72 results on '"Xueying, Zhang"'
Search Results
2. Evaluating the impact of multiple factors on the control of COVID-19 epidemic: A modelling analysis using India as a case study
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Aili Wang, Xueying Zhang, Rong Yan, Duo Bai, and Jingmin He
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Computational Mathematics ,Applied Mathematics ,Modeling and Simulation ,General Medicine ,General Agricultural and Biological Sciences - Abstract
The currently ongoing COVID-19 outbreak remains a global health concern. Understanding the transmission modes of COVID-19 can help develop more effective prevention and control strategies. In this study, we devise a two-strain nonlinear dynamical model with the purpose to shed light on the effect of multiple factors on the outbreak of the epidemic. Our targeted model incorporates the simultaneous transmission of the mutant strain and wild strain, environmental transmission and the implementation of vaccination, in the context of shortage of essential medical resources. By using the nonlinear least-square method, the model is validated based on the daily case data of the second COVID-19 wave in India, which has triggered a heavy load of confirmed cases. We present the formula for the effective reproduction number and give an estimate of it over the time. By conducting Latin Hyperbolic Sampling (LHS), evaluating the partial rank correlation coefficients (PRCCs) and other sensitivity analysis, we have found that increasing the transmission probability in contact with the mutant strain, the proportion of infecteds with mutant strain, the ratio of probability of the vaccinated individuals being infected, or the indirect transmission rate, all could aggravate the outbreak by raising the total number of deaths. We also found that increasing the recovery rate of those infecteds with mutant strain while decreasing their disease-induced death rate, or raising the vaccination rate, both could alleviate the outbreak by reducing the deaths. Our results demonstrate that reducing the prevalence of the mutant strain, improving the clearance of the virus in the environment, and strengthening the ability to treat infected individuals are critical to mitigate and control the spread of COVID-19, especially in the resource-constrained regions.
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- 2023
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3. Flavonoids in vegetables: improvement of dietary flavonoids by metabolic engineering to promote health
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Han Tao, Linying Li, Yuqing He, Xueying Zhang, Yao Zhao, Qiaomei Wang, and Gaojie Hong
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General Medicine ,Industrial and Manufacturing Engineering ,Food Science - Abstract
Flavonoids are the most abundant polyphenols in plants, and have antioxidant effects as well as other bioactivities (e.g., anti-inflammatory, anti-cancer, anti-allergic, and neuroprotective effects). Vegetables are rich in flavonoids and are indispensable in our daily diet. Moreover, the vegetables as chassis for producing natural products would emerge as a promising means for cost-effective and sustainable production of flavonoids. Understanding the metabolic engineering of flavonoids in vegetables allows us to improve their nutrient composition. In this review, a comprehensive overview of flavonoids in vegetables, including the characterized types and distribution, health-promoting effects, associated metabolic pathways, and applied metabolic engineering are provided. We also introduce breakthroughs in multi-omics approaches that pertain to the elucidation of flavonoids metabolism in vegetables, as well as prospective and potential genome-editing technologies. Based on the varied composition and content of flavonoids among vegetables, dietary suggestions are further provided for human health.
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- 2022
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4. Efficient electron transfer and copper species transformation under the synergy of BiVO4 and novel Cu2(OH)3F nanosheets
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Xueying Zhang, Yonggang Liu, Yonghao Yu, Lifen Wang, and Yinjun Lin
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Health, Toxicology and Mutagenesis ,Environmental Chemistry ,General Medicine ,Pollution - Published
- 2022
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5. Shewanella shenzhenensis sp. nov., a novel Fe(III)-reducing bacterium with abundant possible cytochrome genes, isolated from mangrove sediment
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Xueying, Zhang, Guiqin, Yang, Sijie, Yao, and Li, Zhuang
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DNA, Bacterial ,Base Composition ,Shewanella ,Nucleotides ,Fatty Acids ,Sequence Analysis, DNA ,General Medicine ,Sodium Chloride ,Catalase ,Ferric Compounds ,Microbiology ,Bacterial Typing Techniques ,RNA, Ribosomal, 16S ,Cytochromes ,Citrates ,Molecular Biology ,Phospholipids ,Phylogeny - Abstract
A facultative anaerobic bacterium, designated as A25
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- 2022
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6. Regulation of miR319b-Targeted SlTCP10 during the Tomato Response to Low-Potassium Stress
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Xin Liu, Lingling Pei, Lingling Zhang, Xueying Zhang, and Jing Jiang
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Inorganic Chemistry ,Organic Chemistry ,miR319b ,root growth ,low-potassium stress ,SlTCP10 ,SIJA2 ,tomato plant ,General Medicine ,Physical and Theoretical Chemistry ,Molecular Biology ,Spectroscopy ,Catalysis ,Computer Science Applications - Abstract
Potassium deficiency confines root growth and decreases root-to-shoot ratio, thereby limiting root K+ acquisition. This study aimed to identify the regulation network of microRNA319 involved in low-K+ stress tolerance in tomato (Solanum lycopersicum). SlmiR319b-OE roots demonstrated a smaller root system, a lower number of root hairs and lower K+ content under low-K+ stress. We identified SlTCP10 as the target of miR319b using a modified RLM-RACE procedure from some SlTCPs’ predictive complementarity to miR319b. Then, SlTCP10-regulated SlJA2 (an NAC transcription factor) influenced the response to low-K+ stress. CR-SlJA2 (CRISPR-Cas9-SlJA2) lines showed the same root phenotype to SlmiR319-OE compared with WT lines. OE-SlJA2(Overexpression-SlJA2) lines showed higher root biomass, root hair number and K+ concentration in the roots under low-K+ conditions. Furthermore, SlJA2 has been reported to promote abscisic acid (ABA) biosynthesis. Therefore, SlJA2 increases low-K+ tolerance via ABA. In conclusion, enlarging root growth and K+ absorption by the expression of SlmiR319b-regulated SlTCP10, mediating SlJA2 in roots, could provide a new regulation mechanism for increasing K+ acquisition efficiency under low-K+ stress.
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- 2023
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7. Multi-omics integrated circulating cell-free DNA genomic signatures enhanced the diagnostic performance of early-stage lung cancer and postoperative minimal residual disease
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Yun Li, Guanchao Jiang, Wendy Wu, Hao Yang, Yichen Jin, Manqi Wu, Wenjie Liu, Airong Yang, Olga Chervova, Sujie Zhang, Lu Zheng, Xueying Zhang, Fengxia Du, Nnennaya Kanu, Lin Wu, Fan Yang, Jun Wang, and Kezhong Chen
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General Medicine ,Articles ,General Biochemistry, Genetics and Molecular Biology - Abstract
BACKGROUND: Liquid biopsy is a promising non-invasive alternative for cancer screening and minimal residual disease (MRD) detection, although there are some concerns regarding its clinical applications. We aimed to develop an accurate detection platform based on liquid biopsy for both cancer screening and MRD detection in patients with lung cancer (LC), which is also applicable to clinical use. METHODS: We applied a modified whole-genome sequencing (WGS) -based High-performance Infrastructure For MultIomics (HIFI) method for LC screening and postoperative MRD detection by combining the hyper-co-methylated read approach and the circulating single-molecule amplification and resequencing technology (cSMART2.0). FINDINGS: For early screening of LC, the LC score model was constructed using the support vector machine, which showed sensitivity (51.8%) at high specificity (96.3%) and achieved an AUC of 0.912 in the validation set prospectively enrolled from multiple centers. The screening model achieved detection efficiency with an AUC of 0.906 in patients with lung adenocarcinoma and outperformed other clinical models in solid nodule cohort. When applied the HIFI model to real social population, a negative predictive value (NPV) of 99.92% was achieved in Chinese population. Additionally, the MRD detection rate improved significantly by combining results from WGS and cSMART2.0, with sensitivity of 73.7% at specificity of 97.3%. INTERPRETATION: In conclusion, the HIFI method is promising for diagnosis and postoperative monitoring of LC. FUNDING: This study was supported by CAMS Innovation Fund for Medical Sciences, 10.13039/501100005150Chinese Academy of Medical Sciences, 10.13039/501100001809National Natural Science Foundation of China, Beijing Natural Science Foundation and Peking University People's Hospital.
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- 2023
8. Enhanced aerobic granular sludge formation by applying Phanerochaete chrysosporium pellets as induced nucleus
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Yihua, Dong, Feng, Chen, Liang, Li, Zhiwen, Yin, and Xueying, Zhang
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Bioreactors ,Sewage ,Nitrogen ,Bioengineering ,General Medicine ,Phanerochaete ,Waste Disposal, Fluid ,Aerobiosis ,Biotechnology - Abstract
The long start-up period is a major challenging issue for the widespread application of aerobic granular sludge (AGS). In this study, a novel rapid start-up strategy was developed by inoculating Phanerochaete chrysosporium (P. chrysosporium) pellets as the induced nucleus in a sequencing batch airlift reactor (SBAR) to enhance activated sludge granulation. The results demonstrated that P. chrysosporium pellets could effectively shorten the aerobic granulation time from 32 to 20 days. The AGS promoted by P. chrysosporium pellets had a larger average diameter (2.60-2.74 mm) than that without P. chrysosporium pellets (1.78-1.88 mm) and had better biomass retention capacity and sedimentation properties; its mixed liquor suspended solids (MLSS) and sludge volume index (SVI
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- 2022
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9. Mangrovimonas futianensis sp. nov., a novel species isolated from mangrove sediment
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Sijie Yao, Guiqin Yang, Xueying Zhang, Canfen Lin, and Li Zhuang
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General Medicine ,Microbiology ,Ecology, Evolution, Behavior and Systematics - Abstract
Three bacterial strains, designated as AS18T, AS27 and AS39, were obtained from mangrove sediment sampled in Futian district, Shenzhen, PR China. Cells of these strains were Gram-negative rods with no flagella. They were able to grow at 10–42 °C (optimum, 37 °C), at pH 5–9 (optimum, pH 6) and in 1–11 % (w/v) NaCl (optimum, 2 %). Phylogenetic analysis based on 16S rRNA gene sequences indicated that the new isolates were clustered within the genus Mangrovimonas , closely related to Mangrovimonas yunxiaonensis (95.1 % similarity) and Mangrovimonas spongiae (94.7 % similarity). Phylogenomic analysis based on multiple core genes revealed that the three strains were located in a different cluster from other closely related strains of the genus Mangrovimonas . Digital DNA–DNA hybridization, average nucleotide identity and average amino acid identity values calculated from genome sequences between isolates and type strains were lower than 25, 75 and 72 %, respectively. The dominant fatty acids were iso-C15 : 0 and iso-C15 : 1 G. The main respiratory quinone was identified as MK-6. The major polar lipids contained phosphatidylethanolamine, two unidentified aminolipids and five unidentified lipids. The results of multiphase taxonomy suggested that the three strains should be assigned to a novel species of the genus Mangrovimonas , for which the name Mangrovimonas futianensis sp. nov. is proposed, with the type strain AS18T (=GDMCC 1.2739T=JCM 34871T).
