26 results on '"Bamidele Soji Oderinde"'
Search Results
2. Leucocytes and Th-associated Cytokine Profile of HIV-Leishmaniasis Co-Infected Persons Attending Abuja Teaching Hospital, Nigeria
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Idris Nasir Abdullahi, Anthony Uchenna Emeribe, Hafeez Aderinsayo Adekola, Habiba Yahaya Muhammad, Abdurrahman El-fulaty Ahmad, Abubakar Umar Anka, Yusuf Mohammed, Shamsuddeen Haruna, Bamidele Soji Oderinde, Halima Ali Shuwa, and Adamu Babayo
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Medicine (General) ,R5-920 - Published
- 2020
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3. Association of Hemoglobin Electrophoretic Phenotype with Human Parvovirus B19 infection among Pregnant Women attending Abuja Tertiary Hospital, Nigeria
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Idris Nasir Abdullahi, Hafeez Aderinsayo Adekola, Anthony Uchenna Emeribe, Abdurrahman Elfulaty Ahmad, Thairu Yunusa, Maryam Muhammad Zakari, Nkechi Blessing Onukegbe, Sanusi Musa, Dele Ohinoyi Amadu, and Bamidele Soji Oderinde
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viremia ,anemia ,infectious disease transmission ,vertical ,Medicine - Abstract
Background and Objectives: Human parvovirus B19 (B19V) is a widespread virus with various manifestations depending on the immunologic and hematologic status of the host. Infection with the virus can cause a wide range of complications in fetus of infected pregnant women, especially those with hemoglobinopathies. This study aimed to determine association of hemoglobin electrophoretic patterns and risk of B19V infection in pregnant women. Methods: Blood samples were collected from 200 pregnant women attending University of Abuja Teaching Hospital, Abuja, Nigeria. The samples were screened for anti-B19V IgM and IgG. Hemoglobin patterns were determined using commercial enzyme-linked immunosorbent assay kits and Minicap Flex Piercing Electrophoresis system. Structured questionnaires were used to collate sociodemographic variables and associated risk factors of B19V. Results: Of 200 participants, 12 (6.0%) were positive for B19V IgM, 45 (22.5%) were positive for IgG and two (1.0%) were positive for both antibody, while 145 (72.5%) had no detectable B19V antibody. Twenty-six subjects (28.3%) with HbAA hemoglobin pattern had B19V IgG of whom, nine (12.5%) had HbAS and 11 (30.6%) had HbSS electrophoretic patterns. There was a significant association between prevalence of anti-B19V IgG and hemoglobin electrophoretic pattern of participants (P=0.037). However, no association was found between prevalence of B19V IgM and hemoglobin electrophoretic pattern, age and parity of pregnant women (P>0.05). Conclusion: Our findings revealed a high prevalence of B19V infection among pregnant women in the studied area. In addition, acute B19V seems to be associated with hemoglobin electrophoretic patterns of pregnant women. It is recommended to follow up newborns of anti-B19V IgM positive pregnant women.
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- 2020
4. Diagnostic performance of a colorimetric RT -LAMP for the identification of SARS-CoV-2: A multicenter prospective clinical evaluation in sub-Saharan Africa
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Marycelin Mandu Baba, Molalegne Bitew, Joseph Fokam, Eric Agola Lelo, Ahmed Ahidjo, Kominist Asmamaw, Grace Angong Beloumou, Wallace Dimbuson Bulimo, Emanuele Buratti, Collins Chenwi, Hailu Dadi, Pierlanfranco D'Agaro, Laura De Conti, Nadine Fainguem, Galadima Gadzama, Paolo Maiuri, Janet Majanja, Wadegu Meshack, Alexis Ndjolo, Celine Nkenfou, Bamidele Soji Oderinde, Silvanos Mukunzi Opanda, Ludovica Segat, Cristiana Stuani, Samwel L. Symekher, Desire Takou, Kassahun Tesfaye, Gianluca Triolo, Keyru Tuki, Serena Zacchigna, and Alessandro Marcello
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Medicine (General) ,R5-920 - Abstract
Background: Management and control of the COVID-19 pandemic caused by the severe acute respiratory syndrome coronavirus SARS-CoV-2 is critically dependent on quick and reliable identification of the virus in clinical specimens. Detection of viral RNA by a colorimetric reverse transcription loop-mediated isothermal amplification (RT-LAMP) is a simple, reliable and cost-effective assay, deployable in resource-limited settings (RLS). Our objective was to evaluate the intrinsic and extrinsic performances of RT-LAMP in RLS. Methods: This is a multicenter prospective observational study of diagnostic accuracy, conducted from October 2020 to February 2021 in four African Countries: Cameroon, Ethiopia, Kenya and Nigeria; and in Italy. We enroled 1657 individuals who were either COVID-19 suspect cases, or asymptomatic and presented for screening. RNA extracted from pharyngeal swabs was tested in parallel by a colorimetric RT-LAMP and by a standard real time polymerase chain reaction (RT-PCR). Findings: The sensitivity and specificity of index RT LAMP compared to standard RT-PCR on 1657 prospective specimens from infected individuals was determined. For a subset of 1292 specimens, which underwent exactly the same procedures in different countries, we obtained very high specificity (98%) and positive predictive value (PPV = 99%), while the sensitivity was 87%, with a negative predictive value NPV = 70%, Stratification of RT-PCR data showed superior sensitivity achieved with an RT-PCR cycle threshold (Ct) below 35 (97%), which decreased to 60% above 35. Interpretation: In this field trial, RT-LAMP appears to be a reliable assay, comparable to RT-PCR, particularly with medium-high viral loads (Ct
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- 2021
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5. Prevalence of non-polio enteroviruses infections among children in Northern Nigeria
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Peter Elisha Ghamba, David Bukbuk, Bamidele Soji Oderinde, Marycelin Baba, Anthony Uchenna Emeribe, and Idris Nasir Abdullahi
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Non-Polio Enteroviruses, Cell culture, Feco-oral transmission, Nigeria ,Microbiology ,QR1-502 - Abstract
Background: Human non-polio enteroviruses (NPEVs) have been associated with certain life-threatening disorders in children. However, there is paucity of NPEV infection data in most developing countries. This study determined the 3-year prevalence of non-polio enteroviruses (NPEVs) among children in some Northern States of Nigeria. Materials and Methods: Duplicate stool samples were collected from 27778 children ≤15 years. These samples were processed and analyzed for characteristic NPEVs cytopathic effects (CPE) on L20B and RD cell lines. Tests were considered positive if the duplicate samples produced distinct CPE on both cell lines. Results: Of the 27778 samples processed, 3991 (14.4%) NPEVs were isolated. Participants of the male gender (14.5%) within the age range of 0-5 years (14.7%) from Yobe state (15.3%) whose samples were received in the month of June (22.2%) and in the year 2015 (18.8%) had the highest prevalence of NPEVs. June had significant risk factors of NPEVs (p˂0.001, OR=1.95 [95%CI: 1.60-2.34]). However, there was no significant association between age, sex and location of sample collection with the prevalence of NPEV (p˃0.05) Conclusions: This study revealed a relatively high prevalence of NPEVs among the study population. This calls for the need for government implementation of consistently improved water, food and environmental hygiene.
