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Background In parasitism arm race processes and red queen dynamics between host and parasites reciprocally mold many aspects of their genetics and evolution. We performed a parallel assessment of population genetics and demography of two species of pinworms with different degrees of host specificity (Trypanoxyuris multilabiatus, species-specific; and T. minutus, genus-specific) and their host, the mantled howler monkey (Alouatta palliata), based on mitochondrial DNA sequences and microsatellite loci (these only for the host). Given that pinworms and primates have a close co-evolutionary history, covariation in several genetic aspects of their populations is expected. Results Mitochondrial DNA revealed two genetic clusters (West and East) in both pinworm species and howler monkeys, although population structure and genetic differentiation were stronger in the host, while genetic diversity was higher in pinworms than howler populations. Co-divergence tests showed no congruence between host and parasite phylogenies; nonetheless, a significant correlation was found between both pinworms and A. palliata genetic pairwise distances suggesting that the parasites’ gene flow is mediated by the host dispersal. Moreover, the parasite most infective and the host most susceptible haplotypes were also the most frequent, whereas the less divergent haplotypes tended to be either more infective (for pinworms) or more susceptible (for howlers). Finally, a positive correlation was found between pairwise p-distance of host haplotypes and that of their associated pinworm haplotypes. Conclusion The genetic configuration of pinworm populations appears to be molded by their own demography and life history traits in conjunction with the biology and evolutionary history of their hosts, including host genetic variation, social interactions, dispersal and biogeography. Similarity in patterns of genetic structure, differentiation and diversity is higher between howler monkeys and T. multilabiatus in comparison with T. minutus, highlighting the role of host-specificity in coevolving processes. Trypanoxyuris minutus exhibits genetic specificity towards the most frequent host haplotype as well as geographic specificity. Results suggest signals of potential local adaptation in pinworms and further support the notion of correlated evolution between pinworms and their primate hosts.

Species interactions are a key aspect of evolutionary biology. Parasites, specifically, are drivers of the evolution of species communities and impact biosecurity and public health. However, when using interaction networks for evolutionary studies, interdependencies between distantly related species in these networks are shaped by ancient and complex processes. We propose using recent interacting host–parasite radiations, e.g. African cichlid fishes and cichlid gill parasites belonging to Cichlidogyrus (Dactylogyridae, Monogenea), as macroevolutionary model of species interactions. The cichlid–Cichlidogyrus network encompasses 138 parasite species and 416 interactions identified through morphological characteristics and genetic markers in 160 publications. We discuss the steps required to develop this model system based on data resolution, sampling bias, and reporting quality. In addition, we propose the following steps to guide efforts for a macroevolutionary model system for species interactions: first, evaluating and expanding model system outcome measures to increase data resolution; second, closing knowledge gaps to address underreporting and sampling bias arising from limited human and financial resources. Identifying phylogenetic and geographic targets, creating systematic overviews, enhancing scientific collaborations, and avoiding data loss through awareness of predatory journal publications can accelerate this process; and third, standardising data reporting to increase reporting quality and to facilitate data accessibility.

Ectomycorrhizal fungi establish a mutualistic symbiosis in roots of most woody plants. The molecular underpinning of ectomycorrhizal development was only explored in a few lineages. Here, we characterized the symbiotic transcriptomes of several milkcap species (Lactarius, Russulales) in association with different pine hosts. A time-course study of changes in gene expression during the development of L. deliciosus–Pinus taeda symbiosis identified 6 to 594 differentially expressed fungal genes at various developmental stages. Up- or down-regulated genes are involved in signaling pathways, nutrient transport, cell wall modifications, and plant defenses. A high number of genes coding for secreted proteases, especially sedolisins, were induced during root colonization. In contrast, only a few genes encoding mycorrhiza-induced small secreted proteins were identified. This feature was confirmed in several other Lactarius species in association with various pines. Further comparison among all these species revealed that each Lactarius species encodes a highly specific symbiotic gene repertoire, a feature possibly related to their host-specificity. This study provides insights on the genetic basis of symbiosis in an ectomycorrhizal order, the Russulales, which was not investigated so far.

1. A diverse group of arthropods have adapted to the niches found inside the nests of social insects. Studies mostly focused on very specialised parasites residing in the brood chambers. However, the biology and strategies of symbionts occupying other niches, such as waste dumps, are underexplored. 2. Using a series of complementary experiments, this study demonstrated that the Mediterranean beetle Oochrotus unicolor has adapted to the waste dump niche found in the nests of Messor harvester ants. 3. Laboratory experiments confirmed field observations that the beetle preferentially resided in the refuse pits. Next, it was shown that the beetles readily consumed seeds and flour, whereas other food sources were poorly accepted and ant brood was never even eaten. The beetles did not elicit a strong aggression response in Messor ants, and they could tolerate very high densities of workers without clear costs. The beetles modestly mimicked the nest recognition cues of their Messor host. This imperfect mimicry could promote the adoption of the beetle in the ant colony, in concert with mechanical defence generated by its tank‐like body. Isolation of the beetle from its host did not significantly affect the beetle's chemical cuticular profile nor did it provoke elevated ant aggression, indicating that the beetle does not acquire the chemicals passively from its host. 4. This paper discusses the fact that waste dumps in social insect nests are hotspots for arthropod symbionts. It shows that symbionts in this niche may employ behavioural, trophic and chemical strategies that are different from those found in other niches of social insect nests. ispartof: ECOLOGICAL ENTOMOLOGY vol:45 issue:3 pages:583-593 status: published

During the legume-rhizobium symbiotic interaction, rhizobial invasion of legumes is primarily mediated by a plant-made tubular invagination called an infection thread (IT). Here, we identify a gene in Lotus japonicus encoding a leucine-rich repeat receptor-like kinase (LRR-RLK), RINRK1 (Rhizobial Infection Receptor-like Kinase1), that is induced by Nod factors (NFs) and is involved in IT formation but not nodule organogenesis. A paralog, RINRK2, plays a relatively minor role in infection. RINRK1 is required for full induction of early infection genes, including Nodule Inception (NIN), encoding an essential nodulation transcription factor. RINRK1 displayed an infection-specific expression pattern, and NIN bound to the RINRK1 promoter, inducing its expression. RINRK1 was found to be an atypical kinase localized to the plasma membrane and did not require kinase activity for rhizobial infection. We propose RINRK1 is an infection-specific RLK, which may specifically coordinate output from NF signaling or perceive an unknown signal required for rhizobial infection.

We revise the genus Metaplagia Coquillett, 1895 and describe five new species from Area de Conservación Guanacaste (ACG) in northwestern Costa Rica. All new species were reared from an ongoing inventory of wild-caught caterpillars spanning a variety of species within the family Sphingidae (Lepidoptera: Sphingidae). Our study provides a concise description of each new species using morphology, life history, molecular data and photographic documentation. In addition to the new species, the authors provide a re-description of the genus and a revised key to the species of Metaplagia. The following five new species of Metaplagia are described: Metaplagia leahdennisae Fleming & Wood sp. n., Metaplagia lindarobinsonae Fleming & Wood sp. n., Metaplagia paulinesaribasae Fleming & Wood sp. n., Metaplagia robinsherwoodae Fleming & Wood sp. n. and Metaplagia svetlanakozikae Fleming & Wood sp. n. The following is proposed by Fleming & Wood as new combination of Plagiomima Brauer & Bergenstamm, 1891: Plagiomima latifrons (Reinhard, 1956) comb. n.

The soft ticks (Ixodida: Argasidae) are ectoparasites of terrestrial vertebrates with a wide geographic distribution, occurring on all continents. These ticks are obligate blood-feeders, most of them show high degrees of host-specialization and several species in arid and tropical regions are important parasites of livestock and men. Species commonly occurring on domestic animals and man are generally well-known, with many studies focusing on their ecology, distribution or vectorial role. However, wildlife-specialist soft ticks are less studied. Nearly half of all soft tick species are bat specialists, with five species (Carios vespertilionis, Chiropterargas boueti, Chiropterargas confusus, Reticulinasus salahi, and Secretargas transgariepinus) occurring in the Western Palearctic. There is no comprehensive study on the distribution, hosts or pathogens in these soft ticks, although most species were shown to carry several viral, bacterial, or protozoan pathogens and also to occasionally infest humans. Based on a literature survey and 1,120 distinct georeferenced records, we present here the geographical range, host selection and vectorial potential for bat-specialist soft ticks occurring in the Western Palearctic (chiefly Europe, North Africa, and the Middle East). Carios vespertilionis shows the largest distribution range and was found on most host species, being ubiquitous wherever crevice-roosting bats occur. All the other species were located only in areas with Mediterranean climate, with Ch. boueti, Chiropteraragas confusus, and R. salahi are missing entirely from Europe. These three species have a host spectrum of bats roosting primarily in caves, while S. transgariepinus and Ca. vespertilionis is feeding primarily on crevice-roosting bat species. All but one of these soft tick species are known to feed on humans and may be vectors of important disease agents (Rickettsia spp., Borrelia spp., Bartonella spp., Ehrlichia spp., Babesia spp., several nairo-, and flaviviruses). As several crevice-roosting bat species show a continuous adaptation to human-altered areas, with certain species becoming common city-dwellers in the Western Palearctic, the study of bat specialist soft ticks is also important from an epidemiologic point of view.

