20 results on '"Charles J. Walsby"'
Search Results
2. Copper(II) Pyridyl Aminophenolates: Hypoxia‐Selective, Nucleus‐Targeting Cytotoxins, and Magnetic Resonance Probes
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Kathleen E. Prosser, Gregory A. MacNeil, Rahul T. Kadakia, Annica Chu, Da Xie, Emily L. Que, Bryton R. Varju, and Charles J. Walsby
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Magnetic Resonance Spectroscopy ,Reducing agent ,Ligands ,010402 general chemistry ,Cell morphology ,Cleavage (embryo) ,01 natural sciences ,Redox ,Catalysis ,HeLa ,chemistry.chemical_compound ,Organometallic Compounds ,Humans ,Hypoxia ,Cell Nucleus ,biology ,Cytotoxins ,010405 organic chemistry ,Ligand ,Chemistry ,Organic Chemistry ,General Chemistry ,biology.organism_classification ,3. Good health ,0104 chemical sciences ,Apoptosis ,Biophysics ,Copper ,DNA ,HeLa Cells - Abstract
Targeting the low-oxygen (hypoxic) environments found in many tumours by using redox-active metal complexes is a strategy that can enhance efficacy and reduce the side effects of chemotherapies. We have developed a series of CuII complexes with tridentate pyridine aminophenolate-based ligands for preferential activation in the reduction window provided by hypoxic tissues. Furthermore, ligand functionalization with a pendant CF3 group provides a 19 F spectroscopic handle for magnetic-resonance studies of redox processes at the metal centre and behaviour in cellular environments. The phenol group in the ligand backbone was substituted at the para position with H, Cl, and NO2 to modulate the reduction potential of the CuII centre, giving a range of values below the window expected for hypoxic tissues. The NO2 -substituted complex, which has the highest reduction potential, showed enhanced cytotoxic selectivity towards HeLa cells grown under hypoxic conditions. Cell death occurs by apoptosis, as determined by analysis of the cell morphology. A combination of 19 F NMR and ICP-OES indicates localization of the NO2 complex in HeLa cell nuclei and increased cellular accumulation under hypoxia. This correlates with DNA nuclease activity being the likely origin of cytotoxic activity, as demonstrated by cleavage of DNA plasmids in the presence of the CuII nitro complex and a reducing agent. Selective detection of the paramagnetic CuII complexes and their diamagnetic ligands by 19 F MRI suggests hypoxia-targeting theranostic applications by redox activation.
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- 2021
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3. Transition Metal Ions Promote the Bioavailability of Hydrophobic Therapeutics: Cu and Zn Interactions with RNA Polymerase I Inhibitor CX5461
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Charles J. Walsby, Andrew R. Lewis, Shane Harrypersad, Ada W. Y. Leung, Marcel B. Bally, and Kathleen E. Prosser
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0301 basic medicine ,Denticity ,Pyrazine ,Biological Availability ,chemistry.chemical_element ,Zinc ,Catalysis ,03 medical and health sciences ,chemistry.chemical_compound ,RNA Polymerase I ,RNA polymerase I ,Molecule ,Benzothiazoles ,Naphthyridines ,Cytotoxicity ,Ions ,Organic Chemistry ,Bioinorganic chemistry ,General Chemistry ,Combinatorial chemistry ,3. Good health ,Bioavailability ,030104 developmental biology ,chemistry ,Copper - Abstract
Low aqueous solubility is a major barrier to the clinical application of otherwise promising drug candidates. We demonstrate that this issue can be resolved in medicinal molecules containing potential ligating groups, through the addition of labile transition-metal ions. Incubation of the chemotherapeutic CX5461 with Cu2+ or Zn2+ enables solubilization at neutral pH but does not affect intrinsic cytotoxicity. Spectroscopic and computational studies demonstrate that this arises from coordination to the pyrazine functionality of CX5461 and may involve bidentate coordination at physiological pH.
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- 2018
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4. Octahedral Co(III) salen complexes: the role of peripheral ligand electronics on axial ligand release upon reduction
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Mathew Sutherland, Khrystyna Herasymchuk, Chen Zhang, Tim Storr, John R. Thompson, Charles J. Walsby, Linus Chiang, and Ryan M. Clarke
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010405 organic chemistry ,Stereochemistry ,Chemistry ,Ligand ,Organic Chemistry ,chemistry.chemical_element ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Catalysis ,0104 chemical sciences ,Crystallography ,chemistry.chemical_compound ,Octahedron ,Imidazole ,Cobalt - Abstract
A series of octahedral CoIII salen complexes (where salen represents a N2O2 bis-Schiff-base bis-phenolate framework) were prepared with axial imidazole ligating groups. When using 1-methylimidazole (1-MeIm) axial ligands, the CoIII/CoII reduction potential could be altered by 220 mV via variation of the electron-donating ability of the para-ring substituents (R = H (1), OMe (2), tBu (3), Br (4), NO2 (5), and CF3 (6)). In addition, the irreversibility of the reduction process suggested substantial geometrical changes and axial ligand exchange upon reduction to the more labile CoII oxidation state. Installing an imidazole-coumarin conjugate as the axial ligands resulted in fluorescence quenching when bound to the CoIII centre (R = H (7), OMe (8), and CF3 (9)). The redox properties and fluorescence increase upon ligand release for 7–9 were studied under reducing conditions and in the presence of excess competing ligand (1-MeIm). It was determined that the Lewis acidity of the CoIII centre was the dominant factor in controlling axial ligand exchange for this series of complexes.
