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Since 2007, the ecosystem of the Gulf of Lions has shifted to a different regime, characterised by a low anchovy ( Engraulis encrasicolus) and sardine ( Sardina pilchardus) biomass and a remarkably high sprat ( Sprattus sprattus) biomass. Surprisingly, the abundance and recruitment of anchovy and sardine remained high. To understand which processes (bottom-up or top-down control, etc.) could have caused this shift, we studied the changes in body condition, growth and size and age of anchovy, sardine and sprat over 1984-1985 and 1992-2012, using data from scientific surveys. The annual age structure of anchovy and sardine was estimated using Bayesian mixture models based on size frequency data with priors on the age-length relationship derived from independent otolith readings. The results indicated periods during which anchovy and sardine were in an average (1992-2004), good (2005-2007) or poor (2008-2012) overall state of condition. For sardine, the shift towards smaller fish observed during these past 4 years was explained by a combination of slower growth and the disappearance of older individuals (ages 2+). Despite the increase in biomass of sprat since 2008, indications were found that sprat was also smaller than in the past. As growth and condition decreased and overexploitation has not been documented or suspected for those three species in this area, we propose that the current decline in sardine and anchovy biomass could be due to qualitative and/or quantitative modifications in the planktonic production (i.e. a bottom-up control) or mass mortalities of adults due to an epidemic disease. [ABSTRACT FROM AUTHOR]

Abstract: The recent overexploitation of East Atlantic and Mediterranean bluefin tuna stock has been well documented in the media where it has become the archetype of overfishing and general mis-management. Beyond the public debate, the crisis also highlighted how the interactions between science and management can change through time according to the awareness of the public opinion. To reflect these issues, the history of Atlantic bluefin tuna overfishing is first described. Then, the major uncertainties that undermine the current scientific advice are summarized and the importance of reducing their impacts by improving knowledge and developing robust scientific framework is considered. The study also discusses how uncertainty was used by different lobbies to discredit science-based management. The recent improvement in bluefin tuna stock status following the implementation of the rebuilding plan shows that, despite uncertainty in the scientific advice, the management of a heavily exploited fish stock can be positive when there is a political will. However, optimizing long-term yields of modern fisheries implies good science. The study concludes by advocating for the implementation of a scientific quota that should be part of the management framework to support the scientific advice. [Copyright &y& Elsevier]

Atlantic bluefin tuna ( ABFT) has always displayed spectacular changes in its spatial distribution, but the underlying mechanism of such variations still remains obscure. This study focuses on this challenging issue by scrutinizing the intriguing 'Brazilian episode' during which a large quantity of ABFT (a temperate species) was caught during the 1960s in the equatorial Atlantic. To investigate this event, we applied a niche model to an extensive data set of catch and environmental variables from 1960 to 2009. ABFT exhibited a remarkably large ecological niche, which matches well with our current knowledge of ABFT. Our results also depicted a high probability of ABFT occurrence in the South Atlantic and, more interestingly, favorable environmental conditions in the western equatorial Atlantic during the 1960s, but not later. ABFT could thus have migrated from their northern spawning grounds to the South Atlantic during the 1960s through the western equatorial Atlantic, playing the role of an 'ecological bridge'. We argue that the rarity of ABFT in the southern Atlantic during the last four decades would result from the interaction of several processes, particularly oceanographic conditions, migratory behavior, density-dependence, exploitation levels and population structure. Examination of the catch data further indicated that the fish caught in the equatorial Atlantic were from the western stock and we concluded that the lack of rebuilding of this stock could result from a regime shift due to the combination of oceanographic changes in the equatorial Atlantic and overfishing in the North Atlantic in the 1960s and 1970s. [ABSTRACT FROM AUTHOR]

A new test based on the generalized additive model is proposed to investigate density-dependent mortality in the juvenile cohorts of cod. Density dependence implies that the function linking the count of a cohort in one year to the count in the succeeding year is convex. The method estimates (without functional assumptions) the function linking the two counts and provides a level of significance for any convexity. We investigate the power and bias of the new test on the basis of simulated data. The power compares well with a test of unit slope in a log-log plot (although it is usually somewhat lower). However, in contrast to the latter method, the test for convexity is much more resistant to measurement error. We applied the model to long-term survey data from two areas of the Norwegian Skagerrak coast. In both cases, the variance is intermediate between the Gamma (variance proportional to the squared mean) and the Poisson (variance proportional to the mean) distributions. A negative binomial (with k [approximately] 3.5) describes the variance well. The variance is interpreted as resulting from sampling errors, spatial heterogeneity, and environmental stochasticity. Incorporating this error structure, the optimal models linking the two main juvenile stages are, for each area, nonlinear and significantly convex (P < 0.05). The full models are highly significant (P < 0.001), and the examination of the residuals does not reveal any remaining structure. We conclude that the survival of juvenile cod along the Norwegian Skagerrak coast is density dependent, probably because of cannibalism, competition for habitat, and food limitation. The functional form of density-dependence in the per capita survival rate is estimated to be approximately log-linear. Key words: age-structured interactions; cannibalism; competition; Gadus morhua; Gamma variance: Generalized Additive Model; negative binomial distribution; Norway; Poisson variance; stochastic population dynamics; time series analysis., INTRODUCTION Fish stocks are known to fluctuate extensively over large spatial and temporal scales (e.g., Laevastu 1993, Cushing 1995). The early stages in the life cycle are believed to be [...]

