70 results on '"Jim Iley"'
Search Results
2. A carbamate-based approach to primaquine prodrugs: Antimalarial activity, chemical stability and enzymatic activation
- Author
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Virgílio E. do Rosário, Rui Moreira, Luís Constantino, Graça Mata, and Jim Iley
- Subjects
Carbamate ,Plasmodium berghei ,Stereochemistry ,medicine.medical_treatment ,Metabolite ,Clinical Biochemistry ,Pharmaceutical Science ,Primaquine ,Biochemistry ,Antimalarials ,Mice ,chemistry.chemical_compound ,Hydrolysis ,Drug Stability ,Anopheles ,Drug Discovery ,medicine ,Animals ,Humans ,Prodrugs ,Molecular Biology ,Alkyl ,chemistry.chemical_classification ,Mice, Inbred BALB C ,Aryl ,Organic Chemistry ,Oxidative deamination ,Prodrug ,Rats ,Enzyme Activation ,Enzyme ,Liver ,chemistry ,Butyrylcholinesterase ,Molecular Medicine ,Carbamates - Abstract
O -Alkyl and O -aryl carbamate derivatives of the antimalarial drug primaquine were synthesised as potential prodrugs that prevent oxidative deamination to the inactive metabolite carboxyprimaquine. Both O -alkyl and O -aryl carbamates undergo hydrolysis in alkaline and pH 7.4 phosphate buffers to the parent drug, with O -aryl carbamates being ca. 10 6 –10 10 more reactive than their O -alkyl counterparts. In human plasma O -alkyl carbamates were stable, whereas in contrast their O -aryl counterparts rapidly released the corresponding phenol product, with primaquine being released only slowly over longer incubation periods. Activation of the O -aryl carbamates in human plasma appears to be catalysed by butyrylcholinesterase (BuChE), which leads to carbamoylation of the catalytic serine of the enzyme followed by subsequent slow enzyme reactivation and release of parent drug. Most of the O -aryl and O -alkyl carbamates are activated in rat liver homogenates with half-lives ranging from 9 to 15 h, while the 4-nitrophenyl carbamate was hydrolysed too rapidly to determine an accurate rate constant. Antimalarial activity was studied using a model consisting of Plasmodium berghei , Balb C mice and Anopheles stephensi mosquitoes. When compared to controls, ethyl and n -hexyl carbamates were able to significantly reduce the percentage of infected mosquitos as well as the mean number of oocysts per infected mosquito, thus indicating that O -alkyl carbamates of primaquine have the potential to be developed as transmission-blocking antimalarial agents.
- Published
- 2012
3. Basic hydrolysis of quinolinyl N,N -dimethylcarbamates: a two-step mechanism
- Author
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Susana Santos, Daniel Silva, Jim Iley, and Fátima Norberto
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chemistry.chemical_classification ,Base (chemistry) ,Organic Chemistry ,Inorganic chemistry ,Rate-determining step ,Medicinal chemistry ,chemistry.chemical_compound ,Hydrolysis ,Deprotonation ,chemistry ,Tetrahedral carbonyl addition compound ,Kinetic isotope effect ,Hydroxide ,Reactivity (chemistry) ,Physical and Theoretical Chemistry - Abstract
The reactivity of 6-quinolinyl and 8-quinolinyl N,N-dimethylcarbamates was examined in several aqueous basic media. A quadratic dependence was observed for the constant rates upon hydroxide concentration for both compounds, which is a typical behaviour of a mechanism involving a base-catalysed deprotonation of the tetrahedral intermediate with the formation of a dianion at high concentrations of hydroxide ion, while at lower concentrations a specific-base catalysed addition–elimination mechanism seems to be predominant. The reactivity of 8-quinolinyl N,N-dimethylcarbamate was also studied in several amine buffers, showing specific base catalysis. The reactivity of 6-quinolinyl N,N-dimethylcarbamate was studied in H2O and in D2O and the solvent isotope effect supports the proposal of a mechanism involving a specific-base hydrolysis. All results confirm the existence of a mechanism with a rate determining step involving the substrate anion and a second mole of hydroxide ion. This mechanism was so far unknown for carbamate reactivity, being only known to occur with amides. Copyright © 2011 John Wiley & Sons, Ltd.
- Published
- 2011
4. Novel heterocyclic α-amino acids with sulfur-containing side-chains
- Author
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Jim Iley, Raymond C. F. Jones, and Lisa J. Crumpling
- Subjects
inorganic chemicals ,chemistry.chemical_classification ,Stereochemistry ,Organic Chemistry ,chemistry.chemical_element ,Sulfur containing ,Sulfur ,Amino acid ,lcsh:QD241-441 ,chemistry ,lcsh:Organic chemistry ,Side chain ,Linker ,Cysteine - Abstract
S-Alkylation of an N-protected cysteine ester with a range of ω-iodoalkyl heterocycles affords 11 novel non-proteinogenic heterocyclic amino acids having a sulfur atom in the backboneheterocycle linker.
- Published
- 2011
5. New Methodologies for the Synthesis of 3-Acylpyridone Metabolites
- Author
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Abdul K. Choudhury, Raymond C. F. Jones, Jim Iley, Vickie McKee, Christopher Lumley, and Georgia Loizou
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Scaffold ,Chemistry ,Organic Chemistry ,Organic chemistry - Abstract
A core isoxazolo[4,3-c]pyridin-4-one scaffold is prepared and elaborated at C-3(Me) and C-7 as a masked building block for 3-acylpyridin-2-ones related to the acylpyridone natural products.
- Published
- 2010
6. Intermolecular 1,3-dipolar cycloadditions of azomethine imines
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Stephen J. Hollis, Raymond C. F. Jones, and Jim Iley
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lcsh:QD241-441 ,chemistry.chemical_classification ,Pyrazolidine ,Dipole ,chemistry.chemical_compound ,lcsh:Organic chemistry ,chemistry ,Organic Chemistry ,Polymer chemistry ,Intermolecular force ,Photochemistry ,1,3-dipole ,Alkyl - Abstract
Dipolar cycloadditions of azomethine imines, formed in situ from aldehydes and N1-alkyl-N2-acylhydrazines, with electron-deficient dipolarophiles produce pyrazolidines: mono-substituted dipolarophiles afford principally 4-substituted pyrazolidines.
- Published
- 2006
7. Mechanism of hydrolysis of substituted N-thiazolylcarbamate esters in OH- solutions
- Author
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Teresa Pamplona, Jim Iley, Fátima Norberto, and M. Eduarda M. Araújo
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Carbamate esters ,Hydrolysis ,010405 organic chemistry ,Chemistry ,Organic chemistry ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Mechanism (sociology) ,0104 chemical sciences ,E1cB-elimination reaction - Abstract
Substituted secondary N-thiazolylcarbamate esters and some tertiary N-methyl, N-thiazolyl carbamate esters have been synthesised and the mechanism of the OH- catalysed hydrolyses investigated. These proved to be E1cB and BAc2 respectively, and this behaviour was compared with that of other carbamates.
- Published
- 2006
8. The Bsmoc group as a novel scaffold for the design of irreversible inhibitors of cysteine proteases
- Author
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Luísa M. D. R. S. Martins, Rui Moreira, Cláudio M. Soares, Jim Iley, Rita C. Guedes, and Repositório da Universidade de Lisboa
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Models, Molecular ,Proteases ,Stereochemistry ,Clinical Biochemistry ,Chemistry, Organic ,Pharmaceutical Science ,Chemistry, Medicinal ,Cysteine Proteinase Inhibitors ,Biochemistry ,Cathepsin B ,chemistry.chemical_compound ,Carbamic acid ,Drug Discovery ,Molecular Biology ,Pancreatic elastase ,Serine protease ,biology ,Chemistry ,Organic Chemistry ,Hydrogen Bonding ,General Medicine ,Kinetics ,Papain ,Enzyme inhibitor ,Drug Design ,Michael reaction ,biology.protein ,Molecular Medicine ,Cysteine - Abstract
Carbamate and ester derivatives of the 1,1-dioxobenzo[b]thiophen-2-ylmethyloxycarbonyl (Bsmoc) scaffold react readily with thiols via a Michael addition at rates not significantly affected by the nature of the carboxylic or carbamic acid leaving group. These Michael acceptors are irreversible inhibitors of the cysteine proteases papain and human liver cathepsin B, displaying first-order kinetics with respect to inhibitor concentration. In contrast, none of the Bsmoc derivatives inhibited porcine pancreatic elastase, a serine protease. (C) 2006 Elsevier Ltd. All rights reserved.
