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Red-spotted grouper (Epinephelus akaara) is a popular aquaculture species with high commercial value in the food industry. However, some infectious diseases may cause mass mortality in cultural practice. Therefore, it is important to understand the immune responses of red-spotted groupers upon pathogenic invasion to develop successful disease prevention mechanisms. Here, we analyzed the transcriptomic profiles of red-spotted grouper head kidney stimulated with lipopolysaccharide (LPS), polyinosinic:polycytidylic acid (poly I:C), and nervous necrosis virus (NNV) and identified differentially expressed genes (DEGs) using RNA-sequencing technology. Cluster analysis of the identified DEGs showed DEG distribution in nine separate clusters based on their expression patterns. However, significant upregulation of most DEGs was observed 6 h after poly I:C stimulation. The DEGs were functionally annotated using Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis, which revealed significant expression of many immune-related signaling pathways, including antiviral, protein translation, cellular protein catabolic process, inflammatory responses, DNA repair, and cell division. Furthermore, selected DEGs were validated by quantitative real-time PCR, confirming the reliability of our findings. Collectively, this study provides insight into the immune responses of red-spotted groupers, thereby expanding the understanding of fish immunity. • The immune challenged head kidney transcriptomes of Epinephelus akaara were constructed using RNA-sequencing technology. • A total of 4936 significant union DEGs were identified from the immune-challenged groups and control (PBS) group. • Functional annotation of the DEGs were associated with immune-related signaling pathways. • The quantitative real-time PCR results validated the reliability of the DEGs. [ABSTRACT FROM AUTHOR]

Interleukin 17D (IL-17D), a pro-inflammatory cytokine, is a signature cytokine of T helper 17 (Th17) cells. However, studies characterizing the functions of IL-17D in teleost are scarce. Therefore, we aimed to characterize the properties of IL-17D in Amphiprion clarkii. We performed spatial and temporal expression, AcIL-17D -mediated antibacterial and inflammatory gene expression, NFκB pathway-related gene expression analyses, and bacterial colony counting and cell protection assays. We found that AcIL-17D contains a 630 bp coding sequence and encodes 210 amino acids. The spatial expression analysis of AcIL-17D in 12 tissues showed ubiquitous expression, with the highest expression in the brain, followed by blood and skin. Temporal expression analysis of AcIL-17D in blood showed upregulated expression at 6 and 24 h (polyinosinic: polycytidylic acid and lipopolysaccharide), 12 h (all stimulants), and 48 h (polyinosinic: polycytidylic acid and Vibrio harveyi). AcIL-17D expression in the blood gradually decreased at later hours in response to all the stimulants. After treatment of fathead minnow (FHM) cells with different recombinant AcIL-17D concentrations, the downstream gene expression analysis showed increased expression of antimicrobial genes in the FHM cells, namely [NK-Lysin (NKL), Hepcidin antimicrobial peptide-1 (HAMP-1), Defensin-β (DEFB1)] and some inflammatory genes such as IL-1β , TNF-α , IL-11 , and STAT3. Further nuclear factor κB (NFκB) subunits (NFκB1 , NFκB2 , RelA, and Rel-B) showed upregulated gene expression at 12 and 24 h. The bacterial colony counting assay using FHM cells showed lower bacterial colony counts in rAcIL-17D-treated cells than in control. Furthermore, the Water-Soluble Tetrazolium Salt (WST -1) assay confirmed the ability of rAcIL-17D in the protection of FHM cells from bacterial infection and conducted the Hoechst 33342 staining upon treatment with rAcIL-17D and rMBP. Therefore, our findings provide important insights into the activation of IL-17D pathway genes in FHM cells, the protective role of AcIL-17D against bacterial infection, and host defense mechanisms in teleost. [Display omitted] • AcIL-17D can recruit the antimicrobial peptides and pro-inflammatory cytokines. • AcIL-17D can reduce growth of bacteria by releasing several molecules. • PcDNA3.1(+) transfected FHM cells exhibited protection against bacteria. • NFκB subunits (NFKB1, NFKB2, Rel-A and Rel-B) showed upregulated gene expression. [ABSTRACT FROM AUTHOR]

