14 results on '"K. Tello"'
Search Results
2. Application and Validation of the Tricuspid Annular Plane Systolic Excursion/Systolic Pulmonary Artery Pressure Ratio in Patients with Ischemic and Non-Ischemic Cardiomyopathy
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Christoph Liebetrau, J S Wolter, Till Keller, Saskia Haen, MJ Richter, Stanislav Keranov, Andreas Rieth, Steffen D. Kriechbaum, Wiebke Rutsatz, Andreas Rolf, Oliver Dörr, J Vietheer, Holger Nef, Christian Hamm, Pascal Bauer, Beatrice von Jeinsen, and K. Tello
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Medicine (General) ,medicine.medical_specialty ,Longitudinal strain ,Clinical Biochemistry ,Cardiomyopathy ,Article ,LV remodeling ,R5-920 ,medicine.artery ,Internal medicine ,RVEF ,medicine ,In patient ,Interventricular septum ,Ejection fraction ,TAPSE/PASP ,business.industry ,Non ischemic cardiomyopathy ,MRI ,T1 mapping ,RV remodeling ,medicine.disease ,medicine.anatomical_structure ,Pulmonary artery ,Cardiology ,Cardiac magnetic resonance ,business - Abstract
The main aim of this study was to assess the prognostic utility of TAPSE/PASP as an echocardiographic parameter of maladaptive RV remodeling in cardiomyopathy patients using cardiac magnetic resonance (CMR) imaging. Furthermore, we sought to compare TAPSE/PASP to TAPSE. The association of the echocardiographic parameters TAPSE/PASP and TAPSE with CMR parameters of RV and LV remodeling was evaluated in 111 patients with ischemic and non-ischemic cardiomyopathy and cut-off values for maladaptive RV remodeling were defined. In a second step, the prognostic value of TAPSE/PASP and its cut-off value were analyzed regarding mortality in a validation cohort consisting of 221 patients with ischemic and non-ischemic cardiomyopathy. A low TAPSE/PASP (
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- 2021
3. Author response: Vision, challenges and opportunities for a Plant Cell Atlas
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Luis C. Romero, Ai My Luong, Jenny C Mortimer, Nicolas L. Taylor, Sergio Alan Cervantes-Pérez, David W. Ehrhardt, Yana Kazachkova, Adrien Burlaocot, Rajiv K. Tripathi, Alfredo Cruz-Ramírez, Nicholas J. Provart, Uwe John, Shou-Ling Xu, Renate A Weizbauer, Mathew G. Lewsey, José M. Palma, R. Glen Uhrig, Asela J. Wijeratne, Maria J. Harrison, William P Dwyer, Alexander T. Borowsky, Yuling Jiao, Kaushal Kumar Bhati, Edoardo Bertolini, Anna Stepanova, Francisco J. Corpas, Fabio Zanini, Pubudu P. Handakumbura, Dominique C. Bergmann, Devang Mehta, Saroj K Sah, Naomi Nakayama, Claire D McWhite, Jahed Ahmed, Dhruv Lavania, Gazala Ameen, Mather A Khan, Marc Libault, Gergo Palfalvi, Seung Y. Rhee, Laura E. Bartley, Vaishali Arora, Cesar L. Cuevas-Velazquez, Josh T. Cuperus, Benjamin Buer, Amir H. Ahkami, Lachezar A. Nikolov, Selena L Rice, Feng Zhao, Ronelle Roth, Ajay Kumar, Atique ur Rehman, Andrew Farmer, Maida Romera-Branchat, Zhi-Yong Wang, Tuan M Tran, Lydia-Marie Joubert, Le Liu, Julia Bailey-Serres, Fabio Gomez-Cano, Ramin Yadegari, Sanjay Joshi, James Whelan, Batthula Vijaya Lakshmi Vadde, Rachel Shahan, Houlin Yu, Bao-Hua Song, Andrey V Malkovskiy, Arun Kumar, Aaron J. Ogden, Javier Brumos, Xiaohong Zhuang, Oluwafemi Alaba, Harmanpreet Kaur, Tatsuya Nobori, Marisa S. Otegui, Peter H Denolf, Miguel Miñambres Martín, Sakil Mahmud, Tingting