1. Genomics of Ocular Chlamydia trachomatis After 5 Years of SAFE Interventions for Trachoma in Amhara, Ethiopia
- Author
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Zerihun Tadesse, Scott D. Nash, Mulat Zerihun, Charlotte A Williams, Judith Breuer, E. Kelly Callahan, Ambahun Chernet, Taye Zeru, Harry Pickering, Andrew W. Nute, Robin L. Bailey, Eshetu Sata, Mahiteme Haile, and Martin J. Holland
- Subjects
0301 basic medicine ,medicine.medical_specialty ,medicine.drug_class ,030231 tropical medicine ,Population ,Antibiotics ,Psychological intervention ,Chlamydia trachomatis ,Azithromycin ,medicine.disease_cause ,Infant, Newborn, Diseases ,Gonorrhea ,03 medical and health sciences ,0302 clinical medicine ,Antibiotic resistance ,Internal medicine ,Drug Resistance, Bacterial ,Prevalence ,medicine ,Humans ,Immunology and Allergy ,education ,Mass drug administration ,030304 developmental biology ,Trachoma ,0303 health sciences ,education.field_of_study ,Transmission (medicine) ,business.industry ,Public health ,Infant, Newborn ,Infant ,Tropical disease ,Genomics ,medicine.disease ,Anti-Bacterial Agents ,3. Good health ,030104 developmental biology ,Infectious Diseases ,Ethiopia ,Macrolides ,business ,medicine.drug - Abstract
BackgroundTo eliminate trachoma as a public health problem, the WHO recommends the SAFE strategy. As part of the SAFE strategy in the Amhara Region, Ethiopia, the Trachoma Control Program distributed over 124 million doses of antibiotic between 2007 and 2015. Despite these interventions, trachoma remained hyperendemic in many districts and a considerable level of Chlamydia trachomatis (Ct) infection was evident.MethodsWe utilised residual material from Abbott m2000 Ct diagnostic tests to sequence 99 ocular Ct samples from Amhara and investigated the role of Ct genomic variation in the continued transmission of Ct following 5 years of SAFE.FindingsSequences were typical of ocular Ct, at the whole-genome level and in tissue tropism-associated genes. There was no evidence of macrolide-resistance in this Ct population. Polymorphism in a region around ompA gene was associated with village-level TF prevalence. Additionally, greater ompA diversity at the district-level was associated with increased Ct infection prevalence.InterpretationWe found no evidence for Ct genomic variation contributing to continued transmission of Ct after treatment, adding to previous evidence that azithromycin does not drive acquisition of macrolide resistance alleles in Ct. Increased Ct infection in villages and in districts with more ompA variants requires longitudinal investigation to understand what impact this may have on treatment success and host immunity.FundingEuropean Commission; Neglected Tropical Disease Support Center; International Trachoma Initiative
- Published
- 2020