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- 2018
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5. Increasing the Bioavailability of RuIIIAnticancer Complexes through Hydrophobic Albumin Interactions
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Edwin W. Y. Wong, Donald T. T. Yapp, Thalia Jang, Boris Wu, Charles J. Walsby, Ryan A. Chard, Michael I. Webb, and May Q. Wong
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Indazoles ,Stereochemistry ,Antineoplastic Agents ,Crystallography, X-Ray ,Ligands ,Ruthenium ,Catalysis ,Protein–protein interaction ,law.invention ,Hydrophobic effect ,chemistry.chemical_compound ,law ,Cell Line, Tumor ,Pyridine ,Organometallic Compounds ,medicine ,Humans ,Solubility ,Cytotoxicity ,Electron paramagnetic resonance ,Serum Albumin ,Cell Proliferation ,Molecular Structure ,Chemistry ,Organic Chemistry ,Electron Spin Resonance Spectroscopy ,General Chemistry ,Human serum albumin ,Bioavailability ,Colonic Neoplasms ,Ruthenium Compounds ,Hydrophobic and Hydrophilic Interactions ,medicine.drug - Abstract
A series of pyridine-based derivatives of the clinically successful Ru(III)-based complexes indazolium [trans-RuCl4(1H-indazole)2] (KP1019) and sodium [trans-RuCl4(1H-indazole)2] (KP1339) have been synthesized to probe the effect of hydrophobic interactions with human serum albumin (hsA) on anticancer activity. The solution behavior and protein interactions of the new compounds were characterized by using electron paramagnetic resonance (EPR) and UV/Vis spectroscopy. These studies have revealed that incorporation of hydrophobic substituents at the 4'-position of the axial pyridine ligand stabilizes non-coordinate interactions with hsA. As a consequence, direct coordination to the protein is inhibited, which is expected to increase the bioavailability of the complexes, thus potentially leading to improved anticancer activity. By using this approach, the lifetimes of hydrophobic protein interactions were extended from 2 h for the unsubstituted pyridine complex, to more than 24 h for several derivatives. Free complexes were tested for their anticancer activity against the SW480 human colon carcinoma cell line, exhibiting low cytotoxicity. Pre-treatment with hsA improved the solubility of every compound and led to some changes in activity. Particularly notable was the difference in activity between the methyl- and dibenzyl-functionalized complexes. The former shows reduced activity after incubation with hsA, indicating reduced bioavailability due to protein coordination. The latter exhibits little activity on its own but, following treatment with hsA, exhibited significant cytotoxicity, which is consistent with its ability to form non-coordinate interactions with the protein. Overall, our studies demonstrate that non-coordinate interactions with hsA are a viable target for enhancing the activity of Ru(III)-based complexes in vivo.
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- 2013
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6. Lowering water oxidation overpotentials using the ionisable imidazole of copper(2-(2'-pyridyl)imidazole)
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Kathleen E. Prosser, Charles J. Walsby, Leea A. Stott, Ellan K. Berdichevsky, and Jeffrey J. Warren
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Electrolysis of water ,010405 organic chemistry ,Chemistry ,Inorganic chemistry ,Metals and Alloys ,chemistry.chemical_element ,General Chemistry ,Overpotential ,010402 general chemistry ,Electrochemistry ,01 natural sciences ,7. Clean energy ,Copper ,Catalysis ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,chemistry.chemical_compound ,Deprotonation ,Materials Chemistry ,Ceramics and Composites ,Hydroxide ,Imidazole - Abstract
Rapid and low overpotential oxidation of water to dioxygen remains a key hurdle for storage of solar energy. Here, we address this issue by demonstrating that deprotonation of 2-(2′-pyridyl)-imidazole (pimH)-ligated copper complexes promotes water oxidation at low overpotential and low catalyst loading. This improves upon other work on homogeneous copper-based water oxidation catalysts, which are highly active, but limited by high overpotentials. EPR and UV-vis spectroscopic evaluation of catalyst speciation shows that at pH ≥ 12 coordinated pimH is deprotonated and a bis(hydroxide) Cu2+ active catalyst forms. Rapid electrochemical water oxidation (35 s−1, 0.85 V onset potential) was observed with 150 μM catalyst. These results demonstrate that catalytic water oxidation potentials can be shifted by hundreds of mV in homogeneous metal catalysts bearing an ionisable imidazole ligand.