Aim The aims of this study were: (1) to identify global communities of tuna and billfish species through quantitative statistical analyses of global fisheries data; (2) to describe the spatial distribution, main environmental drivers and species composition of each community detected; and (3) to determine whether the spatial distribution of each community could be linked to the environmental conditions that affect lower trophic levels by comparing the partitions identified in this study with Longhurst's biogeochemical provinces. Location The global ocean from 60° S to 65° N. Methods We implemented a new numerical procedure based on a hierarchical clustering method and a nonparametric probabilistic test to divide the oceanic biosphere into biomes and ecoregions. This procedure was applied to a database that comprised standardized data on commercial longline catches for 15 different species of tuna and billfish over a period of more than 50 years (i.e. 1953-2007). For each ecoregion identified (i.e. characteristic tuna and billfish community), we analysed the relationships between species composition and environmental factors. Finally, we compared the biogeochemical provinces of Longhurst with the ecoregions that we identified. Results Tuna and billfish species form nine well-defined communities across the global ocean. Each community occurs in regions with specific environmental conditions and shows a distinctive species composition. High similarity (68.8% homogeneity) between the spatial distribution of the communities of tuna and billfish and the biogeochemical provinces suggests a strong relationship between these species and the physical and chemical characteristics of the global ocean. Main conclusions Despite their high tolerance for a wide range of environmental conditions, these highly migratory species are partitioned into clear geographical communities in the ocean at a global scale. The similarity between biogeochemical and biotic divisions in the ocean suggests that the global ocean is a mosaic of large biogeographical ecosystems, each characterized by specific environmental conditions that have a strong effect on the composition of the trophic web. [ABSTRACT FROM AUTHOR]

Focuses on the exploitation of the Atlantic bluefin tuna in the Mediterranean Sea. Increase in the efficiency of long-established fisheries; Details on the situation of the eastern stock of bluefin tuna; Assessment and management of eastern stock,.

Long-term time-series of bluefin tuna catches from ancestral Mediterranean and Atlantic trap fisheries are presented and analysed. The trap is a passive gear, little modified for centuries, that catches bluefin tuna Thunnus thynnus during their annual spawning migration. These features, together with preliminary analyses, lead us to suggest that long-term fluctuations in trap catches could reflect those in true abundance if they vary in the same manner all around the western Mediterranean and adjacent Atlantic. To test this hypothesis, we investigated 54 time-series more than 20 years long (the longest ones spanning four centuries) of trap catches along the western Mediterranean coasts of Italy, Sicily, Sardinia, Tunisia, Spain, and Morocco, and the adjacent Atlantic coasts of Spain, Portugal, and Morocco. Trends and cycles were identified using Eigen Vector Filtering and spectral analysis, and the synchrony between short- and long-term fluctuations in trap catches was studied with the modified correlogram of Koenig and Knops. The magnitude of fluctuations in trap catches is large, periods of great abundance being up to seven times bigger than those when abundance was low. More interesting was the occurrence of 100-year-long periodic fluctuations as well as 20-year cycles. These medium- to long-term fluctuations, representing more than 50% of the total variability in the time-series, were synchronous all around the western Mediterranean and adjacent North Atlantic. In contrast, short-term variability was synchronous at a local scale only. It is argued that long-term fluctuations in trap catches could be considered as a proxy for those of true abundance, and a synthetic time-series has been computed to depict them. Biological and ecological processes that could cause such long-term fluctuations are also discussed. [ABSTRACT FROM PUBLISHER]

Time series of 0- and 1-group cod sampled in the period 1919 to 1994 at 38 stations along the Norwegian Skagerrak coast were investigated using spatial and temporal analyses. Both groups displayed similar spatial structure and had similar spatial distributions. Spatial heterogeneity occurred on a mesoscale (differences between fjords) and on a local scale (both groups significantly more abundant at sheltered stations in the inner fjord). Temporal fluctuations exhibiting a cyclic component at around 2–2.5 years were spatially structured on a local scale. The cycle in abundance appears to be a result of biotic interaction, such as competition for space and food and/or cannibalism between cohorts. Similar long-term trends were also observed, although those for the 0-group were more pronounced. In contrast to the 2–2.5 years' cycle, long-term trends were related to events taking place on a scale equal to or larger than the Norwegian Skagerrak. The causes of these fluctuations are complex and probably result from factors such as biotic interactions, changes in seagrass coverage, and fishing. [ABSTRACT FROM PUBLISHER]