- Published
- 2006
9. Amidomethylation of amodiaquine: antimalarial N-Mannich base derivatives
- Author
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Catarina M. Casimiro, Rui Moreira, Jose O. Goncaves, Jim Iley, Francisca Lopes, Peter N. Horton, Joana Bom, Michael B. Hursthouse, and Rita Capela
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Drug ,chemistry.chemical_classification ,biology ,media_common.quotation_subject ,Organic Chemistry ,Plasmodium falciparum ,General Medicine ,Mannich base ,Amodiaquine ,biology.organism_classification ,Biochemistry ,Medicinal chemistry ,chemistry.chemical_compound ,Enzyme ,chemistry ,Drug Discovery ,medicine ,Ic50 values ,IC50 ,medicine.drug ,media_common - Abstract
Novel N-Mannich base-type derivatives of the antimalarial drug amodiaquine were synthesised by reaction with tertiary N-chloromethylamides. With the exception of the derivative of ethyl hippurate, all the so-formed (1-amidomethyl-1H-quinolin-4-ylidene)arylamines displayed high chemical and enzymatic stability. These compounds displayed antimalarial activity against the multi-drug resistant Plasmodium falciparum strain Dd2 (IC50 values 15–31 nM) and demonstrated no significant loss in activity compared to amodiaquine (IC50 30 nM).
- Published
- 2004
10. Synthesis of imidazolidin-4-one and 1H-imidazo[2,1-a]isoindole-2,5(3H,9bH)-dione derivatives of primaquine: scope and limitations
- Author
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Paula Chambel, Maria João Araújo, Jose Morais, Jim Iley, Rui Moreira, Paula Gomes, Zélia Azevedo, Nuno Vale, Manuela Rodrigues, and Faculdade de Ciências
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Stereochemistry ,010402 general chemistry ,Medicinal chemistry ,01 natural sciences ,Biochemistry ,chemistry.chemical_compound ,Hydrolysis ,Chemical sciences [Natural sciences] ,Drug Discovery ,Acetone ,Protecting group ,chemistry.chemical_classification ,Química [Ciências exactas e naturais] ,010405 organic chemistry ,Organic Chemistry ,Veratraldehyde ,Diastereomer ,Química ,General Medicine ,0104 chemical sciences ,3. Good health ,Amino acid ,Chemical sciences ,chemistry ,Stereoselectivity ,Isoindole - Abstract
The synthesis of imidazolidin-4-one derivatives of primaquine as potential antimalarial agents is described. The target compounds were synthesized in three steps: (i) condensation of (±)-primaquine with N α -protected amino acids, (ii) removal of the N α -protecting group, and (iii) reaction of the N-acylprimaquine with a carbonyl compound: acetone, three cyclic ketones and veratraldehyde. Using 2-formylbenzoic acid in the third step afforded 1 H -imidazo[2,1- a ]isoindole-2,5(3 H ,9b H )-diones. All products were isolated in good to excellent yields. Whereas imidazolidin-4-ones were formed as mixtures of all possible diastereomers in equal amounts, 1 H -imidazo[2,1- a ]isoindole-2,5(3 H ,9b H )-diones were produced in a stereoselective fashion. The compounds hydrolyse very slowly ( t 1/2 5–30 d) in pH 7.4 buffer to release primaquine. These primaquine derivatives are being submitted to biological assays, and preliminary results of their antimalarial activity are quite encouraging.
- Published
- 2004
11. Oxidation of tertiary benzamides by 5,10,15,20-tetraphenylporphyrinatoironIIIchloride–tert-butylhydroperoxide
- Author
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Luís Constantino, Jim Iley, and Repositório da Universidade de Lisboa
- Subjects
Steric effects ,chemistry.chemical_classification ,Chemistry ,Stereochemistry ,Organic Chemistry ,Chemistry, Organic ,Substituent ,Alkylation ,Hydrogen atom abstraction ,Biochemistry ,Medicinal chemistry ,chemistry.chemical_compound ,Kinetic isotope effect ,Reactivity (chemistry) ,Physical and Theoretical Chemistry ,Alkyl ,Isopropyl - Abstract
Tertiary benzamides are oxidized by the 5,10,15,20-tetraphenylporphyrinatoiron(III) chloride-(BuOOH)-O-t system at the alpha-position of the N-alkyl groups. The major products are N-acylamides, although small amounts of secondary amides, the products of dealkylation, are also formed. Plots of initial rate versus initial substrate concentration for these reactions are curved, suggesting formation of an oxidant-substrate complex. The reaction rates are almost insensitive to the substituent in the benzamide moiety, but there is a kinetic deuterium isotope effect of 5.6 for the reaction of the N, N-(CH3)(2) and N, N-(CD3)(2) compounds. Comparison of the reaction products from N-alkyl-N-methylbenzamides reveals that, for all compounds studied except N-cyclopropyl-N-methylbenzamide, oxidation of the alkyl group is preferred, strongly so (by a factor of ca. 8) for N-allyl-N-methylbenzamide. In contrast to microsomal oxidation, there is no steric hindrance to oxidation of an isopropyl group. Thus, we propose that these reactions proceed via hydrogen atom abstraction to form an alpha-carbon-centred radical and we attribute the observed diminished reactivity of the N-cyclopropyl group to its known reluctance to form a cyclopropyl radical. Oxidation of N-methyl-N-(2,2,3,3-tetramethylcyclopropyl)methylbenzamide provides preliminary evidence for rearrangement of an intermediate radical. While it remains unclear how these reactions proceed directly to the N-acyl products, we have established that N- hydroxymethyl, N-alkoxymethyl and N-alkylperoxymethyl intermediates are not involved.
- Published
- 2004
12. Synthesis, Stability and In Vitro Dermal Evaluation of Aminocarbonyloxymethyl Esters as Prodrugs of Carboxylic Acid Agents
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Jarkko Rautio, Eduarda Mendes, Jim Iley, Rui Moreira, João Neres, Tomi Järvinen, Tânia Furtado, and Repositório da Universidade de Lisboa
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Adult ,Biochemistry & Molecular Biology ,Administration, Topical ,Carboxylic acid ,Clinical Biochemistry ,Chemistry, Organic ,Pharmaceutical Science ,Chemistry, Medicinal ,Biochemistry ,Plasma ,Hydrolysis ,chemistry.chemical_compound ,Drug Stability ,Valine ,Amide ,Drug Discovery ,medicine ,Humans ,Organic chemistry ,Prodrugs ,Amines ,Molecular Biology ,Skin ,chemistry.chemical_classification ,Drug Carriers ,Anti-Inflammatory Agents, Non-Steroidal ,Organic Chemistry ,Esters ,Prodrug ,Amino acid ,Flufenamic acid ,chemistry ,Molecular Medicine ,Leucine ,Half-Life ,medicine.drug - Abstract
Aminocarbonyloxymethyl esters 3 based on (S)-amino acid carriers were synthesised and evaluated as potential prodrugs of carboxylic acid agents. In addition, the compounds were evaluated as topical prodrugs with the aim of improving the dermal delivery of two non-steroidal anti-inflammatory agents: naproxen and flufenamic acid. The lipophilicities of these compounds were determined and their hydrolyses in aqueous solutions and in human plasma were examined. Compounds 3 containing a secondary carbamate group were hydrolysed at pH 7.4 by two different routes: (i) direct nucleophilic attack at the ester carbonyl carbon leading to the release of the parent carboxylic acid and (ii) intramolecular rearrangement involving an O--N acyl migration, leading to the formation of the corresponding amide. The rearrangement pathway is highly dependent on the size of the carboxylic acid and amino acid substituents, being eliminated when the amino acid is valine or leucine. In contrast, compounds 3 decomposed in plasma exclusively through ester hydrolysis, most releasing the parent carboxylic acid quantitatively with half-lives shorter than 5 min. The permeation of selected prodrugs across excised postmortem human skin was studied in vitro. All prodrugs evaluated exhibited a lower flux than the corresponding parent carboxylic acid. The poor skin permeation observed for compounds 3 is most probably due to their low aqueous solubility and high partition coefficient. (C) 2002 Elsevier Science Ltd. All rights reserved.
- Published
- 2002
13. Synthesis by conjugate radical addition of new heterocyclic amino acids with nucleobase side chains
- Author
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Didier Jean-Claude Berthelot, Raymond C. F. Jones, and Jim Iley
- Subjects
Purine ,chemistry.chemical_classification ,Pyrimidine ,Stereochemistry ,Organic Chemistry ,Biochemistry ,Nucleobase ,Adduct ,Amino acid ,chemistry.chemical_compound ,chemistry ,Drug Discovery ,Side chain ,Nucleic acid analogue ,Conjugate - Abstract
N -(2-iodoethyl) and N -(3-iodopropyl)pyrimidines and purines undergo stereoselective conjugate radical addition with an optically active oxazolidinone acceptor to give syn -adducts that can be converted into amino acids carrying pyrimidine and purine (nucleobase) side chains.