Symbiotic nitrogen fixation (SNF) process makes legume crops self-sufficient in nitrogen (N) in sharp contrast to cereal crops that require an external input by N-fertilizers. Since the latter process in cereal crops results in a huge quantity of greenhouse gas emission, the legume production systems are considered efficient and important for sustainable agriculture and climate preservation. Despite benefits of SNF, and the fact that chemical N-fertilizers cause N-pollution of the ecosystems, the focus on improving SNF efficiency in legumes did not become a breeder’s priority. The size and stability of heritable effects under different environment conditions weigh significantly on any trait useful in breeding strategies. Here we review the challenges and progress made toward decoding the heritable components of SNF, which is considerably more complex than other crop allelic traits since the process involves genetic elements of both the host and the symbiotic rhizobial species. SNF-efficient rhizobial species designed based on the genetics of the host and its symbiotic partner face the test of a unique microbiome for its success and productivity. The progress made thus far in commercial legume crops with relevance to the dynamics of host–rhizobia interaction, environmental impact on rhizobial performance challenges, and what collectively determines the SNF efficiency under field conditions are also reviewed here.

International audience; Sonchus oleraceus L. (Asteraceae), an annual species native to Eurasia and northern Africa, is among the most widely distributed plant species on Earth. In Australia, S. oleraceus, is a common weed in disturbed areas such as crop fields, pastures, gardens and roadsides. In agricultural settings, it can dominate fallows and cultivated fields where it uses stored soil moisture and reduces crop yield. This weed has also developed herbicide resistance, predicating the need for alternative management solutions. In this context, we undertook field surveys and preliminary host range studies in the native range of S. oleraceus to determine the feasibility of developing classical biological control solutions for Australia. Fifty-nine phytophagous arthropod species were recorded and nine pathogenic fungi were recovered from disease symptoms. Four arthropod species were selected for initial host-specificity testing based on information available in the literature. Preliminary host-specificity tests were also performed with representative isolate(s) of six of the pathogenic fungi. All these candidate agents were shown in the tests to affect key native species in Australia in the same subtribe as S. oleraceus (i.e. Sonchus hydrophilus and Actites megalocarpus). The results of our investigations suggest that classical biological control may not be a feasible option for the management of S. oleraceus in Australia, and that alternative integrated weed management tactics may need to be pursued to mitigate the impacts of this weed.

Parasitism is one of the most diverse and abundant modes of life, and of great ecological and evolutionary importance. Notwithstanding, large groups of parasites remain relatively understudied. One particularly unique form of parasitism is hyperparasitism, where a parasite is parasitized itself. Bats (Chiroptera) may be parasitized by bat flies (Diptera: Hippoboscoidea), obligate blood-sucking parasites, which in turn may be parasitized by hyperparasitic fungi, Laboulbeniales (Ascomycota: Laboulbeniomycetes). In this study, we present the global tritrophic associations among species within these groups and analyze their host specificity patterns. Bats, bat flies, and Laboulbeniales fungi are shown to form complex networks, and sixteen new associations are revealed. Bat flies are highly host-specific compared to Laboulbeniales. We discuss possible future avenues of study with regard to the dispersal of the fungi, abiotic factors influencing the parasite prevalence, and ecomorphology of the bat fly parasites., publishedVersion

Although parasites represent a major component of biodiversity, they remain poorly assessed, especially in remote regions. In this study, we screened 461 reptiles from Socotra, the largest and most biologically diverse archipelago in Arabia. Using 18S rRNA primers, we detected various apicomplexan parasites, namely haemogregarines, sarcocystids and eimeriids. Haemogregarines were the most common and genetically diverse, followed by sarcocystids (genus Sarcocystis) and eimeriids (genera Isospora and Lankesterella). All were related to parasites of other reptiles, including species from Arabia, Northern Africa and Asia. Like their 29 endemic reptile hosts, almost all Socotran parasites presented high genetic divergence and ecological differences from those found elsewhere, and probably represent undescribed endemic species. Among hosts, skinks were the most parasitized, which contrasted with similar studies from other areas, probably due to their more generalist diet and habitat use. As expected due to its high species richness, geckos harboured the highest parasite diversity in the archipelago. Parasite diversity also seemed to be correlated to island size, as the largest island harboured most haplotypes. This study emphasizes the importance of screening parasites in wild hosts from remote regions and of considering host ecology to understand disease transmission across taxa., Some authors were supported by ‘Fundação para a Ciência e Tecnologia’ (FCT) two Ph.D. and one postdoc grants (B.T., PD/BD/52601/2014; J.P.M., SFRH/BD/74305/2010; and R.V., SFRH/BPD/79913/2012, respectively), supported under the Programa Operacional Potencial Humano – Quadro de Referência Estratégico Nacional funds (POPH-QREN) from the European Social Fund (ESF) and Portuguese ‘Ministério da Educação e Ciência’. This study was part of B.T.'s thesis dissertation. Some authors were supported by FCT contracts (A.P., IF/01257/2012, and R.V., contract from FCT national funds from ‘Norma transitória’ DL57/2016/CP1440/CT0002); and by a grant from the Ministerio de Ciencia Innovación y Universidades co-funded by FEDER (S.C., PGC2018-098290-B-I00). This work was funded by projects from the Ministerio de Economía y Competitividad, Spain, co-funded by FEDER (CGL2012-36970, led by S.C.) with the support of Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya (2017-SGR-991, led by S.C.); the Mohamed bin Zayed Species Conservation Fund (project 13055714, led by R.V.), and FCT (IF01257/2012/CP0159/CT0005 IF project, led by A.P.).

BackgroundMonogenea van Beneden, 1858 is a group of parasitic flatworms, commonly found infecting bony fish. Several genera, such asCichlidogyrusPaperna, 1960, are reported to include potential pathogenic species that can negatively impact aquaculture fish stocks. They can switch from introduced to native fish and vice versa. In Africa (and all over the world), fish species belonging to Cichlidae are often kept in aquaculture and represent a major source of food. Thus, research on the biodiversity and occurrence of monogenean species on these fish is of importance for aquaculture and conservation. The present study is a survey of the diversity of species ofCichlidogyrusin the south of the Democratic Republic of the Congo (DRC) on three cichlid species:Orthochromissp. ‘Lomami’,Serranochromiscf.macrocephalus, andTilapia sparrmaniiSmith, 1840.MethodsSpecimens ofCichlidogyruswere isolated from the gills and mounted on glass slides with Hoyer’s medium. The genital and haptoral hard parts were measured and drawn using interference contrast.ResultsIn total, six species ofCichlidogyruswere found, all new to science:C. bulbophallusn. sp. andC. pseudozambezensisn. sp. onS.cf.macrocephalus,C. flagellumn. sp. andC. lobusn. sp. onT. sparrmanii,C. ranulan. sp. onS.cf.macrocephalusandOrthochromissp. ‘Lomami’, andC. maeandern. sp. found onOrthochromissp. ‘Lomami’ andT. sparrmanii. The first four species are considered to be strict specialists,C. ranulan. sp. an intermediate generalist andC. maeandern. sp. a generalist. These parasite species show morphological similarities to species found in the Lower Guinea and Zambezi ichthyofaunal provinces, which might be explained by past river capture events between river systems of the Congo Province and both these regions.ConclusionsSerranochromiscf.macrocephalusandOrthochromissp. ‘Lomami’ can harbour respectively three and two species ofCichlidogyrus, all described in this study.Tilapia sparrmaniican harbour seven species, of which three are described in the present study. These results highlight the species diversity of this parasite genus in the Congo Basin.