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- 2022
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10. C/EBPα promotes triacylglycerol synthesis via regulating PPARG promoter activity in goat mammary epithelial cells
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Huibin Tian, Jun Luo, Peng Guo, Chun Li, and Xueying Zhang
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Genetics ,Animal Science and Zoology ,General Medicine ,Food Science - Abstract
CCAAT/enhancer binding protein α (C/EBPα) is the key transcription factor involved in lipid metabolism, however, the role of C/EBPα in milk fat synthesis of dairy goats remains unknown. The objective of the present research was to clarify the function of C/EBPα in goat mammary epithelial cells (GMECs) and its impact on peroxisome proliferator-activated receptor gamma (PPARG) promoter activity. In this study, C/EBPα overexpression increased its mRNA and protein levels by 42-fold and 6-fold, respectively. In contrast, transfecting siRNA targeting C/EBPα decreased its mRNA level to 20% and protein abundance to 80% of the basal level. The contents of lipid droplets, triacylglycerol (TAG), and cholesterol were increased (P < 0.05) in C/EBPα-overexpressing GMECs, and knockdown of C/EBPα led to the opposite results. Overexpression of C/EBPα significantly increased the expression levels of genes involved in TAG synthesis (AGPAT6, DGAT2, P < 0.01), lipid droplet formation (PLIN2, P < 0.01), and fatty acid synthesis (FADS2, P < 0.05; ELOVL6, P < 0.01). Knockdown of C/EBPα decreased (P < 0.05) the expression levels of AGPAT6, DGAT1, DGAT2, PLIN2, FADS2, and ELOVL6. C/EBPα upregulated the expression level of PPARG (P < 0.05), and four C/EBPα binding regions were identified in the PPARG promoter at −1,112 to −1,102 bp, −734 to −724 bp, −248 to −238 bp, and −119 to −109 bp. Knockdown of C/EBPα reduced (P < 0.05) the PPARG promoter activity when the C/EBPα binding regions were mutated at −1,112 to −1,102 bp, −734 to −724 bp, and −248 to −238 bp locations of the promoter. However, the promoter activity did not change when the mutation was located at −119 bp. In conclusion, our results suggest that C/EBPα can promote TAG synthesis in GMECs through its effects on mRNA abundance of genes related to lipid metabolism and regulation of the PPARG promoter activity via C/EBPα binding regions.
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- 2022
11. Characterization of fatty acid compositions in longissimus thoracis muscle and identification of candidate gene and SNPs related to polyunsaturated fatty acid in Hu sheep
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Yuanyuan Kong, Chongyang Liu, Xueying Zhang, Xing Liu, Wenqiao Li, Fadi Li, Xinji Wang, and Xiangpeng Yue
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Genetics ,Animal Science and Zoology ,General Medicine ,Food Science - Abstract
Fatty acid (FA) composition contributes greatly to the quality and nutritional value of lamb meat. In the present study, FA was measured in longissimus thoracis (LT) muscles of 1,085 Hu sheep using gas chromatography. Comparative transcriptomic analysis was conducted in LT muscles to identify differentially expressed genes (DEGs) between six individuals with high polyunsaturated fatty acids (H-PUFA, 15.27% ± 0.42%) and six with low PUFA (L-PUFA, 5.22% ± 0.25%). Subsequently, the single nucleotide polymorphisms (SNPs) in a candidate gene PLIN2 were correlated with FA traits. The results showed a total of 29 FA compositions and 8 FA groups were identified, with the highest content of monounsaturated fatty acids (MUFA, 46.54%, mainly C18:1n9c), followed by saturated fatty acids (SFA, 44.32%, mainly C16:0), and PUFA (8.72%, mainly C18:2n6c), and significant correlations were observed among the most of FA traits. Transcriptomic analyses identified 110 upregulated and 302 downregulated DEGs between H-PUFA and L-PUFA groups. The functional enrichment analysis revealed three significant Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways and 17 gene ontology (GO) terms, in which regulation of lipolysis in adipocytes, the AMPK signaling pathway, and the PPAR signaling pathway may play important roles in FA metabolism and biosynthesis. In addition, weighted gene co-expression network analysis (WGCNA) identified 37 module genes associated with PUFA-related traits. In general, PLIN1, LIPE, FABP4, LEP, ACACA, ADIPOQ, SCD, PCK2, FASN, PLIN2, LPL, FABP3, THRSP, and ACADVL may have a great impact on PUFA metabolism and lipid deposition. Four SNPs within PLIN2 were significantly associated with FA. Of those, SNP1 (g.287 G>A) was significantly associated with C18:1n9c and MUFA, and SNP4 (g.7807 T>C) was significantly correlated with PUFA (C18:3n3). In addition, the combined genotype of SNP1 (g.287 G>A), SNP3 (g.7664 T>C), and SNP4 (g.7807 T>C) were significantly correlated with C16:1, C17:0, C18:1C6, PUFA (C18:3n3, C22:6n3), and n-6/n-3 PUFA. These results contribute to the knowledge of the biological mechanisms and genetic markers involved in the composition of FA in Hu sheep.
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- 2022
12. Differential dose-response patterns of intracellular and extracellular antibiotic resistance genes under sub-lethal antibiotic exposure
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Lele Liu, Xinyi Zou, Yifan Gao, Huihui Li, Yuan Cheng, Xueying Zhang, and Qingbin Yuan
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Health, Toxicology and Mutagenesis ,Public Health, Environmental and Occupational Health ,General Medicine ,Pollution - Published
- 2023
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13. School dropouts related to mental disorders: A systematic review and meta-analysis
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Yingying Tong, Shaojie Wang, Leilei Cao, Dongxue Zhu, Fan Wang, Faliang Xie, Xueying Zhang, Gengfu Wang, and Puyu Su
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Psychiatry and Mental health ,General Medicine ,General Psychology - Published
- 2023
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14. SS-31 as a Mitochondrial Protectant in the Treatment of Tendinopathy: Evaluation in a Murine Supraspinatus Tendinopathy Model
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Xueying Zhang, Edward Bowen, Meng Zhang, Hazel H. Szeto, Xiang-Hua Deng, and Scott A. Rodeo
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Mice ,Rotator Cuff ,Shoulder Impingement Syndrome ,Superoxide Dismutase ,Tendinopathy ,Animals ,Orthopedics and Sports Medicine ,Surgery ,General Medicine ,Oligopeptides ,Mitochondria - Abstract
Prior studies have demonstrated mitochondrial dysfunction in tendinopathy. The objective of this investigation was to explore the potential of SS-31 (elamipretide), a mitochondrial protectant, to improve mitochondrial function and promote tendon healing in a murine supraspinatus tendinopathy model.One hundred and twenty-six mice (252 limbs) were divided into 6 groups (42 limbs/group) that received (I) 4 weeks of impingement; (II) 8 weeks of impingement; (III) 8 weeks of impingement including 4 weeks of SS-31 treatment (5 mg/kg/d) starting after 4 weeks of impingement; (IV) 4 weeks of impingement ending with clip removal, followed by harvesting 4 weeks later; and (V) 4 weeks of impingement ending with clip removal, followed by 4 weeks of SS-31 treatment and harvesting; and a control group. Specimens were prepared for biomechanical testing, histological analysis, transmission electron microscopy, measurement of superoxidative dismutase (SOD) activity, and measurement of gene expression.Failure force decreased after impingement, compared with the intact tendon, and the decrease was partially reversed after clip removal, SS-31 treatment, and the 2 treatments combined. A similar pattern was observed for stiffness. Histological analysis demonstrated higher modified Bonar scores in the impingement groups; however, the changes in tendon morphology were partially reversed following all treatments, especially the combined treatment. Decreased mitochondrial number and altered organization and density of cristae were observed in the impingement groups. Mitochondrial structure and number became more normal, with improvement in morphology of the cristae, after clip removal and/or SS-31 treatment. SOD activity decreased after impingement, compared with the control group, then increased significantly again after treatment, especially in the combined treatment group. Mitochondria-related gene expression decreased in the impingement groups and increased again after treatment.The mitochondrial protectant SS-31 improved mitochondrial function, promoting tendon healing, especially when combined with removal of subacromial impingement.Improving mitochondrial function with agents such as SS-31 may represent an effective treatment to promote healing in the setting of supraspinatus tendinopathy.
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- 2022
15. Effective degradation of chloramphenicol in wastewater by activated peroxymonosulfate with Fe-rich porous biochar derived from petrochemical sludge
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Lina Qian, Su Yan, Xiaoyu Yong, Manickam Selvaraj, Hamed A. Ghramh, Mohammed A. Assiri, Xueying Zhang, Mukesh Kumar Awasthi, and Jun Zhou
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Environmental Engineering ,Sewage ,Health, Toxicology and Mutagenesis ,Public Health, Environmental and Occupational Health ,General Medicine ,General Chemistry ,Wastewater ,Pollution ,Chloramphenicol ,Charcoal ,Environmental Chemistry ,Environmental Pollutants ,Porosity ,Water Pollutants, Chemical - Abstract
Excess sludge produced from biological wastewater treatment plant in petroleum industry is a kind of hazardous solid waste. Converting the sludge into biochar catalysts may help to reduce its environmental risk, recover resources and increase economic efficiency. However, the role of the sludge biochar in persulfate activation remains unclear, limiting its application in removing organic pollutants from water body. In this study, metal-rich petrochemical sludge was used to produce activated sludge biochar (ASC) via a two-step method of pyrolytic carbonization (400 °C-800 °C) and subsequent KOH activation (abbreviated as ASC 400-800). The physio-chemical properties of ASC 400-800 were characterized by Fourier transform infrared spectroscopy (FTIR), X-ray diffraction (XRD), Scanning electron microscopy (SEM), Brunauer-Emmett-Teller (BET) and Raman. The chloramphenicol (CAP) removal performances of ASC 400-800/peroxymonosulfate (PMS) systems were evaluated. Results showed that porous sludge biochar was successfully prepared by the two-step method. At 800 °C, the specific surface area of ASC reached the highest value of 202.92 m
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- 2022
16. Upregulation of LPGAT1 Enhances Lung Adenocarcinoma Proliferation
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Xiaojing Wang, Nan Wu, Ting Huang, Yannan Hu, Wei Wang, Pengfei Chen, Linxiang Zhang, Xueying Zhang, Xiaojun Li, Chao Ma, and Huiyuan Gong
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General Immunology and Microbiology ,General Medicine ,General Biochemistry, Genetics and Molecular Biology - Published
- 2023
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17. Sputum microbiota as a potential diagnostic marker for multidrug-resistant tuberculosis
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Chunyan Lei, Wei Wang, Xueying Zhang, Yumei Li, Xilin Zhang, Weiqing Yang, Juan Huang, Jincheng Zeng, Yanyun Li, Jie Zhou, Bingyao Lin, Xinguang Liu, Dongzi Lin, Yinwen Chen, Bihua Lin, Xuezhi Wang, and Xiaolin Yu
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Adult ,DNA, Bacterial ,Male ,Tuberculosis ,Adolescent ,Antitubercular Agents ,Microbial Sensitivity Tests ,Drug resistance ,medicine.disease_cause ,Sensitivity and Specificity ,Mycobacterium tuberculosis ,Young Adult ,RNA, Ribosomal, 16S ,Tuberculosis, Multidrug-Resistant ,Isoniazid ,Humans ,Medicine ,Leptotrichia ,Tuberculosis, Pulmonary ,Aged ,Chlamydophila ,drug resistance ,biology ,business.industry ,Microbiota ,Campylobacter ,Sputum ,General Medicine ,Middle Aged ,biology.organism_classification ,medicine.disease ,16S rRNA sequencing ,Multiple drug resistance ,Immunology ,sputum microbiota ,Female ,Rifampin ,medicine.symptom ,business ,Research Paper - Abstract
The prevalence of drug-resistant Mycobacterium tuberculosis (Mtb) strains makes disease control more complicated, which is the main cause of death in tuberculosis (TB) patients. Early detection and timely standard treatment are the key to current prevention and control of drug-resistant TB. In recent years, despite the continuous advancement in drug-resistant TB diagnostic technology, the needs for clinical rapid and accurate diagnosis are still not fully met. With the development of sequencing technology, the research of human microecology has been intensified. This study aims to use 16 rRNA sequencing technology to detect and analyze upper respiratory flora of TB patients with anti-TB drug sensitivity (DS, n = 55), monoresistance isoniazide (MR-INH, n = 33), monoresistance rifampin (MR-RFP, n = 12), multidrug resistance (MDR, n = 26) and polyresistance (PR, n = 39) in southern China. Potential microbial diagnostic markers for different types of TB drug resistance are searched by screening differential flora, which provides certain guiding significance for drug resistance diagnosis and clinical drug use of TB. The results showed that the pulmonary microenvironment of TB patients was more susceptible to infection by external pathogens, and the infection of different drug-resistant Mtb leads to changes in different flora. Importantly, seven novel microorganisms (Leptotrichia, Granulicatella, Campylobacter, Delfitia, Kingella, Chlamydophila, Bordetella) were identified by 16S rRNA sequencing as diagnostic markers for different drug resistance types of TB. Leptotrichia, Granulicatella, Campylobacter were potential diagnostic marker for TB patients with INH single-resistance. Delftia was a potential diagnostic marker for TB patients with RFP single drug-resistance. Kingella and Chlamydophila can be used as diagnostic markers for TB patients with PR. Bordetella can be used as a potential diagnostic marker for identification of TB patients with MDR.