- Published
- 2001
14. Pyrrolo[1,2,3-de]quinoxalines: unexpected products from 1,3-dipolar cycloaddition of dihydroimidazolium ylides
- Author
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Jim Iley, Mark E. Light, Raymond C. F. Jones, Pedro M. J. Lory, Michael B. Hursthouse, and Simon C. Coles
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Chemistry ,Computational chemistry ,Organic Chemistry ,Drug Discovery ,1,3-Dipolar cycloaddition ,Organic chemistry ,Biochemistry ,Cycloaddition - Abstract
4,5-Dihydroimidazoles undergo an N-alkylation and 1,3-dipolar cycloaddition cascade with unsaturated α-bromoketones, with subsequent eliminative ring-opening, recyclisation and tautomerisation to form unexpected hexahydropyrrolo[1,2,3-de]quinoxalines.
- Published
- 2001
15. Kinetics and mechanism of hydrolysis of N-amidomethylsulfonamides
- Author
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Jim Iley, Rui Moreira, Francisca Lopes, and Repositório da Universidade de Lisboa
- Subjects
chemistry.chemical_classification ,Chemistry, Physical ,Chemistry ,Chemistry, Organic ,Protonation ,Medicinal chemistry ,Sulfonamide ,chemistry.chemical_compound ,Hydrolysis ,Nucleophile ,Amide ,Hydroxide ,Organic chemistry ,Reactivity (chemistry) ,Benzoic acid - Abstract
The kinetics of the hydrolyses of secondary and tertiary N-amidomethylsulfonamides were studied at 50 degreesC. Both types of N-amidomethylsulfonamide hydrolyse through acid- and base-catalysed processes, as indicated by the pH-rate profiles. The order of reactivity for the acid-catalysed pathway implies a mechanism involving protonation of the amide followed by expulsion of a neutral amide and formation of a sulfonyliminium ion. In the base-catalysed region, compound 5c, which is substituted at both amide and sulfonamide nitrogen atoms, hydrolyses by nucleophilic attack of hydroxide ion at the amide carbonyl carbon atom to form benzoic acid and a sulfonamide. In contrast, compound 5b, which contains a sulfonamide NH group, hydrolyses to benzamide and sulfonamide products by an E1cb(rev) mechanism involving ionisation of the sulfonamide. Compound 5a, which contains an amide NH, also hydrolyses to sulfonamide and amide products, probably by an E2 mechanism.
- Published
- 2001
16. 3-(1-Aminoalkyl)isoxazole-4-carboxylic acids as peptide bond replacements
- Author
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Jim Iley, Raymond C. F. Jones, and Stephen J. Hollis
- Subjects
chemistry.chemical_classification ,Stereochemistry ,Organic Chemistry ,Oxide ,Peptide ,Catalysis ,Cycloaddition ,Amino acid ,Inorganic Chemistry ,chemistry.chemical_compound ,chemistry ,Peptide bond ,Physical and Theoretical Chemistry ,Isoxazole - Abstract
An orthogonally protected 3-(1-aminoalkyl)isoxazole-4-carboxylic acid has been prepared by 1,3-dipolar cycloaddition of a suitably protected α-aminonitrile oxide with an enaminoester dipolarophile; this protected amino acid has been deprotected and coupled independently at either the C- or N-terminus to produce pseudopeptide segments as peptide mimetics that contain a cis -amide bond replacement.
- Published
- 2000
17. Triazene drug metabolites. Part 17: synthesis and plasma hydrolysis of acyloxymethyl carbamate derivatives of antitumour triazenes
- Author
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Ana Paula Francisco, Emilia Carvalho, Eduarda Rosa, and Jim Iley
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Clinical Biochemistry ,Pharmaceutical Science ,Antineoplastic Agents ,Biochemistry ,Chemical synthesis ,Plasma ,Structure-Activity Relationship ,Hydrolysis ,chemistry.chemical_compound ,Drug Stability ,Enzymatic hydrolysis ,Drug Discovery ,Humans ,Organic chemistry ,Prodrugs ,Carboxylate ,Triazene ,Molecular Biology ,Chromatography, High Pressure Liquid ,Bond cleavage ,Silver carbonate ,Aspirin ,Organic Chemistry ,Hydrogen-Ion Concentration ,Prodrug ,Kinetics ,chemistry ,Molecular Medicine ,Carbamates ,Triazenes - Abstract
A series of 3-acyloxymethyloxycarbonyl-1-aryl-3-methyltriazenes 5 was synthesised by the sequential reaction of 1-aryl-3-methyltriazenes with (i) chloromethyl chloroformate, (ii) NaI in dry acetone, and (iii) either the silver carboxylate or the carboxylic acids in the presence of silver carbonate. The hydrolysis of these compounds was studied in pH 7.7 isotonic phosphate buffer and in human plasma. Triazene acyloxycarbamates demonstrated their ability to act as substrates for plasma enzymes. For compound 5f, a pH-rate profile was obtained which showed the hydrolysis to involve acid-base catalysis. The reaction is also buffer catalysed. Thus, at pH 7.7, pH-independent, base-catalysed and buffer-catalysed processes all contribute to the hydrolysis reaction. The sensitivity of the hydrolysis reaction to various structural parameters in the substrates indicates that hydrolysis occurs at the ester rather than the carbamate functionality. In plasma, the rates of hydrolysis correlate with partition coefficients, the most lipophilic compounds being the most stable. An aspirin derivative suffers two consecutive enzymatic reactions, the scission of the aspirin acetyl group being followed by the scission of the acyloxy ester group. These results indicate that triazene acyloxymethyl carbamates are prodrugs of the antitumour monomethyltriazenes. They combine chemical stability with a rapid enzymatic hydrolysis, and are consequently good candidates for further prodrug development. Moreover, this type of derivative allowed the synthesis of mutual prodrugs, associating the antitumour monomethyltriazenes with anti-inflammatory NSAIDs as well as with the anticancer agent butyric acid.
- Published
- 2000
18. Acyloxymethyl as a drug protecting group. Part 7: Tertiary sulfonamidomethyl ester prodrugs of benzylpenicillin: chemical hydrolysis and anti-bacterial activity
- Author
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Teresa Calheiros, Rui Moreira, Jim Iley, Francisca Lopes, and Helena Barroso
- Subjects
Carboxylic acid ,Clinical Biochemistry ,Pharmaceutical Science ,Microbial Sensitivity Tests ,Penicillins ,Biochemistry ,Chemical synthesis ,Benzylpenicillin ,Hydrolysis ,Anti-Infective Agents ,Drug Stability ,Drug Discovery ,polycyclic compounds ,medicine ,Organic chemistry ,Prodrugs ,Protecting group ,Molecular Biology ,Antibacterial agent ,chemistry.chemical_classification ,Sulfonamides ,Molecular Structure ,Chemistry ,Organic Chemistry ,Esters ,Penicillin G ,Hydrogen-Ion Concentration ,Prodrug ,Anti-Bacterial Agents ,Sulfonamide ,Kinetics ,Thermodynamics ,Molecular Medicine ,medicine.drug - Abstract
Tertiary sulfonamidomethyl esters of benzylpenicillin ( 4 ) were synthesised and evaluated as a new class of potential prodrugs for β-lactam antibiotics. Their hydrolysis in aqueous buffers was studied by HPLC and reveal a U-shaped pH–rate profile with a pH-independent process extending from ca. pH 2 to ca. pH 10. This pathway is characterised by kinetic data that are consistent with a unimolecular mechanism involving rate-limiting iminium ion formation and penicillinoate expulsion. Benzylpenicillin and the corresponding sulfonamide are the ultimate products detected and isolated, indicating that β-lactam ring opening is much slower than ester hydrolysis. As expected from the high reactivity, benzylpenicillin esters ( 4 ) displayed similar in vitro antibacterial activity to benzylpenicillin itself. Compared to the benzylpenicillin derivatives, sulfonamidomethyl esters of benzoic, clofibric and valproic acids display a much higher stability, giving rise to a Bronsted β lg value of −0.96 and suggesting that tertiary sulfonamidomethyl esters may be useful prodrugs for carboxylic acid drugs with p K a >4.
- Published
- 2000
19. [Untitled]
- Author
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Virgílio E. do Rosário, Rui Moreira, E Valente, Luís Constantino, Maria João Portela, João Pinto, Jim Iley, R. Rosa, and Pedro Cravo
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Pharmacology ,Dipeptide ,Primaquine ,Stereochemistry ,Metabolite ,Organic Chemistry ,Pharmaceutical Science ,Oxidative deamination ,Metabolism ,Biology ,Chemical synthesis ,Acylation ,chemistry.chemical_compound ,chemistry ,medicine ,Molecular Medicine ,Pharmacology (medical) ,Aliphatic compound ,Biotechnology ,medicine.drug - Abstract
Purpose. Dipeptide derivatives of primaquine (PQ) with reduced oxidative deamination to the inactive metabolite carboxypnmaquine were synthesized and evaluated as a novel class of transmission-blocking antimalarials.