Background In Raphanus sativus (Japanese radish), strain D8 of cucumber mosaic virus (CMV-D8) establishes a systemic infection and induces mild mosaic on upper, non-inoculated leaves, whereas strain Y of CMV (CMV-Y) causes only a local infection in the inoculated leaves. Here, we further analyzed the specific viral factor(s) of CMV-D8 that is (are) indispensable for systemic infection in Japanese radish. Methods To identify which genomic RNA(s) is (are) involved in systemic infection in radish, we carried out a pseudorecombination analysis between CMV-D8 and CMV-Y. With recombination analyses between CMV-D8 and CMV-Y using mutant/recombinant RNA2s, chimeric and point-mutated RNA3s, we identified viral factors that are indispensable for systemic infection. Results Viral RNA2 and RNA3 of CMV-D8 facilitated efficient virus spread into the upper, non-inoculated plant tissues of radish (cv. Tokinashi), but not those of CMV-Y. Recombinant RNA2s demonstrated that the 2b protein (2b) and the C-terminus of the 2a protein (2a) of CMV-D8 have a crucial role in systemic infection. In addition, we used chimeric and point-mutated RNA3s to that Pro17 and Pro129 in the coat protein (CP) of CMV-D8 are involved in efficient systemic infection and that Ser51 in the 3a protein (3a) of CMV-D8 has positive effects on systemic spread. The results suggested that these viral factors facilitate systemic infection of CMV-D8 in Japanese radish. Conclusion The C-terminal region of 2a, the entire region of 2b, and supplementary function of either Ser51 in 3a or Pro17/Pro 129 in CP confer systemic infectivity on CMV-D8 in radish. These results further elucidate the complex interaction of viral proteins of CMV to complete systemic infection as a host-specific manner.

This study aimed to evaluate the simultaneous infections of Haemonchus contortus and Haemonchus placei in sheep, as well as the production of hybrids. A parental group of lambs (n = 6) were mix-infected with 2000 infective larvae (L3) of H. placei and 2000 L3 of H. contortus. Faecal samples were taken from each of these six lambs to produce the first generation of L3 (F1-L3) in individual cultures. These F1-L3 were used to infect 12 lambs; six of them were euthanized at 42 days (Group F1-42) and six at 84 days (Group F1-84) post infection. Polymerase chain reaction (PCR) analysis, using species-specific primer pairs, was the gold standard method for identification of Haemonchus adult species and hybrids. The establishment rate of both species was similar in the parental group: 51.7% H. contortus and 48.3% H. placei. Of the 219 adult specimens from groups F1-42 and F1-84 analysed by PCR, eight (3.65%) were hybrids, 111 were H. contortus and 100 were H. placei. The morphological evaluation of the F1-L3 from the parental group showed a predominance of larvae with H. contortus size (51.5%) in comparison with H. placei (42.8%). In the second generation of L3 (F2-L3) produced by the F1-lambs, larvae with H. contortus morphology predominated, with 81.5% in the F1-42 group and 84.0% in the F1-84 group. In conclusion, an artificial mixed infection by H. contortus and H. placei was established in lambs and resulted in the production of a small number of hybrids among their offspring.

Studies on interactions between Orobanche species and their hosts are mainly focused on resistance, radical interactions, and haustorium development. The influence of the host plant on morphology of the parasite under environmental controlled conditions is not reported in the literature. With the aim of filling this gap, the results of cultivation experiments of Orobanche crenata on Vicia faba, V. sativa, Pisum sativum, Cicer arietinum, and Lathyrus clymenum are presented. The tested population of O. crenata infected all the studied hosts but showed preferences toward Vicia and Pisum and, in particular, toward a foreign V. sativa cv. The higher resistance of the evaluated local cv. could be due to coevolution between host and parasite. There was little variation in times of emergence: about 110 days on V. faba, while around 125 on P. sativum, C. arietinum, and V. sativa. The shape and size of flowers of O. crenata were influenced by its hosts. The more flourishing the host, the more vigorous the parasite with respect to overall size, number of flowers, and density of the inflorescence. However, significant variations were also observed in the shape of the calyx and the colour of the corolla and stigma. These observations suggest that other taxa of Orobanche that grow in the wild, which are considered to be different species, could be morphotypes of the same taxon, although a process of speciation may be in progress.

Salmonella entericais a veterinary and zoonotic pathogen of global importance. While murine and cell-based models of infection have provided considerable knowledge about the molecular basis of virulence ofSalmonella, relatively little is known about salmonellosis in naturally-affected large animal hosts such as cattle, which are a reservoir of human salmonellosis. As in humans,Salmonellacauses bovine disease ranging from self-limiting enteritis to systemic typhoid-like disease and exerts significant economic and welfare costs. Understanding the nature and consequences ofSalmonellainteractions with bovine cells will inform the design of effective vaccines and interventions to control animal and zoonotic infections. In calves challenged orally withS. Dublin expressing green fluorescent protein (GFP) we observed that the bacteria were predominantly extracellular in the distal ileal mucosa and within gut-associated lymph nodes 48 h post-infection. Intracellular bacteria, identified by flow cytometry using the GFP signal, were predominantly within MHCII+macrophage-like cells. In contrast to observations from murine models, theseS.Dublin-infected cells had elevated levels of MHCII and CD40 compared to both uninfected cells from the same tissue and cells from the cognate tissue of uninfected animals. Moreover, no gross changes of the architecture of infected lymph nodes were observed as was described previously in a mouse model. In order to further investigateSalmonella-macrophage interactions, net replication ofS. entericaserovars that differ in virulence in cattle was measured in bovine blood-derived macrophages by enumeration of gentamicin-protected bacteria and fluorescence dilution, but did not correlate with host-specificity.

International audience; Effector proteins play crucial roles in determining the outcome of various plant-parasite interactions. Aphids inject salivary effector proteins into plants to facilitate phloem feeding, but some proteins might trigger defense responses in certain plants. The pea aphid, Acyrthosiphon pisum, forms multiple biotypes, and each biotype is specialized to feed on a small number of closely related legume species. Interestingly, all the previously identified biotypes can feed on Vicia faba; hence, it serves as a universal host plant of A. pisum. We hypothesized that the salivary effector proteins have a key role in determining the compatibility between specific host species and A. pisum biotypes and that each biotype produces saliva containing a specific mixture of effector proteins due to differential expression of encoding genes. As the first step to address these hypotheses, we conducted two sets of RNA-seq experiments. RNA-seq analysis of dissected salivary glands (SGs) from reference alfalfa- and pea-specialized A. pisum lines revealed common and line-specific repertoires of candidate salivary effector genes. Based on the results, we created an extended catalogue of A. pisum salivary effector candidates. Next, we used aphid head samples, which contain SGs, to examine biotype-specific expression patterns of candidate salivary genes. RNA-seq analysis of head samples of alfalfa- and pea-specialized biotypes, each represented by three genetically distinct aphid lines reared on either a universal or specific host plant, showed that a majority of the candidate salivary effector genes was expressed in both biotypes at a similar level. Nonetheless, we identified small sets of genes that were differentially regulated in a biotype-specific manner. Little host plant effect (universal vs. specific) was observed on the expression of candidate salivary genes. Analysis of previously obtained genome re-sequenced data of the two biotypes revealed the copy number variations that might explain the differential expression of some candidate salivary genes. In addition, at least four candidate effector genes that were present in the alfalfa biotype but might not be encoded in the pea biotype were identified. This work sets the stage for future functional characterization of candidate genes potentially involved in the determination of plant specificity of pea aphid biotypes

Since the early colonization of land, plants depend, to various extents, on mycorrhizal fungi to meet their nutrient demands. In most mycorrhizal symbioses, plants provide sugars derived from photosynthesis to the fungi, whereas the fungi provide essential minerals to the plant. However, in some plants, the flow of carbon has reversed and the fungi provide carbon to the plants. These plants are called mycoheterotrophs. However, it remains unclear how and under which circumstances trophic modes change and whether transitions in trophic modes are associated with changes in mycorrhizal communities. Here, we review the available literature on mycorrhizal associations and trophic modes in plants. We first outline how trophic modes can be determined and how they differ across plants. We then investigate the evolutionary context under which mycoheterotrophy originated. We also examine the mycorrhizal communities associating with autotrophic, partially mycoheterotrophic and fully mycoheterotrophic plants within different plant families and investigate whether commonalities can be observed. Our overview shows that mycoheterotrophy has originated more than 40 times through evolutionary time and can be found in a wide range of plant groups, including liverworts, lycophytes, ferns, monocots and dicots. Partial mycoheterotrophy appears to be much more common than previously anticipated and represents an almost continuous gradient between autotrophy and full mycoheterotrophy. Comparison of the mycorrhizal communities associating with autotrophic, partial and full mycoheterotrophic plants indicates that, although they share some commonalities, shifts from autotrophy to full mycoheterotrophy are accompanied by either losses or shifts in mycorrhizal partners, suggesting that full or partial loss of photosynthesis selects for different mycorrhizal communities. Synthesis. Partial mycoheterotrophy appears to be much more common than previously thought and represents an almost continuous gradient from autotrophy to full mycoheterotrophy. Evolution to full mycoheterotrophy is challenging as it requires specific adaptations and often a switch to other mycorrhizal partners. More detailed analyses of the functionality of different mycorrhizal systems co‐occurring in the roots of a single plant and the costs of mycorrhizal switching are needed to understand the precise mechanisms leading to full mycoheterotrophy. ispartof: JOURNAL OF ECOLOGY vol:107 issue:4 pages:1567-1581 status: published