• Rhone river nutrients concentrations significantly decreased since 1990. • Rhone river inputs are the main driver of Chl- a in the Gulf of Lions shelf area. • Changes were observed in the environment and small pelagic fish population in mid 2000s. • Small pelagic community and environmental system of the Gulf of Lions presented the same patterns of variation. An important decrease in small pelagic fish condition and size has been observed in the most productive ecosystem of the Mediterranean Sea, the Gulf of Lions, since 2008, leading to an important fishery crisis. Previous studies suggested bottom-up control to be the most probable cause for these changes. Here, we investigate whether an environmental change might have caused such a situation. In the absence of zooplankton time series, this study aims at describing temporal changes in key abiotic factors for the planktonic and fish production of the Gulf of Lions, such as SST, meso-scale fronts, wind-induced coastal upwelling, river discharge, water stratification and deep convection and then at understanding potential link on Chl- a concentration as well as small pelagic fish populations. Our results indicate that the environmental conditions have broadly changed in the Gulf of Lion, with a major change in the mid-2000s, affecting the Chla concentration (which showed a regime shift in 2007), but also the SST, the upwelling and frontal activities, the Rhone river discharge (and particularly the N and P nutrients inputs) as well as the deep winter convection. Those changes could have affected the plankton production and consequently the small pelagic fish community that displayed similar patterns of variations as the environmental conditions. [ABSTRACT FROM AUTHOR]

The commercially important Atlantic bluefin tuna (Thunnus thynnus), a large migratory fish, has experienced notable recovery aided by accurate resource assessment and effective fisheries management efforts. Traditionally, this species has been perceived as consisting of eastern and western populations, spawning respectively in the Mediterranean Sea and the Gulf of Mexico, with mixing occurring throughout the Atlantic. However, recent studies have challenged this assumption by revealing weak genetic differentiation and identifying a previously unknown spawning ground in the Slope Sea used by Atlantic bluefin tuna of uncertain origin. To further understand the current and past population structure and connectivity of Atlantic bluefin tuna, we have assembled a unique dataset including thousands of genome‐wide single‐nucleotide polymorphisms (SNPs) from 500 larvae, young of the year and spawning adult samples covering the three spawning grounds and including individuals of other Thunnus species. Our analyses support two weakly differentiated but demographically connected ancestral populations that interbreed in the Slope Sea. Moreover, we also identified signatures of introgression from albacore (Thunnus alalunga) into the Atlantic bluefin tuna genome, exhibiting varied frequencies across spawning areas, indicating strong gene flow from the Mediterranean Sea towards the Slope Sea. We hypothesize that the observed genetic differentiation may be attributed to increased gene flow caused by a recent intensification of westward migration by the eastern population, which could have implications for the genetic diversity and conservation of western populations. Future conservation efforts should consider these findings to address potential genetic homogenization in the species. [ABSTRACT FROM AUTHOR]

A response by Jean-Marc Fromentin to a letter to the editor about his letter “The Fate of Atlantic Bluefin Tuna” in the March 12, 2010 issue is presented.

To limit climate warming to 2°C above preindustrial levels, most economic sectors will need a rapid transformation toward a net zero emission of CO2. Tuna fisheries is a key food production sector that burns fossil fuel to operate but also reduces the deadfall of large‐bodied fish so the capacity of this natural carbon pump to deep sea. Yet, the carbon balance of tuna populations, so the net difference between CO2 emission due to industrial exploitation and CO2 sequestration by fish deadfall after natural mortality, is still unknown. Here, by considering the dynamics of two main contrasting tuna species (Katsuwonus pelamis and Thunnus obesus) across the Pacific since the 1980s, we show that most tuna populations became CO2 sources instead of remaining natural sinks. Without considering the supply chain, the main factors associated with this shift are exploitation rate, transshipment intensity, fuel consumption, and climate change. Our study urges for a better global ocean stewardship, by curbing subsidies and limiting transshipment in remote international waters, to quickly rebuild most pelagic fish stocks above their target management reference points and reactivate a neglected carbon pump toward the deep sea as an additional Nature Climate Solution in our portfolio. Even if this potential carbon sequestration by surface unit may appear low compared to that of coastal ecosystems or tropical forests, the ocean covers a vast area and the sinking biomass of dead vertebrates can sequester carbon for around 1000 years in the deep sea. We also highlight the multiple co‐benefits and trade‐offs from engaging the industrial fisheries sector with carbon neutrality. [ABSTRACT FROM AUTHOR]

