in both fish species, for individuals collected from cyanobacterial blooming lakes compared to organism from non-cyanobacterial dominant environments. Overall, such environmental metabolomic pilot study provides new research perspectives in ecology and ecotoxicology fields, and may notably provide new information concerning the cyanobacteria/fish eco-toxicological interactions.

International audience; 1. A pressing question in community ecology is how multiple closely related species are able to coexist. When these species occupy the same guild, competition for limited resources is expected to lead to niche partitioning. Understanding the ways in which ecologically similar species can coexist together requires a close examination of fine-scale ecological differences among the species.2. We tested for the possibility of ecological niche partitioning in a community of Hawaiian Tetrag- natha spiders, which are members of an adaptive radiation across the Hawaiian islands. Using nine sympatric Tetragnatha species belonging to two different clades - one web building and the other actively hunting - we tested the hypothesis that trophic niches would differ significantly both 1) among species within a clade, indicating food resource partitioning, and 2) between the two clades, corresponding with their differences in foraging strategy.3. To assess trophic niches of the spider species, we measured a) web architecture (the structure of the hunting tool), b) site choice (the physical placement of the web in the habitat), c) stable isotope signatures of carbon and nitrogen in the spiders’ tissues, and d) gut content of spiders based on metagenomic data. Web architecture and isotopic data were used to generate niche hypervolumes for each species, and pairwise hypervolume overlaps were measured for each pair of species. We then tested for correlations between hypervolume overlap of web architecture and stable isotopes, and gut content beta diversity.4. We found significant differences in web architecture, site choice, stable isotope signatures, and taxonomic composition of gut contents among the nine species. In addition, we found a trend toward correlation between 1) web hypervolume overlaps and isotopic hypervolume overlaps; 2) web hypervolume overlaps and gut content beta diversity; and 3) isotopic hypervolume overlaps and gut content beta diversity.5. Our results indicate significant differences in trophic niche among these spiders. Given that these spiders are members of an adaptive radiation, our findings raise the intriguing question of what role trophic niche differentiation may have played in the diversification of this lineage.