Xiang, Lisa I David, Justin W. Walley, Purva Karia, Maite Saura-Sanchez, Pankaj Kumar, Jamie Waese, Ansul Lokdarshi, Suryatapa Ghosh Jha, Sagar Kumar, Matthew M. S. Evans, Hai Ying Yuan, Rajveer Singh, Puneet Paul, Carly A Martin, Robert E. Jinkerson, Dianyi Liu, Rajdeep S. Khangura, Dae Kwan Ko, Tedrick Thomas Salim Lew, Jennifer A N Brophy, Ari Pekka Mähönen, Marija Vidović, Mark-Christoph Ott, Alok Arun, Pinky Agarwal, Pradeep Kumar, Alexandre P. Marand, R. Clay Wright, Moises Exposito-Alonso, Rosangela Sozzani, Tamas Varga, Luigi Di Costanzo, Shyam Solanki, Sixue Chen, Chien-Yuan Lin, Iain C. Macaulay, Tie Liu, Elsa H Quezada-Rodríguez, Trevor M. Nolan, Peter Denolf, Stefania Giacomello, Elizabeth S. Haswell, Nancy George, Noel Blanco-Touriñán, Bruno Contreras-Moreira, Benjamin J. Cole, Abhishek Joshi, Steven P. Briggs, Toshihiro Obata, Kerstin Kaufmann, Kenneth D. Birnbaum, Klaas J. van Wijk, Noah Fahlgren, Kamal Kumar Malukani, Ramesh Katam, Pingtao Ding, Mario A. Arteaga-Vazquez, Marcela K. Tello-Ruiz, Shao-shan Carol Huang, Sunil Kumar Kenchanmane Raju, Venura Herath, George W. Bassel, Christopher R. Anderton, Stefan de Folter, Gary Stacey, and Jie Zhu
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Engineering ,Atlas (topology) ,business.industry ,business ,Data science - Published
- 2021
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4. Vision, challenges and opportunities for a Plant Cell Atlas
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George W. Bassel, Claire D McWhite, Dhruv Lavania, Gazala Ameen, Christopher R. Anderton, Rajiv K. Tripathi, Maria J. Harrison, Josh T. Cuperus, Amir H. Ahkami, William P Dwyer, Bao-Hua Song, Fabio Zanini, Miguel Miñambres Martín, Atique ur Rehman, Cesar L. Cuevas-Velazquez, Ari Pekka Mähönen, Tamas Varga, Gergo Palfalvi, Andrew Farmer, Matthew M. S. Evans, Vaishali Arora, Uwe John, Mathew G. Lewsey, Dominique C. Bergmann, Selena L Rice, Mario A. Arteaga-Vazquez, Dae Kwan Ko, Tedrick Thomas Salim Lew, Jennifer A N Brophy, Jenny C Mortimer, Marc Libault, Bruno Contreras-Moreira, Benjamin J. Cole, Naomi Nakayama, Marcela K. Tello-Ruiz, Ronelle Roth, Laura E. Bartley, Tingting Xiang, Benjamin Buer, Shyam Solanki, Nicolas L. Taylor, Feng Zhao, Shao-shan Carol Huang, Alok Arun, Pinky Agarwal, Marisa S. Otegui, Arun Kumar, Marija Vidović, Pankaj Kumar, Aaron J. Ogden, Sagar Kumar, Puneet Paul, Sergio Alan Cervantes-Pérez, Purva Karia, Stefan de Folter, Kerstin Kaufmann, Gary Stacey, Le Liu, Robert E. Jinkerson, Javier Brumos, Harmanpreet Kaur, Tatsuya Nobori, David W. Ehrhardt, Francisco J. Corpas, Steven P. Briggs, James Whelan, Batthula Vijaya Lakshmi Vadde, Peter H Denolf, Tie Liu, Kamal Kumar Malukani, Elsa H Quezada-Rodríguez, Jahed Ahmed, Hai Ying Yuan, Rajveer Singh, Trevor M. Nolan, Ramesh Katam, Mather A Khan, Jamie Waese, Toshihiro Obata, Ramin Yadegari, Lachezar A. Nikolov, Seung Y. Rhee, Luis C. Romero, Ajay Kumar, Kenneth D. Birnbaum, Nicholas J. Provart, Tuan M Tran, Sakil Mahmud, Maida Romera-Branchat, Pradeep Kumar, Saroj K Sah, Ai My Luong, Alexandre P. Marand, R. Clay Wright, Yana Kazachkova, Moises Exposito-Alonso, Klaas J. van Wijk, Noah Fahlgren, Peter Denolf, Fabio Gomez-Cano, Houlin Yu, Luigi Di Costanzo, Adrien Burlaocot, Alfredo Cruz-Ramírez, Pingtao Ding, Dianyi Liu, Renate A Weizbauer, Suryatapa Ghosh Jha, Jie Zhu, Pubudu