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- 2016
7. Gold(II) Phthalocyanine Revisited: Synthesis and Spectroscopic Properties of Gold(III) Phthalocyanine and an Unprecedented Ring-Contracted Phthalocyanine Analogue
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Edwin W. Y. Wong, Akito Miura, Nagao Kobayashi, Qi He, Charles J. Walsby, Soji Shimizu, Daniel B. Leznoff, and Mathew D. Wright
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Chemistry ,Organic Chemistry ,Aromaticity ,General Chemistry ,Ring (chemistry) ,Photochemistry ,Chloride ,Catalysis ,chemistry.chemical_compound ,Paramagnetism ,Ultraviolet visible spectroscopy ,Oxidation state ,Polymer chemistry ,medicine ,Phthalocyanine ,Gold salts ,medicine.drug - Abstract
In 1965, gold(II) phthalocyanine (AuPc, 1) was described to be synthesized from unsubstituted 1,3-diiminoisoindoline and gold powder or AuBr. Compound 1 has been regarded as a rare example of a paramagnetic gold(II) complex. However, its chemistry, especially the oxidation state of the central gold ion, has not been previously explored due to the inherent insolubility of 1 caused by its unsubstituted structure. In our attempt to synthesize soluble AuPcs by using 5,6-di-substituted 1,3-diiminoisoindolines, gold(III) phthalocyanine chloride (3) and a gold(III) complex of an unprecedented ring-contracted phthalocyanine analogue ([18]tribenzo-pentaaza-triphyrin(4,1,1), 4) were isolated. With this discrepant result from the original literature in hand, a reinvestigation of the original AuPc synthesis by using unsubstituted 1,3-diiminoisoindoline and various gold salts (including gold powder and AuBr) was performed, finding that only unsubstituted analogues of 3 and 4 or free-base phthalocyanine were obtained. No gold(II)-containing species could be isolated.
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- 2012
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8. Synthesis of the bulkym-terphenyl phenol Ar*OH (Ar* = C6H3-2,6-Mes2, Mes = 2,4,6-trimethylphenyl) and the preparation and structural characterization of several of its metal complexes
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Gabriele Schatte, Jason A. C. Clyburne, Ian S. MacIntosh, Michael C. Jennings, Qi He, Ojisamola A. Labeodan, Diane A. Dickie, Daisuke D. Ino, and Charles J. Walsby
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Metal ,Nitrobenzene ,chemistry.chemical_compound ,Chemistry ,Stereochemistry ,visual_art ,Terphenyl ,Organic Chemistry ,visual_art.visual_art_medium ,Phenol ,General Chemistry ,Medicinal chemistry ,Catalysis - Abstract
The bulky m-terphenyl phenol Ar*OH 1 (Ar* = C6H3-2,6-Mes2, Mes = 2,4,6-trimethylphenyl) was synthesized via the treatment of Ar*Li with nitrobenzene. The phenol 1 is prepared in modest to good yield using this method. Attempts were also made to prepare 1 through oxidation of the bulky boronic acid Ar*B(OH)2with Oxone®, but this reaction was not suitable for preparative-scale reactions. Side products of the reaction between Ar*Li and nitrobenzene were identified as Ar*[N(O)Ph] and [C6H5N(O)]2and were characterized by X-ray crystallography and EPR spectroscopy. A variety of main-group and transition-metal complexes of Ar*OH were prepared, namely Sn(OAr*)2, Ge(OAr*)2, [N(SiMe3)2]Ge(OAr*), [Me2Al(OAr*)]2, and Ti(NMe2)(OAr*)2. All compounds were characterized spectroscopically and most were studied by single-crystal X-ray diffraction as well.Key words: m-terphenyl, main-group compounds, X-ray crystallography, multinuclear NMR spectroscopy, EPR spectroscopy.