- Published
- 1999
20. Kinetics and mechanism of acid hydrolysis of 1-methyl-1-nitroso-3-p-tolylsulfonylguanidine and 1-methyl-1-nitroso-3-benzoylguanidine
- Author
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Jim Iley, José A. Moreira, Fátima Norberto, Luis García-Río, and J. Ramón Leis
- Subjects
Hydrolysis constant ,chemistry.chemical_compound ,Nucleophile ,Chemistry ,Kinetic isotope effect ,Kinetics ,Organic chemistry ,Acid hydrolysis ,Protonation ,Nitroso ,Medicinal chemistry ,Catalysis - Abstract
Kinetics of acid hydrolysis of 1-methyl-1-nitroso-3-p-tolylsulfonylguanidine 2 and of two 1-methyl-1-nitroso-3-benzoylguanidines (4-unsubstituted and 4-chloro) 5 and 6 have been studied. For the acid hydrolysis of 1-methyl-1-nitroso-3-p-tolylsulfonylguanidine 2, the absence of catalysis by thiocyanate ion, and the value of the kinetic solvent isotope effect indicate that either a rate determining proton transfer followed by fast denitrosation or a concerted pathway is involved in the mechanism. In the case of the acid hydrolysis of 1-methyl-1-nitroso-3-benzoylguanidines 5 and 6 it was observed that the protonated form decomposes via two parallel pathways. One involves a slow nucleophilic attack concerted with an intramolecular proton transfer, and the other a slow concerted denitrosation, where a second proton transfer and NO+ expulsion are simultaneous.
- Published
- 1998
21. [Untitled]
- Author
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Jim Iley, Emilia Carvalho, Eduarda Rosa, and Maria de Jesus Perry
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Pharmacology ,chemistry.chemical_classification ,Chemistry ,Metabolite ,Organic Chemistry ,Pharmaceutical Science ,Prodrug ,Chemical synthesis ,Amino acid ,chemistry.chemical_compound ,Hydrolysis ,Molecular Medicine ,Organic chemistry ,Pharmacology (medical) ,Triazene ,Drug carrier ,Drug metabolism ,Biotechnology - Abstract
Purpose. The synthesis of chemically stable triazene prodrugs capable of hydrolysing under physiological conditions to liberate cytotoxic monomethyltriazene alkylating agents.
- Published
- 1998
22. [Untitled]
- Author
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Rui Moreira, Teresa Calheiros, Eduarda Mendes, and Jim Iley
- Subjects
Pharmacology ,Drug ,chemistry.chemical_classification ,media_common.quotation_subject ,Carboxylic acid ,Organic Chemistry ,Clofibric acid ,Pharmaceutical Science ,Probenecide ,Prodrug ,Chemical synthesis ,chemistry.chemical_compound ,Hydrolysis ,chemistry ,Molecular Medicine ,Organic chemistry ,Pharmacology (medical) ,Protecting group ,Biotechnology ,media_common - Abstract
Purpose. Novel tertiary amidomethyl esters were synthesized and evaluated as potential prodrugs of carboxylic acid agents.
- Published
- 1997
23. [Untitled]
- Author
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Rui Moreira, Eduarda Mendes, Teresa Calheiros, Jim Iley, Madalena Pimentel, and José Cabrita
- Subjects
Pharmacology ,chemistry.chemical_classification ,Carboxylic acid ,Organic Chemistry ,Pharmaceutical Science ,Prodrug ,Methyl benzoate ,Penicillin ,Hydrolysis ,chemistry.chemical_compound ,chemistry ,Amide ,medicine ,Molecular Medicine ,Organic chemistry ,Pharmacology (medical) ,Protecting group ,Biotechnology ,Antibacterial agent ,medicine.drug - Abstract
Purpose. O-(N-alkylamido)methyl esters of penicillin G were studied as a new class of prodrugs. Methods. Their hydrolysis in aqueous buffers containing 20 % (v/v) of acetonitrile was investigated by HPLC. Results. A U-shaped pH-rate profile was seen with a pH-independent process extending from pH ca. 2 to pH ca. 10. This pathway is characterised by kinetic data that are consistent with a uni-molecular mechanism involving rate-limiting iminium ion formation and penicillinoate expulsion. Penicillin G and the corresponding amide are the ultimate products detected and isolated, indicating that β-lactam ring opening is much slower than ester hydrolysis. The O-(N-alkylamido)methyl esters of penicillin G displayed similar in vitro antibacterial activity to penicillin G itself. Conclusions. Compared to the penicillin G derivatives, the much higher stability of the O-(N-methylbenzamido)methyl benzoate, acetate and valproate esters (which gave rise to a Bronsted βlg value of ca. -1) suggests that tertiary N-acyloxymethylamides may be useful prodrugs for carboxylic acid drugs with pKa >4.
- Published
- 1996
24. ChemInform Abstract: A New 3-(Ethoxycarbonylmethyl)isoxazolopyridone as a Precursor to Acylpyridones
- Author
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Georgia Loizou, Raymond C. F. Jones, and Jim Iley
- Subjects
chemistry.chemical_compound ,Nitrile ,Chemistry ,Organic chemistry ,General Medicine ,Cycloaddition - Abstract
Title compounds (VI) and (XVI) are synthesized starting from esters (I) or (XII), resp., via dipolar cycloaddition of nitrile oxides derived from the latter in situ with enamino-ester (III).
- Published
- 2012
25. N-Acyl and N-sulfonyloxazolidine-2,4-diones are pseudo-irreversible inhibitors of serine proteases
- Author
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Jim Iley, Henrique F. Correia, Rita C. Guedes, Ana Bela Santana, Teresa A.F. Cardote, Lídia Gonçalves, Rui Moreira, and Susana D. Lucas
- Subjects
Proteases ,Cathepsin G ,Serine Proteinase Inhibitors ,Human neutrophil ,Stereochemistry ,Swine ,Clinical Biochemistry ,Anti-Inflammatory Agents ,Pharmaceutical Science ,Inhibitory postsynaptic potential ,Biochemistry ,Serine ,Structure-Activity Relationship ,Drug Discovery ,Animals ,Humans ,Mode of action ,Molecular Biology ,Pancreatic elastase ,Oxazolidinones ,Cathepsin ,Pancreatic Elastase ,Chemistry ,Organic Chemistry ,Elastase ,Kinetics ,Molecular Medicine ,Leukocyte Elastase - Abstract
The synthesis, inhibitory activity and mode of action of oxazolidine-2,4-diones against porcine pancreatic elastase, here used as a model for human neutrophil elastase, are reported. The nature of N-substitution at the oxazolidine-2,4-dione scaffold has large effect on the inhibitory potency against elastase. N-Acyl and N-sulfonyloxazolidine-2,4-diones emerged as potent pseudo-irreversible inhibitors, displaying high second-order rate constants for PPE inactivation. The title compounds were also shown to be potent inhibitors of human neutrophil elastase (HNE) and proteinase-3, and weak inhibitors of human cathepsin G. The results herein presented show that the oxazolidine-2,4-diones represent a new promising class of serine protease inhibitors.
- Published
- 2011
26. ChemInform Abstract: A New Direct Synthesis of Tertiary N-Acyloxymethylamide Prodrugs of Carboxylic Acid Drugs
- Author
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Teresa Calheiros, Rui Moreira, Jim Iley, Maria J. Bacelo, and Eduarda Mendes
- Subjects
chemistry.chemical_classification ,chemistry.chemical_compound ,Aqueous medium ,chemistry ,Carboxylic acid ,Yield (chemistry) ,Organic chemistry ,General Medicine ,Carboxylate ,Prodrug ,Paraformaldehyde - Abstract
N-Alkyl-N-chloromethylamides 2, prepared from secondary amides, paraformaldehyde and chlorotrimethylsilane, react readily with carboxylate anions to generate the corresponding tertiary N-acyloxymethylamides 3 in good yield; the latter give rise to the parent carboxylic acids in aqueous media at pH 7.4 and 37 °C with half-lives between ca. 1 min and 42 h.