P. Handakumbura, Kaushal Kumar Bhati, Edoardo Bertolini, Anna Stepanova, Rachel Shahan, Lisa I David, Justin W. Walley, Lydia-Marie Joubert, Nancy George, Sanjay Joshi, José M. Palma, Rosangela Sozzani, Mark-Christoph Ott, Sixue Chen, Ansul Lokdarshi, Sunil Kumar Kenchanmane Raju, Chien-Yuan Lin, Iain C. Macaulay, Venura Herath, Noel Blanco-Touriñán, Rajdeep S. Khangura, Zhi-Yong Wang, Alexander T. Borowsky, Julia Bailey-Serres, Andrey V Malkovskiy, Xiaohong Zhuang, Oluwafemi Alaba, Yuling Jiao, Abhishek Joshi, Devang Mehta, Maite Saura-Sanchez, Carly A Martin, Stefania Giacomello, Elizabeth S. Haswell, Shou-Ling Xu, R. Glen Uhrig, Asela J. Wijeratne, National Science Foundation (US), Jha, S. G., Borowsky, A. T., Cole, B. J., Fahlgren, N., Farmer, A., Huang, S. C., Karia, P., Libault, M., Provart, N. J., Rice, S. L., Saura-Sanchez, M., Agarwal, P., Ahkami, A. H., Anderton, C. R., Briggs, S. P., Brophy, J. A., Denolf, P., Di Costanzo, L., Exposito-Alonso, M., Giacomello, S., Gomez-Cano, F., Kaufmann, K., Ko, D. K., Kumar, S., Malkovskiy, A. V., Nakayama, N., Obata, T., Otegui, M. S., Palfalvi, G., Quezada-Rodriguez, E. H., Singh, R., Uhrig, R. G., Waese, J., VAN WIJK, K., Wright, R. C., Ehrhardt, D. W., Birnbaum, K. D., Rhee, S. Y., Helsinki Institute of Life Science HiLIFE, and Institute of Biotechnology
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Life Sciences & Biomedicine - Other Topics ,0106 biological sciences ,Engineering ,chlamydomonas reinhardtii ,Chloroplasts ,Plant Cell Atla ,0601 Biochemistry and Cell Biology ,maize ,01 natural sciences ,Zea may ,Plant science ,Molecular level ,cell biology ,Plant Cell Atlas Consortium ,Image Processing, Computer-Assisted ,Biology (General) ,single-cell omic ,2. Zero hunger ,0303 health sciences ,Atlas (topology) ,General Neuroscience ,Agriculture ,General Medicine ,Plants ,ARABIDOPSIS ,C-4 PHOTOSYNTHESIS ,Plant Cell Atlas ,single-cell omics ,Plant development ,VOCABULARY ,SYSTEMS BIOLOGY ,Medicine ,location-to-function ,Life Sciences & Biomedicine ,4D imaging ,QH301-705.5 ,DATABASE ,Science ,Plant Development ,Translational research ,Cellular level ,Environmental stewardship ,Zea mays ,Chloroplast ,General Biochemistry, Genetics and Molecular Biology ,MECHANISMS ,03 medical and health sciences ,Component (UML) ,Plant Cells ,Biology ,030304 developmental biology ,General Immunology and Microbiology ,business.industry ,Feature Article ,Computational Biology ,Plant ,15. Life on land ,11831 Plant biology ,GENE ,Data science ,science forum ,translational research ,13. Climate action ,A. thaliana ,PLASTIDS ,Biochemistry and Cell Biology ,business ,GENERATION ,010606 plant biology & botany - Abstract
With growing populations and pressing environmental problems, future economies will be increasingly plant-based. Now is the time to reimagine plant science as a critical component of fundamental science, agriculture, environmental stewardship, energy, technology and healthcare. This effort requires a conceptual and technological framework to identify and map all cell types, and to comprehensively annotate the localization and organization of molecules at cellular and tissue levels. This framework, called the Plant Cell Atlas (PCA), will be critical for understanding and engineering plant development, physiology and environmental responses. A workshop was convened to discuss the purpose and utility of such an initiative, resulting in a roadmap that acknowledges the current knowledge gaps and technical challenges, and underscores how the PCA initiative can help to overcome them., National Science Foundation 1916797 David W Ehrhardt, Kenneth D Birnbaum, Seung Yon Rhee; National Science Foundation 2052590 Seung Yon Rhee