Sardine populations worldwide can fluctuate drastically over short time periods, in terms of both biomass and biological characteristics. Fluctuations might be amplified by pathogens, but such hypotheses have never been considered in the absence of clear macroscopic symptoms. In the Gulf of Lions (NW Mediterranean), an enduring severe decrease in sardine ( Sardina pilchardus) size, condition and age has been observed since 2008, resulting in a strong decline in landings. This situation might have been caused or aggravated by diseases, especially as other drivers such as fisheries are not expected to be important. Therefore, we developed and performed a general veterinary study, aimed at detecting a wide range of potential pathogens, including parasites, viruses and bacteria. We explored which infectious agents are most likely to produce a causal relationship with sardine health, important information for future infection experiments. Among about 1300 sardines sampled during June 2014-July 2015, microscopic parasites (often trematodes and coccidians) and bacteria Tenacibaculum and Vibrio spp. were found. However, no clear damage to tissue was observed and there was generally no link between the agents' presence and host size or condition, so that no strong indications of pathogenicity were present. Nonetheless, 54 % of the sardines analysed in 2015 had elevated quantities of melano-macrophage centres (macrophage aggregates), indicating stress on the fish that might potentially be related to starvation and/or pollution. [ABSTRACT FROM AUTHOR]

Pop-up archival tags (PAT) provide summary and high-resolution time series data at predefined temporal intervals. The limited battery capabilities of PATs often restrict the transmission success and thus temporal coverage of both data products. While summary data are usually less affected by this problem, as a result of its lower size, it might be less informative. We here investigate the accuracy and feasibility of using temperature at depth summary data provided by PATs to describe encountered oceanographic conditions. Interpolated temperature at depth summary data was found to provide accurate estimates of three major thermal water column structure indicators: thermocline depth, stratification and ocean heat content. Such indicators are useful for the interpretation of the tagged animal's horizontal and vertical behaviour. The accuracy of these indicators was found to be particularly sensitive to the number of data points available in the first 100 m, which in turn depends on the vertical behaviour of the tagged animal. Based on our results, we recommend the use of temperature at depth summary data as opposed to temperature time series data for PAT studies; doing so during the tag programming will help to maximize the amount of transmitted time series data for other key data types such as light levels and depth. [ABSTRACT FROM AUTHOR]

This study evaluates the relationship between both commercial and scientific spatial fisheries data and a new satellite‐based estimate of potential fish production (Ocean Productivity available to Fish, OPFish) in the European Seas. To construct OPFish, we used productivity frontal features derived from chlorophyll‐a horizontal gradients, which characterize 10%–20% of the global phytoplankton production that effectively fuels higher trophic levels. OPFish is relatively consistent with the spatial distribution of both pelagic and demersal fish landings and catches per unit of effort (LPUEs and CPUEs, respectively). An index of harvest relative to ocean productivity (HP index) is calculated by dividing these LPUEs or CPUEs with OPFish. The HP index reflects the intensity of fishing by gear type with regard to local fish production. Low HP levels indicate lower LPUEs or CPUEs than expected from oceanic production, suggesting over‐exploitation, while high HP levels imply more sustainable fishing. HP allows comparing the production‐dependent suitability of local fishing intensities. Our results from bottom trawl data highlight that over‐exploitation of demersal species from the shelves is twice as high in the Mediterranean Sea than in the North‐East Atlantic. The estimate of HP index by dominant pelagic and demersal gears suggests that midwater and bottom otter trawls are associated with the lowest and highest overfishing, respectively. The contrasts of fishing intensity at local scales captured by the HP index suggest that accounting for the local potential fish production can promote fisheries sustainability in the context of ecosystem‐based fisheries management as required by international marine policies. [ABSTRACT FROM AUTHOR]

Global warming is causing profound modifications of aquatic ecosystems and one major outcome appears to be a decline in adult size of many fish species. Over the last decade, sardine populations in the Gulf of Lions (NW Mediterranean Sea) have shown severe declines in body size and condition as well as disappearance of the oldest individuals, which could not be related to overfishing, predation pressure or epizootic diseases.In this study, we investigated whether this situation reflects a bottom‐up phenomenon caused by reduced size and availability of prey that could lead to energetic constraints. We fed captive sardines with food items of two different sizes eliciting a change in feeding mode (filter‐feeding on small items and directly capturing larger ones) at two different rations for several months, and then assessed their muscle bioenergetics to test for changes in cellular function.Feeding on smaller items was associated with a decline in body condition, even at high ration, and almost completely inhibited growth by comparison to sardines fed large items at high ration.Sardines fed on small items presented specific mitochondrial adjustments for energy sparing, indicating a major bioenergetic challenge. Moreover, mitochondria from sardines in poor condition had low basal oxidative activity but high efficiency of ATP production. Notably, when body condition was below a threshold value of 1.07, close to the mean observed in the wild, it was directly correlated with basal mitochondrial activity in muscle.The results show a link between whole‐animal condition and cellular bioenergetics in the sardine, and reveal physiological consequences of a shift in feeding mode. They demonstrate that filter‐feeding on small prey leads to poor growth, even under abundant food and an increase in the efficiency of ATP production. These findings may partially explain the declines in sardine size and condition observed in the wild. [ABSTRACT FROM AUTHOR]