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- 2021
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18. Neglected skin-associated microbial communities: a unique immune defense strategy of Bufo raddei under environmental heavy metal pollution
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Rui Su, Sheng Zhang, Xueying Zhang, Shengnan Wang, and Wenya Zhang
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Health, Toxicology and Mutagenesis ,Environmental Chemistry ,General Medicine ,Pollution - Abstract
Amphibians defend against pathogens using skin microbial communities, in addition to innate and adaptive immunity. Despite skin microbial communities play a key role in the immune function of amphibians, few studies have focused on the changes in its composition and function. In the present study, we identified the variation in adaptive immunity, as well as the corresponding changes in skin microbiome of Bufo raddei living in a heavy metal polluted area. The adaptive immunity of B. raddei in heavy metal polluted area was significantly lower than that in relatively unpolluted area. Further, different skin bacterial communities were found in the two areas. In the heavy metal polluted area, Actinobacteria and Microbacterium were the dominant bacteria in the skin microbiome of B. raddei, which showed broad-spectrum antibacterial activity. Besides, the antibiotic synthesis was also increased in metabolic pathways. The present study suggested that the adaptive immunity of B. raddei was weakened under long-term heavy metal stress. However, the toads increased the abundance of bacteriostatic bacteria by regulating the composition of skin microbiome, which released a large number of bacteriostatic metabolites and enhanced the host resistance to external pathogens in turn.
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- 2022
19. Relationship between Long Noncoding RNA H19 Polymorphisms and Risk of Coronary Artery Disease in a Chinese Population: A Case-Control Study
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Han-xi Ding, Qian Xu, Xueying Zhang, Weina Hu, Yuanzhe Jin, and Da-Tong Yang
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Male ,Oncology ,Medicine (General) ,medicine.medical_specialty ,Alcohol Drinking ,Clinical Biochemistry ,Coronary Artery Disease ,Lower risk ,Polymorphism, Single Nucleotide ,Severity of Illness Index ,R5-920 ,Asian People ,Risk Factors ,Polymorphism (computer science) ,Internal medicine ,Genetic model ,Odds Ratio ,Genetics ,medicine ,Humans ,Genetic Predisposition to Disease ,Molecular Biology ,Aged ,Multifactor dimensionality reduction ,business.industry ,Smoking ,Biochemistry (medical) ,Haplotype ,Case-control study ,General Medicine ,Odds ratio ,Middle Aged ,Confidence interval ,Gene Expression Regulation ,Haplotypes ,Case-Control Studies ,Female ,RNA, Long Noncoding ,business ,Biomarkers ,Research Article - Abstract
Background/Aim. Coronary artery disease (CAD) is a major health problem that has high morbidity and mortality around the world. In recent years, long noncoding RNA H19 has been reported to affect the proliferation and apoptosis of vascular cells, which directly or indirectly results in atherosclerosis. We performed a case-control study to explore the relationship between H19 gene polymorphisms (rs2735971, rs2839698, and rs3024270) and the risk of CAD. Methods. We collected 732 samples from Liaoning Province, China, and three polymorphisms in long noncoding RNA H19 were genotyped using the KASP platform. Results. Our data showed that H19 rs2735971 and rs3024270 variant genotypes were associated with a decreased risk of CAD (rs2735971, P=0.003, odds ratio OR=0.6195, 95% confidence interval=0.44−0.84; rs3024270, P=0.030, OR=0.65, 95% confidence interval=0.44−0.96). No significant association with the risk of CAD was found for H19 rs2839698 polymorphism (P>0.05). In haplotype analysis, H19 polymorphisms of rs2735971-rs2839698-rs3024270 A-C-C haplotype reduced the risk of CAD by 0.61-fold (P=0.004, OR=0.61, 95% confidence interval=0.43–0.86). In addition, we found that rs2839698 interacted with smoking (Pinteraction=0.027), and according to multifactor dimensionality reduction analysis, the three-factor model including H19 rs2839698-smoking-drinking was the best model for the risk of CAD (testing balanced accuracy=0.6979). Conclusion. Our study demonstrated that some genotypes of H19 rs2735971 and rs3024270 polymorphisms, as well as rs2735971-rs2839698-rs3024270 A-C-C haplotype, were associated with the risk of CAD in a Chinese population, and these genotypes have the potential to be biomarkers for predicting CAD risk. We also found that rs2735971-rs2839698-rs3024270 A-C-C may have a significantly lower risk of CAD. The recessive genetic model of rs3024270 could predict the severity of CAD.
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- 2020
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20. Genome-wide analysis of PYL-PP2C-SnRK2s family in Camellia sinensis
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Yuefei Wang, Ping Xu, Gaojie Hong, Hui Su, Xiaofen Liu, and Xueying Zhang
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0106 biological sciences ,0301 basic medicine ,snrk2 ,Gene regulatory network ,Bioengineering ,gene regulatory network ,Protein Serine-Threonine Kinases ,Biology ,01 natural sciences ,Applied Microbiology and Biotechnology ,Transcriptome ,abscisic acid ,03 medical and health sciences ,chemistry.chemical_compound ,Gene Expression Regulation, Plant ,Gene family ,Camellia sinensis ,Protein kinase A ,Abscisic acid ,Plant Proteins ,pyls ,Pyrabactin ,Genetics ,camellia sinensis ,fungi ,food and beverages ,General Medicine ,Protein Phosphatase 2C ,Metabolic pathway ,030104 developmental biology ,chemistry ,Multigene Family ,pp2cs ,Genome, Plant ,TP248.13-248.65 ,Research Paper ,010606 plant biology & botany ,Biotechnology - Abstract
Abscisic acid (ABA) signaling regulates plant growth and development and participates in response to abiotic stressors. However, details about the PYL-PP2C-SnRK2 gene family, which is the core component of ABA signaling in Camellia sinensis, are unknown. In this work, we identified 14 pyrabactin resistance-likes (PYLs), 84 type 2C protein phosphatase (PP2Cs), and 8 SNF1-related protein kinase 2s (SnRK2s) from C. sinensis. The transcriptomic analysis indicated that PYL-PP2C-SnRK2s were associated with changes of leaf color and the response of C. sinensis to drought and salt stressors. Changes of the expression of Snrk2s were not significant in the process of leaf color change or drought and salt stress response, suggesting that PYLs and PP2Cs may not interact with SnRK2s in C. sinensis during these processes. Finally, Gene Regulatory Network (GRN) construction and interaction networks analysis demonstrated that PYLs and PP2Cs were associated with multiple metabolic pathways during the changes of leaf color., Graphical Abstract
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- 2020
21. Tilapia head glycolipids reduce inflammation by regulating the gut microbiota in dextran sulphate sodium-induced colitis mice
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Zhipeng Gu, Xuanri Shen, Guanghua Xia, Shuaiming Jiang, Chuan Li, Jiachao Zhang, Xueying Zhang, and Yujie Zhu
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Male ,0301 basic medicine ,Colon ,Gut flora ,digestive system ,Inflammatory bowel disease ,law.invention ,Microbiology ,Proinflammatory cytokine ,Feces ,Mice ,03 medical and health sciences ,Probiotic ,0302 clinical medicine ,law ,Sulfasalazine ,medicine ,Animals ,Intestinal Mucosa ,Colitis ,Bifidobacterium ,Bacteria ,biology ,Chemistry ,Probiotics ,Dextran Sulfate ,Akkermansia ,General Medicine ,Inflammatory Bowel Diseases ,medicine.disease ,biology.organism_classification ,Gastrointestinal Microbiome ,Mice, Inbred C57BL ,Disease Models, Animal ,stomatognathic diseases ,030104 developmental biology ,030220 oncology & carcinogenesis ,Cytokines ,Glycolipids ,Head ,Tilapia ,Food Science ,medicine.drug - Abstract
In this study, we evaluated the effects of tilapia head glycolipids (TH-GLs) on male C57BL/6 mice with inflammatory bowel disease (IBD) induced by dextran sulfate sodium (DSS) and the changes in gut microbiota compared with sulfasalazine. Mice were orally treated with 3% (w/v) DSS or not for 7 days, followed by drug treatment with TH-GLs or sulfasalazine. After treatment, macroscopic colitis symptoms, intestinal epithelial barrier function, inflammatory cytokines, and gut microbiota homeostasis were assessed. Further studies showed that TH-GLs and sulfasalazine showed different influences on the gut microbiota structure. Both sulfasalazine and TH-GLs decreased the DSS-induced enrichment of Gammaproteobacteria and Enterobacteriaceae. However, TH-GLs had a selective increase in the enrichment of Akkermansia, Prevotellaceae, Oscillospira, Allobaculum, Bifidobacterium, and Coprococcus in contrast to sulfasalazine, which selectively increased the enrichment of Dorea, Turicibacter, Bacteroides, Coprobacillus, Mucispirillum, and Dehalobacterium. In addition, both TH-GLs and sulfasalazine relieved body weight loss, and increased the immune organ index, while maintaining the balance between pro-inflammatory and anti-inflammatory cytokines. The results indicate that TH-GLs alleviate DSS-induced IBD in mice by decreasing the abundance of harmful gut microbiota and enhancing the abundance of probiotic gut microbiota. Thus, the mechanism through which TH-GLs inhibit inflammation through gut microbiota is different from that of sulfasalazine. Therefore, TH-GLs stand as potential prebiotics for the treatment of colonic inflammation and related diseases.
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- 2020
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22. Why breast cancer patients avoid communicating disease-related information to their dependent children: A qualitative study
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Xueying Zhang, Ni Gong, Na Li, Yiheng Zhang, Qianqian Du, Wenjie Zou, Jing Chen, Junyi Zheng, and Meifen Zhang
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General Medicine ,General Nursing - Abstract
This qualitative study explores why breast cancer patients do not share disease-related information with their dependent children.'Open' communication between breast cancer patients and their children is beneficial to both. However, some still try to avoid discussing their diagnosis and related information with their children. Some worries lie in communicating with dependent children, but the underlying cause remains unclear.Qualitative descriptive study.Semi-structured interview was used in this study. Twenty breast cancer patients with children (aged 8-18 years) were recruited at two urban tertiary hospitals in mainland China. Qualitative content analysis was conducted to analyse and identify themes and subthemes. This study followed the COREQ checklist for qualitative studies.Three main themes were identified: (1) Uncertainty about the future: Their struggles with cancer remain a sensitive subject with their children. They described the uncertainty surrounding their disease prognosis and their children's response. They were also unsure whether, when and how to inform their children of their conditions; (2) Useless and risky for their children to know the truth: They considered it useless because their children can neither understand nor change the existing facts. They were concerned that it could affect their children's emotional state, character and academic performance; and (3) All for their children's sake: They were willing to take care of their affairs without troubling their dependent children as much as possible.Most mothers delayed communicating disease-related information to their dependent children. However, they often underestimated children's abilities and ignored their thoughts and wishes. Motherhood leads to avoidance and concealment in discussing health issues with their children.Mothers should try to understand their children's views towards cancer earlier. Healthcare professionals, especially nurses, should provide further consultation and intervention services to assist mothers and their children.