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- 2021
5. Nosokomial erworbene Pneumonie
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Werner Seeger, K. Tello, MJ Richter, and M. Hecker
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0301 basic medicine ,Gynecology ,medicine.medical_specialty ,business.industry ,030106 microbiology ,Emergency Nursing ,Critical Care and Intensive Care Medicine ,03 medical and health sciences ,0302 clinical medicine ,Emergency Medicine ,Internal Medicine ,medicine ,030212 general & internal medicine ,business - Abstract
Die nosokomiale Pneumonie ist eine haufige Komplikation von Krankenhausaufenthalten mit einer nicht zu vernachlassigenden Letalitat. Im Zuge der Zunahme der multiresistenten Erreger ist eine empirische adaquate Initialtherapie schwierig und bedarf einer genauen Einschatzung des Risikos fur multiresistente Erreger. Dabei ist eine zielgerichtete, zeitlich begrenzte antibiotische Therapie essenziell. Diese sollte nach rationaler und fokussierter Diagnostik erfolgen. Eine Reevaluation der begonnenen Therapie ist unabdingbar, um eventuelle Differenzialdiagnosen nicht zu ubersehen und um die Therapie den mikrobiologischen Befunde sowie dem klinischen und laborchemischen Verlauf anzupassen. In der vorliegenden Ubersichtsarbeit werden die aktuellen nationalen Leitlinien zur Diagnostik und Therapie der nosokomial erworbenen Pneumonie vorgestellt. Besonderer Fokus wird auf die zielgerichtete, risikoadaptierte Therapie gelegt.
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- 2018
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6. Ambulant erworbene Pneumonie
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Andreas Hecker, K. Tello, M. Hecker, Natascha Sommer, Werner Seeger, and Konstantin Mayer
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medicine.medical_specialty ,business.industry ,High mortality ,Guideline ,Emergency Nursing ,Critical Care and Intensive Care Medicine ,medicine.disease ,Individual risk ,Review article ,Patient management ,03 medical and health sciences ,Pneumonia ,0302 clinical medicine ,030228 respiratory system ,Community-acquired pneumonia ,Emergency Medicine ,Internal Medicine ,Medicine ,030212 general & internal medicine ,business ,Intensive care medicine ,Risk assessment - Abstract
Community-acquired pneumonia (CAP) is a frequent and potentially fatal disorder. Due to the notably high mortality within the first days, the immediate initiation of rational diagnostic pathways and treatment is of tremendous prognostic impact. In this review article, the current German guideline on the diagnosis and therapy of CAP is presented. Special focus is put on structured patient management based on the individual risk for early identification of critically ill patients. In particular, risk assessment directly influences rational diagnostics and adequate therapy. New recommendations concerning preventive strategies are also discussed in this article.