The microbial colonization of living surfaces may be affected by several environmental and biological factors and may play an important role in the development and evolution of the holobiont. Antarctica, as an extreme and isolated environment, offers a unique opportunity to study the peculiar and often strict interactions that are established between a benthic host and its symbionts. Despite this, to date the association between microbes and Antarctic benthic invertebrates has been only seldom investigated, resulting in fragmented and poor information. This chapter will be devoted to showcase our current knowledge on prokaryotic (Bacteria and Archaea) and eukaryotic (yeasts and diatoms) microbial symbionts of Antarctic benthic invertebrate hosts, including mainly Porifera and, at to a lesser extent, Cnidaria, Echinodermata and Annelida.

Seven new species ofCichlidogyrusPaperna, 1960 (Monogenea: Dactylogyridae) isolated from the gills of six cichlid host species belonging to four tribes and sampled from the Congolese coastline of Lake Tanganyika (LT) are described:Cichlidogyrus adkoningsisp. nov. fromCyphotilapia frontosa(tribe Cyphotilapiini);C. koblmuellerisp. nov. fromCardiopharynx schoutedeni(Ectodini);C. habluetzelisp. nov. fromC. schoutedeniandC. frontosa;C. antoinepariselleisp. nov. fromInterochromis loocki(Tropheini);C. masilyaisp. nov. fromPetrochromis orthognathus(Tropheini);C. salzburgerisp. nov. fromP. trewavasae, andC. sergemorandisp. nov. fromTylochromis polylepis(Tylochromini). This study represents the first parasitological examination of cyphotilapiine cichlid hosts. Representatives of the Tanganyikan ectodine, tropheine, and tylochromine cichlids previously sampled from various localities in the lake yielded nine, twelve, and two described species ofCichlidogyrus, respectively. The study further includes a morphological characterization of the male copulatory organ of six undescribed species ofCichlidogyrusfound on the gills of the tropheinesI. loockiandP. orthognathus,and on those ofCallochromis melanostigmaandXenotilapia flavipinnis(both Ectodini). Geographical variation in the monogenean fauna ofI. loockiwas observed. The most closely related cichlid species investigated in this study harbouredCichlidogyrusspp. exhibiting some similarities in their sclerotized structures. Thus, our paper provides additional evidence of the high species richness ofCichlidogyrusand the link with their hosts’s phylogenetic affinities in LT.

Bacterial host tropism is a primary determinant of the range of host organisms they can infect. Salmonella serotypes are differentiated into host-restricted and host-adapted specialists, and host-unrestricted generalists. In order to elucidate the underlying molecular mechanisms of host specificity in Salmonella infection, we investigated the role of the intestinal host cell receptor zymogen granule membrane glycoprotein 2 (GP2), which is recognized by FimH adhesin of type 1 fimbriae found in Enterobacteriaceae. We compared four human and two porcine GP2 isoforms. Isoforms were expressed in Sf9 cells as well as in one human (HEp-2) and one porcine (IPEC-J2) cell line. FimH genes of 128 Salmonella isolates were sequenced and the 10 identified FimH variants were compared regarding adhesion (static adhesion assay) and infection (cell line assay) using an isogenic model. We expressed and characterized two functional porcine GP2 isoforms differing in their amino acid sequence to human isoforms by approximately 25%. By comparing all isoforms in the static adhesion assay, FimH variants were assigned to high, low or no-binding phenotypes. This FimH variant-dependent binding was neither specific for one GP2 isoform nor for GP2 in general. However, cell line infection assays revealed fundamental differences: using HEp-2 cells, infection was also FimH variant-specific but mainly independent of human GP2. In contrast, this FimH variant dependency was not obvious using IPEC-J2 cells. Here, we propose an alternative GP2 adhesion/infection mechanism whereby porcine GP2 is not a receptor that determined host-specificity of Salmonella. Salmonella specialists as well as generalists demonstrated similar binding to GP2. Future studies should focus on spatial distribution of GP2 isoforms in the human and porcine intestine, especially comparing health and disease.

Data is presented in support of a phylogenetic reconstruction of one of the largest, and most poorly understood, groups of lice: the Brueelia-complex (Bush et al., 2015 [1]). Presented data include the voucher information and molecular data (GenBank accession numbers) of 333 ingroup taxa within the Brueelia-complex and 30 outgroup taxa selected from across the order Phthiraptera. Also included are phylogenetic reconstructions based on Bayesian inference analyses of combined COI and EF-1α sequences for Brueelia-complex species and outgroup taxa.

15 pages; International audience; How food webs are structured has major implications for their stability and dynamics. While poorly studied to date, arctic food webs are commonly assumed to be simple in structure, with few links per species. If this is the case, then different parts of the web may be weakly connected to each other, with populations and species united by only a low number of links. We provide the first highly resolved description of trophic link structure for a large part of a high-arctic food web. For this purpose, we apply a combination of recent techniques to describing the links between three predator guilds (insectivorous birds, spiders, and lepidopteran parasitoids) and their two dominant prey orders (Diptera and Lepidoptera). The resultant web shows a dense link structure and no compartmentalization or modularity across the three predator guilds. Thus, both individual predators and predator guilds tap heavily into the prey community of each other, offering versatile scope for indirect interactions across different parts of the web. The current description of a first but single arctic web may serve as a benchmark toward which to gauge future webs resolved by similar techniques. Targeting an unusual breadth of predator guilds, and relying on techniques with a high resolution, it suggests that species in this web are closely connected. Thus, our findings call for similar explorations of link structure across multiple guilds in both arctic and other webs. From an applied perspective, our description of an arctic web suggests new avenues for understanding how arctic food webs are built and function and of how they respond to current climate change. It suggests that to comprehend the community-level consequences of rapid arctic warming, we should turn from analyses of populations, population pairs, and isolated predator-prey interactions to considering the full set of interacting species.

We describe seven new species of Spathidexia (Diptera: Tachinidae) reared from Area de Conservación Guanacaste (ACG), northwestern Costa Rica. All were reared from ­various species of ACG caterpillars during an ongoing inventory of caterpillars, their food plants and their parasitoids. By coupling morphology, photographic documentation, life history and molecular data, we provide a clear and concise description of each species. All are known to be previously undescribed as a result of a comprehensive study of the genus by DMW. Spathidexia atripalpus sp. n., Spathidexia juanvialesi sp. n., Spathidexia marioburgosi sp. n., Spathidexia luisrobertogallegosi sp. n., Spathidexia luteola sp. n., Spathidexia hernanrodriguezi sp. n. and Spathidexia aurantiaca sp. n. are all authored and described by Fleming and Wood. Minthodexiopsis Townsend is proposed by Wood as a new synonym of Spathidexia. A new combination proposed by Wood as a result of the new synonymy is S. flavicornis (Brauer & Bergenstamm) comb. n.

The Darién province in eastern Panama is one of the most unexplored and biodiverse regions in the world. The Chucantí Nature Reserve, in Serranía de Majé, consists of a diverse tropical cloud forest ecosystem. The aim of this research was to explore and study host associations of a tripartite system of bats, ectoparasitic flies on bats (Diptera, Streblidae), and ectoparasitic fungi (Ascomycota, Laboulbeniales) that use bat flies as hosts. We captured bats at Chucantí, screened each bat for presence of bat flies, and screened collected bat flies for presence of Laboulbeniales. We mistnetted for 68 mistnet hours and captured 227 bats representing 17 species. We capturedMicronycteris schmidtorum, a species previously unreported in Darién. In addition, we encountered the rarely collectedPlatyrrhinus dorsalis, representing the westernmost report for this species. Of all captured bats, 148 carried bat flies (65%). The number of sampled bat flies was 437, representing 16 species. One species represents a new country record (Trichobius anducei) and five species represent first reports for Darién (Basilia anceps,Anatrichobius scorzai,Nycterophilia parnelli,T. johnsonae,T. parasiticus). All 74 bat fly species currently reported in Panama are presented in tabulated form. Of all screened bat flies, 30 bore Laboulbeniales fungi (7%). Based on both morphology and large ribosomal subunit (LSU) sequence data, we delimited 7 species of Laboulbeniales:Gloeandromyces nycteribiidarum(newly reported for Panama),G. pageanus,G. streblae,Nycteromyces streblidinus, and 3 undescribed species. Of the 30 infected flies, 21 wereTrichobius joblingi. This species was the only host on which we observed double infections of Laboulbeniales.