Interleukin 17C (IL17C) is a cytokine that regulates innate immunity by recruiting antimicrobial peptides and pro-inflammatory cytokines. In this study, we characterized properties of IL-17C from Amphiprion clarkii also known as yellowtail clownfish (AcIL-17C). The AcIL-17C gene is 489 base pairs long and encodes a 163 amino acid long protein. AcIL-17C includes a signal peptide for localization in the extracellular space and comprises the IL-17 domain. The transcription analysis revealed that AcIL-17C mRNA was ubiquitously expressed in 12 tested tissues. Blood cells treated with polyinosinic:polycytidylic acid (poly (I:C)), lipopolysaccharides (LPS), and Vibrio harveyi , AcIL-17C mRNA expression was upregulated at 6 h (following poly (I:C) and LPS treatments) and at 24 h post-injection (following all treatments). The downstream gene analysis of the epithelial fathead minnow (FHM) cells showed upregulated expression of genes, such as FHM_NK-Lysin , FHM_Hepcidin-1 , FHM_Defensin-β , encoding antimicrobial peptides, as well as of FHM_IL-1β , FHM_TNF-A , FHM_IL-11 , and FHM_STAT3 genes encoding inflammation-related proteins and IL-17C receptor genes FHM_IL-17RA , and FHM_IL-17RE at 12 and 24 h after treatment with AcIL-17C. The bacterial colony counting assay showed lower colony counts of Escherichia coli grown on FHM cells transfected with AcIL-17C carrying vector compared to those grown on control FHM cells. Further, AcIL-17C had a concentration-dependent positive effect on the survival of FHM cells infected with E. coli compared to the percentage of survived control cells. There has been a lack of studies characterizing the functions of teleost IL-17C. Therefore, these findings provide important information about the teleost host defense mechanisms and insights on the IL-17C-mediated antibacterial immunity. [Display omitted] • AcIL-17C is a cytokine that controls innate immunity. • AcIL-17C can upregulate the antimicrobial peptides and pro-inflammatory cytokines expression. • Spatial and temporal expression analysis showed upregulation of AcIL-17C. • AcIL-17C can reduce the growth of bacteria by releasing several molecules. • pcDNA3.1(+)/ AcIL-17C transfected FHM cells exhibited protection against bacteria. [ABSTRACT FROM AUTHOR]

Peroxiredoxin 5 (Prdx5) is the last recognized member of Prdx family. It is a unique, atypical, 2-Cys antioxidant enzyme, protecting cells from death caused by reactive oxygen species (ROS). In this study, the Prdx5 ortholog of Amphiprion clarkii (AcPrdx5) was identified and characterized to explore its specific structural features and functional properties. The open reading frame of AcPrdx5 is 573 bp long and encodes 190 amino acids containing a mitochondrial targeting sequence, thioredoxin domain, and two conserved cysteine residues responsible for antioxidant function. The predicted molecular weight and theoretical isoelectric point of AcPrdx5 are 20.3 kDa and 9.01, respectively. AcPrdx5 sequences were found to be highly conserved across the other orthologs from various organisms and it distinctively clustered within the fish Prdx5 subclade of the phylogenetic tree. The expression of AcPrdx5 was ubiquitously detected among twelve tested tissues, with the highest level in the brain. Furthermore, the mRNA levels of AcPrdx5 in the blood and head-kidney tissues were significantly (p < 0.05) upregulated following polyinosinic-polycytidylic acid (Poly I:C), lipopolysaccharide (LPS), and Vibrio harveyi immune challenge. A concentration-dependent antioxidant potential of recombinant AcPrdx5 was observed in insulin disulfide bond reduction, heavy metal detoxification, free radical and hydrogen peroxide (H 2 O 2) scavenging assays. Additionally, AcPrdx5 overexpression in fathead minnow (FHM) cells upregulated the antioxidant-associated gene (Rrm1, MAPK, SOD2, and PRDX1) expression after H 2 O 2 treatment, and promoted cell viability upon arsenic (As) exposure. In macrophages, AcPrdx5 overexpression effectively suppressed substantial nitric oxide production under lipopolysaccharide treatment. Collectively, our results suggest that AcPrdx5 may play roles in both antioxidant defense system and innate immune response against pathogenic invasions in A. clarkii. • Prdx5 from Amphiprion clarkii (AcPrdx5) was characterized structurally and functionally. • AcPrdx5 showed significant upregulation in blood and head-kidney upon immune challenge. • rAcPrdx5 exhibited significant antioxidant and free-radical scavenging activities. • Antioxidant-associated genes were significantly upregulated in AcPrdx5-overexpressed FHM cells under oxidative stress. • AcPrdx5 overexpression conferred significant cytoprotection to heavy metal and nitrosative stress. [ABSTRACT FROM AUTHOR]