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- 2018
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7. Update pulmonalarterielle Hypertonie
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K. Tello, F. Grimminger, Natascha Sommer, MJ Richter, H Gall, Hossein Ardeschir Ghofrani, and Werner Seeger
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Nephrology ,medicine.medical_specialty ,business.industry ,Sildenafil ,medicine.medical_treatment ,Disease ,030204 cardiovascular system & hematology ,Hepatology ,medicine.disease ,Pulmonary hypertension ,Bosentan ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,030228 respiratory system ,chemistry ,Internal medicine ,Internal Medicine ,medicine ,Cardiology ,Lung transplantation ,business ,Prostacyclin receptor ,medicine.drug - Abstract
The term pulmonary arterial hypertension comprises a group of pulmonary vascular diseases of different etiologies that are characterized by similar precapillary vascular remodeling processes and result in exertional dyspnea and right heart insufficiency. The specific pharmacological treatment approach considers the risk of mortality and phenotypical properties and includes treatment with phosphodiesterase type 5 inhibitors, endothelin receptor antagonists and prostanoids, as well as with more novel substances, such as a soluble guanylyl cyclase stimulator and an oral prostacyclin receptor agonist. The prognosis of the disease is mainly determined by the right heart insufficiency for which there is currently no specific pharmacological treatment. Lung transplantation may be offered as a last option. This review provides an overview of the current European guidelines from 2015 and the recommendations of the Cologne Consensus Conference for pulmonary hypertension from 2016.
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- 2017
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8. Violaceous erythematous plaques on a lower limb
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David Jiménez-Gallo, Isabel Villegas-Romero, and K Tello-Collantes
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medicine.medical_specialty ,Histology ,business.industry ,Erythematous plaque ,medicine ,Dermatology ,business ,Lower limb ,Pathology and Forensic Medicine - Published
- 2020
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9. A comprehensive echocardiographic method for risk stratification in pulmonary arterial hypertension
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Monica Mukherjee, Federico Fortuni, MJ Richter, Jeremy A. Mazurek, Paul M. Hassoun, Stephen C. Mathai, Stefano Ghio, A Ghofrani, Valentina Mercurio, Henning Gall, Paul R. Forfia, Laura Scelsi, K. Tello, Ghio, Stefano, Mercurio, Valentina, Fortuni, Federico, Forfia, Paul R, Gall, Henning, Ghofrani, Ardeschir, Mathai, Stephen C, Mazurek, Jeremy A, Mukherjee, Monica, Richter, Manuel, Scelsi, Laura, Hassoun, Paul M, and Tello, Khodr
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Pulmonary and Respiratory Medicine ,Adult ,Male ,medicine.medical_specialty ,Ventricular Dysfunction, Right ,Cumulative Survival Rate ,Treatment goals ,Inferior vena cava ,Risk Assessment ,Internal medicine ,medicine ,Humans ,Aged ,Pulmonary Arterial Hypertension ,business.industry ,Mean age ,Middle Aged ,medicine.vein ,Echocardiography ,Risk stratification ,Right heart ,Cardiology ,Ventricular Function, Right ,Observational study ,Female ,Risk assessment ,business - Abstract
Question addressedEchocardiography is not currently considered as providing sufficient prognostic information to serve as an integral part of treatment goals in pulmonary arterial hypertension (PAH). We tested the hypothesis that incorporation of multiple parameters reflecting right heart function would improve the prognostic value of this imaging modality.Methods and main resultsWe pooled individual patient data from a total of 517 patients (mean age 52±15 years, 64.8% females) included in seven observational studies conducted at five European and United States academic centres. Patients were subdivided into three groups representing progressive degrees of right ventricular dysfunction based on a combination of echocardiographic measurements, as follows. Group 1 (low risk): normal tricuspid annular plane systolic excursion (TAPSE) and nonsignificant tricuspid regurgitation (TR) (n=129); group 2 (intermediate risk): normal TAPSE and significant TR or impaired TAPSE and nondilated inferior vena cava (IVC) (n=256); group 3 (high risk): impaired TAPSE and dilated IVC (n=132). The 5-year cumulative survival rate was 82% in group 1, 63% in group 2 and 43% in group 3. Low-risk patients had better survival rates than intermediate-risk patients (log-rank Chi-squared 12.25; pAnswer to the questionThe proposed echocardiographic approach integrating the evaluation of TAPSE, TR grade and IVC is effective in stratifying the risk for all-cause mortality in PAH patients, outperforming the prognostic parameters suggested by current guidelines.