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- 2020
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6. Leucocytes and Th-associated cytokine profile of HIV-leishmaniasis coinfected patients attending the Abuja Teaching Hospital, Nigeria
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Idris Nasir Abdullahi, Anthony Uchenna Emeribe, Hafeez Aderinsayo Adekola, Habiba Yahaya Muhammad, Abdurrahman El-fulaty Ahmad, Abubakar Umar Anka, Shamsuddeen Haruna, Bamidele Soji Oderinde, Yusuf Mohammed, Halima Ali Shuwa, and Adamu Babayo
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Cellular Immunity ,Cytokines ,Leishmaniasis ,Pro-inflammation ,HIV co-infection ,Medicine - Abstract
Introduction. T-helper cells (Th)-1& -2 cytokines homeostasis control orpredict clinical outcome of infected persons, especially those with HIV /AIDS. This case-control study evaluated the leucocytes differentials, TNF-alpha, interleukin (IL)-2 and -10 levels among HIV infected persons with serological evidence of leishmaniasis attending University of Abuja Teaching Hospital, Nigeria. Material and Methods. Blood samples from 28 HIV infected persons who had Leishmania donovani rK39 and IgG positive (group 1), 30 age- & -sex matched HIV infected persons without Leishmania antibodies (group 2) and 30 apparently healthy persons without HIV and Leishmania antibodies (group 3). Full blood counts, TNF alpha, IL-2 and -10 levels were analyzed using automated hematology analyzer and ELISA, respectively. Structured questionnaires were used to collate biodata and clinical presentations of participants. Results. Ten (35.7%) participants in group 1 were on ART, 15 (50%) in group 2 were on ART, while group 3 were ART naïve. There were significantly higher values in basophil (4.4 ± 2.5%) and eosinophil counts (12.9 ± 3.8%) in HIV/leishmania coinfected persons (p ˂ 0.005). However, other white cells subpopulation was significantly lower in HIV/leishmania co-infected participants (p ˂ 0.05). There was significantly reduced CD4+ T cell counts ([119 ± 26 versus 348 ± 63 versus 605 ± 116 cells/mm3]), TNF-alpha ([36.82 ± 8.21 versus 64.67 ± 12.54 versus 254.98 ± 65.59 pg/mL]) and IL-2 levels ([142.14 ± 20.91 versus 507.6 ± 84.42 versus 486.62 ± 167.87 pg/mL]) among HIV/Leishmania co-infected participants compared to group 2 and group 3 participants, respectively. However, higher IL-10 level (80.35 ± 14.57 pg/mL) was found in HIV/Leishmania co-infected participants as opposed to the HIV mono-infected (62.2 ± 10.43 pg/mL) and apparently healthy persons (23.97 ± 4.88 pg/mL) (p ˂ 0.001). Conclusion. Eosinophil, basophil counts and serum IL-10 level were high in HIV/Leishmania coinfected persons, demonstrating parasite-induced hypersensitivity and immunosuppression.
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- 2020
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7. Prevalence and antimicrobial susceptibility pattern of uropathogenic organisms among diabetic patients attending State Specialist Hospital, Maiduguri Nigeria
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Wathanafa Madu, Musa Joseph Bamaiyi, Monilade Tawa Akinola, Muhammed Talle, Hamidu M. Ibrahim, Idris Nasir Abdullahi, Muhammad Mustapha, Marycelin Mandu Baba, and Bamidele Soji Oderinde
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Antimicrobial Susceptibility ,Uropathogenic Organisms ,Diabetic Patients - Abstract
Urinary tract infection (UTI) is the colonization of the urinary tract by pathogenic microorganisms. There is paucity of data on the development of multidrug resistant uropathogenic strains associated with Diabetes Mellitus (DM). In this cross-sectional study we investigated a total of three hundred and thirty (330) known diabetes mellitus (DM) patients, comprising of 06 (1.8%) Type I DM, 296 (89.7%) Type II DM and 28 (8.5%) Gestational Diabetes patients aged 21 to 80 years. The subjects consisted of 150 males (45.5%) and 180 (54.5%) females. Urine culture was carried out on CLED, MacConkey and blood agar and Kirby Bauer disc diffusion for antimicrobial susceptibility testing was carried out to determine the susceptibility of the isolated organisms to commonly used antimicrobials in the study area. The study revealed that one hundred and twenty-two (37%) yielded significant bacterial growth. The percentage distribution of the organisms isolated are as follows; Staphylococci (10.6%), Klebsiella spp. (13.2%), Coliforms spp. (13.9%), Staphylococcus aureus (24.6%) and Escherichia coli has the highest occurrence of (37.7%). Gram negative bacteria isolated were highly susceptible to Ciprofloxacin (10 μg), tarivid (10 μg) and streptomycin (30 μg); and moderately- to poorly sensitive to the other antibiotics used in the study. In conclusion female diabetics were at a higher risk for UTIs that than males (p=0.000) and low educational level/social class was also a risk factor (p=0.04) when compared to subjects of higher educational level/ social class.
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- 2022
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8. Serological detection of hepatitis B and D virus co-infection among patients attending a tertiary health facility at Maiduguri, Nigeria
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Iman U. Igwegbe, Bamidele Soji Oderinde, Joshua Dawurung, Oyebode O. Samuel, Semsari Latbone, Hamidu M. Ibrahim, Ballah Akawu Danue, Babagana W. Goni, Babajide Ajayi, Ibrahim Musa Kida, and Idris Nasir Abdullahi
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HBsAg ,medicine.medical_specialty ,lcsh:Internal medicine ,Cirrhosis ,HDV-HBV co-infection ,viruses ,Seroprevalence ,Nigeria ,medicine.disease_cause ,Hepatitis D virus ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,030212 general & internal medicine ,lcsh:RC31-1245 ,Hepatitis B virus ,business.industry ,virus diseases ,Hepatitis B ,biochemical phenomena, metabolism, and nutrition ,medicine.disease ,digestive system diseases ,HBeAg ,030211 gastroenterology & hepatology ,Liver function ,business - Abstract
Background Hepatitis D virus (HDV) is highly pathogenic, and clinical studies revealed that HDV infection aggravates the natural history of the underlying hepatitis B virus (HBV) infection by progression to cirrhosis that leads to early decompensation of liver function compared with HBV mono-infection. To determine the seroprevalence of HDV among HBsAg-seropositive patients and associated biochemical profiles at Maiduguri, Nigeria, a hospital-based cross-sectional study on 180 sera of patients positive for HBsAg by ELISA were evaluated for anti-HDV, hepatitis B envelop antigen, anti-HBs antibodies and liver enzyme profiles. Results HDV seroprevalence of 3.3% among 180 HBsAg-positive patients. Relatively higher seroprevalence of HDV was observed in males (4.3%) than in females (2.3%). The highest infection rate (20%) was obtained in patients ≥ 56 years. However, no significant association between positive anti-HDV seroprevalence and gender (p > 0.05). Of the 6 (3.3%) anti-HDV-positive patients, only 1 (16.7%) was positive for HBeAg while all were negative for anti-HBs antibodies. The mean level of liver enzyme level of AST and ALT of the anti-HDV-positive patients significantly differ from that of HBsAg mono-infected patients (p ˂ 0.05). However, no significant difference (p p ˃ 0.05) was found. Conclusion This study revealed a relatively low presence of HDV in HBsAg-positive patients. Furthermore, HDV-HBV co-infected patients had somewhat worse liver enzyme upregulation. This underscores the need for rapid HDV testing and treatment in HBV-infected patients.