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- 2022
23. Large-leaf yellow tea attenuates high glucose-induced vascular endothelial cell injury by up-regulating autophagy and down-regulating oxidative stress
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Pu Wang, Yihai Huang, Jiayue Ren, Yuezhao Rong, Lili Fan, Peng Zhang, Xueying Zhang, Junxiao Xi, Shuying Mao, Min Su, Baobao Zhang, Guanhu Bao, and Feihua Wu
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Tea ,Down-Regulation ,General Medicine ,Up-Regulation ,Mice ,Oxidative Stress ,Glucose ,Autophagy ,Human Umbilical Vein Endothelial Cells ,Animals ,Humans ,Endothelium, Vascular ,Plant Preparations ,Cells, Cultured ,Food Science - Abstract
Vascular endothelial cell injury induced by high glucose (HG) plays an important role in the occurrence and development of diabetic vascular complications. Yellow tea has a protective effect on vascular endothelial cells. However, the molecular mechanisms underlying this effect are unclear. In this study, the effects of the
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- 2022
24. An ozone catalytic oxidation system for the degradation of organic compounds in secondary wastewater from refining and chemical processes
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Jun Ma, Dan Li, Xiaoyu Yong, Xueying Zhang, Su Yan, Jiayang Liu, and Jun Zhou
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Environmental Chemistry ,General Medicine ,Waste Management and Disposal ,Water Science and Technology - Abstract
To overcome the low catalytic efficiency, insufficient catalyst strength, and poor ozone circulation in the advanced treatment of secondary wastewater, a hollow cylindrical Fe-Cu-Ce-Mn/Al2O3 catalyst was prepared by the step impregnation method. Compared with the common impregnation method, the step impregnation method produced a more uniform and compact distribution of each metal element, which was more conducive to generating the synergistic effect of various metals; thus, increasing the mineralization rate of organic matter. The hollow cylindrical design ensured the strength of the catalyst and the circulation of ozone. The reduction of the chemical oxygen demand (COD) was compared under different experimental conditions, with the optimal conditions found to be an ozone contact time of 40 min and ozone dosage of 40 mg/L. The average COD, ammonia nitrogen, and ultraviolet absorbance at 254 nm (UV254) removal rates were 36%, 19%, and 20%, respectively. After 3 weeks of continuous experiment, the removal rate was still high. Following analysis by three dimensional fluorescence, GC-MS, and the molecular weight detection of water samples before and after treatment, it was found that the catalyst enhanced the effect of ozone on wastewater treatment, with a significant removal of tryptophan-like aromatic proteins and soluble microbial metabolites, and the removal of most of the small molecular organic matter. In addition, part of the refractory organic matter could be converted into easily degradable organic matter, which greatly improved the biodegradability and mineralization rate of wastewater, and provided good conditions for subsequent treatment.
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- 2022
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25. Metabolic Composition and Quality Traits of Polygonatum cyrtonema Hua from Different Germplasms and Age Sections Based on Widely Targeted Metabolomics Analysis
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Qingshuang Wang, Jingjie Ban, Roudi Cai, Xueying Zhang, Chunwang Lai, Yan Chen, Xiaoli Li, Cuirong Chen, Yukun Chen, Zihao Zhang, Zhongxiong Lai, and Yuling Lin
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Inorganic Chemistry ,Organic Chemistry ,Polygonatum cyrtonema Hua ,germplasm ,age section ,widely targeted metabolite ,differential metabolites ,General Medicine ,Physical and Theoretical Chemistry ,Molecular Biology ,Spectroscopy ,Catalysis ,Computer Science Applications - Abstract
Polygonatum rhizomes are rich in various compounds with many biological activities and are widely used in functional foods and pharmaceutical products. In order to screen for superior Polygonatum cyrtonema Hua (P.cyrtonema) germplasm and also to elucidate the nutritional and medicinal values of rhizomes, the metabolic composition and quality traits of rhizomes from different germplasms and age sections of P.cyrtonema were analysed by widely targeted metabolomics, and the molecular mechanism of triacylglycerol synthesis was explored. The results showed that the different germplasms and age sections of P.cyrtonema were rich in different nutritional and medicinal components. Of these, the broad-leaved green stem (GK) germplasm is rich in polysaccharides, alkaloids, and lipids; the pointed-leaved green stem (JL) germplasm is rich in flavonoids, steroids, and amino acids, while the pointed-leaved purple stem (JZ) germplasm contains more phenolic acids. The one-year (AT) age section is rich in polysaccharides, steroids, organic acids, and lipids; the three years (CT) age section contains more flavonoids, alkaloids, and amino acid metabolites. Lipids were significantly enriched in the broad-leaved green stem germplasm and the one-year age section. Interestingly, the highest accumulation of triacylglycerols, an important component of lipids, was also found in the GK germplasm and the AT age section. Nineteen, 14, and 13 members of the glycerol-3-phosphate acyltransferase (GPAT), lysophosphatidic acid acyltransferase (LPAT), and diacylglycerol acyltransferase (DGAT) gene families, respectively, involved in triacylglycerol synthesis were also identified. The quantitative real-time PCR (qRT-PCR) results further suggested that the differentially expressed PcDGAT1, PcDGAT2.4, PcGPAT9.1, PcLPAT2.9, and PcLPAT4.3 genes may play important roles in triacylglycerol synthesis in P.cyrtonema. Therefore, this study provides a new theoretical reference for product development and the breeding of new varieties of Polygonatum species.
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- 2023
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26. Effects of hydrochar and biogas slurry reflux on methane production by mixed anaerobic digestion of cow manure and corn straw
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Ye, Yang, Mengyao, Wang, Su, Yan, Xiaoyu, Yong, Xueying, Zhang, Mukesh Kumar, Awasthi, Yonglan, Xi, and Jun, Zhou
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Environmental Engineering ,Health, Toxicology and Mutagenesis ,Public Health, Environmental and Occupational Health ,General Medicine ,General Chemistry ,Zea mays ,Pollution ,Manure ,Bioreactors ,Biofuels ,Animals ,Environmental Chemistry ,Female ,Cattle ,Anaerobiosis ,Methane - Abstract
This study aimed to enhance methane production from mixed anaerobic digestion of cow manure and corn straw by adding hydrochar and biogas slurry reflux. The hydrochar characterization revealed that it can provide attachment for microbial growth, and abundant surface functional groups (such as C-O, CO, C-OH, and C-N) for adsorption. Direct interspecies electron transfer (DIET) mediated by surface oxygen-containing functional groups on hydrochar increased the methane yield. The experimental group added with hydrochar and biogas slurry reflux had the highest methane and biogas production (34.40% and 36.98% higher than the control group, respectively). Results demonstrate hydrochar and biogas slurry reflux can improve microorganism species richness in anaerobic digestion systems, in which hydrochar can also improve microorganism species uniformity. Distance-based redundancy analysis showed that the VFAs, and pH had the greatest effects on the composition of the microbial community. The dominant microorganism at the phylum level in AD system were Bacteroidetes, Firmicutes, and Proteobacteria. The addition of hydrochar and biogas slurry reflux can significantly increase the species abundance of Methanobacterium. These results indicate that the addition of hydrochar and biogas slurry reflux can improve the corresponding microbial abundance, in which hydrochar can enhance the redox characteristics and DIET between microorganism, biogas slurry reflux can also increase nutrient content of anaerobic digestion system, and collectively promote the methane yield.
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- 2023
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27. Microbial transformation of betulonic acid by Circinella muscae CGMCC 3.2695 and anti-neuroinflammatory activity of the products
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Youjia Lu, Yifei Tang, Yanni Wu, Xueying Zhang, Ying Yi, Wenli Wang, Andong Wang, Min Yang, Boyi Fan, and Guangtong Chen
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Plant Science ,General Medicine ,Horticulture ,Molecular Biology ,Biochemistry - Abstract
Microbial transformation of betulonic acid with Circinella muscae CGMCC 3.2695 yielded nine undescribed metabolites and eight known compounds. The structures of the metabolites were established based on extensive NMR and HR-ESI-MS data analyses. It is shown that C. muscae could catalyze the regioselective hydroxylation at C-2, C-7, C-15, C-16, C-21, and C-30 along with carbonylation at C-2 and C-21. Furthermore, potential anti-neuroinflammatory activities of the obtained compounds in NO production were tested in lipopolysaccharides-induced BV-2 cells. Some of the metabolites exhibited pronounced inhibitory activities with IC
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- 2022
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28. Whole Genome Analysis of SLs Pathway Genes and Functional Characterization of DlSMXL6 in Longan Early Somatic Embryo Development
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Xueying Zhang, Chunwang Lai, Mengyu Liu, Xiaodong Xue, Shuting Zhang, Yan Chen, Xuechen Xiao, Zihao Zhang, Yukun Chen, Zhongxiong Lai, and Yuling Lin
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Inorganic Chemistry ,Organic Chemistry ,Dimocarpus longan ,SLs ,early somatic embryogenesis ,DlSMXL6 ,General Medicine ,Physical and Theoretical Chemistry ,Molecular Biology ,Spectroscopy ,Catalysis ,Computer Science Applications - Abstract
Strigolactones (SLs), a new class of plant hormones, are implicated in the regulation of various biological processes. However, the related family members and functions are not identified in longan (Dimocarpus longan Lour.). In this study, 23 genes in the CCD, D27, and SMXL family were identified in the longan genome. The phylogenetic relationships, gene structure, conserved motifs, promoter elements, and transcription factor-binding site predictions were comprehensively analysed. The expression profiles indicated that these genes may play important roles in longan organ development and abiotic stress responses, especially during early somatic embryogenesis (SE). Furthermore, GR24 (synthetic SL analogue) and Tis108 (SL biosynthesis inhibitor) could affect longan early SE by regulating the levels of endogenous IAA (indole-3-acetic acid), JA (jasmonic acid), GA (gibberellin), and ABA (abscisic acid). Overexpression of SMXL6 resulted in inhibition of longan SE by regulating the synthesis of SLs, carotenoids, and IAA levels. This study establishes a foundation for further investigation of SL genes and provides novel insights into their biological functions.
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- 2022
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29. Seasonal expression of extracellular signal regulated kinases in the colon of wild ground squirrels (Spermophilus dauricus)
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Yixin Chen, Xiaoying Yang, Haolin Zhang, Zhengrong Yuan, Yue Song, Jueyu Zhu, Fuli Gao, Yingying Han, Xueying Zhang, and Qiang Weng
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biology ,Colon ,Extracellular signal-regulated kinases ,Sciuridae ,General Medicine ,biology.organism_classification ,Spermophilus dauricus ,Immunohistochemistry ,Cell biology ,Genetics ,Animals ,sense organs ,Seasons ,Extracellular Signal-Regulated MAP Kinases ,Molecular Biology - Abstract
Background: The aim of this study was to explore the localization and expression of extracellular signal regulated kinase/phospho-extracellular signal regulated kinases (ERK/pERK) in the colonic tissue of wild ground squirrels (Spermophilus dauricus) in the breeding season and the non-breeding season. Methods and Results: Hematoxylin-eosin staining, immunohistochemistry, real-time quantitative PCR and Western blot were used in this study. The histological results showed that the diameter of the colon lumen in the non-breeding season was larger than that in the breeding season, and the number of glandular cells in the non-breeding season was also more than those in the breeding season. The immunochemical results showed that ERK1/2 was expressed in the cytoplasm of goblet cells and intestinal epithelial cells, while pERK1/2 was expressed in the cytoplasm and nucleus of goblet cells and intestinal epithelial cells. The immunolocalization of ERK1/2 and pERK1/2 expression were more obvious in the non-breeding season, especially in intestinal epithelial cells. The results of real-time quantitative PCR and Western blot showed that the expression of ERK1/2 and pERK1/2 in the breeding season was significantly lower than that in the non-breeding season.Conclusions: The expression of ERK1/2 and pERK1/2 in the colons of the wild ground squirrels had seasonal changes, which had significant increases in the non-breeding season comparing to those in the breeding season. This study revealed the potential role of ERK1/2 in colon to the adaptation of seasonal changes in wild ground squirrel.