Atlantic bluefin tuna (ABFT) is a migratory species whose exploitation is affected by its migratory behaviour. ABFT can be found the whole year round in the Gulf of Lions (GoL), with the exception of the May/June/July spawning season. The date at which ABFT fishing resumes in the GoL after spawning is variable and affects both the summer longline fishery and the local aerial survey used to derive a fisheries‐independent index of abundance used in the stock assessment. We investigated whether environmental conditions could explain inter‐annual variability in ABFT availability in the GoL. We focused on Sea surface temperature (SST) and northern wind events looking at changes in the ABFT summer longline fishery start date and quota completion date. Years with weaker northern wind events displayed a higher SST and were associated with a delay in ABFT catch by up to more than one month, whereas the bulk of the catch was completed earlier. A scale‐dependent analysis of the densities of ABFT schools detected during the aerial survey show consistent associations between the short‐term fluctuations in northern wind and SST and the densities of ABFT schools detected. When considering the trends these effects appeared reversed, higher SST and weaker northern wind being associated with an increase in ABFT school density. The implication of these results on the aerial survey and for the exploitation and conservation of ABFT are discussed in the light of the literature on its migratory behaviour in the context of climate change. [ABSTRACT FROM AUTHOR]

Anticipating future changes in marine social‐ecological systems (MSES) several decades into the future is essential in the context of accelerating global change. This is challenging in situations where actors do not share common understandings, practices, or visions about the future. We introduce a dedicated scenario method for the development of MSES scenarios in a participatory context. The objective is to allow different actors to jointly develop scenarios which contain their multiple visions of the future. The method starts from four perspectives: "fisheries management," "ecosystem," "ocean climate," and "global context and governance" for which current status and recent trends are summarized. Contrasted scenarios about possible futures are elaborated for each of the four single perspectives before being integrated into multiple‐perspective scenarios. Selected scenarios are then developed into storylines. Focusing on individual perspectives until near the end allows actors with diverse cultures, interests and horizons to confront their own notions of the future. We illustrate the method with the exploration of the futures of the Barents Sea MSES by 2050. We emphasize the following lessons learned: first, many actors are not familiar with scenario building and attention must be paid to explaining the purpose, methodology, and benefits of scenarios exercises. Second, although the Barents Sea MSES is relatively well understood, uncertainties about its future are significant. Third, it is important to focus on unlikely events. Fourth, all perspectives should be treated equally. Fifth, as MSES are continuously changing, we can only be prepared for future changes if we collectively keep preparing. [ABSTRACT FROM AUTHOR]

Abstract Around 2008, an ecosystem shift occurred in the Gulf of Lions, highlighted by considerable changes in biomass and fish mean weight of its two main small pelagic fish stocks (European anchovy, Engraulis encrasicolus ; European sardine, Sardina pilchardus). Surprisingly these changes did not appear to be mediated by a decrease in fish recruitment rates (which remained high) or by a high fishing pressure (exploitation rates being extremely low). Here, we review the current knowledge on the population's dynamics and its potential causes. We used an integrative ecosystem approach exploring alternative hypotheses, ranging from bottom-up to top-down control, not forgetting epizootic diseases. First, the study of multiple population characteristics highlighted a decrease in body condition for both species as well as an important decrease in size resulting from both a slower growth and a progressive disappearance of older sardines. Interestingly, older sardines were more affected by the decrease in condition than younger ones, another sign of an unbalanced population structure. While top-down control by bluefin tuna or dolphins, emigration and disease were mostly discarded as important drivers, bottom-up control mediated by potential changes in the plankton community appeared to play an important role via a decrease in fish energy income and hence growth, condition and size. Isotopic and stomach content analyses indicated a dietary shift pre- and post-2008 and modeled mesozooplankton abundance was directly linked to fish condition. Despite low energy reserves from 2008 onwards, sardines and anchovies maintained if not increased their reproductive investment, likely altering the life-history trade-off between reproduction and survival and resulting in higher natural mortality. The current worrying situation might thus have resulted from changes in plankton availability/diversity, which remains to be thoroughly investigated together with fish phenotypic plasticity. [ABSTRACT FROM AUTHOR]