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- 2021
9. Leucocytes and Th-associated Cytokine Profile of HIV-Leishmaniasis Co-Infected Persons Attending Abuja Teaching Hospital, Nigeria
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Abubakar Umar Anka, Anthony Uchenna Emeribe, Habiba Yahaya Muhammad, Yusuf Mohammed, Adamu Babayo, Bamidele Soji Oderinde, Shamsuddeen Haruna, Halima Ali Shuwa, Abdurrahman Elfulaty Ahmad, Idris Nasir Abdullahi, and Hafeez Aderinsayo Adekola
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Cellular immunity ,lcsh:R5-920 ,biology ,business.industry ,medicine.medical_treatment ,Leishmania donovani ,Immunosuppression ,Leishmaniasis ,General Medicine ,Eosinophil ,biology.organism_classification ,medicine.disease ,Leishmania ,medicine.anatomical_structure ,Acquired immunodeficiency syndrome (AIDS) ,Immunology ,medicine ,biology.protein ,Original Article ,Antibody ,business ,lcsh:Medicine (General) - Abstract
OBJECTIVE: T-helper cells (Th)-1& -2 cytokines homeostasis control or predict clinical outcome of infected persons, especially those with HIV /AIDS. This case-control study evaluated the leucocytes differentials, TNF-alpha, interleukin (IL)-2 and -10 levels among HIV infected persons with serological evidence of leishmaniasis attending University of Abuja Teaching Hospital, Nigeria MATERIALS AND METHODS: Blood samples from 28 HIV infected persons who had Leishmania donovani rK39 and Immunoglobulin-G (IgG) positive (group 1), 30 age- & -sex matched HIV infected persons without Leishmania antibodies (group 2) and 30 apparently healthy persons without HIV and Leishmania antibodies (group 3). Full blood counts, TNF alpha, IL-2 and -10 levels were analyzed using automated hematology analyzer and ELISA, respectively. Structured questionnaires were used to collate biodata and clinical presentations of participants. RESULTS: Ten (35.7%) participants in group 1 were on ART, 15 (50%) in group 2 were on ART, while group 3 were ART naïve. There were significantly higher values in basophil (4.4±2.5%) and eosinophil counts (12.9±3.8%) in HIV/leishmania coinfected persons (p
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- 2020
10. Association of Hemoglobin Electrophoretic Phenotype with Human Parvovirus B19 infection among Pregnant Women attending Abuja Tertiary Hospital, Nigeria
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Anthony Uchenna Emeribe, Thairu Yunusa, Hafeez Aderinsayo Adekola, Nkechi Blessing Onukegbe, Sanusi Musa, Abdurrahman Elfulaty Ahmad, Maryam Muhammad Zakari, Dele Ohinoyi Amadu, Idris Nasir Abdullahi, and Bamidele Soji Oderinde
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viremia ,vertical ,business.industry ,Immunology ,Medicine ,infectious disease transmission ,Human parvovirus ,Hemoglobin ,business ,anemia ,Phenotype - Abstract
Background and Objectives: Human parvovirus B19 (B19V) is a widespread virus with various manifestations depending on the immunologic and hematologic status of the host. Infection with the virus can cause a wide range of complications in fetus of infected pregnant women, especially those with hemoglobinopathies. This study aimed to determine association of hemoglobin electrophoretic patterns and risk of B19V infection in pregnant women. Methods: Blood samples were collected from 200 pregnant women attending University of Abuja Teaching Hospital, Abuja, Nigeria. The samples were screened for anti-B19V IgM and IgG. Hemoglobin patterns were determined using commercial enzyme-linked immunosorbent assay kits and Minicap Flex Piercing Electrophoresis system. Structured questionnaires were used to collate sociodemographic variables and associated risk factors of B19V. Results: Of 200 participants, 12 (6.0%) were positive for B19V IgM, 45 (22.5%) were positive for IgG and two (1.0%) were positive for both antibody, while 145 (72.5%) had no detectable B19V antibody. Twenty-six subjects (28.3%) with HbAA hemoglobin pattern had B19V IgG of whom, nine (12.5%) had HbAS and 11 (30.6%) had HbSS electrophoretic patterns. There was a significant association between prevalence of anti-B19V IgG and hemoglobin electrophoretic pattern of participants (P=0.037). However, no association was found between prevalence of B19V IgM and hemoglobin electrophoretic pattern, age and parity of pregnant women (P>0.05). Conclusion: Our findings revealed a high prevalence of B19V infection among pregnant women in the studied area. In addition, acute B19V seems to be associated with hemoglobin electrophoretic patterns of pregnant women. It is recommended to follow up newborns of anti-B19V IgM positive pregnant women.