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- 2008
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9. A Mild Pummerer-Like Reaction of Carbohydrate-Based Selenoethers and Thioethers Involving Linear Ozonide Acetates as Putative Intermediates
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Stephanie A. Taylor, Charles J. Walsby, B. Mario Pinto, and Natacha Veerapen
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Singlet oxygen ,Pummerer rearrangement ,Heteroatom ,Regioselectivity ,General Chemistry ,Reaction intermediate ,Biochemistry ,Medicinal chemistry ,Catalysis ,chemistry.chemical_compound ,Acetic anhydride ,Colloid and Surface Chemistry ,chemistry ,Thioether ,Ozonide ,Organic chemistry - Abstract
Pummerer-like rearrangements of carbohydrate-based heterocycles containing selenium and sulfur were investigated. To the best of our knowledge, this is the first report on the Pummerer rearrangement in selenoheterocycles. Ozonization of 1,4-anhydro-D-galactitol or 1,5-anhydroxylitol derivatives containing sulfur or selenium as the ring heteroatom gave unstable intermediates that were attributed to ozonides. These intermediates decomposed upon warming to give selenoxides or sulfoxides. Significantly, addition of acetic anhydride at low temperature to the ozonization reaction mixtures gave Pummerer-rearrangement products after warming to ambient temperature. However, when the isolated selenoxides or sulfoxides were treated with acetic anhydride, Pummerer rearrangement occurred but the sulfoxides required much higher reaction temperatures. The latter results are at variance with the former and are interpreted in terms of the rearrangement of the ozonide acetate intermediates in the former cases. To probe whether the rearrangement proceeded heterolytically via extrusion of singlet oxygen or homolytically via the generation of radical species, trapping experiments with rubrene and electron paramagnetic resonance (EPR) studies with the radical trap DMPO were performed. The results of these experiments are consistent with the intermediacy of radical species and suggest a new and milder synthetic method to generate Pummerer-type products.
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- 2005
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10. Direct observation of activated hydrogen binding to a supported organometallic compound at room temperature
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Ahmad Hamaed, Taner Yildirim, David M. Antonelli, Charles J. Walsby, Michael I. Webb, and Jason M. Simmons
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Hydrogen storage ,Hydrogen ,Chemistry ,Organic Chemistry ,Inorganic chemistry ,Direct observation ,chemistry.chemical_element ,Density functional theory ,General Chemistry ,Dihydrogen complex ,Neutron scattering ,Catalysis ,Inelastic neutron scattering - Published
- 2011
11. Design and synthesis of vanadium hydrazide gels for Kubas-type hydrogen adsorption: a new class of hydrogen storage materials
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Michel Trudeau, Michael I. Webb, David M. Antonelli, Hung V. Mai, Charles J. Walsby, Tuan K. A. Hoang, and Ahmad Hamaed
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Hydrogen ,Chemistry ,Cryo-adsorption ,Surface Properties ,Inorganic chemistry ,Infrared spectroscopy ,Vanadium ,chemistry.chemical_element ,General Chemistry ,Biochemistry ,Catalysis ,Hydrogen storage ,Colloid and Surface Chemistry ,Adsorption ,Electric Power Supplies ,Hydrazines ,Physisorption ,Chemisorption ,Materials Testing ,Organometallic Compounds ,Gels - Abstract
In this paper we demonstrate that the Kubas interaction, a nondissociative form of weak hydrogen chemisorption with binding enthalpies in the ideal 20-30 kJ/mol range for room-temperature hydrogen storage, can be exploited in the design of a new class of hydrogen storage materials which avoid the shortcomings of hydrides and physisorpion materials. This was accomplished through the synthesis of novel vanadium hydrazide gels that use low-coordinate V centers as the principal Kubas H(2) binding sites with only a negligible contribution from physisorption. Materials were synthesized at vanadium-to-hydrazine ratios of 4:3, 1:1, 1:1.5, and 1:2 and characterized by X-ray powder diffraction, X-ray photoelectron spectroscopy, nitrogen adsorption, elemental analysis, infrared spectroscopy, and electron paramagnetic resonance spectroscopy. The material with the highest capacity possesses an excess reversible storage of 4.04 wt % at 77 K and 85 bar, corresponding to a true volumetric adsorption of 80 kg H(2)/m(3) and an excess volumetric adsorption of 60.01 kg/m(3). These values are in the range of the ultimate U.S. Department of Energy goal for volumetric density (70 kg/m(3)) as well as the best physisorption material studied to date (49 kg H(2)/m(3) for MOF-177). This material also displays a surprisingly high volumetric density of 23.2 kg H(2)/m(3) at room temperature and 85 bar--roughly 3 times higher than that of compressed gas and approaching the DOE 2010 goal of 28 kg H(2)/m(3). These materials possess linear isotherms and enthalpies that rise on coverage and have little or no kinetic barrier to adsorption or desorption. In a practical system these materials would use pressure instead of temperature as a toggle and can thus be used in compressed gas tanks, currently employed in many hydrogen test vehicles, to dramatically increase the amount of hydrogen stored and therefore the range of any vehicle.