Many highly mobile species are known to use persistent pathways or corridors to move between habitat patches in which conditions are favorable for particular activities, such as breeding or foraging. In the marine realm, environmental variability can lead to the development of temporary periods of anomalous oceanographic conditions that can connect individuals to areas of habitat outside a population's usual range, or alternatively, restrict individuals from areas usually within their range, thus acting as ecological bridges or ecological barriers . These temporary features can result in novel or irregular trophic interactions and changes in population spatial dynamics, and, therefore, may have significant implications for management of marine ecosystems. Here, we provide evidence of ecological bridges and barriers in different ocean regions, drawing upon five case studies in which particular oceanographic conditions have facilitated or restricted the movements of individuals from highly migratory species. We discuss the potential population-level significance of ecological bridges and barriers, with respect to the life history characteristics of different species, and inter- and intra-population variability in habitat use. Finally, we summarize the persistence of bridge dynamics with time, our ability to monitor bridges and barriers in a changing climate, and implications for forecasting future climate-mediated ecosystem change. [ABSTRACT FROM AUTHOR]

Overexploitation and climate change are increasingly causing unanticipated changes in marine ecosystems, such as higher variability in fish recruitment and shifts in species dominance. An ecosystem-based approach to fisheries attempts to address these effects by integrating populations, food webs and fish habitats at different scales. Ecosystem models represent indispensable tools to achieve this objective. However, a balanced research strategy is needed to avoid overly complex models. Ecosystem oceanography represents such a balanced strategy that relates ecosystem components and their interactions to climate change and exploitation. It aims at developing realistic and robust models at different levels of organisation and addressing specific questions in a global change context while systematically exploring the ever-increasing amount of biological and environmental data. [Copyright &y& Elsevier]

Examines the ecological response to climatic change. Rate of warming over a period of time; Phenology on the timing of seasonal activities for animals and plants; Factors controlling autumn phenology.

Animal mortality is difficult to observe in marine systems, preventing a mechanistic understanding of major drivers of fish population dynamics. In particular, starvation is known to be a major cause of mortality at larval stages, but adult mortality is often unknown. In this study, we used a laboratory food-deprivation experiment, on wild caught sardine Sardina pilchardus from the Gulf of Lions. This population is interesting because mean individual phenotype shifted around 2008, becoming dominated by small, young individuals in poor body condition, a phenomenon that may result from declines in energy availability. Continuous monitoring of body mass loss and metabolic rate in 78 captive food-deprived individuals revealed that sardines could survive for up to 57 days on body reserves. Sardines submitted to long-term caloric restriction prior to food-deprivation displayed adaptive phenotypic plasticity, reducing metabolic energy expenditure and enduring starvation for longer than sardines that had not been calorie-restricted. Overall, entry into critical fasting phase 3 occurred at a body condition of 0.72. Such a degree of leanness has rarely been observed over 34 years of wild population monitoring. Still, the proportion of sardines below this threshold has doubled since 2008 and is maximal in January and February (the peak of the reproductive season), now reaching almost 10 % of the population at that time. These results indicate that the demographic changes observed in the wild may result in part from starvation-related adult mortality at the end of the winter reproductive period, despite adaptive plastic responses. • Laboratory fasting experiment informs about natural mortality in the wild. • Sardines reduce their metabolic energy expenditures to endure long fasting. • Calorie-restricted sardines display better phenotypic plasticity to face fasting. • Entry into critical fasting phase 3 occurred at a body condition of 0.72 • Sardines in critical condition represent now ~10 % of the population in the wild. [ABSTRACT FROM AUTHOR]

Human activities and climate change have negatively affected the world's oceans, leading to a decline of 30 to 60 % in coastal ecosystems' biodiversity and habitats. The projected increase in the human population to 9.7 billion by 2050 raises concerns about the sustainability of marine ecosystem conservation and exploitation. Marine turtles, as sentinel species, accumulate contaminants, including trace elements, due to their extensive migration and long-life span. However, there is a lack of data on the degree of contamination and their effects on marine turtles' health. This study focuses on assessing in-situ inorganic contamination in juvenile green sea turtles from La Réunion Island and its short-term impact on individual health, using conventional biomarkers and proteomics. The goals include examining contamination patterns in different tissues and identifying potential new biomarkers for long-term monitoring and conservation efforts. The study identified differential metal contamination between blood and scute samples, which could help illuminate temporal exposure to trace elements in turtle individuals. We also found that some conventional biomarkers were related to trace element exposure, while the proteome responded differently to various contaminant mixtures. Immune processes, cellular organization, and metabolism were impacted, indicating that contaminant mixtures in the wild would have an effect on turtle's health. Fifteen biomarker candidates associated with strong molecular responses of sea turtle to trace element contamination are proposed for future long-term monitoring. The findings emphasize the importance of using proteomic approaches to detect subtle physiological responses to contaminants in the wild and support the need for non-targeted analysis of trace elements in the biomonitoring of sea turtle health., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)