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- 2021
30. AtHB2, a class II HD‐ZIP protein, negatively regulates the expression ofCsANS, which encodes a key enzyme in<scp>Camellia sinensis</scp>catechin biosynthesis
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Xueying Zhang, Junmin Li, Tao Xia, Jiming Xu, Gaojie Hong, Xiaolan Jiang, Linying Li, Ping Xu, Zongtao Sun, and Yuqing He
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0106 biological sciences ,0301 basic medicine ,Physiology ,Arabidopsis ,Plant Science ,01 natural sciences ,Camellia sinensis ,Catechin ,03 medical and health sciences ,Bimolecular fluorescence complementation ,Gene Expression Regulation, Plant ,Transcription (biology) ,Genetics ,MYB ,Gene ,Transcription factor ,Plant Proteins ,Flavonoids ,Regulation of gene expression ,biology ,Arabidopsis Proteins ,Chemistry ,fungi ,food and beverages ,Cell Biology ,General Medicine ,biology.organism_classification ,030104 developmental biology ,Flavonoid biosynthesis ,Biochemistry ,Transcription Factors ,010606 plant biology & botany - Abstract
Tea (Camellia sinensis) is an important cash crop that is beneficial to human health because of its remarkable content of catechins. The biosynthesis of catechins follows the flavonoid pathway, which is highly branched. Among the enzymes involved in catechin biosynthesis, ANTHOCYANIDIN SYNTHASE (CsANS) functions at a branch point and play a critical role. Our previous work has showed that the gene encoding CsANS is regulated by light signals; however, the molecular mechanism behind remains unclear. Here, we cloned a full-length CsANS promoter and found that it contained a cis-element recognized by Arabidopsis thaliana HOMEOBOX2 (AtHB2). AtHB2 constitutes one of the class II HOMEODOMAIN-LEUCINE ZIPPER (HD-ZIP) proteins, which accumulate in the dark and mediate the shade avoidance response in most angiosperms. To analyze the transcription of CsANS in vivo, β-glucuronidase and luciferase reporter genes driven by the obtained promoter were introduced into A. thaliana and Nicotiana attenuata, respectively. In both expression systems there were indications that the A. thaliana PRODUCTION OF ANTHOCYANIN PIGMENT1 (AtPAP1), a MYB transcription factor of flavonoid biosynthesis, increased the activity of the CsANS promoter, while AtHB2 could significantly undermine the effect of AtPAP1. Yeast two-hybrid and bimolecular fluorescence complementation assays showed that AtHB2 interacted with the A. thaliana TRANSPARENT TESTA GLABRA 1 (AtTTG1). A yeast three-hybrid assay further suggested that AtHB2 represses the expression of CsANS and regulates its response to light signals through competitive interactions with AtTTG1. These results show that HD-ZIP II proteins participate in light regulation of flavonoid biosynthesis.
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- 2019
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31. Seasonal to sub-seasonal variations of the Asian Tropopause Aerosols Layer affected by the deep convection, surface pollutants and precipitation
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Dongyou Wu, Tenglong Shi, Xiaoying Niu, Ziqi Chen, Jiecan Cui, Yang Chen, Xueying Zhang, Jun Liu, Mingxia Ji, Xin Wang, and Wei Pu
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Aerosols ,Air Pollutants ,Environmental Engineering ,Environmental Chemistry ,Environmental Pollutants ,General Medicine ,Seasons ,Convection ,Carbon ,General Environmental Science ,Environmental Monitoring - Abstract
The Asian Tropopause Aerosols Layer (ATAL) refers to an accumulation of aerosols in the upper troposphere and lower stratosphere during boreal summer over Asia, which has a fundamental impact on the monsoon system and climate change. In this study, we primarily analyze the seasonal to sub-seasonal variations of the ATAL and the factors potentially influencing those variations based on MERRA2 reanalysis. The ability of the reanalysis to reproduce the ATAL is well validated by CALIPSO observations from May to October 2016. The results reveal that the ATAL has a synchronous spatiotemporal pattern with the development and movement of the Asian Summer Monsoon. Significant enhancement of ATAL intensity is found during the prevailing monsoon period of July-August, with two maxima centered over South Asia and the Arabian Peninsula. Owing to the fluctuations of deep convection, the ATAL shows an episodic variation on a timescale of 7-12 days. Attribution analysis indicates that deep convection dominates the variability of the ATAL with a contribution of 62.7%, followed by a contribution of 36.6% from surface pollutants. The impact of precipitation is limited. The ATAL further shows a clear diurnal variation: the peak of ATAL intensity occurs from 17:30 to 23:30 local time (LT), when the deep convection becomes strongest; the minimum ATAL intensity occurs around 8:30 LT owing to the weakened deep convection and photochemical reactions in clouds. The aerosol components of the ATAL show different spatiotemporal patterns and imply that black carbon and organic carbon come mainly from India, whereas sulfate comes mainly from China during the prevailing monsoon period.
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- 2021
32. Beta-1 syntrophin (SNTB1) regulates colorectal cancer progression and stemness via regulation of the Wnt/β-catenin signaling pathway
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Xueqin Huang, Xueying Zhang, Huang Weijuan, Xin Zhang, Xingxing Chai, Shasha Chen, Xianxiu Qiu, Jiachun Lian, Ronggang Li, Gang Kong, Yanfang Liang, Xiaoping Li, Zhengping Che, Yanyun Li, Bihua Lin, Ziyu Ye, Bin Wang, Jincheng Zeng, and Qi Xie
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Scaffold protein ,Colorectal cancer ,Cancer ,General Medicine ,Biology ,medicine.disease ,medicine.disease_cause ,Side population ,Cancer cell ,Cancer research ,medicine ,Gene silencing ,Original Article ,Signal transduction ,Carcinogenesis - Abstract
Background Beta-1 syntrophin (SNTB1) is an intracellular scaffold protein that provides a platform for the formation of signal transduction complexes, thereby modulating and coordinating various intracellular signaling events and crucial cellular processes. However, the physiological role of SNTB1 is poorly understood. This study aims to explore the role of SNTB1 in colorectal cancer (CRC) tumorigenesis and progression, with particular focus on SNTB1's expression pattern, clinical relevance, and possible molecular mechanism in CRC development. Methods SNTB1 expression was analyzed in both clinical tissues and The Cancer Genome Atlas (TCGA) database. Real-time polymerase chain reaction (PCR), Western blot, and immunohistochemical assays were used to detect the relative mRNA and protein levels of SNTB1. Statistical analysis was performed to examine the correlation between SNTB1 expression and the clinicopathological characteristics of patients with CRC. Bioinformatics gene set enrichment analysis (GSEA), Western blot, luciferase assay, and agonist recovery assays were conducted to evaluate the relevance of SNTB1 and the β-catenin signaling pathway in CRC. A flow cytometry-based Hoechst 33342 efflux assay was applied to assess the proportion of the side population (SP) within total CRC cells. Results Elevated levels of SNTB1 were identified in CRC tissues and cell lines. The elevation of SNTB1 was positively correlated with the degree of malignancy and poor prognosis in CRC. We further revealed that, by modulating the β-catenin signaling pathway, silencing SNTB1 expression suppressed tumor growth and cancer stemness in vitro, as well as tumorigenesis in vivo. Conclusions These findings suggest that SNTB1 plays a crucial role in colorectal tumorigenesis and progression by modulating β-catenin signaling and the stemness maintenance of cancer cells.
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- 2021
33. Lactobacillus paracasei R3 protects against dextran sulfate sodium (DSS)-induced colitis in mice via regulating Th17/Treg cell balance
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Zhao Zhang, Shaobing Zhang, Xingxing Chai, Yanyun Li, Hailiang Zhang, Tao Chen, Bihua Lin, Ziyu Ye, Zhengping Che, Jincheng Zeng, Weiqing Yang, Xueying Zhang, Yang Ziyan, Juan Huang, and Yanfang Liang
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Lactobacillus paracasei ,Colon ,Cell ,Stimulation ,T-Lymphocytes, Regulatory ,General Biochemistry, Genetics and Molecular Biology ,Mice ,Immune system ,Medicine ,Animals ,Colitis ,Barrier function ,biology ,business.industry ,Research ,Dextran Sulfate ,Biofilm ,General Medicine ,Lacticaseibacillus paracasei ,medicine.disease ,biology.organism_classification ,Ulcerative colitis ,Dextran sulfate sodium ,Mice, Inbred C57BL ,Treg ,Disease Models, Animal ,medicine.anatomical_structure ,Whole genome sequencing ,Immunology ,Th17 Cells ,Th17 ,business - Abstract
Inflammatory bowel diseases (IBD), mainly comprising ulcerative colitis (UC) and Crohn's Disease, are most often a polygenic disorder with contributions from the intestinal microbiome, defects in barrier function, and dysregulated host responses to microbial stimulation. Strategies that target the microbiota have emerged as potential therapies and, of these, probiotics have gained the greatest attention. Herein, we isolated a strain of Lactobacillus paracasei R3 (L.p R3) with strong biofilm formation ability from infant feces. Interestingly, we also found L.p R3 strain can ameliorate the general symptoms of murine colitis, alleviate inflammatory cell infiltration and inhibit Th17 while promote Treg function in murine dextran sulfate sodium (DSS)-induced colitis. Overall, this study suggested that L.p R3 strain significantly improves the symptoms and the pathological damage of mice with colitis and influences the immune function by regulating Th17/Treg cell balance in DSS-induced colitis in mice.
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- 2021
34. In Vivo Imaging of Fibroblast Activity Using a 68Ga-Labeled Fibroblast Activation Protein Alpha (FAP-α) Inhibitor: Study in a Mouse Rotator Cuff Repair Model
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Daoyun Chen, Samuel J. E. Green, Scott A. Rodeo, Xueying Zhang, John W. Babich, and Xiang-Hua Deng
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0301 basic medicine ,Pathology ,medicine.medical_specialty ,Gallium Radioisotopes ,Rotator Cuff Injuries ,030207 dermatology & venereal diseases ,03 medical and health sciences ,Mice ,Rotator Cuff ,0302 clinical medicine ,Fibroblast activation protein, alpha ,In vivo ,Positron Emission Tomography Computed Tomography ,Endopeptidases ,medicine ,Animals ,Orthopedics and Sports Medicine ,Rotator cuff ,Fibroblast ,biology ,business.industry ,Membrane Proteins ,General Medicine ,Fibroblasts ,Tendon ,Fibronectin ,Disease Models, Animal ,030104 developmental biology ,medicine.anatomical_structure ,biology.protein ,Surgery ,ACTA2 ,business ,Preclinical imaging - Abstract
Background Rotator cuff repair site failure is a well-established clinical concern. Tendon-to-bone healing is initiated by inflammatory mediators followed by matrix synthesis by fibroblasts. The kinetics of fibroblast accumulation and activity are currently poorly understood. Methods Ninety-six mice underwent supraspinatus tendon repair. Six were used for imaging using a novel 68Gallium (Ga)-labeled fibroblast activation protein alpha (FAP-α) inhibitor and positron emission tomography-computed tomography (PET/CT) at days 0 (before surgery), 3, 7, 14, and 28. Sixty-eight animals were divided into 4 groups to be evaluated at 3, 7, 14, or 28 days. Twenty-two native shoulders from mice without surgery were used as the control group (intact tendon). Six animals from each group were used for histological analysis; 6 from each group were used for evaluation of fibroblastic response-related gene expression; and 10 mice each from the intact, 14-day, and 28-day groups were used for biomechanical testing. Results There was minimal localization of 68Ga-labeled FAP-α inhibitor in the shoulders at day 0 (before surgery). There was significantly increased uptake in the shoulders with surgery compared with the contralateral sides without surgery at 3, 7, and 14 days. 68Ga-labeled FAP-α inhibitor uptake in the surgically treated shoulders increased gradually and peaked at 14 days followed by a decrease at 28 days. Gene expression for smooth muscle alpha (α)-2 (acta2), FAP-α, and fibronectin increased postsurgery followed by a drop at 28 days. Immunohistochemical analysis showed that FAP-α-positive cell density followed a similar temporal trend, peaking at 14 days. All trends matched closely with the PET/CT results. Biomechanical testing demonstrated a gradual increase in failure load during the healing process. Conclusions 68Ga-labeled FAP-α inhibitor PET/CT allows facile, high-contrast in vivo 3-dimensional imaging of fibroblastic activity in a mouse rotator cuff repair model. Clinical relevance Noninvasive imaging of activated fibroblasts using labeled radiotracers may be a valuable tool to follow the progression of healing at the bone-tendon interface.