To study position specificity in the insect-parasitic fungal genus Coreomyces (Laboulbeniaceae, Laboulbeniales), we sampled corixid hosts (Corixidae, Heteroptera) in southern Scandinavia. We detected Coreomyces thalli in five different positions on the hosts. Thalli from the various positions grouped in four distinct clusters in the resulting gene trees, distinctly so in the ITS and LSU of the nuclear ribosomal DNA, less so in the SSU of the nuclear ribosomal DNA and the mitochondrial ribosomal DNA. Thalli from the left side of abdomen grouped in a single cluster, and so did thalli from the ventral right side. Thalli in the mid-ventral position turned out to be a mix of three clades, while thalli growing dorsally grouped with thalli from the left and right abdominal clades. The mid-ventral and dorsal positions were found in male hosts only. The position on the left hemelytron was shared by members from two sister clades. Statistical analyses demonstrate a significant positive correlation between clade and position on the host, but also a weak correlation between host sex and clade membership. These results indicate that sex-of-host specificity may be a non-existent extreme in a continuum, where instead weak preferences for one host sex may turn out to be frequent.

The Lower Congo Basin is characterized by a mangrove-lined estuary at its mouth and, further upstream, by many hydrogeographical barriers such as rapids and narrow gorges. Five localities in the mangroves and four from (upstream) left bank tributaries or pools were sampled. On the gills of Coptodon tholloni, Coptodon rendalli, Hemichromis elongatus, Hemichromis stellifer and Tylochromis praecox, 17 species of parasites (Dactylogyridae & Gyrodactylidae, Monogenea) were found, eight of which are new to science. Six of these are herein described: Cichlidogyrus bixlerzavalai n. sp. and Cichlidogyrus omari n. sp. from T. praecox, Cichlidogyrus calycinus n. sp. and Cichlidogyrus polyenso n. sp. from H. elongatus, Cichlidogyrus kmentovae n. sp. from H. stellifer and Onchobdella ximenae n. sp. from both species of Hemichromis. On Cichlidogyrus reversati a ridge on the accessory piece was discovered that connects to the basal bulb of the penis. We report a putative spillback effect of the native parasites Cichlidogyrus berradae, Cichlidogyrus cubitus and Cichlidogyrus flexicolpos from C. tholloni to the introduced C. rendalli. From our results, we note that the parasite fauna of Lower Congo has a higher affinity with the fauna of West African and nearby freshwater ecoregions than it has with fauna of other regions of the Congo Basin and Central Africa. Six espèces nouvelles de Dactylogyridae (Platyhelminthes, Monogenea) parasites des branchies de cichlidés (Teleostei, Cichliformes) du bassin du Bas Congo. Le cours du Bas Congo est caractérisé par un estuaire bordé de mangroves et, plus en amont, par de nombreuses barrières hydro-géographiques formées de rapides ou de gorges étroites. Nous avons échantillonné dans cinq localités au niveau des mangroves et dans quatre autres en amont sur la rive gauche du fleuve, dans des affluents ou des étangs. Nous avons trouvé, sur les branchies de Coptodon tholloni, Coptodon rendalli, Hemichromis elongatus, Hemichromis stellifer et Tylochromis praecox, 17 espèces de parasites (Dactylogyridae et Gyrodactylidae, Monogenea), dont huit sont nouvelles pour la science. Six d’entre elles sont décrites ici : Cichlidogyrus bixlerzavalai n. sp. et Cichlidogyrus omari n. sp. sur T. praecox, Cichlidogyrus calycinus n. sp. et Cichlidogyrus polyenso n. sp. sur H. elongatus, Cichlidogyrus kmentovae n. sp. sur H. stellifer et Onchobdella ximenae n. sp. sur les deux espèces d’Hemichromis. Nous décrivons, chez Cichlidogyrus reversati, une arête sur la pièce accessoire qui la connecte avec l’ampoule basale basal du pénis. Nous notons un probable transfert latéral des espèces autochtones Cichlidogyrus berradae, Cichlidogyrus cubitus et Cichlidogyrus flexicolpos de C. tholloni vers l’espèce introduite C. rendalli. Nos résultats montrent que la faune parasitaire du Bas Congo présente plus d’affinités avec les faunes d’Afrique de l’Ouest ou des écorégions d’eau douce voisines, qu’avec celles des autres parties du bassin du Congo ou de l’Afrique Centrale.

Glycaspis (Synglycaspis) confined to Australia includes gall-inducing and lerp-forming species that are probably highly specific to different species of Eucalyptus subgenus Eucalyptus. Based on available information, their distribution appears restricted to temperate, south-eastern and southern Australia. This paper reports the biology of an unnamed (suspected new species) of Glycaspis (Synglycaspis) that induces spherical, ostiolate galls on the leaves of Eucalyptus macrorhyncha in central western tablelands of NSW. This species completes two generations in a year. Oviposition elicits a passive response in the leaves of E. macrorhyncha. In this work we demonstrate that the host tissue not only supplies water, but also nutrients to the developing embryo via the embedded pedicel. Feeding action of the first instar initiates the gall and morphogenetic gradients become apparent around the feeding site. These gradients direct gall growth. The gall attains its near final spherical shape during the second instar and this spherical gall remains plugged with sugary material, which all the immature stages secrete from the last abdominal segment. No significant gall growth occurs during the occupation of the gall by the third, fourth and fifth instars. The first and second instars feed on the newly differentiated parenchyma tissue in galls, whereas the third, fourth and fifth instars feed on phloem of galls. Consequently the multi-layer parenchymatous nutritive tissue that initially develops lining the chamber dries and shrivels, when the later instars inhabit galls. This shrinkage induces a gradual thinning of gall walls, which is also aggravated by modest expansive growth of the gall.

Tunga penetrans (Siphonaptera, Tungidae) is a flea that infests humans and a variety of domestic and wild animals. Burrowing of the female flea under the skin causes tungiasis, a disease that manifests in skin lesions that if untreated, can progress to severe complications. In this paper, we report the first case of T. penetrans in a wild giant anteater (Myrmecophaga tridactyla) from Argentina. We describe the lesions and discuss the potential role of the giant anteater as a host or reservoir for this flea. Fil: Di Nucci, Dante L.. Fundación Temaikèn; Argentina Fil: Ezquiaga, María Cecilia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Centro de Estudios Parasitológicos y de Vectores. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. Centro de Estudios Parasitológicos y de Vectores; Argentina Fil: Abba, Agustin Manuel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Centro de Estudios Parasitológicos y de Vectores. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. Centro de Estudios Parasitológicos y de Vectores; Argentina

Colletotrichum destructivum is an important plant pathogen, mainly of forage and grain legumes including clover, alfalfa, cowpea and lentil, but has also been reported as an anthracnose pathogen of many other plants worldwide. Several Colletotrichum isolates, previously reported as closely related to C. destructivum, are known to establish hemibiotrophic infections in different hosts. The inconsistent application of names to those isolates based on outdated species concepts has caused much taxonomic confusion, particularly in the plant pathology literature. A multilocus DNA sequence analysis (ITS, GAPDH, CHS-1, HIS3, ACT, TUB2) of 83 isolates of C. destructivum and related species revealed 16 clades that are recognised as separate species in the C. destructivum complex, which includes C. destructivum, C. fuscum, C. higginsianum, C. lini and C. tabacum. Each of these species is lecto-, epi- or neotypified in this study. Additionally, eight species, namely C. americae-borealis, C. antirrhinicola, C. bryoniicola, C. lentis, C. ocimi, C. pisicola, C. utrechtense and C. vignae are newly described.

The anthracnose pathogen of common bean (Phaseolus vulgaris) is usually identified as Colletotrichum lindemuthianum, while anthracnose of potato (Solanum tuberosum), peppers (Capsicum annuum), tomato (S. lycopersicum) and several other crop plants is often attributed to C. coccodes. In order to study the phylogenetic relationships of these important pathogens, we conducted a multigene analysis (ITS, ACT, TUB2, CHS-1, GAPDH) of strains previously identified as C. lindemuthianum, C. coccodes and other related species, as well as representative species of the major Colletotrichum species complexes. Strains of C. lindemuthianum belonged to a single clade; we selected an authentic specimen as lectotype, and an appropriate specimen and culture from the CBS collection to serve as epitype. Two clades were resolved within C. coccodes s. lat. One clade included the ex-neotype strain of C. coccodes on Solanum, while an epitype was selected for C. nigrum, which represents the oldest name of the second clade, which occurs on Capsicum, Solanum, as well as several other host plants. Furthermore, we recognized C. lycopersici as a synonym of C. nigrum, and C. biologicum as a synonym of C. coccodes.