The increase in trace element concentrations in the aquatic environment due to anthropogenic activities, urges the need for their monitoring and potential toxicity, persistence, bioaccumulation, and biomagnification at different trophic levels. Gilthead seabream is a species of commercial importance in the Mediterranean Sea, both for the aquaculture and fisheries sectors, however very little is known about their trace element contamination accumulation and the resulting effect on their health status. In the present study, 135 juveniles were collected from seven coastal lagoons known to be essential nursery areas for this species. We measured seventeen different inorganic contaminants at the individual level in fish muscle (namely Al, As, Be, Bi, Cd, Cr, Cu, Hg, Li, Ni, Pb, Rb, Sb, Sr, Ti, Tl and Zn). Our results revealed the accumulation of multiple trace elements in individuals and distinct contamination signatures between lagoons which might lead to contrasted quality as nurseries for juveniles of numerous ecologically and economically relevant fish species in addition to seabreams. We further evaluated the potential adverse effect of these complex contamination mixtures on the liver (the main organ implicated in the metabolism of xenobiotics) and red muscle (a highly metabolic organ) using a proteomic approach. Alterations in cellular organization pathways and protein transport were detected in both tissues (albeit they were not similarly regulated). Chromosome organization and telomere maintenance in the liver appeared to be affected by contaminant mixture which could increase mortality, age-related disease risk and shorter lifetime expectancy for these juveniles. Red muscle proteome also demonstrated an upregulation of pathways involved in metabolism in response to contamination which raises the issue of potential energy allocation trade-offs between the organisms' main functions such as reproduction and growth. This study provides new insights into the cellular and molecular responses of seabreams to environmental pollution and proposed biomarkers of health effects of trace elements that could serve as a starting point for larger-scale biomonitoring programs., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Ltd. All rights reserved.)

Studies of the diet, feeding habits and trophic activity of top marine predators are essential for understanding their trophodynamics. The main direct method used for such studies thus far has been morphological inventories of stomach contents. This approach presents limitations such as missing gelatinous prey, which are usually digested too quickly to be detectable. Here, we analysed the stomachs of 48 Atlantic bluefin tuna ( Thunnus thynnus, approximately 15 to 60 kg, including juveniles and adult fishes) collected from the Mediterranean Sea through the metabarcoding of two gene regions (cytochrome c oxidase subunit I (COI) and the ribosomal 18S-V1V2 region). The identified prey taxa and their relative read abundances (RRAs) estimated using COI results were in line with the findings of morphologically based inventories simultaneously performed on the same set of tuna samples. In both cases (and with the same rankings), the prey taxa included anchovy ( Engraulis encrasicolus, here detected in more than 80% of samples, RRA = 43%), sardine ( Sardina pilchardus, also approximately 80%, RRA = 30%), sprat ( Sprattus sprattus, approximately 66%, RRA = 8%), mackerel ( Scomber colias, approximately 44%, RRA = 7%) and cephalopods (approximately 15%, RRA = 1.4%). Another striking result was the detection, based on 18S (with which vertebrates were detected as the most abundant group, RRA = 61.6%), of a high prevalence and diversity of gelatinous organisms (RRA = 27.1%), including cnidarians (6.7%), salps (11.7%), and ctenophores (8.7%), the latter increasing with the size of the predator. These results thus support the hypothesis of the role of gelatinous prey in the diet of Atlantic bluefin tuna, suggesting that this species is even more generalist and opportunistic than previously thought. This study further confirms that DNA metabarcoding can be a powerful tool for assessing the diet and trophodynamics of top marine predators., Competing Interests: The authors declare there are no competing interests., (©2021 Günther et al.)

This study investigates the association between an index of mesozooplankton biomass, derived from the Continuous Plankton Recorder survey and satellite-derived productivity fronts in the North Atlantic. While chlorophyll-a content (CHL) is commonly described as a proxy for phytoplankton biomass, the size of productivity fronts estimated from the horizontal gradient of CHL appears to be directly linked to mesozooplankton biomass. Our results suggest that the lifespan of productivity fronts, which ranges from weeks to months, meets the time requirement of mesozooplankton to develop. The proposed indicator describes the daily distribution of mesozooplankton's suitable feeding habitat. It also provides a coherent interpretation of the productivity front development with respect to phytoplankton activity (CHL values) and potential predation by higher trophic levels. Since mesozooplankton are essential for feeding at higher trophic levels, this satellite-derived indicator delivers essential information for research and policy. An unanticipated positive trend of the indicator from 2003 to 2017 is observed at a basin scale under the current effects of climate change, with regional peaks in relatively poorly productive areas. Such monitoring indicator is potentially important to advances in marine food web modelling, fisheries science and the dynamic management of oceans towards sustainability.