Interferon-related developmental regulator 1 (IFRD1) is a viral responsive gene associated with interferon-gamma. Herein, we identified the IFRD1 gene (EaIFRD1) from red-spotted grouper (Epinephelus akaara), evaluated its transcriptional responses, and investigated its functional features using various biological assays. EaIFRD1 encodes a protein comprising 428 amino acids with a molecular mass of 48.22 kDa. It features a substantial domain belonging to the interferon-related developmental regulator superfamily. Spatial mRNA expression of EaIFRD1 demonstrated the highest expression levels in the brain and the lowest in the skin. Furthermore, EaIFRD1 mRNA expression in grouper tissues exhibited significant modulation in response to immune stimulants, including poly (I:C), LPS, and nervous necrosis virus (NNV) infection. We analyzed downstream gene regulation by examining type Ⅰ interferon pathway genes following EaIFRD1 overexpression. The results demonstrated a significant upregulation in cells overexpressing EaIFRD1 compared to the control after infection with viral hemorrhagic septicemia virus (VHSV). A subcellular localization assay confirmed the nuclear location of the EaIFRD1 protein, consistent with its role as a transcriptional coactivator. Cells overexpressing EaIFRD1 exhibited increased migratory activity, enhancing wound-healing capabilities compared to the control. Additionally, under H 2 O 2 exposure, EaIFRD1 overexpression protected cells against oxidative stress. Overexpression of EaIFRD1 also reduced poly (I:C)-mediated NO production in RAW267.4 macrophage cells. In FHM cells, EaIFRD1 overexpression significantly reduced VHSV virion replication. Collectively, these findings suggest that EaIFRD1 plays a crucial role in the antiviral immune response and immunological regulation in E. akaara. • Interferon-related developmental regulator 1 (IFRD1) in the red spotted grouper was identified and characterized. • EaIFRD1 mRNA expression upregulated significantly in peripheral blood, liver, and spleen cells after the immune challenge. • EaIFRD1 upregulates the wound-healing activity in FHM cells. • EaIFRD1 increased the cell viability under oxidative stress in FHM cells and reduced NO production in macrophages. • Overexpression of EaIFRD1 activates ISGs and reduces VHSV replication. [ABSTRACT FROM AUTHOR]

Galectin 9 (Gal9) is a tandem repeat type ß-galactoside-binding galectin that mediates various cellular biochemical and immunological functions. Many studies have investigated the functional properties of Gal9 in mammals; however, knowledge of fish Gal9 is limited to antibacterial studies. In this context, our aim was to clone Gal9 from Planiliza haematocheilus (PhGal9) and investigate its structural and functional characteristics. We discovered the PhGal9 open reading frame, which was 969 base pairs long and encoded a 322 amino acid protein. PhGal9 had a projected molecular weight of 35.385 kDa but no signal peptide sequence. PhGal9 mRNA was ubiquitously produced in all investigated tissues but was predominant in the intestine, spleen, and brain. Its mRNA expression was increased in response to stimulation by Poly(I:C), LPS, and L. garvieae. The rPhGal9 exhibited a dose-dependent agglutination potential toward gram-positive and gram-negative bacteria at a minimum concentration of 50 μg/mL. Overexpression of PhGal9 promoted M2-like phenotype changes in mouse macrophages, and RT-qPCR analysis of M1 and M2 marker genes confirmed M2 polarization with upregulation of M2 marker genes. In the antiviral assay, the expression levels of Viral Hemorrhagic Septicemia Virus (VHSV) glycoproteins, phosphoproteins, nucleoproteins, non-virion proteins, matrix proteins, and RNA polymerase were significantly reduced in PhGal9-overexpressed cells. Furthermore, the mRNA expression of autophagic genes (sqstm1 , tax1bp1b , rnf13 , lc3 , and atg5) and antiviral genes (viperin) were upregulated in PhGal9 overexpressed cells. For the first time in teleosts, our study demonstrated that PhGal9 promotes M2 macrophage polarization by upregulating M2-associated genes (egr2 and cmyc) and suppressing M1-associated genes (iNOS and IL-6). Furthermore, our results show that exogenous and endogenous PhGal9 prevented VHSV attachment and replication by neutralizing virion and autophagy, respectively. Gal9 may be a potent modulator of the antimicrobial immune response in teleost fish. • PhGal9 expression was upregulated in response to Poly I:C, LPS, and L. garvieae stimulation. • rPhGal9 agglutinates both gram-positive and gram-negative bacteria by directly binding to bacterial glycans. • rPhGal9 demonstrates the ability to neutralize VHSV by binding to viral surface glycoproteins. • PhGal9 restricts VHSV replication by autophagic degradation of viral particles. • PhGal9 overexpression promotes the polarization of naïve macrophages toward M2 phenotype by upregulating M2 marker genes. [ABSTRACT FROM AUTHOR]