- Published
- 2010
27. NMR and ESR of sulphenic acids and their derivatives
- Author
-
Alan R. Bassindale and Jim Iley
- Subjects
Chemistry ,Organic chemistry ,Nuclear magnetic resonance spectroscopy - Published
- 2010
28. NMR and ESR of organosulphur compounds
- Author
-
Jim Iley and Alan R. Bassindale
- Subjects
Chemistry ,Inorganic chemistry ,Organic chemistry - Published
- 2010
29. Rational design, synthesis, biophysical and antiproliferative evaluation of fluorenone derivatives with DNA G-quadruplex binding properties
- Author
-
Francesco Ortuso, Francesco Trapasso, Stefano Alcaro, Raffaele Pasceri, Sotiris Missailidis, Claudia Sissi, Anna Artese, Francesco Paduano, Jim Iley, Lucia Parrotta, and Maria Gabriella Vigorita
- Subjects
Models, Molecular ,Molecular model ,Stereochemistry ,Antineoplastic Agents ,Biochemistry ,chemistry.chemical_compound ,Structure-Activity Relationship ,Morpholine ,Cell Line, Tumor ,Drug Discovery ,Side chain ,Moiety ,Humans ,Computer Simulation ,General Pharmacology, Toxicology and Pharmaceutics ,Databases, Protein ,Pharmacology ,Fluorenes ,Binding Sites ,Organic Chemistry ,Rational design ,DNA ,Telomere ,G-Quadruplexes ,chemistry ,Fluorenone ,Docking (molecular) ,Drug Design ,Molecular Medicine - Abstract
Molecular modeling studies carried out with experimental DNA models with the sequence d[AG(3)(T(2)AG(3))(3)] suggest that the introduction of a net positive charge onto the side chain of a series of fluorenone carboxamides can improve G-quadruplex binding. The terminal morpholino moiety was replaced with a novel N-methylmorpholinium cation starting from two 4-carboxamide compounds. A different substitution on the fluorenone ring was also investigated and submitted to the same quaternarization process. All compounds were analyzed for their DNA binding properties by competition dialysis methods. In vitro antiproliferative tests were carried out against two different tumor cell lines. Docking experiments were conducted by including all four known human repeat unit G-quadruplex DNA sequences (27 experimentally determined conformations) against the most active fluorenone derivatives. The results of theoretical, biophysical, and in vitro experiments indicate two novel derivatives as lead compounds for the development of a new generation of G-quadruplex ligands with greater potency and selectivity.
- Published
- 2010
30. Reaction of naphthoquinones with substituted nitromethanes. Facile synthesis and antifungal activity of naphtho[2,3- d]isoxazole-4,9-diones
- Author
-
Natália Faria, Rui Moreira, Simon J. Coles, Michael B. Hursthouse, Maria M. M. Santos, M. Luz Martins, Jim Iley, and Repositório da Universidade de Lisboa
- Subjects
Antifungal ,Bicyclic molecule ,medicine.drug_class ,Stereochemistry ,Organic Chemistry ,Clinical Biochemistry ,Quinones ,Pharmaceutical Science ,Microbial Sensitivity Tests ,Isoxazoles ,Heterocycles ,Biochemistry ,Chemical synthesis ,Quinone ,chemistry.chemical_compound ,chemistry ,Drug Discovery ,medicine ,Molecular Medicine ,Isoxazole ,Molecular Biology ,Antifungal agents ,Candida ,Naphthoquinones - Abstract
We report here a simple entry into naphtho[2,3-d]isoxazole-4,9-dione system containing a EWG in position 3 using the readily available 2,3-dichloro-1,4-naphthoquinone and nitromethyl derivatives in the presence of base. Antifungal activity of synthesised naphthoquinones was evaluated against ATCC and PYCC reference strains of Candida. The results suggest that the naphtho[2,3-d]isoxazole-4,9-dione scaffold has the potential to be developed into novel and safe therapeutic antifungal agents.
- Published
- 2010
31. A catalytic dipolar cycloaddition route to pyrroloimidazoles
- Author
-
Mark R. J. Elsegood, Maria Sanchis-Amat, Jim Iley, Raymond C. F. Jones, and Xiaohui Zhang
- Subjects
Chemistry ,Organic Chemistry ,Drug Discovery ,Organic chemistry ,Biochemistry ,Combinatorial chemistry ,Carbenoid ,Cycloaddition ,Catalytic method ,Catalysis - Abstract
A catalytic method involving carbenoid insertion onto dihydroimidazoles is reported for the generation of dihydroimidazolium ylides, and their subsequent diastereoselective cycloaddition to form pyrrolo[1,2-a]imidazoles.
- Published
- 2009
32. Synthesis of the pyoverdin chromophore by a biomimetic oxidative cyclization
- Author
-
Janet E. Smith, Simon J. Coles, Jim Iley, Sze Chak Yau, Mark R. J. Elsegood, James Dickson, Vickie McKee, and Raymond C. F. Jones
- Subjects
Models, Molecular ,Siderophore ,Oligopeptide ,Molecular Structure ,Organic Chemistry ,Quinoline ,Siderophores ,Nanotechnology ,Chromophore ,Biochemistry ,Fluorescence ,Combinatorial chemistry ,chemistry.chemical_compound ,chemistry ,Cyclization ,Reagent ,Pseudomonas ,Molecule ,Dehydrogenation ,Physical and Theoretical Chemistry ,Oligopeptides ,Oxidation-Reduction - Abstract
The fluorescent dihydropyrimido[1,2-a]quinoline chromophore of the pyoverdin siderophores has been synthesized by a biomimetic oxidative cyclization using an iodine(III) reagent, followed by elimination and dehydrogenation.
- Published
- 2009
33. Towards an efficient prodrug of the alkylating metabolite monomethyltriazene: Synthesis and stability of N-acylamino acid derivatives of triazenes
- Author
-
Maria de Jesus Perry, Jim Iley, Eduarda Rosa, and Emilia Carvalho
- Subjects
Pharmacology ,Alkylating Agents ,Spectrometry, Mass, Electrospray Ionization ,Organic Chemistry ,General Medicine ,Buffer solution ,Prodrug ,Chemical synthesis ,Combinatorial chemistry ,Acylation ,Kinetics ,chemistry.chemical_compound ,Hydrolysis ,chemistry ,Enzymatic hydrolysis ,Drug Discovery ,Humans ,Organic chemistry ,Prodrugs ,Triazenes ,Triazene ,Acyl group - Abstract
A series of 3-[alpha-(acylamino)acyl]-1-aryl-3-methyltriazenes 6a-l, potential cytotoxic triazene prodrugs, were synthesised by coupling 1-aryl-3-methyltriazenes to N-acylamino acids. Their hydrolysis was studied in isotonic pH 7.4 phosphate buffer and in human plasma, while hydrolysis of the derivative 6a was studied in more depth across a range of pH values. Prodrugs 6a-l hydrolyse by cleavage of the triazene acyl group to afford the corresponding monomethyltriazenes. Studies in human plasma demonstrate that acylation of the alpha-amino group of the amino acid carrier is an effective means of reducing the chemical reactivity of the alpha-aminoacyl derivatives while retaining a rapid rate of enzymatic hydrolysis. These derivatives displayed logP values that suggest they should be well absorbed through biological membranes.
- Published
- 2009
34. Dopamine- and tyramine-based derivatives of triazenes: activation by tyrosinase and implications for prodrug design
- Author
-
Ricardo Soares, Ana Varela Coelho, Ana Luísa Simplício, Rui Moreira, Eduarda Mendes, Jim Iley, Ana Paula Francisco, and M. Jesus Perry
- Subjects
Alkylation ,Stereochemistry ,Tyrosinase ,Dopamine ,Tyramine ,Chemical synthesis ,chemistry.chemical_compound ,Drug Stability ,Drug Discovery ,Humans ,Prodrugs ,Triazene ,Pharmacology ,chemistry.chemical_classification ,integumentary system ,Chemistry ,Monophenol Monooxygenase ,organic chemicals ,Organic Chemistry ,Biological activity ,General Medicine ,Prodrug ,Quinone ,Enzyme Activation ,Enzyme ,Drug Design ,Triazenes ,Agaricales - Abstract
A range of triazene derivatives were synthesized and investigated as prodrug candidates for melanocyte-directed enzyme prodrug therapy (MDEPT). The prodrugs contained a tyramine or dopamine promoiety required for tyrosinase activation and this was joined via a urea functional group to the cytotoxic triazene. The stability of each of the prodrugs in phosphate buffer, human plasma and in mushroom tyrosinase is discussed. The identification of the main peak formed after the tyrosinase reaction was attempted by LC-MS and the conversion of prodrug to the quinone was confirmed.
- Published
- 2008
35. Unanticipated acyloxymethylation of sumatriptan indole nitrogen atom and its implications in prodrug design
- Author
-
Tiago Rodrigues, Francisca Lopes, Rui Moreira, Jim Iley, Rita Guedes, and Repositório da Universidade de Lisboa
- Subjects
Indoles ,Chemistry, Multidisciplinary ,Pharmaceutical Science ,Chemistry, Medicinal ,Buffers ,Medicinal chemistry ,Methylation ,Hydrolysis ,Drug Stability ,Oral administration ,Drug Discovery ,medicine ,Organic chemistry ,Humans ,Prodrugs ,Pharmacology & Pharmacy ,Chromatography, High Pressure Liquid ,Indole test ,chemistry.chemical_classification ,Sumatriptan ,Prodrug ,Hydrogen-Ion Concentration ,musculoskeletal system ,Sulfonamide ,Bioavailability ,Serotonin Receptor Agonists ,chemistry ,Solubility ,Lipophilicity ,cardiovascular system ,medicine.drug - Abstract
Sumatriptan is a potent and selective 5-HT(1B) and 5-HT(1D )agonist used in the symptomatic treatment of migraine; it shows poor oral bioavailability ascribed, in part, to its low lipophilicity. In an attempt to develop acyloxymethyl prodrugs of sumatriptan suitable for oral administration, we carried out the reaction of sumatriptan with chloromethyl esters. To our surprise, acyloxymethylation occurred preferentially at the indole nitrogen rather than at sulfonamide nitrogen, reflecting a difference either in product stability or in the nucleophilicities of the indole and sulfonamide anions. The hydrolysis of the corresponding N(1)-acyloxymethyl derivatives was studied in aqueous buffers and in human plasma, by HPLC. N(1)-Acyloxymethyl derivatives of sumatriptan are rapidly hydrolysed to the chemically stable N(1)-hydroxymethylsumatriptan at pH 1-13. Slow formation of the parent drug was observed only at high pH values. Hydrolysis of sumatriptan derivatives is slower in human plasma than in phosphate buffer and also generates N(1)-hydroxymethylsumatriptan rather than the parent drug. These results indicate that N(1)-acyloxymethyl derivatives of sumatriptan cannot be considered as true prodrugs of sumatriptan.