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- 2020
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11. A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa
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Aida Elargoubi, John M. Morobe, Jiro Yasuda, Madisa Mine, Faustinos T. Takawira, Jean-Jacques Muyembe Tamfum, Amal Souissi, Hela Karray, Dominique Goedhals, Michael Owusu, Mitoha O. Ayekaba, Pascale Ondoa, Bryan Fulbert Nkengfack Tegomoh, Daniel G. Amoako, Mathabo Mareka, Sameh Trabelsi, Dorcas Maruapula, Magalutcheemee Ramuth, Danny S. Park, Bamidele Soji Oderinde, Maitshwarelo I. Matsheka, Robert A. Kingsley, Philippe Dussart, Matthew Cotten, Hesham A. Elgahzaly, Oyewale Tomori, Arash Iranzadeh, Nicksy Gumede, Marta Giovanetti, Folarin Onikepe, Omoruyi E. Chukwuma, Nnaemeka Ndodo, Mba Nwando, Oladiji Femi, Sylvie L. Budiaki, Gemma L. Kay, Johnson C. Okolie, Saber Masmoudi, Okokhere Peter, Hlanai Gumbo, Sara H.A. Agwa, Mooko Sekhele, Imed Gaaloul, Sheila M. Mandanda, Enatha Mukantwari, Ngonda Saasa, Sanaâ Lemriss, Hellen Nansumba, Akano Kazeem, Upasana Ramphal, Carolyn Williamson, Belinda Louise Herring, Vagner Fonseca, Edidah M. Ong'era, Joana Q. Mends, Ahmed E Ogwell Ouma, Anika Vinze, Ahmad Sayed, Richard Phillips, Adewunmi M. Olubusuyi, Bourema Kouriba, Vivianne Gorova, John O. Gyapong, Tulio de Oliveira, Arnold W. Lambisia, Najla Kharrat, Wolfgang Preiser, Ojide Chiedozie Kingsley, Yenew K. Tebeje, Sherihane Aryeetey, Yaw Bediako, David A. Rasmussen, Wael H. Roshdy, Norosoa Harline Razanajatovo, Siham Elhamoumi, Sylvie van der Werf, Moussa Moïse Diagne, Claudia Daubenberger, Oshomah Cyril, Andrew J. Page, Uwanibe Jessica, Matoke-Muhia Damaris, Daniel J. Bridges, Sumir Panji, Mahjoub Aouni, Adnene Hammami, Simani Gaseitsiwe, Daniel Lule Bugembe, Gugu Maphalala, Kim Hae-Young, Mohamed K. Khalifa, Safietou Sankhe, Fabian H. Leendertz, Richard Njouom, Ousmane Faye, Kwabena O. Duedu, Jeffrey G. Shaffer, Tobias Schindler, Bankole Bolajoko, Cathrine Scheepers, Francisca M. Muyembe, Ajogbasile F. Victoria, Mirabeau T. Youtchou, Ayoade Femi, Amel Chtourou, Kefentse A. Tumedi, Adrienne A. Amuri, Joyce M. Ngoi, Etile Anoh, Richmond Gorman, Mohamed Abouelhoda, Ali Ahmed Yahaya, Paulo Arnaldo, Alexander J. Trotter, Lahcen Belyamani, Isaac Ssewanyana, Susan Nabadda, Arshad Ismail, Julia C. Andeko, James Emmanuel San, Susan Engelbrecht, Sikhulile Moyo, Jinal N. Bhiman, Jean-Michel Heraud, Julius J. Lutwama, Samar Metha, Amadou Diallo, Soa-Fy Andriamandimby, Rosina A. A. Carr, Edgar Simulundu, Steve A. Mundeke, Nelson B. Silochi, Shymaa S. Ahmed, Nadia Touil, Ihekweazu Chikwe, Deogratius Ssemwanga, Ilhem Boutiba-Ben Boubaker, Houriiyah Tegally, Okogbenin Sylvanus, Abdoul K. Sangare, Mulenga Mwenda, Fausta Shakiwa Mosha, Amadou A. Sall, Derek Tshiabuila, D. James Nokes, Yvan Butera, Maximillian Mpina, Adedotun-Sulaiman Kemi, Onwe E. Ogah, Jean B. Lekana-Douk, Stephen F. Schaffner, Vincent Enouf, Chantal Akoua-Koffi, Diarra Bassirou, Edwin Shumba, Deelan Doolabh, Saba Gargouri, Kayode T. Adeyemi, Wonderful T. Choga, Nicola Mulder, Inbal Gazy, Mushal Allam, Saâd El Kabbaj, Christian T. Happi, Frank Tanser, Sobajo Tope, Michael R. Wiley, Katherine J. Siddle, Charles N. Agoti, John Kayiwa, George Githinji, Diego F. Cuadros, Abdoul-Salam Ouédraogo, Fowotade Adeola, Sonia Lekana-Douki, Edith N. Ngabana, William Ampofo, U George, Elmostafa El Fahime, Jean-Claude C Makangara, Nalia Ismael, Ebenezer Foster-Nyarko, Samar K. Kassim, Nedio Mabunda, Hafaliana Christian Ranaivoson, Tapfumanei Mashe, Sylvie Behillil, Etienne Simon-Loriere, Donwilliams O. Omuoyo, Darren P. Martin, Azeddine Ibrahimi, Paul E. Oluniyi, Richard J Lessells, My V. T. Phan, Feriel Bouzid, Salako B. Lawal, Gert U. van Zyl, Fares Wasfi, Christophe Peyrefitte, Joyce Namulondo, Ugochukwu J. Anyaneji, Mariétou Faye Paye, Augustina Sylverken, Sébastien Calvignac-Spencer, Malebogo Kebabonye, Sophie J Prosolek, Mahmoud el Hefnawi, Adeyemi O. O. Oluwapelumi, Fakayode O. Enoch, Eddy Kinganda Lusamaki, Gaetan Thilliez, Beatrice Dhaala, Gabriel K. Mbunsu, Lavanya Singh, Nnennaya A. Ajayi, Justin O'Grady, Olawoye Idowu, Ngoy Nsenga, Baba Marycelin, Ndongo Dia, Abdul Karim Sesay, Ikponmwosa Odia, Chika K. Onwuamah, Pardis C. Sabeti, Collins M. Morang’a, Hajar Lemriss, Dominic S. Y. Amuzu, Jones Gyamfi, Sofonias K. Tessema, Iyaloo Konstantinus, Pontiano Kaleebu, Patrick Semanda, Fawzi Derrar, Alpha Kabinet Keita, Joweria Nakaseegu, Ibtihel Smeti, Jocelyn Kiconco, Audu Rosemary, K Said, Bronwyn Kleinhans, Fatma Abdelmoula, Sureshnee Pillay, Abechi Priscilla, Manel Turki, Fred A. Dratibi, Berthe-Marie Njanpop-Lafourcade, Zaydah R. de Laurent, David Baker, Nadine Rujeni, Oguzie Judith, Peter K. Quashie, Phillip Armand Bester, Emmanuel Lokilo, Catherine Pratt, Nabil Abid, Mamadou Diop, Placide Mbala, Eduan Wilkinson, Johnathan A. Edwards, Ahmed Rebai, Haruka Abe, Ana Victoria Gutierrez, Thanh Le-Viet, Essia Belarbi, Steven Rudder, Jouali Farah, Maha Mastouri, Nei-yuan Hsiao, Happi Anise, Cara E. Brook, Lamia Fki-Berrajah, Gordon A. Awandare, Ugwu Chinedu, Abdel-Rahman N. Zekri, Sami Kammoun, Leonardo de Oliveira Martins, Martin M. Nyaga, Lynn Tyers, Jingjing Li, Ikhlas Ben Ayed, Mouna Ouadghiri, Amadou Koné, Reuben Ayivor-Djanie, Innocent Mudau, Thabo Mohale, Olumade Testimony, Eromon Philomena, Yeshnee Naidoo, Patrice Combe, Seydou Doumbia, Anne von Gottberg, Akpede George, Nosamiefan Iguosadolo, Mohamed G. Seadawy, Bronwyn McInnis, Faida Ajili, Grit Schubert, Tarik Aanniz, Maureen W. Mburu, Soumeya Ouangraoua, John N. Nkengasong, Jennifer Giandhari, University of KwaZulu-Natal [Durban, Afrique du Sud] (UKZN), Stellenbosch University, Laboratório de Biologia Molecular de Flavivírus [Rio de Janeiro], Instituto Oswaldo Cruz / Oswaldo Cruz Institute [Rio de Janeiro] (IOC), Fundação Oswaldo Cruz / Oswaldo Cruz Foundation (FIOCRUZ), Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)-Fundação Oswaldo Cruz / Oswaldo Cruz Foundation (FIOCRUZ), Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP), Universidade Federal de Minas Gerais = Federal University of Minas Gerais [Belo Horizonte, Brazil] (UFMG), University of Cincinnati (UC), University of Cape Town, North Carolina State University [Raleigh] (NC State), University of North Carolina System (UNC), Recherches Translationnelles sur le VIH et les maladies infectieuses endémiques et émergentes (TransVIHMI), Institut de Recherche pour le Développement (IRD)-Université de Yaoundé I-Université Cheikh Anta Diop [Dakar, Sénégal] (UCAD)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Montpellier (UM), Institut Pasteur de Dakar, Réseau International des Instituts Pasteur (RIIP), University of Chicago, Institut Pasteur de Madagascar, Génomique évolutive des virus à ARN - Evolutionary genomics of RNA viruses, Institut Pasteur [Paris] (IP), Centre Hospitalier de Mayotte, Centre Pasteur du Cameroun, Génétique Moléculaire des Virus à ARN - Molecular Genetics of RNA Viruses (GMV-ARN (UMR_3569 / U-Pasteur_2)), Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), Centre National de Référence des virus des infections respiratoires (dont la grippe) - National Reference Center Virus Influenzae [Paris] (CNR - laboratoire coordonnateur), Institut Pasteur [Paris] (IP)-Université Paris Cité (UPCité), Université de Sfax - University of Sfax, National Institute for Communicable Diseases [Johannesburg] (NICD), University of the Witwatersrand [Johannesburg] (WITS), Centre Hospitalier Universitaire Souro Sanou [Bobo-Dioulasso] (CHUSS), Centre for the AIDS Programme of Research [Durban, South Africa] (CAPRISA), University of Washington [Seattle], The University of Ghana (WACCBIP) team was funded by a Wellcome/African Academy of Sciences Developing Excellence in Leadership Training and Science (DELTAS) grant (DEL-15-007 and 107755/Z/15/Z: Awandare), National Institute of Health Research (NIHR) (17.63.91) grants using UK aid from the UK government for a global health research group for genomic surveillance of malaria in West Africa (Wellcome Sanger Institute, UK) and the global research unit for Tackling Infections to Benefit Africa (TIBA partnership, University of Edinburgh), and a World Bank African Centres of Excellent grant (WACCBIP-NCDs: Awandare). Project ADAGE PRFCOV19-GP2 (2020-2022) includes 40 researchers from the Center of Biotechnology of Sfax, the University of Sfax, the University of Monastir, the University Hospital Hédi Chaker of Sfax, the Military Hospital of Tunis, and Dacima Consulting. Ministry of Higher Education and Scientific Research and Ministry of Health of the Republic of Tunisia. The Uganda contributions were funded by the UK Medical Research Council (MRC/UKRI) and the UK Department for International Development (DFID) under the MRC/DFID concordat agreement (grant agreement number NC_PC_19060) and by the Wellcome, DFID–Wellcome Epidemic Preparedness–Coronavirus (grant agreement number 220977/Z/20/Z) awarded to M.C. Work from Quadram Institute Bioscience was funded by The Biotechnology and Biological Sciences Research Council Institute Strategic Programme Microbes in the Food Chain BB/R012504/1 and its constituent projects BBS/E/F/000PR10348, BBS/E/F/000PR10349, BBS/E/F/000PR10351, and BBS/E/F/000PR10352 and by the Quadram Institute Bioscience BBSRC–funded Core Capability Grant (project number BB/CCG1860/1). The Africa Pathogen Genomics Initiative (Africa PGI) at the Africa CDC is supported by the Bill & Melinda Gates Foundation (INV018978 and INV018278), Illumina Inc, the US Centers for Disease Control and Prevention (CDC), and Oxford Nanopore Technologies. Sequences generated in Zambia through PATH were funded by the Bill & Melinda Gates Foundation. The findings and conclusions contained within are those of the authors and do not necessarily reflect positions or policies of the Bill & Melinda Gates Foundation. Funding for sequencing in Côte d’Ivoire, Burkina Faso, and part of the sequencing in the DRC was granted by the German Federal Ministry of Education and Research (BMBF). Sequencing efforts from Morocco have been supported by Academie Hassan II of Science and Technology, Morocco. Funding for surveillance, sampling, and testing in Madagasar was provided by the WHO, the CDC (grant U5/IP000812-05), the US Agency for International Development (USAID, cooperation agreement 72068719CA00001), and the Office of the Assistant Secretary for Preparedness and Response in the US Department of Health and Human Services (DHHS, grant number IDSEP190051-01-0200). Funding for sequencing was provided by the Bill & Melinda Gates Foundation (GCE/ID OPP1211841), Chan Zuckerberg Biohub, and the Innovative Genomics Institute at UC Berkeley. The Botswana Harvard AIDS Institute was supported by the following funding: H3ABioNet through funding from the National Institutes of Health Common Fund (U41HG006941)—H3ABioNet is an initiative of the Human Health and Heredity in Africa Consortium (H3Africa) program of the African Academy of Science (AAS), DHHS–NIH–National Institute of Allergy and Infectious Diseases (NIAID) (5K24AI131928-04 and 5K24AI131924-04), Sub-Saharan African Network for TB/HIV Research Excellence (SANTHE), a DELTAS Africa Initiative (grant DEL-15-0060—the DELTAS Africa Initiative is an independent funding scheme of the AAS’s Alliance for Accelerating Excellence in Science in Africa (AESA) and supported by the New Partnership for Africa’s Development Planning and Coordinating Agency (NEPAD Agency) with funding from the Wellcome Trust [grant 107752/Z/15/Z] and the UK government, and the South African Medical Research Council (SAMRC) and the Department of Technology and Innovation as part of the Network for Genomic Surveillance in South Africa (NGS-SA) and the Stellenbosch University Faculty of Medicine & Health Sciences, Strategic Equipment Fund. D.P.M. is funded by the Wellcome Trust (Wellcome Trust grant 222574/Z/21/Z). Sequencing activities at the NICD were supported by a conditional grant from the South African National Department of Health as part of the emergency COVID-19 response, a cooperative agreement between the National Institute for Communicable Diseases of the National Health Laboratory Service and the U.S. Centers for Disease Control and Prevention (grant number 5 U01IP001048-05-00), the African Society of Laboratory Medicine (ASLM) and Africa