Membrane-associated Ring-CH 5 (MARCH5) is a mitochondrial E3 ubiquitin ligase playing a key role in the regulation of mitochondrial dynamics. In mammals, MARCH5 negatively regulates mitochondrial antiviral signaling (MAVS) protein aggregation during viral infection and hampers downstream type I interferon signaling to prevent excessive immune activation. However, its precise functional role in the teleost immune system remains unclear. This study investigated the molecular characteristics and immune response of the MARCH5 ortholog in Amphiprion clarkii (A. clarkii ; AcMARCH5). The predicted AcMARCH5 protein sequence consists of 287 amino acids with a molecular weight of 32.02 kDa and a theoretical isoelectric point of 9.11. It contains four C-terminal transmembrane (TM) domains and an N-terminal RING cysteine-histidine (CH) domain, which directly regulates ubiquitin transfer. Multiple sequence alignment revealed a high level of conservation between AcMARCH5 and its orthologs in other vertebrate species. Under normal physiological conditions, AcMARCH5 showed the highest mRNA expression in the muscle, brain, and kidney tissues of A. clarkii. Upon stimulation with polyinosinic:polycytidylic acid (Poly I:C), lipopolysaccharide (LPS), and Vibrio harveyi , AcMARCH5 expression was drastically modulated. Functional assays showed that overexpression of AcMARCH5 in fathead minnow (FHM) cells downregulated antiviral gene expression, accompanied by enhanced viral hemorrhagic septicemia virus (VHSV) replication. In murine macrophages, AcMARCH5 overexpression markedly reduced the production of pro-inflammatory cytokines in response to poly I:C treatment. Additionally, AcMARCH5 exhibited an anti-apoptotic effect in H 2 O 2 -treated FHM cells. Collectively, these results suggest that AcMARCH5 may play a role in maintaining cellular homeostasis under disease and stress conditions in A. clarkii. • The membrane-associated Ring-CH5 (MARCH5) from Amphiprion clarkii (AcMARCH5) was identified and characterized. • Temporal expression of AcMARCH5 in blood, spleen and head kidney is drastically modulated by various immune stimuli. • AcMARCH5 overexpression suppressed antiviral gene expression and promoted VHSV viral replication. • AcMARCH5 overexpression reduced pro-inflammatory cytokine production in Poly I:C stimulated macrophages. • AcMARCH5 showed an anti-apoptotic property during H 2 O 2 induced oxidative stress. [ABSTRACT FROM AUTHOR]

Thioredoxin domain-containing protein 12 (TXNDC12) is a member of the thioredoxin-like superfamily that contributes to various thiol-dependent metabolic activities in all living organisms. In this research, the TXNDC12 gene from yellowtail clownfish (Amphiprion clarkii) was structurally characterized using in silico tools, assessed for immunological expression, and evaluated for biological activity using recombinant protein and cellular overexpression. The deduced coding sequence of AcTXNDC12 comprised a 522-bp nucleotide, encoding 173 amino acids with a predicted molecular mass of 19.198 kDa. The AcTXNDC12 protein consists of a66WCGAC70 active motif and a170GDEL173 signature. The highest tissue-specific expression of AcTXNDC12 was observed in the brain tissue, with significant modulation observed in the blood and gill tissues following stimulation of polyinosinic: polycytidylic acid, lipopolysaccharides (LPS), and Vibrio harveyi. In functional assays, recombinant AcTXNDC12 protein (rAcTXNDC12) showed insulin disulfide reduction activity, 2,2′-azino-di-(3-ethylbenzthiazoline sulfonic acid) decolorization antioxidant capacity, and ferric (Fe3+) reducing antioxidant potential. Additionally, a significant reduction in nitric oxide production was observed in AcTXNDC12-overexpressed RAW 264.7 cells upon LPS stimulation. Furthermore, genes associated with the regulation of oxidative stress, including nuclear factor erythroid 2-related factor 2 (Nrf2), catalase (Cat), peroxiredoxin 1 (Prx1), and ribonucleotide reductase catalytic subunit M1 (Rrm1) were significantly upregulated in fathead minnow cells overexpressing AcTXNDC12 in response to H 2 O 2 treatment. The scratch wound healing assay demonstrated tissue regeneration and cell proliferation ability upon AcTXNDC12 overexpression. Altogether, the current study elucidated the antioxidant activity, immunological importance, and wound-healing effect of the AcTXNDC12 gene in yellowtail clownfish, providing valuable insights for advancing the aquaculture of A. clarkii fish. • Molecular insight of thioredoxin domain-containing protein 12 from A. clarkii was investigated. • AcTXNDC12 was expressed ubiquitously in all the examined tissues. • Immunological upregulation of AcTXNDC12 was detected in blood and gill upon immunostimulants. • Recombinant AcTXNDC12 showed radical scavenging, thiol-disulfide, and metal cation reduction activity. • Overexpression of AcTXNDC12 enhanced cell viability, wound healing, and reduction of NO production. [ABSTRACT FROM AUTHOR]