- Published
- 2008
36. The 1,4-naphthoquinone scaffold in the design of cysteine protease inhibitors
- Author
-
Rita C. Guedes, Mohammed Jaffar, Jim Iley, Rui Moreira, Cláudia A. Valente, Kenneth T. Douglas, and Repositório da Universidade de Lisboa
- Subjects
Models, Molecular ,Proteases ,Biochemistry & Molecular Biology ,Stereochemistry ,Clinical Biochemistry ,Chemistry, Organic ,Pharmaceutical Science ,Chemistry, Medicinal ,Cysteine Proteinase Inhibitors ,Biochemistry ,Cathepsin B ,chemistry.chemical_compound ,Cathepsin O ,Drug Discovery ,Papain ,Cysteine ,Molecular Biology ,Cysteine metabolism ,Molecular Structure ,Pancreatic Elastase ,Chemistry ,Organic Chemistry ,Cysteine protease ,Naphthoquinone ,Molecular Medicine ,Naphthoquinones - Abstract
A series of 1,4-naphthoquinone derivatives diversely substituted at C-2, C-3, C-5 and C-8, prepared by reaction of amines, amino acids and alcohols with commercial 1,4-naphthoquinones, has been evaluated against papain and bovine spleen cathepsin B. These 1,4-naphthoquinone derivatives were found to be irreversible inhibitors for both cysteine proteases, with second-order rate constants, k(2), ranging from 0.67 to 35.4 M-1 s(-1) for papain, and from 0.54 to 8.03 M-1 s(-1) for cathepsin B. Some derivatives display a hyperbolic dependence of the first-order inactivation rate constant, k(obs) with the inhibitor concentration, indicative of a specific interaction process between enzyme and inhibitor. The chemical reactivity of the compounds towards cysteine as a model thiol is dependent on the naphthoquinone LUMO energy, whereas papain inactivation is not. The 1,4-naphthoquinone derivatives are inactive against the serine protease, porcine pancreatic elastase. (c) 2007 Elsevier Ltd. All rights reserved.
- Published
- 2007
37. Aminocarbonyloxymethyl ester prodrugs of flufenamic acid and diclofenac: suppressing the rearrangement pathway in aqueous media
- Author
-
Tomi Järvinen, Nuno Silva, Eduarda Mendes, Helder Mota-Filipe, Jarkko Rautio, Rui Moreira, Jim Iley, and Lina Ribeiro
- Subjects
Male ,Carbamate ,Diclofenac ,medicine.medical_treatment ,Carboxylic Acids ,Pharmaceutical Science ,Administration, Oral ,Biological Availability ,Phenylalanine ,Buffers ,Hydrolysis ,chemistry.chemical_compound ,Drug Stability ,Amide ,Drug Discovery ,medicine ,Organic chemistry ,Animals ,Prodrugs ,Rats, Wistar ,Chromatography, High Pressure Liquid ,chemistry.chemical_classification ,Molecular Structure ,Chemistry ,Anti-Inflammatory Agents, Non-Steroidal ,Water ,Esters ,Prodrug ,Hydrogen-Ion Concentration ,Amino acid ,Flufenamic Acid ,Rats ,Kinetics ,Flufenamic acid ,Lipophilicity ,medicine.drug - Abstract
Aminocarbonyloxymethyl ester prodrugs are known to undergo rearrangement in aqueous solutions to form the corresponding N-acylamine side product via an O--N intramolecular acyl transfer from the carbamate conjugate base. Novel aminocarbonyloxymethyl esters of diclofenac and flufenamic acid containing amino acid amide carriers were synthesized and evaluated as potential prodrugs displaying less ability to undergo rearrangement. These compounds were prepared in reasonable yield by a four-step synthetic method that uses the appropriate N-Boc-protected amino acid N-hydroxysuccinimide ester and secondary amine and chloromethyl chloroformate as key reactants. Their reactivity in pH 7.4 buffer and 80% human plasma at 37 degrees C was assessed by RP-HPLC. The aminocarbonyloxymethyl esters containing a secondary carbamate group derived from amino acids such as glycine or phenylalanine were hydrolyzed quantitatively to the parent drug both in non-enzymatic and enzymatic conditions, with no rearrangement product being detected. The oral bioavailability in rats was determined for selected diclofenac derivatives. These derivatives displayed a bioavailability of 25 to 68% relative to that of diclofenac, probably due to their poor aqueous solubility and lipophilicity. These results suggest that further optimization of aminocarbonyloxymethyl esters as potential prodrugs for non-steroidal anti-inflammatory drugs require the use of amino acid carriers with ionizable groups to improve aqueous solubility.
- Published
- 2007
38. Tetraplex DNA specific ligand based on the fluorenone-carboxamide scaffold
- Author
-
Stefano Alcaro, Anna Artese, Patricia A. Ragazzon, Francesco Ortuso, Rosanna Maccari, Maria Gabriella Vigorita, Jim Iley, Sotiris Missailidis, and Rosaria Ottanà
- Subjects
Molecular model ,Ultraviolet Rays ,Guanine ,Stereochemistry ,medicine.drug_class ,Chemistry, Pharmaceutical ,Clinical Biochemistry ,Molecular Conformation ,Fluorescence spectrometry ,Pharmaceutical Science ,Carboxamide ,Ligands ,Binding, Competitive ,Biochemistry ,chemistry.chemical_compound ,fluorenone-carboxamides ,DNA binding ,thermal denaturation ,UV spectroscopy ,competition dialysis ,fluorescence spectroscopy ,molecular modeling ,Drug Discovery ,medicine ,Molecular Biology ,Fluorenes ,Dose-Response Relationship, Drug ,Organic Chemistry ,Nucleic acid sequence ,Rational design ,DNA ,Telomere ,Carbon ,Kinetics ,Models, Chemical ,Fluorenone ,chemistry ,Drug Design ,Thermodynamics ,Molecular Medicine ,Spectrophotometry, Ultraviolet - Abstract
A series of fluorenone-carboxamide compounds was analyzed with regard to DNA binding properties by UV spectroscopy and competition dialysis methods. The morpholino derivative 10 provided interesting results in terms of affinity and specificity toward the DNA G-tetraplex structures. Interactions against this target were evaluated by a comparative molecular modeling study in agreement with the experimental data, proposing a model for the rational design of new agents with potent and selective DNA tetraplex binding properties.
- Published
- 2007
39. The efficiency of C-4 substituents in activating the beta-lactam scaffold towards serine proteases and hydroxide ion
- Author
-
Margarida Archer, Jalmira Mulchande, Rui Moreira, Tania F. Oliveira, Luísa M. D. R. S. Martins, Jim Iley, and Repositório da Universidade de Lisboa
- Subjects
Models, Molecular ,Swine ,Stereochemistry ,Chemistry, Organic ,Alkalies ,Crystallography, X-Ray ,beta-Lactams ,Biochemistry ,Acylation ,Serine ,Structure-Activity Relationship ,Tetrahedral carbonyl addition compound ,Hydroxides ,medicine ,Animals ,Monobactam ,Physical and Theoretical Chemistry ,Monobactams ,Pancreatic elastase ,Molecular Structure ,Pancreatic Elastase ,Chemistry ,Hydrolysis ,Organic Chemistry ,Elastase ,Leaving group ,Enzyme Activation ,Kinetics ,medicine.drug - Abstract
The presence of a leaving group at C- 4 of monobactams is usually considered to be a requirement for mechanism- based inhibition of human leukocyte elastase by these acylating agents. We report that second- order rate constants for the alkaline hydrolysis and elastase inactivation by N- carbamoyl monobactams are independent of the pK(a) of the leaving group at C- 4. Indeed, the effect exerted by these substituents is purely inductive: electron- withdrawing substituents at C- 4 of N- carbamoyl- 3,3- diethylmonobactams increase the rate of alkaline hydrolysis and elastase inactivation, with Hammett p(I) values of 3.4 and 2.5, respectively, which indicate the development of a negative charge in the transition- states. The difference in magnitude between these p(I) values is consistent with an earlier transition- state for the enzymatic reaction when compared with that for the chemical process. These results suggest that the rate- limiting step in elastase inactivation is the formation of the tetrahedral intermediate, and that beta- lactam ring- opening is not concerted with the departure of a leaving group from C- 4. Monobactam sulfones emerged as potent elastase inhibitors even when the ethyl groups at C- 3, required for interaction with the primary recognition site, are absent. For one such compound, a 1 : 1 enzyme - inhibitor complex involving porcine pancreatic elastase has been examined by X- ray crystallography and shown to result from serine acylation and sulfinate departure from the beta- lactam C-4.