Centers for Disease Control and Prevention through a sub-award from the Bill and Melinda Gates Foundation grant number INV-018978, the UK Foreign, Commonwealth and Development Office and Wellcome (Grant no 221003/Z/20/Z), the South African Medical Research Council (Reference number SHIPNCD 76756), the UK Department of Health and Social Care, managed by the Fleming Fund and performed under the auspices of the SEQAFRICA project. Furthermore, pandemic surveillance in South Africa and Senegal was supported in part through NIH grant U01 AI151698 for the United World Antiviral Research Network (UWARN). Support for pandemic surveillance from the Tulio de Oliveira group to other African countries is funded by the Rockefeller Foundation. Sequencing efforts in the DRC were funded by the Bill & Melinda Gates Foundation under grant INV-018030 awarded to C.B.P. and further supported by funding from the Africa CDC through the ASLM (African Society of Laboratory Medicine) for Accelerating SARS-CoV-2 Genomic Surveillance in Africa. Sequencing efforts in Rwanda were commissioned by the NIHR Global Health Research program (16/136/33) using UK aid from the UK government (funding to E.M. and N.R. through TIBA partnership) and additional funds from the government of Rwanda through RBC/National Reference Laboratory in collaboration with the Belgian Development Agency (ENABEL) for additional genomic sequencing at GIGA Research Institute–Liege/Belgium. The sequencing effort in Equatorial Guinea was supported by a public-private partnership, the Bioko Island Malaria Elimination Project, composed of the government of Equatorial Guinea Ministries of Mines and Hydrocarbons, and Health and Social Welfare, Marathon EG Production Limited, Noble Energy, Atlantic Methanol Production Company, and EG LNG. Sample collection and typing in Mali were supported by Fondation Merieux–France, and sequence efforts have been supported by the Enable and Enhance Initiative of the German Federal Government’s Security Cooperation against Biological Threats in the G5 Sahel Region. The Nigeria work was made possible by support from Flu Lab and a cohort of generous donors through TED’s Audacious Project, including the ELMA Foundation, MacKenzie Scott, the Skoll Foundation, and Open Philanthropy. Further Nigeria funding came from grants from the NIAID (www.niaid.nih.gov), NIH-H3Africa (https://h3africa.org) (U01HG007480 and U54HG007480), and the World Bank grant (worldbank.org) (ACE IMPACT project) to C.H. Analysis for the Gabon strains was supported by the Science and Technology Research Partnership for Sustainable Development (SATREPS), Japan International Cooperation Agency (JICA), and Japan Agency for Medical Research and Development (AMED) (grant number JP20jm0110013) and a grant from AMED (grant number JP20wm0225003). Sequencing at KEMRI-Wellcome Trust Research Programme site in Kenya was supported by the National Institute for Health Research (NIHR) (project references 17/63/82 and 16/136/33), using UK aid from the UK Government to support global health research, and the UK Foreign, Commonwealth and Development Office and Wellcome Trust (grant# 102975, 220985)., and We acknowledge the authors from the originating laboratories and the submitting laboratories, who generated and shared, via GISAID, the genetic sequence data on which this research is based (table S4). We also acknowledge the contribution of K. Maria from the NGS-SA platform for their contribution toward the sequencing effort in Cape Town, South Africa. Similarly, we thank A. M. Elsaame, S. M. Elsayed, and R. M. Darwish from the Faculty of Medicine Ain Shams Research Institute (MASRI) for their efforts toward sequencing in Egypt. We thank S. Bane, M. Sanogo, D. Diallo, A. Combo Georges Togo, and A. Coulibaly from the University Clinical Research Centre (UCRC) at the University of Sciences, Techniques, and Technologies of Bamako for the contribution they have made toward sequencing efforts in Mali. We acknowledge the contribution of M. Moeti and A. Salam Gueye from the WHO for their contribution toward combating SARS-CoV-2 on the African continent. We further wish to extend acknowledgment to S. Lutucuta and J. Morais from the Angolan Ministry of Health for their continued hard work with regards to SARS-CoV-2 sampling, sequencing, and pandemic response in Angola. From Malawi we wish to acknowledge the work of B. Chilima, B. Mvula, and M. Chitenje from the Malawian Ministry of Health for their work on the COVID-19 response within the country.
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2019-20 coronavirus outbreak ,[SDV.MHEP.ME]Life Sciences [q-bio]/Human health and pathology/Emerging diseases ,Multidisciplinary ,Early introduction ,Coronavirus disease 2019 (COVID-19) ,Transmission (medicine) ,SARS-CoV-2 ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,COVID-19 ,Genetic Variation ,[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,Genomics ,Left behind ,Geography ,[SDV.MHEP.MI]Life Sciences [q-bio]/Human health and pathology/Infectious diseases ,Development economics ,Pandemic ,Africa ,Epidemiological Monitoring ,[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,Humans ,[SDV.SPEE]Life Sciences [q-bio]/Santé publique et épidémiologie ,QH426 ,RA ,Pandemics - Abstract
The progression of the SARS-CoV-2 pandemic in Africa has so far been heterogeneous and the full impact is not yet well understood. Here, we describe the genomic epidemiology using a dataset of 8746 genomes from 33 African countries and two overseas territories. We show that the epidemics in most countries were initiated by importations, predominantly from Europe, which diminished following the early introduction of international travel restrictions. As the pandemic progressed, ongoing transmission in many countries and increasing mobility led to the emergence and spread within the continent of many variants of concern and interest, such as B.1.351, B.1.525, A.23.1 and C.1.1. Although distorted by low sampling numbers and blind-spots, the findings highlight that Africa must not be left behind in the global pandemic response, otherwise it could become a breeding ground for new variants.