© 2017 The Authors. Journal of Biogeography Published by John Wiley & Sons Ltd. Aim: Achlorophyllous mycoheterotrophic plants and mycorrhizal fungi often have highly specific interactions that potentially limit the plants’ distribution and diversification potential. However, specificity in biotic interactions may differ considerably over a species’ distribution range and therefore interactions need to be studied over their entire range to assess their evolution in space and time. The present study investigates the biogeographical history of the interaction between five closely related mycoheterotrophic Thismia species and arbuscular mycorrhizal fungi over the distribution range of the plant species. Location: Temperate south-east Australia and New Zealand. Methods: Phylogenetic relationships of Thismia (nrITS and mtcob) and their arbuscular mycorrhizal fungi (partial nrSSU) were reconstructed based on data from 65 plant specimens. The diversification times in Thismia were estimated with a Bayesian relaxed clock approach using a Dioscoreales framework (nrSSU, mtatp1, mtmatR, mtnad1 b-c). Ancestral geographical ranges were reconstructed using a maximum likelihood approach. The same approach was used to reconstruct ancestral mycorrhizal associations. Results: Our analysis shows that Thismia plants have highly specific, phylogenetically conserved and evolutionarily persistent interactions with Rhizophagus fungi. Nevertheless, Thismia was able to diversify and radiate recently due to the wide geographical distribution of the host fungi. In addition, we find that although the mycorrhizal interactions of this clade of mycoheterotrophs are strictly bound to a fungal lineage, host switches remain possible. Main conclusions: In this clade of closely related mycoheterotrophs, dependency on highly specific fungal interactions is the result of phylogenetic niche conservatism, acting over at least 12 million years. Nevertheless, plants that are dependent on highly specific fungal interactions have ample opportunities to disperse and radiate over the geographical range of their hosts. Our study highlights the need to link the ecology and evolution of species interactions over broad geographical and evolutionary scales for understanding mycorrhizal interactions. ispartof: Journal of Biogeography vol:44 issue:8 pages:1869-1879 status: published

Background Aschersonia badia [(Ab) Teleomorph: Hypocrella siamensis] is an entomopathogenic fungus that specifically infects scale insects and whiteflies. We present the whole genome sequence of Ab and its comparison with two clavicipitaceous fungi Metarhizium robertsii (MR: generalist entomopathogen) and M. acridum (MAC: acridid-specific entomopathogen) that exhibit variable host preferences. Here, through comparative analysis of pathogen-host interacting genes, carbohydrate active enzymes, secondary metabolite biosynthesis genes, and sexuality genes, we explore the proteins with possible virulence functions in clavicipitaceous fungi. Comprehensive overview of GH18 family chitinases has been provided to decipher the role of chitinases in claviceptaceous fungi that are either host specific or generalists. Results We report the 28.8 Mb draft genome of Ab and its comparative genome analysis with MR and MAC. The comparative analyses suggests expansion in pathogen-host interacting gene families and carbohydrate active enzyme families in MR, whilst their contraction in Ab and MAC genomes. The multi-modular NRPS gene (dtxS1) responsible for biosynthesis of the secondary metabolite destruxin in MR is not conserved in Ab, similar to the specialist pathogen MAC. An additional siderophore biosynthetic gene responsible for acquisition of iron was identified in MR. Further, the domain survey of chitinases suggest that the CBM50 (LysM) domains, which participate in chitin-binding functions, were not observed in MAC, but were present in Ab and MR. However, apparent differences in frequency of CBM50 domains associated with chitinases of Ab and MR was identified, where MR chitinases displayed a higher proportion of associated CBM50 domains than Ab chitinases. Conclusions This study suggests differences in distribution of dtxS1 and chitinases in specialists (Ab and MAC) and generalists (MR) fungi. Our analysis also suggests the presence of a siderophore biosynthetic gene in the MR genome which perhaps aids in enhanced virulence potential and host range. The variation in association of CBMs, being higher in generalists (MR) and lower in specialists (Ab and MAC) fungi may further be responsible for the differences in host affiliation. Electronic supplementary material The online version of this article (doi:10.1186/s12864-016-2710-6) contains supplementary material, which is available to authorized users.

International audience; Pathogenic Leptospira are the causative agents of leptospirosis, a disease of global concern with major impact in tropical regions. Despite the importance of this zoonosis for human health, the evolutionary and ecological drivers shaping bacterial communities in host reservoirs remain poorly investigated. Here, we describe Leptospira communities hosted by Malagasy bats, composed of mostly endemic species, in order to characterize host-pathogen associations and investigate their evolutionary histories. We screened 947 individual bats (representing 31 species, 18 genera and seven families) for Leptospira infection and subsequently genotyped positive samples using three different bacterial loci. Molecular identification showed that these Leptospira are notably diverse and include several distinct lineages mostly belonging to Leptospira borgpetersenii and L. kirschneri. The exploration of the most probable host-pathogen evolutionary scenarios suggests that bacterial genetic diversity results from a combination of events related to the ecology and the evolutionary history of their hosts. Importantly, based on the data set presented herein, the notable host-specificity we have uncovered, together with a lack of geographical structuration of bacterial genetic diversity, indicates that the Leptospira community at a given site depends on the co-occurring bat species assemblage. The implications of such tight host-specificity on the epidemiology of leptospirosis are discussed.

The present study has identified a new species from the previously monotypic genus Darwiniella Anderson, 1992. Darwiniella angularis sp. n. is similar to D. conjugatum (Darwin, 1854) in external shell morphology and arthropodal characters. Darwiniella conjugatum, however, has a sharper tergal spur and a less obvious adductor plate angle when compared to D. angularis sp. n. Molecular analyses on mitochondrial DNA 12S rDNA and COI regions also support the morphological differences. Sequence divergences in 12S rDNA and COI between D. conjugatum and D. angularis sp. n. are 5% and 13% respectively, which are equivalent to the inter-specific sequence divergences in other barnacles. Both Darwiniella species are common on Cyphastrea Milne-Edwards and Haime, 1848 corals and D. angularis sp. n. is also collected from Astreopora de Blainville, 1830 corals in Taiwan.=

Changes in agricultural management have been identified as the most probable cause for the decline of Skylark (Alauda arvensis) populations in Europe. However, parasitic infections have not been considered as a possible factor influencing this process. Four hundred and thirty-four Skylarks from the Southern Italy and the Netherlands were screened for haemosporidian parasites (Haemosporida) using the microscopy and polymerase chain reaction (PCR)-based methods. The overall prevalence of infection was 19.5%; it was 41.8% in Italian birds and 8.3% in Dutch birds. The prevalence of Plasmodium spp. was 34.1% and 6.5% in Skylarks from Italy and Netherlands, respectively. Approximately 15% of all recorded haemosporidian infections were simultaneous infections both in Italian and Dutch populations. Six different mitochondrial cytochrome b (cyt b) lineages of Plasmodium spp. and three lineages of Haemoproteus tartakovskyi were found. The lineage SGS1 of Plasmodium relictum was the most prevalent at both study sites; it was recorded in 24.7% of birds in Italy and 5.5% in the Netherlands. The lineages SYAT05 of Plasmodium vaughani and GRW11 of P. relictum were also identified with a prevalence of

Polystoma nacialtuneli n. sp. is described from the urinary bladder of the eastern spadefoot, Pelobates syriacus from Turkey. This is the fifth polystome species known from Turkey and the third species in Pelobates. We show that this new parasite species can be distinguished from other polystome species in the area by a combination of characteristics, including parasite size and the shape and size of the hamuli. Polystoma pelobatis from Pelobates cultripes has a pair of well-developed hamuli, while P. fuscus from Pe. fuscus characteristically has a pair of underdeveloped hamuli barely larger than the marginal hooklets. Polystoma nacialtuneli n. sp. has well-developed hamuli that vary significantly in shape. Phylogenetic relationships of P. nacialtuneli n. sp. within Polystoma, supplemented with molecular divergences estimated from internal transcribed spacer 1 (ITS1) sequences, indicate that they are well separated from their closest relatives, i.e. P. fuscus and P. pelobatis from Pe. fuscus and Pe. cultripes, respectively.