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- 2021
35. Automatic Product Copywriting for E-Commerce
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Xueying Zhang, Yanyan Zou, Hainan Zhang, Jing Zhou, Shiliang Diao, Jiajia Chen, Zhuoye Ding, Zhen He, Xueqi He, Yun Xiao, Bo Long, Han Yu, and Lingfei Wu
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FOS: Computer and information sciences ,Computer Science - Computation and Language ,Artificial Intelligence (cs.AI) ,Computer Science - Artificial Intelligence ,General Medicine ,Computation and Language (cs.CL) - Abstract
Product copywriting is a critical component of e-commerce recommendation platforms. It aims to attract users' interest and improve user experience by highlighting product characteristics with textual descriptions. In this paper, we report our experience deploying the proposed Automatic Product Copywriting Generation (APCG) system into the JD.com e-commerce product recommendation platform. It consists of two main components: 1) natural language generation, which is built from a transformer-pointer network and a pre-trained sequence-to-sequence model based on millions of training data from our in-house platform; and 2) copywriting quality control, which is based on both automatic evaluation and human screening. For selected domains, the models are trained and updated daily with the updated training data. In addition, the model is also used as a real-time writing assistant tool on our live broadcast platform. The APCG system has been deployed in JD.com since Feb 2021. By Sep 2021, it has generated 2.53 million product descriptions, and improved the overall averaged click-through rate (CTR) and the Conversion Rate (CVR) by 4.22% and 3.61%, compared to baselines, respectively on a year-on-year basis. The accumulated Gross Merchandise Volume (GMV) made by our system is improved by 213.42%, compared to the number in Feb 2021., Comment: Accepted by AAAI 2022/IAAI 2022 under the track of "Highly Innovative Applications of AI"
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- 2021
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36. Dual-Path Attention Compensation U-Net for Stroke Lesion Segmentation
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Wu Zelin, Haisheng Hui, Xueying Zhang, and Fenlian Li
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Article Subject ,General Computer Science ,Computer science ,General Mathematics ,Computer applications to medicine. Medical informatics ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,R858-859.7 ,Core network ,Binary number ,Neurosciences. Biological psychiatry. Neuropsychiatry ,Image (mathematics) ,Compensation (engineering) ,Image Processing, Computer-Assisted ,Humans ,Segmentation ,business.industry ,General Neuroscience ,Pattern recognition ,General Medicine ,Function (mathematics) ,Magnetic Resonance Imaging ,Stroke ,Task (computing) ,Path (graph theory) ,Artificial intelligence ,business ,Research Article ,RC321-571 - Abstract
For the segmentation task of stroke lesions, using the attention U-Net model based on the self-attention mechanism can suppress irrelevant regions in an input image while highlighting salient features useful for specific tasks. However, when the lesion is small and the lesion contour is blurred, attention U-Net may generate wrong attention coefficient maps, leading to incorrect segmentation results. To cope with this issue, we propose a dual-path attention compensation U-Net (DPAC-UNet) network, which consists of a primary network and auxiliary path network. Both networks are attention U-Net models and identical in structure. The primary path network is the core network that performs accurate lesion segmentation and outputting of the final segmentation result. The auxiliary path network generates auxiliary attention compensation coefficients and sends them to the primary path network to compensate for and correct possible attention coefficient errors. To realize the compensation mechanism of DPAC-UNet, we propose a weighted binary cross-entropy Tversky (WBCE-Tversky) loss to train the primary path network to achieve accurate segmentation and propose another compound loss function called tolerance loss to train the auxiliary path network to generate auxiliary compensation attention coefficient maps with expanded coverage area to perform compensate operations. We conducted segmentation experiments using the 239 MRI scans of the anatomical tracings of lesions after stroke (ATLAS) dataset to evaluate the performance and effectiveness of our method. The experimental results show that the DSC score of the proposed DPAC-UNet network is 6% higher than the single-path attention U-Net. It is also higher than the existing segmentation methods of the related literature. Therefore, our method demonstrates powerful abilities in the application of stroke lesion segmentation.
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- 2021
37. Adenylate kinase 7 is a prognostic indicator of overall survival in ovarian cancer
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Yan Jiao, Yuechen Zhao, Yanqing Li, Yi-Nuo Guan, Li-Li Zhou, Xueying Zhang, and Lian-Wen Zheng
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Gene isoform ,Oncology ,medicine.medical_specialty ,Adenylate kinase ,Observational Study ,Down-Regulation ,Kaplan-Meier Estimate ,03 medical and health sciences ,0302 clinical medicine ,Downregulation and upregulation ,Internal medicine ,medicine ,Biomarkers, Tumor ,Humans ,030212 general & internal medicine ,the Cancer Genome Atlas ,Aged ,Ovarian Neoplasms ,adenylate kinase 7 ,business.industry ,Proportional hazards model ,Adenylate Kinase ,Cancer ,General Medicine ,Middle Aged ,medicine.disease ,Prognosis ,Phenotype ,ovarian cancer ,030220 oncology & carcinogenesis ,Female ,Signal transduction ,Ovarian cancer ,business ,Research Article - Abstract
Ovarian cancer (OC), a common malignant heterogeneous gynecological tumor, is the primary cause of cancer-related death in women worldwide. Adenylate kinase (AK) 7 belongs to the adenylate kinase (AK) family and is a cytosolic isoform of AK. Recent studies have demonstrated that AK7 is expressed in several human diseases, including cancer. However, there is a scarcity of reports on the relationship between AK7 and OC. Here, we compared the expression of AK7 in normal and cancerous ovarian tissues from The Cancer Genome Atlas database and used the c2 test to assess the correlation between AK7 levels and the clinical symptoms of OC. Finally, the prognostic significance of AK7 in OC was determined using the Kaplan-Meier analyses and Cox regression and performed gene set enrichment analysis to detect any relevant signaling pathways. We found that AK7 levels were substantially downregulated in OC than that in normal ovarian tissues (P
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- 2021
38. Exploration of ovine milk whey proteome during postnatal development using an iTRAQ approach
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Li Wanhong, Xueying Zhang, Qin Fang, Xiangpeng Yue, and Fadi Li
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Proteomics ,Whey protein ,lcsh:Medicine ,Biology ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,KEGG ,LC-MS/MS ,Sheep milk ,Agricultural Science ,Molecular Biology ,030304 developmental biology ,0303 health sciences ,General Neuroscience ,lcsh:R ,0402 animal and dairy science ,food and beverages ,04 agricultural and veterinary sciences ,General Medicine ,Food Science and Technology ,040201 dairy & animal science ,Hu sheep ,Isobaric labeling ,Membrane protein ,Biochemistry ,iTRAQ ,Proteome ,General Agricultural and Biological Sciences ,Biological regulation ,Zoology ,Biotechnology - Abstract
Background Ovine milk is a rich source of bioactive proteins that supports the early growth and development of the newborn lambs. A large number of researches had targeted to the identification of ovine milk fat globule membrane proteins (MFGMPs), caseins (CNs), mastitis milk proteins in past years, but the dynamic change tendency of milk whey proteins during postnatal development has received limited attention. This research aimed to investigate the dynamic changes of ovine milk whey proteins after delivery, and explore the functions of whey proteins on early development of the newborns. Methods In this research, Hu sheep milk samples were collected from six individuals by manual milking manner, at 0 d, 3 d, 7 d, 14 d, 28 d and 56 d after delivery, respectively. The milk whey proteins were identified and quantified by the isobaric tag for relative and absolute quantification (iTRAQ) coupled with liquid chromatography (LC)-electrospray ionization (ESI) tandem MS (MS/MS) methods. In addition, biological functions of differentially expressed proteins (DEPs) were annotated by Gene Ontology (GO) annotation and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis. Results A total of 310 proteins were identified , of which 121 were differentially expressed. In detail, 30 (10 up-regulated and 20 down-regulated), 22 (11 up-regulated and 11 down-regulated), 11 (four up-regulated and seven down-regulated), 11 (eight up-regulated and three down-regulated), 10 (six up-regulated and four down-regulated) DEPs were identified in 3 d vs. 0 d, 7 d vs. 3 d, 14 d vs. 7 d, 28 d vs. 14 d, 56 d vs. 28 d comparison groups, respectively. The GO annotation analysis revealed that biological process principally involved metabolic and biological regulation, the major cellular location were organelle, cell and extracellular region, and the mainly molecular function were binding and catalytic activity. Circadian rhythm, fatty acid biosynthesis and African trypanosomiasis were enriched by KEGG annotation analysis. Conclusion The study reveals a comprehensive understanding of Hu sheep milk proteome, suggesting whey proteins change dramatically in early development of newborn lambs, which provide a potential guidance for early weaning of lambs.
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- 2020
39. Assessment of Mitochondrial Dysfunction in a Murine Model of Supraspinatus Tendinopathy
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Susumu Wada, Scott A. Rodeo, Ying Zhang, Daoyun Chen, Xueying Zhang, and Xiang-Hua Deng
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Male ,medicine.medical_specialty ,Mitochondrial Diseases ,education ,030204 cardiovascular system & hematology ,Biomechanical testing ,Supraspinatus tendon ,Rotator Cuff Injuries ,03 medical and health sciences ,Mice ,Rotator Cuff ,0302 clinical medicine ,Medicine ,Animals ,Orthopedics and Sports Medicine ,Clinical significance ,cardiovascular diseases ,Tendon healing ,business.industry ,030229 sport sciences ,General Medicine ,medicine.disease ,Clip placement ,Tendon ,Surgery ,Biomechanical Phenomena ,Mitochondria ,Mice, Inbred C57BL ,Disease Models, Animal ,Oxidative Stress ,medicine.anatomical_structure ,Shoulder Impingement Syndrome ,Murine model ,Tendinopathy ,business - Abstract
Background The purpose of this study was to assess mitochondrial dysfunction in a murine model of supraspinatus tendinopathy. Methods Eighty-four mice (168 limbs) were included in the study. Supraspinatus tendinopathy was induced by inserting a microsurgical clip in the subacromial space of 63 mice bilaterally (126 limbs). Forty-two of these limbs were harvested at 4 weeks postoperatively, 42 underwent clip removal at 4 weeks after the initial procedure and were harvested at 2 weeks, and 42 underwent clip removal at 4 weeks and were harvested at 4 weeks. Forty-two limbs in the remaining 21 mice did not undergo surgical intervention and were utilized as the control group. Outcomes included biomechanical, histological, gene expression, superoxide dismutase (SOD) activity, and transmission electron microscopy (TEM) analyses. Results Radiographs confirmed stable clip position in the subacromial space at 4 weeks. Biomechanical testing demonstrated a 60% decrease in failure force of the supraspinatus tendons at 4 weeks compared with the control group. The failure force gradually increased at 2 and 4 weeks after clip removal. Histological analysis demonstrated inflammation surrounding the tendon with higher modified Bonar scores at 4 weeks after clip placement followed by gradual improvement following clip removal. The expression of mitochondrial-related genes was decreased at 4 weeks after clip placement and then significantly increased after clip removal. SOD activity decreased significantly at 4 weeks after clip placement but increased following clip removal. TEM images demonstrated alterations in morphology and the number of mitochondria and cristae at 4 weeks after clip placement with improvement after clip removal. Conclusions Mitochondrial dysfunction appears to be associated with the development of tendinopathy. Clinical relevance Mitochondrial protection may offer a potential strategy for delaying the development of tendinopathy and promoting tendon healing.