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- 2021
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12. Diagnostic performance of a colorimetric RT -LAMP for the identification of SARS-CoV-2: A multicenter prospective clinical evaluation in sub-Saharan Africa
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Grace Angong Beloumou, Kassahun Tesfaye, Janet Majanja, Wallace D. Bulimo, Bamidele Soji Oderinde, Paolo Maiuri, Kominist Asmamaw, Pierlanfranco D'Agaro, Alessandro Marcello, Serena Zacchigna, Wadegu Meshack, Eric A. Lelo, Marycelin Baba, Cristiana Stuani, Galadima Gadzama, Nadine Fainguem, Silvanos Opanda, Céline Nguefeu Nkenfou, Ahmed Ahidjo, Molalegne Bitew, Collins Chenwi, Samwel Symekher, Ludovica Segat, Joseph Fokam, Keyru Tuki, Desire Takou, Hailu Dadi, Gianluca Triolo, Alexis Ndjolo, Laura De Conti, Emanuele Buratti, Baba, Marycelin Mandu, Bitew, Molalegne, Fokam, Joseph, Lelo, Eric Agola, Ahidjo, Ahmed, Asmamaw, Kominist, Beloumou, Grace Angong, Bulimo, Wallace Dimbuson, Buratti, Emanuele, Chenwi, Collin, Dadi, Hailu, D'Agaro, Pierlanfranco, De Conti, Laura, Fainguem, Nadine, Gadzama, Galadima, Maiuri, Paolo, Majanja, Janet, Meshack, Wadegu, Ndjolo, Alexi, Nkenfou, Celine, Oderinde, Bamidele Soji, Opanda, Silvanos Mukunzi, Segat, Ludovica, Stuani, Cristiana, Symekher, Samwel L, Takou, Desire, Tesfaye, Kassahun, Triolo, Gianluca, Tuki, Keyru, Zacchigna, Serena, and Marcello, Alessandro
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medicine.medical_specialty ,Medicine (General) ,business.industry ,SARS-CoV-2 ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Loop-mediated isothermal amplification ,General Medicine ,medicine.disease_cause ,Asymptomatic ,Reverse transcriptase ,LAMP ,Real-time polymerase chain reaction ,R5-920 ,Internal medicine ,medicine ,medicine.symptom ,business ,Reverse Transcription Loop-mediated Isothermal Amplification ,Viral load ,Coronavirus ,Research Paper - Abstract
Background: Management and control of the COVID-19 pandemic caused by the severe acute respiratory syndrome coronavirus SARS-CoV-2 is critically dependent on quick and reliable identification of the virus in clinical specimens. Detection of viral RNA by a colorimetric reverse transcription loop-mediated isothermal amplification (RT-LAMP) is a simple, reliable and cost-effective assay, deployable in resource-limited settings (RLS). Our objective was to evaluate the intrinsic and extrinsic performances of RT-LAMP in RLS. Methods: This is a multicenter prospective observational study of diagnostic accuracy, conducted from October 2020 to February 2021 in four African Countries: Cameroon, Ethiopia, Kenya and Nigeria; and in Italy. We enroled 1657 individuals who were either COVID-19 suspect cases, or asymptomatic and presented for screening. RNA extracted from pharyngeal swabs was tested in parallel by a colorimetric RT-LAMP and by a standard real time polymerase chain reaction (RT-PCR). Findings: The sensitivity and specificity of index RT LAMP compared to standard RT-PCR on 1657 prospective specimens from infected individuals was determined. For a subset of 1292 specimens, which underwent exactly the same procedures in different countries, we obtained very high specificity (98%) and positive predictive value (PPV = 99%), while the sensitivity was 87%, with a negative predictive value NPV = 70%, Stratification of RT-PCR data showed superior sensitivity achieved with an RT-PCR cycle threshold (Ct) below 35 (97%), which decreased to 60% above 35. Interpretation: In this field trial, RT-LAMP appears to be a reliable assay, comparable to RT-PCR, particularly with medium-high viral loads (Ct
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- 2021
13. Assessment of immunity against Yellow Fever virus infections in northeastern Nigeria using three serological assays
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John P. Momoh, Emmanuel M. Ezra, Mayomi Ikusemoran, Marycelin Baba, Bamidele Soji Oderinde, Bulama M. Kulloma, Musa Adamu, and Khalid M. Yahaya
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Adult ,Male ,Adolescent ,Population ,Nigeria ,Antibodies, Viral ,Serology ,Herd immunity ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Plaque reduction neutralization test ,Virology ,Yellow Fever ,medicine ,Humans ,030212 general & internal medicine ,education ,Child ,Aged ,Aged, 80 and over ,education.field_of_study ,business.industry ,Yellow fever ,Vaccination ,Immunity ,Middle Aged ,medicine.disease ,Antibodies, Neutralizing ,Infectious Diseases ,Immunization ,Child, Preschool ,030211 gastroenterology & hepatology ,Female ,Sample collection ,Yellow fever virus ,business ,Malaria - Abstract
Introduction Poor systematic surveillance for Yellow Fever virus (YFV) is primarily due to lack of affordable diagnostic facilities in resource constrained countries. Objectives This study aimed at providing evidence- based information on immunity against Yellow Fever with a view to assessing the possibility of the recent epidemics persisting in Nigeria. Methods Six hundred patients with febrile illness seeking malaria test in selected hospitals were tested for YFV antibody using three serological assays: IgM, Microneutralization test (MNT90 ) and Plaque reduction neutralization test (PRNT90 ). Results The three assays commonly detected YFV antibody (Ab) in 1.7% patients, MNT: IgM in 8.3%, IgM: PRNT in 7.1% and MNT: PRNT in 3.2%. Immunity against YF was significantly higher in Bauchi and Borno than Adamawa and children aged 0-9 years compared 20-29 years. YFV neutralizing antibody (nAb) strongly correlated with vaccination status of the patients. More unvaccinated patients had nAb compared with the vaccinated. Immunity against YF among treated patients with antibiotic and/or anti-malaria before sample collection inversely correlated with the untreated. YVnAb among unvaccinated indicates natural infections. Conclusion Acute YFV infections were mistaken for malaria and natural infections are ongoing. Individuals aged ≥20 should be targeted during mass vaccination campaigns. With low population immunity, repetitive YF epidemics in Nigeria is not yet over. The current policy on Yellow Fever vaccination in Nigeria still leaves a large unimmunized population at the risk of epidemics. Sufficient mass vaccination in combination with National Programme on Immunization remains key to averting YF epidemics. This article is protected by copyright. All rights reserved.