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- 2010
12. Grignard reagents in ionic solvents: electron transfer reactions and evidence for facile Br-Mg exchange
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Taramatee Ramnial, Jason A. C. Clyburne, Stephanie A. Taylor, and Charles J. Walsby
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Electron transfer reactions ,Inorganic chemistry ,Metals and Alloys ,Ionic bonding ,General Chemistry ,Catalysis ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,chemistry.chemical_compound ,Transmetalation ,Electron transfer ,chemistry ,Reagent ,Ionic liquid ,Materials Chemistry ,Ceramics and Composites ,Mg/exchange ,Phosphonium - Abstract
Grignard reagents form persistent solutions in phosphonium ionic liquids possessing O-donor anions and these solutions are excellent reaction media for electron transfer processes and transmetallation reactions.
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- 2007
13. How an enzyme tames reactive intermediates: positioning of the active-site components of lysine 2,3-aminomutase during enzymatic turnover as determined by ENDOR spectroscopy
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Dawei Chen, Elham Behshad, Perry A Frey, Charles J. Walsby, Nicholas S. Lees, and Brian M Hoffman
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Models, Molecular ,Binding Sites ,biology ,Stereochemistry ,Lysine 2,3-aminomutase ,Radical ,Spectrum Analysis ,Reactive intermediate ,Active site ,Substrate (chemistry) ,General Chemistry ,Isomerase ,complex mixtures ,Biochemistry ,Catalysis ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,chemistry ,biology.protein ,bacteria ,Binding site ,Pyridoxal ,Intramolecular Transferases - Abstract
Lysine 2,3-aminomutase (LAM) utilizes a [4Fe-4S] cluster, S-adenosyl-L-methionine (SAM), and pyridoxal 5'-phosphate (PLP) to isomerize L-alpha-lysine to L-beta-lysine. LAM is a member of the radical-SAM enzyme superfamily in which a [4Fe-4S]+ cluster reductively cleaves SAM to produce the 5'-deoxyadenosyl radical, which abstracts an H-atom from substrate to form 5'-deoxyadenosine (5'-Ado) and the alpha-Lys* radical (state 3 (Lys*)). This radical isomerizes to the beta-Lys* radical (state 4(Lys*)), which then abstracts an H-atom from 5'-Ado to form beta-lysine and the 5'-deoxyadenosyl radical; the latter then regenerates SAM. We use 13C, 1,2H, 31P, and 14N ENDOR to characterize the active site of LAM in intermediate states that contain the isomeric substrate radicals or analogues. With L-alpha-lysine as substrate, we monitor the state with beta-Lys*. In parallel, we use two substrate analogues that generate stable analogues of the alpha-Lys* radical: trans-4,5-dehydro-L-lysine (DHLys) and 4-thia-L-lysine (SLys). This first glimpse of the motions of active-site components during catalytic turnover suggests a possible major movement of PLP during catalysis. However, the principal focus of this work is on the relative positions of the carbons involved in H-atom transfer. We conclude that the active site facilitates hydrogen atom transfer by enforcing van der Waals contact between radicals and their reacting partners. This constraint enables the enzyme to minimize and even eliminate side reactions of highly reactive species such as the 5'-deoxyadensosyl radical.
- Published
- 2006
14. Enzyme control of small-molecule coordination in FosA as revealed by 31P pulsed ENDOR and ESE-EPR
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Brian M. Hoffman, Richard N. Armstrong, Rachel E Rigsby, Charles J. Walsby, and Joshua Telser
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Models, Molecular ,Stereochemistry ,Crystal structure ,Biochemistry ,Catalysis ,law.invention ,Colloid and Surface Chemistry ,Bacterial Proteins ,law ,Molecule ,Computer Simulation ,Electron paramagnetic resonance ,Hyperfine structure ,Glutathione Transferase ,Manganese ,biology ,Hydrogen bond ,Chemistry ,Electron Spin Resonance Spectroscopy ,Active site ,Substrate (chemistry) ,Hydrogen Bonding ,Phosphorus ,General Chemistry ,Resonance (chemistry) ,Crystallography ,Pseudomonas aeruginosa ,biology.protein ,Plasmids - Abstract
FosA is a manganese metalloglutathione transferase that confers resistance to the broad-spectrum antibiotic fosfomycin, which contains a phosphonate group. The active site of this enzyme consists of a high-spin Mn(2+) ion coordinated by endogenous ligands (a glutamate and two histidine residues) and by exogenous ligands, such as substrate fosfomycin. To study the Mn(2+) coordination environment of FosA in the presence of substrate and the inhibitors phosphonoformate and phosphate, we have used (31)P pulsed electron-nuclear double resonance (ENDOR) at 35 GHz to obtain metrical information from (31)P-Mn(2+) interactions. We have found that continuous wave (CW) (31)P ENDOR is not successful in the study of phosphates and phosphonates coordinated to Mn(2+). Parallel studies of phosph(on)ate binding to the Mn(2+) of FosA and to aqueous Mn(2+) ion disclose how the enzyme modifies the coordination of these molecules to the active site Mn(2+). Through analysis of (31)P hyperfine parameters derived from simulations of the ENDOR spectra we have determined the binding modes of the phosph(on)ates in each sample and discerned details of the geometric and electronic structure of the metal center. The (31)P ENDOR studies of the protein samples agree with, or improve on, the Mn-P distances determined from crystal structures and provide Mn-phosph(on)ate bonding information not available from these studies. Electron spin echo electron paramagnetic resonance (ESE-EPR) spectra have also been recorded. Simulation of these spectra yield the axial and rhombic components of the Mn(2+) (S = (5)/(2)) zero-field splitting (zfs) tensor. Comparison of structural inferences based on these zfs parameters both with the known enzyme structures and the (31)P ENDOR results establishes that the time-honored procedure of analyzing Mn(2+) zfs parameters to describe the coordination environment of the metal ion is not valid or productive.