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- 2020
10. Pulmonale Hypertonie
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K. Tello, MJ Richter, Werner Seeger, Christoph Liebetrau, M. Hecker, Natascha Sommer, A Ghofrani, Markus A. Weigand, and Henning Gall
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medicine.medical_specialty ,business.industry ,General Medicine ,030204 cardiovascular system & hematology ,Soluble Guanylate Cyclase Stimulator ,medicine.disease ,Riociguat ,Pulmonary hypertension ,03 medical and health sciences ,0302 clinical medicine ,Anesthesiology and Pain Medicine ,Intensive care ,Internal medicine ,Right heart ,Cardiology ,Medicine ,Decompensation ,030212 general & internal medicine ,business ,Endothelin receptor ,Soluble guanylyl cyclase ,medicine.drug - Abstract
Pulmonary hypertension (PH) comprises a group of pulmonary vascular diseases that are characterized by progressive exertional dyspnea and right heart insufficiency ultimately resulting in right heart decompensation. The classification is into five clinical subgroups that form the absolutely essential basis for decisions on the indications for different pharmacological and non-pharmacological forms of treatment. The guidelines were updated in 2015 and in addition to the hitherto existing pharmacological treatment options of phosphodiesterase type 5 inhibitors, endothelin receptor antagonists and prostacyclins, the soluble guanylate cyclase stimulator riociguat has now been incorporated for treatment of certain forms of PH. This article provides an overview of the new treatment recommendations in the current guidelines, e. g. for PH patients who are in intensive care units due to surgical interventions or progressive right heart insufficiency.
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- 2016
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11. Medikamentöse Therapie der pulmonalen Hypertonie
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MJ Richter, Natascha Sommer, Henning Gall, Hossein Ardeschir Ghofrani, Werner Seeger, Friedrich Grimminger, and K. Tello
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Gynecology ,medicine.medical_specialty ,medicine.drug_mechanism_of_action ,business.industry ,Internal Medicine ,medicine ,business ,Phosphodiesterase 5 inhibitor - Abstract
Die pulmonale Hypertonie (PH) ist eine chronisch progrediente Erkrankung der pulmonalen Zirkulation multifaktorieller Ursache. Die aktuelle diagnostische Klassifikation der PH unterscheidet funf Hauptgruppen, die als Gemeinsamkeit einen erhohten mittleren pulmonalarteriellen Druck und pulmonalen Gefaswiderstand aufweisen. Klassifiziert werden die pulmonalarterielle Hypertonie (PAH), die PH durch Linksherzerkrankung, die PH bei Lungenerkrankungen und/oder Hypoxie, die chronische thromboembolische pulmonale Hypertonie (CTEPH) und die PH mit unklaren bzw. multifaktoriellen Mechanismen. Aktuelle Fortschritte in der Grundlagenforschung sowie die Zulassung neuer Medikamente und Etablierung von Therapiestrategien vor allem bei der PAH und CTEPH erfordern eine differenzierte Betrachtung der Erkrankung, eine sorgfaltige Diagnosestellung und Therapieeinleitung sowie regelmasige Verlaufskontrollen. In diesem Beitrag mochten wir einen aktuellen Uberblick uber die komplexe medikamentose Therapie der PAH geben.