Caveolin-1 (Cav-1), a major structural component of caveolae, is involved in various biological functions, such as endocytosis, cholesterol trafficking, transcytosis, signal transduction, and immunity. To date, three caveolin members have been identified in mammals: Cav-1 , Cav-2 , and Cav-3. In this study, we identified the Cav-1 sequence from Amphiprion clarkii (AcCav-1). The protein is 181 amino acids long, with a molecular weight of 20.73 kDa and a predicted isoelectric point of 5.48. The phylogenetic tree disclosed that AcCav-1 is closely related to teleost fish orthologs and clusters together with vertebrates. It shares the highest identity (99.4%) and similarity (100%) with Amphiprion ocellaris. Subcellular localization assays showed that Cav-1 expressed in the endoplasmic reticulum and cytoplasm. Further, AcCav-1 was ubiquitously expressed in all examined tissues, but most highly in the skin and the spleen. The up and downregulation of AcCav-1 was observed throughout the testing period after in-vivo immunostimulation with lipopolysaccharides (LPS), polyinosinic:polycytidylic acid (poly (I:C), and Vibrio harveyi (V. harveyi). The antiviral assay showed that AcCav-1 overexpression suppresses the replication of the viral hemorrhagic septicemia virus (VHSV) in Fathead minnow cells by activating antiviral genes. Further, LPS induced NO production and H 2 O 2 -mediated oxidative stress assays showed that AcCav-1 is involved in the regulation of oxidative stress. Collectively, these findings suggest the indispensable role of Cav-1 in the immune system of A.clarkii. [Display omitted] • The caveolin-1 gene was identified and cloned from Amphiprion clarkii. • AcCav-1 was ubiquitously expressed in all examined tissues. • The AcCav-1 mRNA expression was analyzed upon immune challenges. • The overexpressed AcCav-1 reduced the VHSV gene transcription while incresing antiviral gene transcription. • AcCav-1 was involved in the regulation of oxidative stress. [ABSTRACT FROM AUTHOR]

Thioredoxin-like protein 1 (TXNL1) is a redox-active protein belonging to the thioredoxin family, which mainly controls the redox status of cells. The TXNL1 gene from Amphiprion clarkii (AcTXNL1) was obtained from a pre-established transcriptome database. The AcTXNL1 is encoded with 289 amino acids and is predominantly localized in the cytoplasm and nucleus. The TXN domain of AcTXNL1 comprises a34CGPC37 motif with redox-reactive thiol (SH-) groups. The spatial distribution pattern of AcTXNL1 mRNA was examined in different tissues, and the muscle was identified as the highest expressed tissue. AcTXNL1 mRNA levels in the blood and gills were significantly increased in response to different immunostimulants. In vitro antioxidant capacity of the recombinant AcTXNL1 protein (rACTXNL1) was evaluated using the ABTS free radical-scavenging activity assay, cupric ion reducing antioxidant capacity assay, turbidimetric disulfide reduction assay, and DNA nicking protection assay. The potent antioxidant activity of rAcTXNL1 exhibited a concentration-dependent manner in all assays. Furthermore, in the cellular environment, overexpression of AcTXNL1 increased cell viability under H 2 O 2 stress and reduced nitric oxide (NO) production induced by lipopolysaccharides (LPS). Collectively, the experimental results revealed that AcTXNL1 is an antioxidant and immunologically important gene in A. clarkii. • TXNL1 from A. clarkii was molecularly and functionally characterized. • AcTXNL1 was ubiquitously expressed in all tissues and significantly inducible upon immunostimulants. • Recombinant AcTXNL1 showed potent antioxidant and DNA protection activities. • Overexpression of AcTXNL1 enhanced cell viability under oxidative stress and reduced NO production in macrophages. [ABSTRACT FROM AUTHOR]