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- 2020
40. Blanching effects of radio frequency heating on enzyme inactivation, physiochemical properties of green peas (Pisum sativum L.) and the underlying mechanism in relation to cellular microstructure
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Yanan Sun, Xueying Zhang, Yequn Wang, Yunyang Wang, Chenchen Hu, Caiyue Zhang, Xiangwei Chen, and Hongfei Fu
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Hot Temperature ,Blanching ,Food Handling ,Radio Waves ,Color ,Analytical Chemistry ,Pisum ,Heating ,chemistry.chemical_compound ,Sativum ,Dielectric heating ,Freezing ,Food science ,Lipoxygenase Inhibitors ,Peroxidase ,biology ,Chemistry ,Peas ,food and beverages ,General Medicine ,Ascorbic acid ,biology.organism_classification ,Point of delivery ,Chlorophyll ,Taste ,biology.protein ,Food Science - Abstract
Fresh green peas require blanching to terminate enzymatic reaction induced quality deterioration before frozen storage. Radio frequency (RF) heating is a novel way of dry blanching for fruits and vegetables with high processing efficiency. In this study, blanching effects of RF heating on relative activities of lipoxygenase (LOX) and peroxidase (POD), physiochemical properties as well as cellular morphology changes of green peas were investigated. Results showed relative activities of pea LOX and POD reduced to 0.90 ± 0.78% and 1.10 ± 0.71%, respectively at 85 °C by RF heating with an electrode gap 105 mm. Weight loss, color, texture and electrolyte leakage of peas changed significantly with increasing temperature (60–85 °C). Ascorbic acid, chlorophyll and mineral contents had different loss after RF processing and long term heating at 115 mm exacerbated the loss of nutrients. Microstructure features showed the deconstruction of pea cell well and starch granule gelatinization.
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- 2020
41. Alterations of Rice (Oryza sativa L.) DNA Methylation Patterns Associated with Gene Expression in Response to Rice Black Streaked Dwarf Virus
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Zongtao Sun, Hehong Zhang, Junmin Li, Gaojie Hong, Linying Li, Yuqing He, and Xueying Zhang
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0106 biological sciences ,0301 basic medicine ,Bisulfite sequencing ,01 natural sciences ,Genome ,Article ,Catalysis ,Plant Viruses ,lcsh:Chemistry ,Inorganic Chemistry ,03 medical and health sciences ,Rice black-streaked dwarf virus ,Gene Expression Regulation, Plant ,Physical and Theoretical Chemistry ,RBSDV ,lcsh:QH301-705.5 ,Molecular Biology ,Gene ,Spectroscopy ,Plant Diseases ,Genetics ,Oryza sativa ,DNA methylation ,biology ,rice ,Organic Chemistry ,Chromosome Mapping ,food and beverages ,differentially methylated genes ,Oryza ,General Medicine ,Methylation ,biology.organism_classification ,Computer Science Applications ,030104 developmental biology ,Differentially methylated regions ,lcsh:Biology (General) ,lcsh:QD1-999 ,gene expression ,Transcriptome ,Genome, Plant ,010606 plant biology & botany - Abstract
Rice black-streaked dwarf virus (RBSDV) causes severe yield losses in rice (Oryza sativa L.) in China. Studies have shown that the mechanisms of DNA methylation-mediated plant defense against DNA viruses and RNA viruses are different. However, in rice its function in response to infection of RBSDV, a double-stranded RNA virus, remains unclear. In this study, high-throughput single-base resolution bisulfite sequencing (BS-Seq) was carried out to analyze the distribution pattern and characteristics of cytosine methylation in RBSDV-infected rice. Widespread differences were identified in CG and non-CG contexts between the RBSDV-infected and RBSDV-free rice. We identified a large number of differentially methylated regions (DMRs) along the genome of RBSDV-infected rice. Additionally, the transcriptome sequencing analysis obtained 1119 differentially expressed genes (DEGs). Correlation analysis of DMRs-related genes (DMGs) and DEGs filtered 102 genes with positive correlation and 71 genes with negative correlation between methylation level at promoter regions and gene expression. Key genes associated with maintaining DNA methylation in rice were analyzed by RT-qPCR and indicated that OsDMT702 might be responsible for the global increase of DNA methylation level in rice under RBSDV stress. Our results suggest important roles of rice DNA methylation in response to RBSDV and provide potential target genes for rice antiviral immunity.
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- 2020
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42. Effects of individual, family and community factors on the willingness of institutional elder care: a cross-sectional survey of the elderly in China
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Wenxin Yan, Xueying Zhang, Yanan Xing, Xinran Sun, Shuang Huang, Li Li, and Zhaoqing Wang
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Male ,individual, family and community environment of the elderly ,China ,Cross-sectional study ,Health Services for the Aged ,Disease ,Logistic regression ,03 medical and health sciences ,0302 clinical medicine ,Residence Characteristics ,Chinese elder-care ,Environmental health ,Surveys and Questionnaires ,Health care ,Odds Ratio ,Medicine ,Homes for the Aged ,Humans ,030212 general & internal medicine ,Aged ,Original Research ,Aged, 80 and over ,Family Characteristics ,institutional elder-care willingness ,business.industry ,Institutionalization ,General Medicine ,Middle Aged ,Home Care Services ,Stratified sampling ,Cross-Sectional Studies ,Logistic Models ,Attitude ,Spouse ,Multistage sampling ,the effects of one-child policy on the elderly ,Female ,Health Services Research ,business ,030217 neurology & neurosurgery - Abstract
ObjectiveTo investigate the effects of the willingness to live in elder care institutions associated with individual factors, family environment and the community environment in the elderly in China.DesignCross-sectional survey.SettingHeilongjiang Province, China.ParticipantsA total of 1003 elderly people were selected through multistage sampling in Heilongjiang Province.Primary and secondary outcome measuresA multistage, stratified sampling design was employed. Differences in health status, family environment and community environment of the respondents were compared with the t-test and χ2 test. Logistic regression analysis was performed to assess key determinants of willingness to live in institutions.ResultsThis study showed that 45.4% of respondents were willing to live in elder care institutions in the future. Factors influencing willingness to live in elder care institutions were age, house ownership, living with spouse and children, disease caregivers and availability of home healthcare services. The elders who had no property (OR=2.37, 95% CI 1.750 to 3.200, pConclusionsThese results suggest that the willingness to enter elder care institutions is affected by individual, family environmental and community environmental factors. We should vigorously develop community-centred intensive home-based elder care services by improving the quality and availability of home health services by expanding investment in the community.
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- 2020
43. Tepidiphilus baoligensis sp. nov., a Novel Bacterium of the Family Hydrogenophilaceae Isolated from an Oil Reservoir
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Yanhe Ma, Jing You, Guan Wang, Xiaochen Ma, Yanfen Xue, Jiliang Yu, and Xueying Zhang
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DNA, Bacterial ,China ,Stereochemistry ,Ubiquinone ,Applied Microbiology and Biotechnology ,Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,Phosphatidylcholine ,RNA, Ribosomal, 16S ,Nucleotide ,Oil and Gas Fields ,Gene ,Hydrogenophilaceae ,Phospholipids ,Phylogeny ,030304 developmental biology ,Phosphatidylglycerol ,chemistry.chemical_classification ,0303 health sciences ,Base Composition ,biology ,Phylogenetic tree ,Strain (chemistry) ,030306 microbiology ,Fatty Acids ,Nucleic Acid Hybridization ,General Medicine ,Sequence Analysis, DNA ,biology.organism_classification ,16S ribosomal RNA ,Bacterial Typing Techniques ,stomatognathic diseases ,chemistry ,Bacteria - Abstract
A Gram-negative, aerobic, motile, non-spore-forming and rod-shaped bacterium, designated strain B18-69 T, was isolated from oil-well production liquid in Baolige oilfield, China. The strain was able to grow at pH 6–9.5 (optimum at pH 7), in 0–4% (w/v) NaCl (optimum at 0.5–1%, w/v) and at 35–60 °C (optimum at 55 °C). Major cellular fatty acids were C16:0, C19:0 cyclo ω8c, C17:0 cyclo and C18:1 ω7c. The predominant respiratory quinone was ubiquinone 8. Major polar lipids were phosphatidylethanolamine (PE), phosphatidylglycerol (PG), diphosphatidylglycerol (DPG) and phosphatidylcholine (PC). Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain B18-69 T was most closely related to Tepidiphilus margaritifer DSM 15129 T (98.8% similarity). The draft genome of strain B18-69 T was composed of 2,250,419 bp, and the G+C content was 64.6 mol%. Average nucleotide identity (ANI) and digital DNA–DNA hybridization (dDDH) values between strain B18-69 T and T. margaritifer DSM 15129 T were 90.9% and 68.9%, respectively. Genotypic and phenotypic features indicate that strain B18-69 T represents a novel species of the genus Tepidiphilus, for which the name Tepidiphilus baoligensis sp. nov. is proposed. The type strain is B18-69 T (= CGMCC 1.13573 T = KCTC 62782 T).
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- 2020
44. Enhancing biomethane production and pyrene biodegradation by addition of bio-nano FeS or magnetic carbon during sludge anaerobic digestion
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Peiru Zhu, Xiaoyu Yong, Jun Zhou, Yajun Wang, Wei An, Lian Li, Xueying Zhang, and Honghua Jia
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animal structures ,0208 environmental biotechnology ,02 engineering and technology ,010501 environmental sciences ,01 natural sciences ,chemistry.chemical_compound ,Bioreactors ,Biogas ,Nano ,Environmental Chemistry ,Anaerobiosis ,Waste Management and Disposal ,0105 earth and related environmental sciences ,Water Science and Technology ,Magnetic carbon ,Pyrenes ,Sewage ,Magnetic Phenomena ,General Medicine ,Biodegradation ,Pulp and paper industry ,equipment and supplies ,Carbon ,020801 environmental engineering ,Anaerobic digestion ,chemistry ,Pyrene ,Sewage sludge treatment ,Methane - Abstract
Pyrene exerts toxic effects on methanogens during anaerobic digestion of sludge, thus affecting the efficiency of sludge treatment. This study evaluated the facilitated direct interspecific electron transfer (DIET) between bacteria and methanogens when bio-nano FeS or magnetic carbon is added into anaerobic reactors. Results showed that adding 200 mg/L bio-nano FeS or magnetic carbon clearly reduced the accumulation of short-chain fatty acids and avoided acidification during 25 days of anaerobic digestion. The methane productions were 98.38 L/kg total solid (TS) and 73.69 L/kg TS in the bio-nano FeS and magnetic carbon systems, respectively, which accelerated methane production by 58.1% and 33.4%, respectively, compared with the control system (40.26 L/kg TS). The pyrene removal rates reached 77.5% and 72.1% in the bio-nano FeS and magnetic carbon systems, whereas it was only 40.8% in the control system. Analysis of microbial community structure revealed that methanogens (e.g. Methanosarcina and Methanosaeta) and extracellular electron-transfer bacteria (e.g. Pseudomonas, Cloastridia, and Synergistetes) were enriched in the reactors added with bio-nano FeS or magnetic carbon. This result indicates that the addition of bio-nano FeS or magnetic carbon may promote the activity and growth of microorganisms to improve the efficiency of methane production and pyrene degradation by enhancing DIET.