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- 2015
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12. Doppler-Based Renal Venous Stasis Index as a New Prognostic Marker in Right Heart Failure
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Pascal Bauer, Faeq Husain-Syed, Natascha Sommer, Tanja Schörmann, MJ Richter, K. Tello, Henning Gall, H. Ardeschir Ghofrani, Werner Seeger, Hans-Dieter Walmrath, Claudio Ronco, Babak Yasdani, and Horst-Walter Birk
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medicine.medical_specialty ,Receiver operating characteristic ,business.industry ,Hazard ratio ,Renal function ,medicine.disease ,Pulmonary hypertension ,Venous stasis ,Clinical trial ,Informed consent ,Heart failure ,Internal medicine ,medicine ,business - Abstract
Background: Persistent congestion with deteriorating renal function is an important cause of adverse outcomes in heart failure. Renal Doppler ultrasonography has been proposed to assess renal congestion but is not fully characterized, and current approaches do not reflect the full continuum of renal congestion. We aimed to characterize new approaches to evaluate renal congestion using Doppler ultrasonography. Methods: We enrolled 205 patients with suspected or pre-diagnosed pulmonary hypertension (PH) undergoing right heart catheterization. PH is the most common precursor to right ventricular failure, and thus represents an ideal scenario to study congestion. Patients underwent renal Doppler ultrasonography and assessment of invasive cardiopulmonary haemodynamics, echocardiography, renal function, intra-abdominal pressure, and hormonal and hydration status. Four renal venous flow patterns (RVFPs) and a novel renal venous stasis index (RVSI) were defined. The rate of PH-related morbidity and all-cause mortality (composite endpoint) was evaluated for 1 year post-discharge. Associations with outcome were assessed using Cox proportional hazard models. Prognostic utility of RVSI and RVFP was compared using receiver operating characteristic (ROC) curves. Findings: RVSI increased across the RVFPs (p
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- 2018
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13. AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture
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Christopher J. Mungall, Ethalinda K. S. Cannon, Rex T. Nelson, Pankaj Jaiswal, Daureen Nesdill, Marie-Angélique Laporte, Steven B. Cannon, Margaret R. Woodhouse, James P. Carson, David Grant, Margaret Staton, Jacqueline D. Campbell, Marcela K. Tello-Ruiz, Ramona Walls, Carson M. Andorf, Monica Munoz-Torres, Laurel Cooper, Jill L. Wegrzyn, Victor P. Unda, Sabarinath Subramaniam, Stephen P. Ficklin, Sook Jung, Pierre Larmande, James M. Reecy, Christine G. Elsik, Tanya Z. Berardini, Nathan Dunn, Fiona M. McCarthy, Monica F. Poelchau, Liya Wang, Elizabeth Arnaud, Clement Jonquet, Jodi L. Humann, Nic Herndon, Doreen Ware, Deepak Unni, Emily S. Grau, Leonore Reiser, Clayton Birkett, Doreen Main, Taner Z. Sen, Zhi-Liang Hu, Jing Yu, Gerard R. Lazo, Jason Williams, Carissa A. Park, Bradford Condon, Lacey-Anne Sanderson, Lisa C. Harper, Naama Menda, Andrew Farmer, Sushma Naithani, Dept Hort & Landscape Architecture, Washington State University (WSU), Georgetown University [Washington] (GU), Department of Botany and Plant Pathology, Oregon State University (OSU), University of Missouri [Columbia] (Mizzou), University of Missouri System, Energy and Sustainability Research Division, University of Nottingham, UK (UON), Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University (ISU), Plastes et différenciation cellulaire (PDC), Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS), WEB-CUBE, Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier (LIRMM), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), Stanford School of Medicine [Stanford], Stanford Medicine, Stanford University-Stanford University, German Centre for Integrative Biodiversity Research, Diversité, adaptation, développement des plantes (UMR DIADE), Institut de Recherche pour le Développement (IRD [France-Sud])-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad), Lawrence Berkeley National Laboratory [Berkeley] (LBNL), Department of Animal Science, Department of Entomology and Plant Pathology, The University of Tennessee [Knoxville], Department of Anatomy, Cold Spring Harbor Laboratory, Novartis Institutes for BioMedical Research (NIBR), WEB Architecture x Semantic WEB x WEB of Data (WEB3), Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), and Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])