The Alcon blue butterfly (Maculinea alcon) parasitizes the nests of several Myrmica ant species. In Denmark, it uses M. rubra and M. ruginodis, but never M. scabrinodis. To further examine the basis of this specificity and local co-adaptation between host and parasite, the pattern of growth and survival of newly-adopted caterpillars of M. alcon in Myrmica subcolonies was examined in the laboratory. M. alcon caterpillars were collected from three populations differing in their host use, and reared in laboratory nests of all three ant species collected from each M. alcon population. While there were differences in the pattern of growth of caterpillars from different populations during the first few months after adoption, which depended on host ant species and the site from which the ants were collected, there was no evidence of major differences in final size achieved. Survival was, however, much higher in nests of M. rubra than in nests of M. ruginodis and M. scabrinodis, even for caterpillars from a population that is never known to use M. rubra as a host in the field. The caterpillars of M. alcon thus do not show local adaptation in their pattern of growth and survival, but instead show a pattern that may reflect different nestmate recognition abilities of the host ants, related to their sociogenetic organisation. The pattern of observed host ant use in the field seems to result from a combination of differences in local host availability and locally adapted infectivity, modulated by smaller differences in survivorship in the nests of the different host ants.

The morbilliviruses are a closely related genus which are very similar in their sequences and share a common receptor, but nevertheless show significant restriction in the host species in which they cause disease. One contribution to this restriction might be the nature of the hosts' responses to infection. We have used microarrays to study the changes in the transcriptome of bovine dendritic cells after infection with wild-type (pathogenic) and vaccine (apathogenic) strains of rinderpest virus (RPV), a bovine pathogen, and a wild-type isolate of measles virus (MV), a morbillivirus that causes disease only in humans and some other primates. We found that, as previously observed in human cells, MV induces a rapid interferon response, while that induced by RPV was delayed and much reduced in magnitude. Pathogenic and apathogenic RPV also showed significant differences, with the latter inducing a slightly higher interferon response as well as significant effects on transcription of genes involved in cell cycle regulation.

Methods for collecting and detecting eriophyoid mites are crucial components in research, taxonomical and biological studies, and control programs for these organisms. Their small size, their specific host-plant interactions and their hidden life-style make them difficult to find in routine inspections. This review examines successful and unsuccessful approaches for collecting eriophyoid mites, and makes recommendations for their detection, supporting studies in taxonomy, ecology, biology, molecular systematics and population genetics.

In order to disentangle the contribution of host and parasite biology to host specificity, we compared the structure and population dynamics of the Gyrodactylus (von Nordmann, 1832) flatworm community living oil sympatric three-spined Gasterosteus aculeatus L. and nine-spined Pungitins pungitius (L.) stickleback. Between April 2002 and March 2003, a small lowland creek was sampled monthly. Species identity of about 75% of the worms per host was determined with a genetic nuclear marker (ITSI). Each stickleback species hosted a characteristic gill- and in-parasitic Gyrodactylus: G. arcuatus Bychowsky, 1933 and G. gasterostei Glaser, 1974 respectively infecting the three-spined stickleback, with G. rarus Wegener, 1910 and G. pungitii Malmberg, 1964 infecting the nine-spined stickleback. Host size and seasonal dynamics were strong determinants of parasite abundance. A strong interaction between host and parasite species determined infection levels and affected three levels of parasite organisation: community structure, population structure and topographical specialisation. Community and population structure were shaped by asymmetric cross-infections, resulting in a net transmission of the Gyrodactylus species typical of the nine-spined stickleback towards the three-spined stickleback. I-lost density was not a major determinant of parasite exchange. Aggregation and topographical specialisation of the Gyrodactylus species of the three-spined stickleback were more pronounced than that of the nine-spined stickleback. ispartof: Folia parasitologica vol:55 issue:3 pages:187-196 ispartof: location:Czech Republic status: published

Obligate myrmecophilous butterfly species, such as Maculinea teleius and M. nausithous that hibernate as caterpillar in nests of the ant species Myrmica scabrinodis and M. rubra respectively, have narrowly defined habitat requirements. One would expect that these butterflies are able to select for sites that meet all their requirements. Both butterfly species occur in habitats where their initial larval resource, the host plant Sanguisorba officinalis, is abundant, while the ant nests are relatively less abundant. With ants in the proximity of a host plant, caterpillars have a chance of being found by their host ant species, while the host plant could become a sink as caterpillars will die when there are no ants close to the host plant. We tested whether females oviposit on host plants in the close proximity of host ants (ant-mediated oviposition) or whether there is random oviposition, using 587 1-m2 plots in and around a nature reserve in The Netherlands where both species were reintroduced. We found that females of both species indeed more often deposit eggs on host plants nearby ants than on host plants without ants. Visits of adult butterflies to plots with the host plant but without the host ants only occurred in years with high butterfly densities. We argue that understanding site selection for oviposition is important for these highly endangered butterfly species with a specialised life cycle, especially after disturbances or reintroductions.

Background We describe two new species in the genus Erythromelana Townsend, 1919 from Area de Conservación Guanacaste (ACG) in northwestern Costa Rica. Both species were reared from wild-caughtcaterpillars of Eois spp. (Lepidoptera: Geometridae). We provide a concise description of each species using morphology, life history, molecular data, and photographic documentation. New information Erythromelana jimmychevezi Fleming & Wood sp. nov. Erythromelana glenriverai Fleming & Wood sp. nov.

Background Lactobacillus reuteri is a gut symbiont of a wide variety of vertebrate species that has diversified into distinct phylogenetic clades which are to a large degree host-specific. Previous work demonstrated host specificity in mice and begun to determine the mechanisms by which gut colonisation and host restriction is achieved. However, how L. reuteri strains colonise the gastrointestinal (GI) tract of pigs is unknown. Results To gain insight into the ecology of L. reuteri in the pig gut, the genome sequence of the porcine small intestinal isolate L. reuteri ATCC 53608 was completed and consisted of a chromosome of 1.94 Mbp and two plasmids of 138.5 kbp and 9.09 kbp, respectively. Furthermore, we generated draft genomes of four additional L. reuteri strains isolated from pig faeces or lower GI tract, lp167-67, pg-3b, 20-2 and 3c6, and subjected all five genomes to a comparative genomic analysis together with the previously completed genome of strain I5007. A phylogenetic analysis based on whole genomes showed that porcine L. reuteri strains fall into two distinct clades, as previously suggested by multi-locus sequence analysis. These six pig L. reuteri genomes contained a core set of 1364 orthologous gene clusters, as determined by OrthoMCL analysis, that contributed to a pan-genome totalling 3373 gene clusters. Genome comparisons of the six pig L. reuteri strains with 14 L. reuteri strains from other host origins gave a total pan-genome of 5225 gene clusters that included a core genome of 851 gene clusters but revealed that there were no pig-specific genes per se. However, genes specific for and conserved among strains of the two pig phylogenetic lineages were detected, some of which encoded cell surface proteins that could contribute to the diversification of the two lineages and their observed host specificity. Conclusions This study extends the phylogenetic analysis of L. reuteri strains at a genome-wide level, pointing to distinct evolutionary trajectories of porcine L. reuteri lineages, and providing new insights into the genomic events in L. reuteri that occurred during specialisation to their hosts. The occurrence of two distinct pig-derived clades may reflect differences in host genotype, environmental factors such as dietary components or to evolution from ancestral strains of human and rodent origin following contact with pig populations. Electronic supplementary material The online version of this article (doi:10.1186/s12864-015-2216-7) contains supplementary material, which is available to authorized users.

Migratory shorebirds show strong dichotomies in habitat choice during both the breeding and nonbreeding season. Whereas High Arctic breeding species are restricted to coastal marine and saline habitats during the nonbreeding season, more southerly breeding species tend to use freshwater habitats away from coasts. It has been proposed that this co-variation in habitat use is a consequence of a single axis of adaptation to pathogens and parasites, which are hypothesized to be relatively scarce in High Arctic, marine, and saline habitats and relatively common at lower latitudes and in freshwater habitats. Here we examine this contrast by comparing the prevalence of avian malaria infections in shorebirds occupying different habitats. We used a PCR-based assay on 1319 individuals from 31 shorebird species sampled in the Arctic, in temperate Europe and in inland and marine habitats in West Africa. Infections mainly occurred in tropical wetlands, with the shorebirds in freshwater inland habitats having significantly higher prevalence of malaria than birds in marine coastal habitats. Infections were not found in birds migrating through Europe even though conspecifics did show infections in tropical Africa. Adults should resist infection better than juveniles, but showed higher malaria prevalence, suggesting that infection probability increases with cumulative exposure. We argue that exposure to vectors is the main factor explaining the habitat-related differences in malaria prevalence.