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- 2020
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45. Application of the Theory of Planned Behavior and Uses and Gratifications Theory to Food-Related Photo-Sharing on Social Media
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Kim Bissell, Kim Baker, Xueying Zhang, and Sarah E. Pember
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030505 public health ,Nutrition Education ,Community population ,Theory of planned behavior ,Advertising ,General Medicine ,Entertainment ,03 medical and health sciences ,0302 clinical medicine ,Health promotion ,Normative ,Social media ,030212 general & internal medicine ,0305 other medical science ,Psychology ,Uses and gratifications theory - Abstract
Background and Purpose: Food-related photos are prolific on social media, but little is known about user motivations for sharing food photos. While food brands have begun to strategically utilize social media to target consumers and their eating behaviors, health promotion practitioners have made less concerted efforts in this area, perhaps because there is little research into the motivations and rewards for sharing food-related photos online. This study applies the Theory of Planned Behavior (TPB) and Uses and Gratifications (U & G) Theory to food-related social media photo sharing, thus, laying groundwork for future investigations of image-based nutrition education messaging. Methods: An online survey designed within the framework of the TPB and U&G was administered to both a community population and that of a large, Southeastern university (N = 478). Results: Attitudes were generally positive toward the behavior, and, within the TPB, the only significant predictor of intention to share food-related photos on social media. Primary motives for posting were entertainment and personal utility, while those for viewing others’ posts were entertainment and information-seeking. Conclusions: Food-photo sharing is a positive, socially normative behavior through which users gather information in an entertaining way, making social media prime tools for communicating healthy eating image-based messages.
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- 2018
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46. Expression profiles of mRNA and long noncoding RNA in the ovaries of letrozole-induced polycystic ovary syndrome rat model through deep sequencing
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Dai Xiaowei, Dandan Li, Xin Xu, Lulu Fu, Lianwen Zheng, Xueying Zhang, Ying Xu, Hao Ming, Jingshun Zhang, Yalan Ma, and Guo-qing Zhang
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0301 basic medicine ,endocrine system diseases ,Biological adhesion ,Biology ,Deep sequencing ,03 medical and health sciences ,Insulin resistance ,Nitriles ,Genetics ,medicine ,Animals ,Humans ,Gene Regulatory Networks ,RNA, Messenger ,Messenger RNA ,Sequence Analysis, RNA ,Competing endogenous RNA ,Gene Expression Profiling ,Ovary ,High-Throughput Nucleotide Sequencing ,General Medicine ,Triazoles ,medicine.disease ,Polycystic ovary ,female genital diseases and pregnancy complications ,Long non-coding RNA ,Rats ,Disease Models, Animal ,Gene Ontology ,030104 developmental biology ,Gene Expression Regulation ,Letrozole ,Cancer research ,Female ,RNA, Long Noncoding ,Signal transduction ,Polycystic Ovary Syndrome - Abstract
Polycystic ovary syndrome (PCOS) is one of the most common endocrine disorders in reproductive-aged women. However, the exact pathophysiology of PCOS remains largely unclear. We performed deep sequencing to investigate the mRNA and long noncoding RNA (lncRNA) expression profiles in the ovarian tissues of letrozole-induced PCOS rat model and control rats. A total of 2147 mRNAs and 158 lncRNAs were differentially expressed between the PCOS models and control. Gene ontology analysis indicated that differentially expressed mRNAs were associated with biological adhesion, reproduction, and metabolic process. Pathway analysis results indicated that these aberrantly expressed mRNAs were related to several specific signaling pathways, including insulin resistance, steroid hormone biosynthesis, PPAR signaling pathway, cell adhesion molecules, autoimmune thyroid disease, and AMPK signaling pathway. The relative expression levels of mRNAs and lncRNAs were validated through qRT-PCR. LncRNA-miRNA-mRNA network was constructed to explore ceRNAs involved in the PCOS model and were also verified by qRTPCR experiment. These findings may provide insight into the pathogenesis of PCOS and clues to find key diagnostic and therapeutic roles of lncRNA in PCOS.
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- 2018
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47. Effects of co-fermented collagen peptide-jackfruit juice on the immune response and gut microbiota in immunosuppressed mice
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Jun Cao, Xueying Zhang, Fuqiang Zhao, Chuan Li, Xuanri Shen, and Tingting Ma
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Spleen ,Biology ,Gut flora ,Analytical Chemistry ,Microbiology ,Immunocompromised Host ,Mice ,chemistry.chemical_compound ,Immune system ,Immunity ,medicine ,Animals ,Secretion ,General Medicine ,biology.organism_classification ,Gastrointestinal Microbiome ,Lactic acid ,Fruit and Vegetable Juices ,medicine.anatomical_structure ,chemistry ,Fermentation ,biology.protein ,Cytokines ,Collagen ,Signal transduction ,Antibody ,Artocarpus ,Food Science - Abstract
Recently, the development of fermented foods for ameliorating immunity and gut microbiota has attracted extensive attention. In this study, co-fermented collagen peptide-jackfruit juice was used in immunosuppressed mice to evaluate the immune response and gut microbiota modulatoration. The results showed that co-fermented peptide-jackfruit juice (FPJ) increased anti-oxidant capacity and lactic acid content. FPJ significantly promoted the immune organ (spleen and thymus) indexes, alleviated the injuries of colon tissue and stimulated the secretion of cytokines and immunoglobulins (IgA, IgM, IgG) (P 0.05). Moreover, FPJ significantly upregulated the gene expression of TNF-α, IL-4, IFN-γ, IL-2, IL-10, T-bet, Foxp3, RORγ and GATA3. Furthermore, FPJ improved gut microbiota composition and elevated the short-chain fatty acids (SCFAs) concentration. The relative abundances of pathogenic bacteria decreased while beneficial bacteria increased after administration FPJ. These findings suggested that FPJ could be developed as a promising functional food for immunomodulation.
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- 2021
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48. Morphine: double-faced roles in the regulation of tumor development
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Zhao Dai, Haichen Chu, Xueying Zhang, Ying Yan, and Yongxin Liang
- Subjects
0301 basic medicine ,Cancer Research ,Angiogenesis ,medicine.medical_treatment ,Central nervous system ,Analgesic ,Pain ,Inflammation ,Bioinformatics ,Metastasis ,03 medical and health sciences ,0302 clinical medicine ,Neoplasms ,medicine ,Animals ,Humans ,Morphine ,business.industry ,Cancer ,Immunosuppression ,General Medicine ,medicine.disease ,Analgesics, Opioid ,030104 developmental biology ,medicine.anatomical_structure ,Oncology ,030220 oncology & carcinogenesis ,Anesthesia ,medicine.symptom ,business ,medicine.drug - Abstract
Morphine, a highly potent analgesic, is one of the most effective drugs for the treatment of severe pain associated with cancer. It directly acts on the central nervous system to relieve pain, but also cause secondary complications, such as addiction, respiratory depression and constipation due to its activities on peripheral tissues. Besides pain relief, morphine is of great importance on cancer management with its effect on tumor development being the subject of debate for many years with some contradictory findings. Morphine has shown both tumor growth-promoting and growth-inhibiting effects in many published research studies. And various signaling pathways have been suggested to be involved in these effects of morphine. Based on a thorough literature review, we summarized the double-faced effects of morphine in tumor development, including tumor cell growth and apoptosis, metastasis, angiogenesis, immunomodulation and inflammation. And we attempted to optimize morphine administration in cancer patients to attenuate its tumor growth-promoting effects.
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- 2017
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49. The association between ambient particulate matters, nitrogen dioxide, and childhood scarlet fever in Hangzhou, Eastern China, 2014-2018
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Ka Chun Chong, Wei Cheng, Steven Yuk-Fai Lau, Shelan Liu, Jinren Pan, Xueying Zhang, Enfu Chen, Wanwan Sun, Zhao Yu, Huanhuan Li, and Feng Ling
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Distributed lag ,Male ,Risk ,Percentile ,China ,Environmental Engineering ,Scarlet Fever ,Health, Toxicology and Mutagenesis ,Lag ,0208 environmental biotechnology ,Population ,Nitrogen Dioxide ,Air pollution ,02 engineering and technology ,010501 environmental sciences ,medicine.disease_cause ,complex mixtures ,01 natural sciences ,chemistry.chemical_compound ,Animal science ,Air Pollution ,medicine ,Environmental Chemistry ,Humans ,Nitrogen dioxide ,Cities ,education ,Child ,0105 earth and related environmental sciences ,education.field_of_study ,Air Pollutants ,business.industry ,Public Health, Environmental and Occupational Health ,General Medicine ,General Chemistry ,Environmental Exposure ,Middle Aged ,medicine.disease ,Pollution ,020801 environmental engineering ,chemistry ,Relative risk ,Scarlet fever ,Female ,Particulate Matter ,business - Abstract
Background The emerging cases of childhood scarlet fever (SF) and worsening air pollution problems in Chinese cities suggests a potential linkage between them. However, few studies had explored this association in a large childhood population. Methods We conducted a time-series analysis using the daily count of SF and the daily concentrations of particulate matters with an aerodynamic diameter of 2.5 (PM2.5) and 10 (PM10), as well as nitrogen dioxide (NO2) in Hangzhou, China from 2014 to 2018. Distributed lag nonlinear models were used to estimate the lag effects of PM2.5, PM10 and NO2 for a maximum lag of 10 days, which were quantified using relative risk (RR) comparing the adjusted risks at the 2.5th (extremely low effect) and 97.5th (extremely high effect) percentiles of concentration of the three air pollutants to that at the median. Stratified RRs by sex were also reported. Results Using the median concentration as reference, for extremely high effect, the RR was the highest on lag days 5, 6, and 3 for PM2.5, PM10, and NO2 respectively. While on lag day 0, the RR of PM2.5, PM10, and NO2 were 1.04 (95%CI: 0.90–1.20), 1.07 (95%CI: 0.92–1.24), and 1.08 (95%CI: 0.92–1.26) respectively, the RRs increased constantly and cumulatively to the maximum values of 1.88 (95%CI: 1.33–2.66), 1.82 (95%CI: 1.29–2.55), and 2.19 (95%CI: 1.47–3.27) for PM2.5, PM10, and NO2 respectively on lag day 10. Subgroup analyses showed that females appeared to be more vulnerable to the three pollutants than males. Conclusion Our study provides evidence that PM2.5, PM10, and NO2 exert delayed effects on SF infection.
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- 2019
50. Characterization of urinary concentrations of heavy metals among socioeconomically disadvantaged black pregnant women
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Elaine Symanski, Pamela D Berens, Xueying Zhang, Kristina W. Whitworth, Inkyu Han, and Masoud Afshar
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Adult ,Urinary system ,Population ,chemistry.chemical_element ,Urine ,010501 environmental sciences ,Management, Monitoring, Policy and Law ,01 natural sciences ,Vulnerable Populations ,Article ,Arsenic ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Pregnancy ,Environmental health ,Metals, Heavy ,Medicine ,Humans ,030212 general & internal medicine ,education ,Cotinine ,0105 earth and related environmental sciences ,General Environmental Science ,education.field_of_study ,Cadmium ,business.industry ,Pregnant women ,General Medicine ,medicine.disease ,Pollution ,Texas ,3. Good health ,SOCIOECONOMICALLY DISADVANTAGED ,chemistry ,Socioeconomic Factors ,Metal exposure ,Cohort ,Female ,business ,Socioeconomically disadvantaged ,Environmental Monitoring - Abstract
The objective of this study was to characterize exposures to metals using biological samples collected on socioeconomically disadvantaged black pregnant women. We obtained 131 anonymous urine samples provided by black pregnant women visiting a Medicaid-serving prenatal clinic in Houston, TX, from March 27, 2017 to April 11, 2017. We analyzed urine samples for 15 metals including cadmium (Cd), arsenic (As), lead (Pb), and nickel (Ni) and for creatinine and cotinine. We found that median concentrations of zinc (Zn), selenium (Se), and aluminum (Al) among black pregnant women in this study were 1.5 to 3 times higher than levels reported among a cohort of well-educated non-Hispanic white pregnancy planners. We also observed elevated levels of urinary Cd and antimony (Sb) as compared with those reported for a nationally representative sample of adult women in the USA. Based on the results of an exploratory factor analysis, potential sources of metal exposures in this population may arise in home environments or be due to diet, industrial and natural sources, or traffic.
- Published
- 2019
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