- Published
- 2005
15. Spectroscopic approaches to elucidating novel iron-sulfur chemistry in the 'radical-Sam' protein superfamily
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William E. Broderick, Danilo Ortillo, Brian M. Hoffman, Joan B. Broderick, Mbako R. Nnyepi, Charles J. Walsby, and Jian Yang
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Iron-Sulfur Proteins ,Free Radicals ,Stereochemistry ,chemistry.chemical_element ,Catalysis ,law.invention ,Inorganic Chemistry ,Spectroscopy, Mossbauer ,law ,Organometallic Compounds ,Moiety ,Physical and Theoretical Chemistry ,Electron paramagnetic resonance ,Nuclear Magnetic Resonance, Biomolecular ,Binding Sites ,Deoxyadenosines ,Chemistry ,Electron Spin Resonance Spectroscopy ,SUPERFAMILY ,Protein superfamily ,Resonance (chemistry) ,Sulfur ,Enzymes ,Enzyme Activation ,Models, Chemical ,Radical SAM - Abstract
Electron paramagnetic resonance (EPR), electron-nuclear double resonance (ENDOR), and Mössbauer spectroscopies and other physical methods have provided important new insights into the radical-SAM superfamily of proteins, which use iron-sulfur clusters and S-adenosylmethionine to initiate H atom abstraction reactions. This remarkable chemistry involves the generation of the extremely reactive 5'-deoxyadenosyl radical, the same radical intermediate utilized in B12-dependent reactions. Although early speculation focused on the possibility of an organometallic intermediate in radical-SAM reactions, current evidence points to novel chemistry involving a site-differentiated [4Fe-4S] cluster. The focus of this forum article is on one member of the radical-SAM superfamily, pyruvate formate-lyase activating enzyme, and how physical methods, primarily EPR and ENDOR spectroscopies, are contributing to our understanding of its structure and mechanism. New ENDOR data supporting coordination of the methionine moiety of SAM to the unique site of the [4Fe-4S]2+/+ cluster are presented.
- Published
- 2005
16. Coordination and mechanism of reversible cleavage of S-adenosylmethionine by the [4Fe-4S] center in lysine 2,3-aminomutase
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Dawei Chen, Brian M. Hoffman, Charles J. Walsby, and Perry A. Frey
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Iron-Sulfur Proteins ,S-Adenosylmethionine ,biology ,Lysine 2,3-aminomutase ,Stereochemistry ,Chemistry ,Electron Spin Resonance Spectroscopy ,Active site ,General Chemistry ,Inner sphere electron transfer ,Cleavage (embryo) ,Biochemistry ,Catalysis ,Homolysis ,Electron transfer ,Colloid and Surface Chemistry ,biology.protein ,Radical SAM ,Intramolecular Transferases ,Bond cleavage - Abstract
Lysine 2,3-aminomutase (LAM) catalyzes the interconversion of l-lysine and l-beta-lysine, by a radical mechanism initiated by the reversible, reductive homolytic scission of the C5'-S bond in S-adenosylmethionine (SAM) to form methionine and the 5'-deoxyadenosyl radical at the active site. LAM is a member of a superfamily of enzymes in which a [4Fe-4S]+ cluster with a unique, noncysteinyl coordinated Fe provides the electron required in the cleavage of SAM. Little is known of the mechanism by which the electron is inserted into SAM, and it is not known whether all enzymes of the family employ the same mechanism. Selenium X-ray absorption spectroscopy (XAS) in the reaction of Se-adenosyl-l-selenomethionine (SeSAM) in place of SAM shows that electron transfer occurs by an inner sphere mechanism culminating in direct ligation of selenomethionine to iron upon cleavage of SeSAM. Here, we report an electron nuclear double resonance (ENDOR) spectroscopic investigation of LAM to which has been bound 14N, 17O, 2H, or 13C labeled SAM. It is found that LAM exhibits the same motif for SAM binding to the [4Fe-4S]+,2+ clusters as does pyruvate formate lyase: chelation by the unique iron of the amino and carboxylato groups of SAM; close proximity of the methionine methyl group to the cluster. However, there appear to be significant, and possibly mechanistically important, differences in the details of the binding geometry of SAM. On the basis of the correlation of the ENDOR and XAS spectroscopic results, we postulate a mechanism by which LAM cleaves SAM to generate an intermediate where N, O, and S of the methionine product are bound to the octahedrally coordinated unique Fe of the [4Fe-4S] cluster.
