1. Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset
- Author
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Pablo Martinez-Lage, Ulf Andreasson, Richard Dobson, Ellis Niemantsverdriet, Fabian Kilpert, Mikel Tainta, Michael Wittig, Mara ten Kate, Simon Lovestone, Lars Bertram, Henrik Zetterberg, Stephanie J.B. Vos, Dmitry Prokopenko, Frederik Barkhof, Jolien Schaeverbeke, Philip Scheltens, Shengjun Hong, Jill C. Richardson, Olivier Blin, Valerija Dobricic, Pieter Jelle Visser, Silvy Gabel, Cristina Legido-Quigley, Giovanni B. Frisoni, Johannes Streffer, Isabel Sala, Sebastiaan Engelborghs, José Luis Molinuevo, Andre Franke, Alberto Lleó, Isabelle Bos, Rudolph E. Tanzi, Lorena Rami, Kristel Sleegers, Betty M. Tijms, Régis Bordet, Charlotte E. Teunissen, Petronella Kettunen, Rik Vandenberghe, Julius Popp, Isabelle Cleynen, Gwendoline Peyratout, Kaj Blennow, Anders Wallin, Christine Van Broeckhoven, Psychiatrie & Neuropsychologie, RS: MHeNs - R1 - Cognitive Neuropsychiatry and Clinical Neuroscience, Alzheimers Dis Neuroimaging Initia, Universität zu Lübeck = University of Lübeck [Lübeck], Massachusetts General Hospital [Boston], Maastricht University [Maastricht], Vrije Universiteit Amsterdam [Amsterdam] (VU), University of Gothenburg (GU), Sahlgrenska University Hospital [Gothenburg], Catholic University of Leuven - Katholieke Universiteit Leuven (KU Leuven), University Hospitals Leuven [Leuven], University of Antwerp (UA), Vrije Universiteit Brussel (VUB), Université de Genève = University of Geneva (UNIGE), Istituto Centro San Giovanni di Dio Fatebenefratelli, Partenaires INRAE, Institut de Neurosciences des Systèmes (INS), Aix Marseille Université (AMU)-Institut National de la Santé et de la Recherche Médicale (INSERM), GlaxoSmithKline [Stevenage, UK] (GSK), GlaxoSmithKline [Headquarters, London, UK] (GSK), CHU Lille, Université de Lille, Clinic Barcelona Hospital Universitari, University of Oxford, Centro de Investigacion Biomédica en Red sobre Enfermedades Neurodegenerativas (CIBERNED), Instituto de Salud Carlos III [Madrid] (ISC), Geneva University Hospital (HUG), Lausanne University Hospital, Center for Research and Advanced Therapies CITA-Alzheimer Foundation [San Sebastián], King‘s College London, University College of London [London] (UCL), Steno Diabetes Center, VIB [Belgium], Amsterdam UMC - Amsterdam University Medical Center, UCL Institute of Neurology, Queen Square [London], UK Dementia Research Institute (UK DRI), UCB BioPharma [Braine l’Alleud, Belgium], Christian-Albrechts University of Kiel, University of Oslo (UiO), Alzheimer's Disease Neuroimaging Initiative (ADNI), Amsterdam Neuroscience - Neurodegeneration, Neurology, Laboratory Medicine, Radiology and nuclear medicine, Clinical sciences, Neuroprotection & Neuromodulation, and Pathologic Biochemistry and Physiology
- Subjects
0301 basic medicine ,Male ,Genome-wide association study ,0302 clinical medicine ,RISK VARIANTS ,Biomarker discovery ,MIF-AD Multimodal Biomarker Discovery dataset ,Psychiatry ,Alzheimer's disease ,Psychiatry and Mental health ,Female ,Life Sciences & Biomedicine ,SUSCEPTIBILITY LOCI ,Neuroscience(all) ,Single-nucleotide polymorphism ,Genomics ,tau Proteins ,Computational biology ,Biology ,Molecular neuroscience ,elderly ,Article ,lcsh:RC321-571 ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,Alzheimer Disease ,medicine ,Dementia ,SNP ,Humans ,CSF biomarkers ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,Biological Psychiatry ,Aged ,Amyloid beta-Peptides ,Science & Technology ,business.industry ,[SCCO.NEUR]Cognitive science/Neuroscience ,Neurodegenerative disorder ,medicine.disease ,Personalized medicine ,Genetic architecture ,Peptide Fragments ,030104 developmental biology ,Human medicine ,TAU ,business ,030217 neurology & neurosurgery ,Biomarkers ,dementia ,Genome-Wide Association Study - Abstract
Alzheimer’s disease (AD) is the most prevalent neurodegenerative disorder and the most common form of dementia in the elderly. Susceptibility to AD is considerably determined by genetic factors which hitherto were primarily identified using case–control designs. Elucidating the genetic architecture of additional AD-related phenotypic traits, ideally those linked to the underlying disease process, holds great promise in gaining deeper insights into the genetic basis of AD and in developing better clinical prediction models. To this end, we generated genome-wide single-nucleotide polymorphism (SNP) genotyping data in 931 participants of the European Medical Information Framework Alzheimer’s Disease Multimodal Biomarker Discovery (EMIF-AD MBD) sample to search for novel genetic determinants of AD biomarker variability. Specifically, we performed genome-wide association study (GWAS) analyses on 16 traits, including 14 measures derived from quantifications of five separate amyloid-beta (Aβ) and tau-protein species in the cerebrospinal fluid (CSF). In addition to confirming the well-established effects of apolipoprotein E (APOE) on diagnostic outcome and phenotypes related to Aβ42, we detected novel potential signals in the zinc finger homeobox 3 (ZFHX3) for CSF-Aβ38 and CSF-Aβ40 levels, and confirmed the previously described sex-specific association between SNPs in geminin coiled-coil domain containing (GMNC) and CSF-tau. Utilizing the results from independent case–control AD GWAS to construct polygenic risk scores (PRS) revealed that AD risk variants only explain a small fraction of CSF biomarker variability. In conclusion, our study represents a detailed first account of GWAS analyses on CSF-Aβ and -tau-related traits in the EMIF-AD MBD dataset. In subsequent work, we will utilize the genomics data generated here in GWAS of other AD-relevant clinical outcomes ascertained in this unique dataset.
- Published
- 2020