- Published
- 2007
40. An alkylation route to carbo- and heteroaromatic amino acids
- Author
-
Jim Iley, Didier Jean-Claude Berthelot, and Raymond C. F. Jones
- Subjects
Biphenyl ,chemistry.chemical_classification ,Stereochemistry ,organic chemicals ,Organic Chemistry ,Alkylation ,Amino acid ,lcsh:QD241-441 ,chemistry.chemical_compound ,lcsh:Organic chemistry ,chemistry ,Amide ,Glycine ,Side chain ,heterocyclic compounds ,Enantiomeric excess - Abstract
Amino acids carrying aromatic carbo- and heterocycles in the side chain, such as naphthyl-, biphenyl- and pyridylalanines, have been prepared by alkylation of a glycine enolate with a haloalkyl carbocycle or heterocycle, with enantiomeric excess up to 87% using the ephedrine amide protocol.
- Published
- 2007
41. Intramolecular 1,3-Dipolar Cycloadditions of Dihydroimidazolium Ylides: Synthesis of Pyrrolo[1,2,3-de]quinoxalines and Imidazo[1,2-a]indoles
- Author
-
Michael B. Hursthouse, Jim Iley, Pedro M. J. Lory, Simon J. Coles, and Raymond C. F. Jones
- Subjects
Indole test ,chemistry.chemical_classification ,Steric effects ,Ketone ,Stereochemistry ,Organic Chemistry ,General Medicine ,Biochemistry ,Tautomer ,Medicinal chemistry ,Cycloaddition ,chemistry.chemical_compound ,Hydrolysis ,Quinoxaline ,chemistry ,Intramolecular force ,Physical and Theoretical Chemistry - Abstract
N-Alkylation of 4,5-dihydroimidazoles with alkene-containing bromomethyl ketones and treatment of the so-formed 4,5-dihydroimidazolium ions with DBU gives rise to an intramolecular 1,3-dipolar cycloaddition reaction that affords (via a reaction cascade involving eliminative ring-opening, recyclisation and prototropic tautomerism) unexpected hexahydropyrrolo[1,2,3-de]quinoxaline products. Steric bulk in both the dihydroimidazole and the dipolarophile allows isolation of an imidazo[1,2-a]indole, the initial product of cycloaddition. When the bromomethyl ketone contains no other functionality, or when cycloaddition is inhibited due to steric constraints, the dihydroimidazolium ion undergoes ring-opening hydrolysis followed by recyclization of the exposed amino ketone to afford either 3-alkyl-1-formylpiperazine-2-ones or 3-aryl-1-formyl-1,4,5,6-tetrahydropyrazines.
- Published
- 2006
42. Monofluorinated di- and tetrahydropyrans via Prins-type cyclisations
- Author
-
Sasa Martinovic, Mark J. Penny, Adrian P. Dobbs, Jim Iley, Peter T. Stephenson, and Levan Pivnevi
- Subjects
Chemistry ,Fluorine Compounds ,Metals and Alloys ,General Chemistry ,Fluorine ,Catalysis ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Cyclization ,Materials Chemistry ,Ceramics and Composites ,Organic chemistry ,Acids ,Range (computer programming) ,Pyrans - Abstract
The synthesis of a range of fluorinated heterocycles is described via a Lewis acid-mediated Prins-type cyclisation.
- Published
- 2006
43. Dipeptide vinyl sultams: synthesis via the Wittig-Horner reaction and activity against papain, falcipain-2 and Plasmodium falciparum
- Author
-
Rui Moreira, Cláudia A. Valente, Philip J. Rosenthal, Jiri Gut, Rita C. Guedes, and Jim Iley
- Subjects
Models, Molecular ,Stereochemistry ,Clinical Biochemistry ,Plasmodium falciparum ,Pharmaceutical Science ,Biochemistry ,Aldehyde ,Chemical synthesis ,chemistry.chemical_compound ,Antimalarials ,Drug Discovery ,Papain ,Animals ,Molecular Biology ,chemistry.chemical_classification ,Dipeptide ,biology ,organic chemicals ,Organic Chemistry ,Biological activity ,Dipeptides ,biology.organism_classification ,Phosphonate ,Cysteine Endopeptidases ,chemistry ,Wittig reaction ,Molecular Medicine - Abstract
The synthesis of phosphonate derivatives of N-phenyl- and N-benzyl-gamma- and delta-sultams, and their application in the Wittig-Horner reaction with N-Boc-L-phenylalanine aldehyde to afford E- and Z-isomers, are described. These compounds were further processed to provide five dipeptide vinyl sultams, which were found to be inactive against papain at concentrations up to 50 microM. In contrast, vinyl sultams demonstrated weak activity against recombinant falcipain-2 and Plasmodium falciparum W2.
- Published
- 2006
44. Reactivity of imidazolidin-4-one derivatives of primaquine: implications for prodrug design
- Author
-
Paula Chambel, Rui Moreira, Francisca Lopes, Paula Gomes, José R. B. Gomes, Rita Capela, Luís F. Gouveia, Jose Morais, Jim Iley, and Faculdade de Ciências
- Subjects
Steric effects ,chemistry.chemical_classification ,Química [Ciências exactas e naturais] ,010405 organic chemistry ,Stereochemistry ,Chemistry ,Organic Chemistry ,Protonation ,Química ,Prodrug ,010402 general chemistry ,01 natural sciences ,Biochemistry ,0104 chemical sciences ,Amino acid ,Hydrolysis ,Reaction rate constant ,Chemical sciences ,Chemical sciences [Natural sciences] ,Drug Discovery ,Reactivity (chemistry) ,Bond cleavage - Abstract
In contrast to peptide-based imidazolidin-4-ones, those synthesized from N-(alpha-aminoacyl) derivatives of the antimalarial drug, primaquine and ketones are unexpectedly stable in pH 7.4 at 37 degrees C. The kinetics of hydrolysis of primaquine-based imidazolidin-4-ones were investigated in the pH range 0.3-13.5 at 60 degrees C. The hydrolysis to the parent alpha-aminoacylprimaquine is characterized by sigmoidal-shaped pH-rate profiles, reflecting the spontaneous decomposition of both unionized and protonated (at N-1) forms of the imidazolidin-4-one. The kinetically determined pK(a) values are ca. 3.6-4.0, i.e., 4 pKa units lower than those of amino acid amides, thus implying that hydrolysis of imidazolidin-4-ones at pH 7.4 involves the unionized form. Reactivity of this form decreases with the steric crowding of the amino acid alpha-substituent. In contrast, the rate constant for the spontaneous decomposition of the unionized form increases sharply for imidazolidin-4-ones derived from cyclic ketones, an observation that can be explained by the I-strain (internal strain) effect. These results are consistent with a mechanism of hydrolysis involving an S(N)1-type unimolecular cleavage of the imidazolidin-4-one C2-N3 bond with departure of an amide-leaving group. The mechanism for the decomposition of the protonated imidazolidin-4-one is likely to involve an amide-carbonyl oxygen protonated species, followed by the C2-N3 bond scission, as supported by computational studies. The results herein presented suggest that imidazolidin-4-ones derived from simple N-alkyl alpha-aminoamides are too stable and therefore, may be useful as slow drug release prodrugs.