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[SDV.SA]Life Sciences [q-bio]/Agricultural sciences ,0301 basic medicine ,Computer science ,Best practice ,Data management ,Interoperability ,Biological database ,Breeding ,computer.software_genre ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Databases ,0302 clinical medicine ,Genetic ,Library and Information Studies ,Surveys and Questionnaires ,Databases, Genetic ,2. Zero hunger ,Biological data ,Metadata ,[INFO.INFO-DB]Computer Science [cs]/Databases [cs.DB] ,Data curation ,Database ,business.industry ,[INFO.INFO-WB]Computer Science [cs]/Web ,Agriculture ,Genomics ,Data Format ,[INFO.INFO-TT]Computer Science [cs]/Document and Text Processing ,030104 developmental biology ,Data access ,Gene Ontology ,[INFO.INFO-IR]Computer Science [cs]/Information Retrieval [cs.IR] ,Zero Hunger ,[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM] ,General Agricultural and Biological Sciences ,business ,computer ,030217 neurology & neurosurgery ,Information Systems - Abstract
© The Author(s) 2018. Published by Oxford University Press. The future of agricultural research depends on data. The sheer volume of agricultural biological data being produced today makes excellent data management essential. Governmental agencies, publishers and science funders require data management plans for publicly funded research. Furthermore, the value of data increases exponentially when they are properly stored, described, integrated and shared, so that they can be easily utilized in future analyses. AgBioData (https://www.agbiodata.org) is a consortium of people working at agricultural biological databases, data archives and knowledgbases who strive to identify common issues in database development, curation and management, with the goal of creating database products that are more Findable, Accessible, Interoperable and Reusable. We strive to promote authentic, detailed, accurate and explicit communication between all parties involved in scientific data. As a step toward this goal, we present the current state of biocuration, ontologies, metadata and persistence, database platforms, programmatic (machine) access to data, communication and sustainability with regard to data curation. Each section describes challenges and opportunities for these topics, along with recommendations and best practices.
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- 2018
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14. Strong association of socioeconomic status with genetic ancestry in Latinos: implications for admixture studies of type 2 diabetes
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Liliana Franco, David Reich, Andres Ruiz-Linares, Constanza Duque, Marcela K. Tello-Ruiz, Jose C. Florez, Maribel Rodríguez-Torres, Fuli Yu, Laura Riba, Natalia Gallego, Carlos A. Aguilar-Salinas, Gabriel Bedoya, Alkes L. Price, María Victoria Parra, Ma. Teresa Tusié-Luna, Alberto Villegas, Richa Saxena, and Desmond Campbell
- Subjects
Gerontology ,Diabetes risk ,Endocrinology, Diabetes and Metabolism ,Genetic genealogy ,Population ,Ethnic group ,Genetic admixture ,Type 2 diabetes ,Colombia ,White People ,Article ,Internal Medicine ,medicine ,Humans ,education ,Socioeconomic status ,Mexico ,Genetic association ,education.field_of_study ,business.industry ,Racial Groups ,Hispanic or Latino ,medicine.disease ,United States ,Diabetes Mellitus, Type 2 ,Socioeconomic Factors ,business ,Demography - Abstract
Type 2 diabetes is more prevalent in US American minority populations of African or Native American descent than it is in European Americans. However, the proportion of this epidemiological difference that can be ascribed to genetic or environmental factors is unknown. To determine whether genetic ancestry is correlated with diabetes risk in Latinos, we estimated the proportion of European ancestry in case-control samples from Mexico and Colombia in whom socioeconomic status had been carefully ascertained.We genotyped 67 ancestry-informative markers in 499 participants with type 2 diabetes and 197 controls from Medellín (Colombia), as well as in 163 participants with type 2 diabetes and 72 controls from central Mexico. Each participant was assigned a socioeconomic status scale via various measures.Although European ancestry was associated with lower diabetes risk in Mexicans (OR [95% CI] 0.06 [0.02-0.21], p = 2.0 x 10(-5)) and Colombians (OR 0.26 [0.08-0.78], p = 0.02), adjustment for socioeconomic status eliminated the association in the Colombian sample (OR 0.64 [0.19-2.12], p = 0.46) and significantly attenuated it in the Mexican sample (OR 0.17 [0.04-0.71], p = 0.02). Adjustment for BMI did not change the results.The proportion of non-European ancestry is associated with both type 2 diabetes and lower socioeconomic status in admixed Latino populations from North and South America. We conclude that ancestry-directed search for genetic markers associated with type 2 diabetes in Latinos may benefit from information involving social factors, as these factors have a quantitatively important effect on type 2 diabetes risk relative to ancestry effects.
- Published
- 2009
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