Limited resources in the environment prevent individuals from simultaneously maximizing all life-history traits, resulting in trade-offs. In particular, the cost of reproduction is well known to negatively affect energy investment in growth and maintenance. Here, we investigated these trade-offs during contrasting periods of high versus low fish size and body condition (before/after 2008) in the Gulf of Lions. Female reproductive allocation and performance in anchovy ( Engraulis encrasicolus ) and sardine ( Sardina pilchardus ) were examined based on morphometric historical data from the 1970s and from 2003 to 2015. Additionally, potential maternal effects on egg quantity and quality were examined in 2014/2015. After 2008, the gonadosomatic index increased for sardine and remained steady for anchovy, while a strong decline in mean length at first maturity indicated earlier maturation for both species. Regarding maternal effects, for both species egg quantity was positively linked to fish size but not to fish lipid reserves, while the egg quality was positively related to lipid reserves. Atresia prevalence and intensity were rather low regardless of fish condition and size. Finally, estimations of total annual numbers of eggs spawned indicated a sharp decrease for sardine since 2008 but a slight increase for anchovy during the last 5 years. This study revealed a biased allocation towards reproduction in small pelagic fish when confronted with a really low body condition. This highlights that fish can maintain high reproductive investment potentially at the cost of other traits which might explain the present disappearance of old and large individuals in the Gulf of Lions.

Different dolphin and tuna species have frequently been reported to aggregate in areas of high frontal activity, sometimes developing close multi-species associations to increase feeding success. Aerial surveys are a common tool to monitor the density and abundance of marine mammals, and have recently become a focus in the search for methods to provide fisheries-independent abundance indicators for tuna stock assessment. In this study, we present first density estimates corrected for availability bias of fin whales (Balaenoptera physalus) and striped dolphins (Stenella coeruleoalba) from the Golf of Lions (GoL), compared with uncorrected estimates of Atlantic bluefin tuna (ABFT; Thunnus thynnus) densities from 8 years of line transect aerial surveys. The raw sighting data were further used to analyze patterns of spatial co-occurrence and density of these three top marine predators in this important feeding ground in the Northwestern Mediterranean Sea. These patterns were investigated regarding known species-specific feeding preferences and environmental characteristics (i. e. mesoscale activity) of the survey zone. ABFT was by far the most abundant species during the surveys in terms of schools and individuals, followed by striped dolphins and fin whales. However, when accounted for availability bias, schools of dolphins and fin whales were of equal density. Direct interactions of the species appeared to be the exception, but results indicate that densities, presence and core sighting locations of striped dolphins and ABFT were correlated. Core sighting areas of these species were located close to an area of high mesoscale activity (oceanic fronts and eddies). Fin whales did not show such a correlation. The results further highlight the feasibility to coordinate research efforts to explore the behaviour and abundance of the investigated species, as demanded by the Marine Strategy Framework Directive (MSFD).

Understanding the ecological and anthropogenic drivers of population dynamics requires detailed studies on habitat selection and spatial distribution. Although small pelagic fish aggregate in large shoals and usually exhibit important spatial structure, their dynamics in time and space remain unpredictable and challenging. In the Gulf of Lions (north-western Mediterranean), sardine and anchovy biomasses have declined over the past 5 years causing an important fishery crisis while sprat abundance rose. Applying geostatistical tools on scientific acoustic surveys conducted in the Gulf of Lions, we investigated anchovy, sardine and sprat spatial distributions and structures over 10 years. Our results show that sardines and sprats were more coastal than anchovies. The spatial structure of the three species was fairly stable over time according to variogram outputs, while year-to-year variations in kriged maps highlighted substantial changes in their location. Support for the McCall's basin hypothesis (covariation of both population density and presence area with biomass) was found only in sprats, the most variable of the three species. An innovative method to investigate species collocation at different scales revealed that globally the three species strongly overlap. Although species often co-occurred in terms of presence/absence, their biomass density differed at local scale, suggesting potential interspecific avoidance or different sensitivity to local environmental characteristics. Persistent favourable areas were finally detected, but their environmental characteristics remain to be determined.

Determining patterns of change in species richness and the processes underlying the dynamics of biodiversity are of key interest within the field of ecology, but few studies have investigated the dynamics of vertebrate communities at a decadal temporal scale. Here, we report findings on the spatio-temporal variability in the richness and composition of fish communities along the Norwegian Skagerrak coast having been surveyed for more than half a century. Using statistical models incorporating non-detection and associated sampling variance, we estimate local species richness and changes in species composition allowing us to compute temporal variability in species richness. We tested whether temporal variation could be related to distance to the open sea and to local levels of pollution. Clear differences in mean species richness and temporal variability are observed between fjords that were and were not exposed to the effects of pollution. Altogether this indicates that the fjord is an appropriate scale for studying changes in coastal fish communities in space and time. The year-to-year rates of local extinction and turnover were found to be smaller than spatial differences in community composition. At the regional level, exposure to the open sea plays a homogenizing role, possibly due to coastal currents and advection.