- Published
- 2006
45. The mechanism of hydrolysis of aryl ether derivatives of 3-hydroxymethyltriazenes
- Author
-
Ana Paula Francisco, Emilia Carvalho, Eduarda Rosa, Jim Iley, and Repositório da Universidade de Lisboa
- Subjects
Aryl ,Organic Chemistry ,Leaving group ,Chemistry, Organic ,Ether ,Protonation ,Nucleofuge ,Medicinal chemistry ,Catalysis ,Solvent ,Acid catalysis ,chemistry.chemical_compound ,chemistry ,Organic chemistry ,Physical and Theoretical Chemistry - Abstract
1-Aryl-3-aryloxymethyl-3-methyltriazenes hydrolyse to the corresponding anilines and phenols by specific-acid-catalysed, general-acid-catalysed and pH-independent mechanisms. All compounds studied exhibit specific- and general acid catalysis, though for 5a general acid catalysis was not observed below a pH of approximately 4, while for compounds 5e,f, such catalysis was absent above a pH of approximately 5. The pH-independent pathway is observed only for those compounds, 5d-f, that contain good aryloxy nucleo-fugic groups. The specific-acid-catalysed pathway is supported by a solvent deuterium isotope effect (SDIE) of 0.64, consistent with a mechanism involving protonation of the substrate followed by rate-determining unimolecular decomposition of the protonated species. The k(H+) values gave rise to a Hammett p value of -0.93, reflecting the competing effect of the substituents on the protonation of the substrate and the cleavage of the aryl ether. Correlation of k(H+) with the pK(a) of the phenol leaving group affords a beta(1g) of 0.3. Decomposition of the protonated intermediate proceeds via a triazenyliminium ion that can be trapped by methanol. The general-acid-catalysed process exhibits an SDIE of 1.43 and Hammett p values of 0.49, 0.84 and 1.0 for reactions catalysed by chloroacetic, formic and acetic acids, respectively. Correlation of k(A) with the pK(a) of the acid gave Bronsted a values that diminish from 0.6 for O-aryl systems that are poor nucleofuges (5a,b) to 0.2 for the best nucleofuge (5f), reflecting the different extents of proton transfer required to expel each phenol. Compounds containing powerful nucleofuges exhibit a pH-independent reaction that has an SDIE of 1.1, a Hammett p value of 3.4 and a Bronsted beta(1g) value of 1.4. These imply a mechanism involving displacement of the aryloxide leaving group to form a triazenyliminium ion intermediate that again was trapped as a methyl ether. ((c) Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2005)
- Published
- 2005
46. Kinetics and mechanism of hydrolysis of N-acyloxymethyl derivatives of azetidin-2-one
- Author
-
José R. B. Gomes, E Valente, Rui Moreira, Jim Iley, and Repositório da Universidade de Lisboa
- Subjects
Reaction mechanism ,Lactams ,Chemistry, Organic ,Protonation ,Medicinal chemistry ,Catalysis ,Acid catalysis ,Hydrolysis ,chemistry.chemical_compound ,Nucleophile ,Organic chemistry ,Enzyme Inhibitors ,Alkyl ,chemistry.chemical_classification ,Molecular Structure ,Organic Chemistry ,Iminium ,Hydrogen-Ion Concentration ,Kinetics ,chemistry ,Hydroxide ,Azetidines ,Imines ,Acids - Abstract
The pH-independent, acid-catalyzed and base-catalyzed hydrolyses of N-acyloxymethylazetidin-2-ones all occur at the ester function. The pH-independent hydrolysis involves rate-limiting alkyl C-O fission and formation of an exocyclic beta-lactam iminum ion. This iminium ion is then trapped by water at the exocyclic iminium carbon atom, rather than at the beta-lactam carbonyl carbon atom, to form the corresponding N-hydroxymethylazetidin-2-ones. Calculations carried out at the B3LYP/6-31+G(d) level of theory also support that nucleophilic attack by water takes place at the exocyclic carbon rather than at the beta-lactam carbonyl carbon of the iminium ion. The mechanism for the acid-catalyzed pathway involves a preequilibrium protonation, probably at the beta-lactam nitrogen, followed by rate-limiting alkyl C-O fission with formation of an exocyclic iminum ion. The base-catalyzed hydrolysis involves rate-limiting hydroxide attack at the ester carbonyl carbon. These results imply formation of a beta-lactam system containing a positively charged amide nitrogen atom that hydrolyzes via a pathway that preserves the beta-lactam structure in the product and provide further evidence that cleavage of the beta-lactam C-N bond is not as facile as is commonly imagined.
- Published
- 2004
47. Synthesis of some new 2-heterosubstituted 4,5-dihydroimidazoles
- Author
-
Raymond C. F. Jones, Pedro M. J. Lory, and Jim Iley
- Subjects
lcsh:QD241-441 ,lcsh:Organic chemistry ,Chemistry ,Organic Chemistry ,Heteroatom ,Combinatorial chemistry - Abstract
Several new 4,5-dihydroimidazoles (and the corresponding imidazolium salts) carrying heteroatom substituents at C-2 have been prepared from the corresponding tetrahydroimidazol-2-ones and/or -thiones.
- Published
- 2002
48. Design, synthesis and stability of N-acyloxymethyl- and N-aminocarbonyloxymethyl-2-azetidinones as human leukocyte elastase inhibitors
- Author
-
J. Neres, Alda Clemente, N. Palma, Jim Iley, A. P. Grancho, Ana Domingos, E Valente, Rui Moreira, A. B. Santana, and Repositório da Universidade de Lisboa
- Subjects
Models, Molecular ,Molecular model ,Stereochemistry ,Clinical Biochemistry ,Substituent ,Chemistry, Organic ,Pharmaceutical Science ,Chemistry, Medicinal ,Sensitivity and Specificity ,Biochemistry ,Chemical synthesis ,Sulfone ,chemistry.chemical_compound ,Drug Stability ,Drug Discovery ,Humans ,Enzyme Inhibitors ,Molecular Biology ,chemistry.chemical_classification ,biology ,Chemistry ,Organic Chemistry ,Active site ,Enzyme ,Enzyme inhibitor ,Drug Design ,biology.protein ,Lactam ,Azetidines ,Molecular Medicine ,Leukocyte Elastase - Abstract
A series of N-acyloxymethyl- and N-aminocarbonyloxymethyl derivatives of 2-azetidinones. 3, with different substituent patterns at the beta -lactam C-3 and C-4 positions, were designed as potential mechanism-based inhibitors for human leukocyte elastase and found to exhibit inhibitory potency and selectivity for the enzyme, (C) 2001 Elsevier Science Ltd. All rights reserved.
- Published
- 2001
49. N-acyloxymethyl- and N-[(aminocarbonyloxy)methyl]sulfonamides as prodrugs of agents containing a secondary sulfonamide group
- Author
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Jim Iley, Francisca Lopes, Rui Moreira, and Repositório da Universidade de Lisboa
- Subjects
chemistry.chemical_classification ,Biochemistry & Molecular Biology ,Aqueous solution ,Organic Chemistry ,Clinical Biochemistry ,Nitro compound ,Chemistry, Organic ,Pharmaceutical Science ,Chemistry, Medicinal ,Buffer solution ,Prodrug ,Biochemistry ,Chemical synthesis ,Sulfonamide ,chemistry.chemical_compound ,Hydrolysis ,chemistry ,Drug Discovery ,Molecular Medicine ,Organic chemistry ,Protecting group ,Molecular Biology - Abstract
Tertiary N-acyloxymethyl- and N-[(aminocarbonyloxy)methyl]sulfonamides were synthesised and evaluated as novel classes of potential prodrugs of agents containing a secondary sulfonamide group. The chemical and plasma hydrolyses of the title compounds were studied by HPLC. Tertiary N-acyloxymethylsulfonamides are slowly and quantitatively hydrolysed to the parent sulfonamide in pH 7.4 phosphate buffer, with half-lives ranging from 20 h, for 7d, to 30 days, for 7g. Quantitative formation of the parent sulfonamide also occurs in human plasma, the half-lives being within 0.2–2.0 min for some substrates. The rapid rate of hydrolysis can be ascribed to plasma cholinesterase, as indicated by the complete inhibition observed at [eserine]=0.10 mM. These results suggest that tertiary N-acyloxymethylsulfonamides are potentially useful prodrugs for agents containing a secondary sulfonamide group, especially with pKa 7h Download : Download high-res image (22KB) Download : Download full-size image Scheme 1 . (i) ClCH2OCOCl/Et3N/CH2Cl2; (ii) NaI/acetone; (iii) 5 (sodium salt)/THF. –j do not liberate the parent sulfonamide either in aqueous buffers or in human plasma and thus appear to be unsuitable for development as sulfonamide prodrugs.
- Published
- 2000
50. Phthalimidomethyl as a drug pro-moiety. Probing its reactivity
- Author
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Jim Iley, Teresa Calheiros, and Rui Moreira
- Subjects
Reaction mechanism ,Stereochemistry ,Clinical Biochemistry ,Pharmaceutical Science ,Phthalimides ,Biochemistry ,Phthalimide ,chemistry.chemical_compound ,Hydrolysis ,Structure-Activity Relationship ,Saccharin ,Drug Discovery ,Moiety ,Reactivity (chemistry) ,Prodrugs ,Imide ,Molecular Biology ,Molecular Structure ,Organic Chemistry ,Leaving group ,Prodrug ,Kinetics ,chemistry ,Molecular Medicine ,Indicators and Reagents - Abstract
Phthalimidomethyl derivatives 1, encompassing a wide range of leaving group abilities, are rapidly hydrolysed to the corresponding phthalamic acid via rate-determining attack at the phthalimide carbonyl group.
- Published
- 1999
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