We describe nine new species in the genus Uramya Robineau-Desvoidy, 1830 from Area de Conservación Guanacaste (ACG) in northwestern Costa Rica. All species were reared from an ongoing inventory of wild-caught caterpillars spanning a variety of families (Lepidoptera: Erebidae; Limacodidae; Megalopygidae; Lasiocampidae and Dalceridae). Our study provides a concise description of each new species using morphology, life history, molecular data, and photographic documentation. In addition to the new species the authors provide a redescription the previously described Uramya sibinivora Guimarães, which was also collected within ACG during this study. We also provide a redescription of the genus, and a revised key to species of Uramya occurring in Central and South America. The following nine new species of Uramya, all authored by Fleming & Wood, are described: Uramya albosetulosa Fleming & Wood sp. nov., Uramya constricta Fleming & Wood sp. nov., Uramya contraria Fleming & Wood sp. nov., Uramya infracta Fleming & Wood sp. nov., Uramya lativittata Fleming & Wood sp. nov., Uramya lunula Fleming & Wood sp. nov., Uramya nitida Fleming & Wood sp. nov., Uramya pannosa Fleming & Wood sp. nov., and Uramya penicillata Fleming & Wood sp. nov. The following are proposed by Wood as new synonyms of Uramya: Olinda Townsend, syn. nov. and Procleonice Townsend, syn. nov. The following new combination is proposed as a result of the new synonymies: Uramya brasiliensis Macquart, comb. nov. Procleonice prolixa Townsend is synonymized under Uramya brevicauda Curran, syn. nov.

The semiaquatic grasshopper Cornops aquaticum Bruner, which is highly specific of Eichhornia crassipes (Pontederiaceae), constitutes one of the most abundant herbivores in the Neotropical wetlands and a possible biological control agent of this weed in South Africa. The aims of this study were (1) to assess the performance of each age category of C. aquaticum on crop plants and the host plant E. crassipes; (2) to assess the feeding preference of this grasshopper on crop plants in presence and absence of E. crassipes; and (3) to determine the presence of nymphs and adults of this grasshopper on crops and in the adjacent wetlands where Eichhornia plants are present. Crop plants included in this study were Zea mays, Oryza sativa, Saccharum officinarum and Ilex paraguariensis. The age categories of C. aquaticum population were nymphs A (instar I and II), nymphs B (instar III to VI) and adults (females and males). To assess grasshopper performance on E. crassipes and crop plants, survival and oviposition were registered during the no-choice tests. To evaluate feeding preference, choice tests with crop plants in presence and absence of E. crassipes were performed. Abundance of C. aquaticum in the crop patches and the wetlands vegetation was assessed using an entomological net. During the no-choice tests, high survival of almost C. aquaticum individuals was observed on Z. mays and E. crassipes, except for nymphs A fed on Z. mays. Ovipositions were registered in E. crassipes, Z. mays and S. officinarum, but only eggs laid in E. crassipes were endophytic and viable. C. aquaticum showed high preference to E. crassipes, whereas Z. mays and S. officinarum were the most preferred plants in the choice test without E. crassipes. We did not find C. aquaticum individuals in the crop patches of Z. mays, O. sativa and S. officinarum, whereas abundance of this grasshopper varied between 28 and 62 individuals captured per minute on Eichhornia floating meadows near these cultivated areas. Our results confirm the high specificity of C. aquaticum to E. crassipes because eggs laid on crop plants are not viable and nymphs A have no possibilities of surviving when fed on these plants. Finally, we recommend carrying out choice tests and field samplings throughout the whole native range of C. aquaticum., Centro de Estudios Parasitológicos y de Vectores

Serovars of Salmonella enterica exhibit different host-specificities where some have broad host-ranges and others, like S. Gallinarum and S. Typhi, are host-specific for poultry and humans, respectively. With the recent availability of whole genome sequences it has been reported that host-specificity coincides with accumulation of pseudogenes, indicating adaptation of host-restricted serovars to their narrow niches. Polyamines are small cationic amines and in Salmonella they can be synthesized through two alternative pathways directly from l-ornithine to putrescine and from l-arginine via agmatine to putrescine. The first pathway is not active in S. Gallinarum and S. Typhi, and this prompted us to investigate the importance of polyamines for virulence in S. Gallinarum. Bioinformatic analysis of all sequenced genomes of Salmonella revealed that pseudogene formation of the speC gene was exclusive for S. Typhi and S. Gallinarum and happened through independent events. The remaining polyamine biosynthesis pathway was found to be essential for oral infection with S. Gallinarum since single and double mutants in speB and speE, encoding the pathways from agmatine to putrescine and from putrescine to spermidine, were attenuated. In contrast, speB was dispensable after intraperitoneal challenge, suggesting that putrescine was less important for the systemic phase of the disease. In support of this hypothesis, a ΔspeE;ΔpotCD mutant, unable to synthesize and import spermidine, but with retained ability to import and synthesize putrescine, was attenuated after intraperitoneal infection. We therefore conclude that polyamines are essential for virulence of S. Gallinarum. Furthermore, our results point to distinct roles for putrescine and spermidine during systemic infection.

The pathogenic bacterium Xanthomonas campestris pv. campestris, the causal agent of black rot of Brassicaceae, manipulates the physiology and the innate immunity of its hosts. Association genetic and reverse-genetic analyses of a world panel of 45 X. campestris pv. campestris strains were used to gain understanding of the genetic basis of the bacterium’s pathogenicity to Arabidopsis thaliana. We found that the compositions of the minimal predicted type III secretome varied extensively, with 18 to 28 proteins per strain. There were clear differences in aggressiveness of those X. campestris pv. campestris strains on two Arabidopsis natural accessions. We identified 3 effector genes (xopAC, xopJ5, and xopAL2) and 67 amplified fragment length polymorphism (AFLP) markers that were associated with variations in disease symptoms. The nature and distribution of the AFLP markers remain to be determined, but we observed a low linkage disequilibrium level between predicted effectors and other significant markers, suggesting that additional genetic factors make a meaningful contribution to pathogenicity. Mutagenesis of type III effectors in X. campestris pv. campestris confirmed that xopAC functions as both a virulence and an avirulence gene in Arabidopsis and that xopAM functions as a second avirulence gene on plants of the Col-0 ecotype. However, we did not detect the effect of any other effector in the X. campestris pv. campestris 8004 strain, likely due to other genetic background effects. These results highlight the complex genetic basis of pathogenicity at the pathovar level and encourage us to challenge the agronomical relevance of some virulence determinants identified solely in model strains., IMPORTANCE The identification and understanding of the genetic determinants of bacterial virulence are essential to be able to design efficient protection strategies for infected plants. The recent availability of genomic resources for a limited number of pathogen isolates and host genotypes has strongly biased our research toward genotype-specific approaches. Indeed, these do not consider the natural variation in both pathogens and hosts, so their applied relevance should be challenged. In our study, we exploited the genetic diversity of Xanthomonas campestris pv. campestris, the causal agent of black rot on Brassicaceae (e.g., cabbage), to mine for pathogenicity determinants. This work evidenced the contribution of known and unknown loci to pathogenicity relevant at the pathovar level and identified these virulence determinants as prime targets for breeding resistance to X. campestris pv. campestris in Brassicaceae.

The ecological success of giant celled, siphonous green algae in coastal habitats has repeatedly been linked to endophytic bacteria living within the cytoplasm of the hosts. Yet, very little is known about the relative importance of evolutionary and ecological factors controlling the intracellular bacterial flora of these seaweeds. Using the marine alga Bryopsis (Bryopsidales, Chlorophyta) as a model, we explore the diversity of the intracellular bacterial communities and investigate whether their composition is controlled by ecological and biogeographic factors rather than the evolutionary history of the host. Using a combination of 16S rDNA clone libraries and denaturing gradient gel electrophoresis analyses, we show that Bryopsis harbours a mixture of relatively few but phylogenetically diverse bacterial species. Variation partitioning analyses show a strong impact of local environmental factors on the presence of Rickettsia and Mycoplasma in their association with Bryopsis . The presence of Flavobacteriaceae and Bacteroidetes, on the other hand, reflects a predominant imprint of host evolutionary history, suggesting that these bacteria are more specialized in their association. The results highlight the importance of interpreting the presence of individual bacterial phylotypes in the light of ecological and evolutionary principles such as phylogenetic niche conservatism to understand complex endobiotic communities and the parameters shaping them.