- Published
- 2003
17. Cobalt-substituted zinc finger 3 of transcription factor IIIA: interactions with cognate DNA detected by (31)P ENDOR spectroscopy
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David H. Petering, Charles J. Walsby, Dmitriy Krepkiy, and Brian M. Hoffman
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Models, Molecular ,Stereochemistry ,Xenopus ,Oligonucleotides ,Biochemistry ,Catalysis ,5S ribosomal RNA ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Transcription Factor TFIIIA ,Transcription factor ,Histidine ,Zinc finger ,biology ,Chemistry ,Electron Spin Resonance Spectroscopy ,Zinc Fingers ,General Chemistry ,Cobalt ,DNA ,biology.organism_classification ,Phosphodiester bond ,Spectrophotometry, Ultraviolet ,Cysteine - Abstract
We show the first ENDOR study of the coordination environment of high-spin Co(II) in a biological system with a study of DNA binding to the Co-substituted Cys2/His2 single Zn-finger domain, Finger 3 (F3), from the prototypical zinc finger protein, transcription factor IIIA (TFIIIA) from Xenopus laevis. High covalency to cysteine and histidine is implied by ENDOR-derived 1H couplings to protons of cysteinyl ligands and 14N couplings to histidyl nitrogens, results which support the expectation that Zn(II) and Co(II) bind to F3 in a very similar manner. No changes in either 1H or 14N ENDOR were detected upon binding Co(II)-F3 to C-block DNA. Of particular importance to the use of Co(II) substitution for Zn(II), the ENDOR method shows that Co(II)-F3 undergoes sequence-specific binding to the cognate DNA for Zn(II)-F3, the internal control region (ICR) of the 5S rRNA (C-block). 31P ENDOR measurements yield a Co-31P distance of rCo-P = 8.1(3) A to the nearest backbone phosphodiester of the C-block. Interestingly, a 31P ENDOR doublet observed for Co(II)-F3 in phosphate buffer indicates that inorganic phosphate (Pi) binds at a comparable distance from Co as does the nearest phosphate of DNA, presumably at the same site.
- Published
- 2003
18. An anchoring role for FeS clusters: chelation of the amino acid moiety of S-adenosylmethionine to the unique iron site of the [4Fe-4S] cluster of pyruvate formate-lyase activating enzyme
- Author
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Joan B. Broderick, Charles J. Walsby, William E. Broderick, Danilo Ortillo, and Brian M. Hoffman
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chemistry.chemical_classification ,Iron-Sulfur Proteins ,S-Adenosylmethionine ,Binding Sites ,biology ,Chemistry ,Stereochemistry ,Iron ,Electron Spin Resonance Spectroscopy ,Biotin synthase ,General Chemistry ,Biochemistry ,Cystathionine beta synthase ,Catalysis ,Amino acid ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Acetyltransferases ,biology.protein ,Moiety ,Carboxylate ,Binding site ,Radical SAM ,Spore photoproduct lyase - Abstract
Pyruvate formate-lyase activating enzyme (PFL-AE) generates the catalytically essential glycyl radical on pyruvate formate-lyase via the interaction of the catalytically active [4Fe-4S]+ cluster with S-adenosylmethionine (AdoMet). Like other members of the Fe-S/AdoMet family of enzymes, PFL-AE is thought to function via generation of an AdoMet-derived 5'-deoxyadenosyl radical intermediate; however, the mechanistic steps by which this radical is generated remain to be elucidated. While all of the members of the Fe-S/AdoMet family of enzymes appear to have a unique iron site in the [4Fe-4S] cluster, based on the presence of a conserved three-cysteine cluster binding motif, the role of this unique site has been elusive. Here we utilize 35-GHz pulsed electron nuclear double resonance (ENDOR) studies of the [4Fe-4S]+ cluster of PFL-AE in complex with isotopically labeled AdoMet (denoted [1+/AdoMet]) to show that the unique iron serves to anchor the AdoMet for catalysis. AdoMet labeled with 17O at the carboxylate shows a coupling of A = 12.2 MHz, consistent with direct coordination of the carboxylate to the unique iron of the cluster. This is supported by 13C-ENDOR with the carboxylato carbon labeled with 13C, which shows a hyperfine coupling of 0.71 MHz. AdoMet enriched with 15N at the amino position gives rise to a spectrum with A(15N) = 5.8 MHz, consistent with direct coordination of the amino group to a unique iron of the cluster. Together, the results demonstrate that the unique iron of the [4Fe-4S] cluster anchors AdoMet by forming a classical N/O chelate with the amino and carboxylato groups of the methionine fragment.
- Published
- 2002
19. Electron-nuclear double resonance spectroscopic evidence that S-adenosylmethionine binds in contact with the catalytically active [4Fe-4S](+) cluster of pyruvate formate-lyase activating enzyme
- Author
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William E. Broderick, Brian M. Hoffman, Joan B. Broderick, Charles J. Walsby, Jennifer Cheek, Danilo Ortillo, and Wei Hong
- Subjects
Iron-Sulfur Proteins ,Models, Molecular ,S-Adenosylmethionine ,Stereochemistry ,Biotin synthase ,Biochemistry ,Catalysis ,law.invention ,Colloid and Surface Chemistry ,law ,Acetyltransferases ,Spectroscopy ,Electron paramagnetic resonance ,Nuclear Magnetic Resonance, Biomolecular ,chemistry.chemical_classification ,Electron nuclear double resonance ,Carbon Isotopes ,biology ,Chemistry ,Electron Spin Resonance Spectroscopy ,Resonance ,General Chemistry ,Deuterium ,Enzymes ,Enzyme ,biology.protein ,Radical SAM - Abstract
Pyruvate formate-lyase activating enzyme (PFL-AE) is a representative member of an emerging family of enzymes that utilize iron-sulfur clusters and S-adenosylmethionine (AdoMet) to initiate radical catalysis. Although these enzymes have diverse functions, evidence is emerging that they operate by a common mechanism in which a [4Fe-4S](+) interacts with AdoMet to generate a 5'-deoxyadenosyl radical intermediate. To date, however, it has been unclear whether the iron-sulfur cluster is a simple electron-transfer center or whether it participates directly in the radical generation chemistry. Here we utilize electron paramagnetic resonance (EPR) and pulsed 35 GHz electron-nuclear double resonance (ENDOR) spectroscopy to address this question. EPR spectroscopy reveals a dramatic effect of AdoMet on the EPR spectrum of the [4Fe-4S](+) of PFL-AE, changing it from rhombic (g = 2.02, 1.94, 1.88) to nearly axial (g = 2.01, 1.88, 1.87). (2)H and (13)C ENDOR spectroscopy was performed on [4Fe-4S](+)-PFL-AE (S = (1)/(2)) in the presence of AdoMet labeled at the methyl position with either (2)H or (13)C (denoted [1+/AdoMet]). The observation of a substantial (2)H coupling of approximately 1 MHz ( approximately 6-7 MHz for (1)H), as well as hyperfine-split signals from the (13)C, manifestly require that AdoMet lie close to the cluster. (2)H and (13)C ENDOR data were also obtained for the interaction of AdoMet with the diamagnetic [4Fe-4S](2+) state of PFL-AE, which is visualized through cryoreduction of the frozen [4Fe-4S](2+)/AdoMet complex to form the reduced state (denoted [2+/AdoMet](red)) trapped in the structure of the oxidized state. (2)H and (13)C ENDOR spectra for [2+/AdoMet](red) are essentially identical to those obtained for the [1+/AdoMet] samples, showing that the cofactor binds in the same geometry to both the 1+ and 2+ states of PFL-AE. Analysis of 2D field-frequency (13)C ENDOR data reveals an isotropic hyperfine contribution, which requires that AdoMet lie in contact with the cluster, weakly interacting with it through an incipient bond/antibond. From the anisotropic hyperfine contributions for the (2)H and (13)C ENDOR, we have estimated the distance from the closest methyl proton of AdoMet to the closest iron of the cluster to be approximately 3.0-3.8 A, while the distance from the methyl carbon to the nearest iron is approximately 4-5 A. We have used this information to construct a model for the interaction of AdoMet with the [4Fe-4S](2+/+) cluster of PFL-AE and have proposed a mechanism for radical generation that is consistent with these results.
- Published
- 2002
20. Inside Cover: Gold(II) Phthalocyanine Revisited: Synthesis and Spectroscopic Properties of Gold(III) Phthalocyanine and an Unprecedented Ring-Contracted Phthalocyanine Analogue (Chem. Eur. J. 39/2012)
- Author
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Soji Shimizu, Daniel B. Leznoff, Akito Miura, Charles J. Walsby, Qi He, Edwin W. Y. Wong, Nagao Kobayashi, and Mathew D. Wright
- Subjects
chemistry.chemical_compound ,Ultraviolet visible spectroscopy ,Gold iii ,chemistry ,Organic Chemistry ,Phthalocyanine ,Aromaticity ,Cover (algebra) ,General Chemistry ,Ring (chemistry) ,Photochemistry ,Catalysis - Published
- 2012
- Full Text
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