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- 2021
14. Distribution pattern and prevalence of West Nile virus infection in Nigeria from 1950 to 2020: a systematic review
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Peter Elisha Ghamba, Isa Muhammad Daneji, Muhammad Hamis Musa, Anthony Uchenna Emeribe, Pius Omoruyi Omosigho, Idris Nasir Abdullahi, Sanusi Musa, Lawal Olayemi, Odunayo O.R. Ajagbe, Chukwudi Crescent Okume, Justin Onyebuchi Nwofe, Zakariyya Muhammad Bello, Bamidele Soji Oderinde, Abubakar Muhammad Gwarzo, Samuel Ayobami Fasogbon, and Nkechi Blessing Onukegbe
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medicine.medical_specialty ,West Nile virus ,Nigeria ,medicine.disease_cause ,Immunoglobulin G ,03 medical and health sciences ,Zoonosis ,0302 clinical medicine ,Internal medicine ,Medicine ,Seroprevalence ,030212 general & internal medicine ,One Health ,biology ,business.industry ,General Medicine ,Odds ratio ,medicine.disease ,Confidence interval ,Immunoglobulin M ,030220 oncology & carcinogenesis ,biology.protein ,Pooled prevalence ,Systematic Review ,Antibody ,business - Abstract
OBJECTIVES West Nile virus (WNV) is a re-emerging mosquito-borne viral infection. This study investigated the pooled prevalence pattern and risk factors of WNV infection among humans and animals in Nigeria. METHODS A systematic review was conducted of eligible studies published in PubMed, Scopus, Google Scholar, and Web of Science from January 1, 1950 to August 30, 2020. Peer-reviewed cross-sectional studies describing WNV infections in humans and animals were systematically reviewed. Heterogeneity was assessed using the Cochrane Q statistic. RESULTS Eighteen out of 432 available search output were eligible and included for this study. Of which 13 and 5 were WNV studies on humans and animals, respectively. Although 61.5% of the human studies had a low risk of bias, they all had high heterogeneity. The South West geopolitical zone of Nigeria had the highest pooled prevalence of anti-WNV immunoglobulin M (IgM; 7.8% in humans). The pooled seroprevalence of anti-WNV IgM and immunoglobulin G (IgG) was 7.1% (95% confidence interval [CI], 5.9 to 8.3) and 76.5% (95% CI, 74.0 to 78.8), respectively. The WNV RNA prevalence was 1.9% (95% CI, 1.4 to 2.9), while 14.3% (95% CI, 12.9 to 15.8) had WNV-neutralizing antibodies. In animals, the pooled seroprevalence of anti-WNV IgM and IgG was 90.3% (95% CI, 84.3 to 94.6) and 3.5% (95% CI, 1.9 to 5.8), respectively, while 20.0% (95% CI, 12.9 to 21.4) had WNV-neutralizing antibodies. Age (odds ratio [OR], 3.73; 95% CI, 1.87 to 7.45; p
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- 2020
15. Seroprevalence and associated risk factors of hepatitis E virus infection among pregnant women attending Maiduguri teaching hospital, Nigeria
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Idris Nasir Abdullahi, Ballah Akawu Denue, Bamidele Soji Oderinde, C Chama, Babajide Ajayi, Semsari Latbone, Kayode Adelowo, Ibrahim Musa Kida, Iman U. Igwegbe, and S. O. Oyinloye
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medicine.medical_specialty ,business.industry ,Obstetrics ,Public health ,HEV Infection ,Risk Factor ,Faeco-Oral transmission ,Seroprevalence ,Nigeria ,Logistic regression ,Water consumption ,Teaching hospital ,Medicine ,Significant risk ,Risk factor ,business ,Hepatitis E virus infection - Abstract
Background:Hepatitis E Virus (HEV) is a major public health problem in developing countries and often fatal among pregnant women in the third trimester.Objectives:The study investigated the sero-prevalence and risk factors of HEV infection among pregnant women attendee of University of Maiduguri Teaching Hospital, Maiduguri, Nigeria.Methods:The cross-sectional study was carried out between 4thJanuary 2016 to 30thMay, 2016. One hundred and eighty blood samples from pregnant women who consented and enrolled for the study were analyzed for anti – HEV IgM using a quality assured commercial Enzyme Linked Immunosorbent Assay (ELISA) kit. Structured questionnaires were used to collate the sociodemographic characteristics and risk factor of study subjects.Results:Out of the 180 pregnant women sampled, the anti-HEV IgM seroprevalence of 13.3% was recorded. The seroprevalence was significantly higher in the age range of 31 – 35 years (26.5%) and least in age range ≤ 20 years (4.9%) (p=0.009). The highest seroprevalence was recorded in the third trimester 14.1% followed by second (p>0.05). After logistic regression, nature of toilet system, and source of water consumption were significant risk factors for active HEV infection (p˂0.05).Conclusion:Based on the 10.8 % pooled national prevalence of HEV infection in Nigeria, this study recorded a significantly high level of anti – HEV IgM seropositivity, an indication of recent and active HEV infection among pregnant women at the study area. Also, these infections are most among the pregnant women in their third trimester. HEV infection was related to personal, water and environmental hygiene.
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- 2020
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16. Prevalence Pattern of Chikungunya Virus Infection in Nigeria: A Four Decade Systematic Review and Meta-analysis
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Lawal Dahiru Rogo, Idris Nasir Abdullahi, Yusuf Muhammed, Azeez Oyebanji Akande, and Bamidele Soji Oderinde
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0301 basic medicine ,business.industry ,030106 microbiology ,030231 tropical medicine ,Public Health, Environmental and Occupational Health ,Neglected Disease ,Febrile illness ,virus diseases ,General Medicine ,Review ,medicine.disease_cause ,Microbiology ,03 medical and health sciences ,Global population ,0302 clinical medicine ,Infectious Diseases ,Meta-analysis ,Environmental health ,parasitic diseases ,Chikungunya Virus Infection ,Medicine ,Parasitology ,Chikungunya ,business - Abstract
Chikungunya (CHIK) is a re-emerging and myo-arthritogenic arboviral infection that has affected significant global population. However, CHIK is a neglected disease in Nigeria. This study aimed to estimate the pooled prevalence pattern of CHIK virus infection in Nigeria. A systematic review of eligible articles was conducted from “PubMed”, “Scopus”, “Google Scholar” and “Web of Science”, between January 1980 to February 2020. Peer-reviewed articles describing CHIKV infection in cross-sectional studies were systematically reviewed. Random-effect model was used to pool the prevalence of CHIKV infection and associated sociodemographic data reported from eligible studies. In total, there were 10 published articles on CHIKV infection. Of these, 7 were cross-sectional studies, which comprised of 1347 pooled participants. The pooled anti-CHIKV IgM and IgG seroprevalence were 26.7% (95% CI: 23.2 – 30.4) and 29.3% (95% CI: 26.2 -32.6), respectively. Of the pooled studies, there were 3.8% (95% CI: 2.0-6.4) CHIKV RNA positive cases and 46.1% prevalence of CHIKV neutralizing antibodies. Of the 6 geopolitical zones in Nigeria, Northeast had the highest serological evidence of CHIKV infection. There was a significance association between the prevalence of anti-CHIKV and geopolitical zones of Nigeria (χ²= 70.04; p˂0.0001). Sex (p ˂0.0001; OR= 1.87 [1.47 – 2.38]) and level of education (p ˂0.0001; OR= 2.74 [1.89 – 3.95]) were significant risk factors for pooled anti-CHIKV IgM seropositivity. However, no significant association was found with other sociodemographic variables (p ˃0.05). Although there was paucity of data on CHIKV research in Nigeria, this meta-analysis revealed a high prevalence of CHIKV infection in the country.
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- 2020
17. Why is severe dengue rare in Nigeria: an ecologicepidemiology and host genetic perspective?
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Bamidele Soji Oderinde, Chisom Emmanuel Okechukwu, and Idris Nasir Abdullahi
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Letter to the Editor
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- 2019
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18. Prevalence of locally undetected acute infections of Flaviviruses in North-Eastern Nigeria
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Tea Carletti, Alessandro Marcello, Bamidele Soji Oderinde, Marycelin Baba, and Erick Mora-Cárdenas
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Adult ,Male ,Cancer Research ,Adolescent ,Arbovirus Infections ,viruses ,Prevalence ,Nigeria ,Dengue virus ,Antibodies, Viral ,medicine.disease_cause ,Flavivirus Infections ,Serology ,Zika virus ,Dengue fever ,Young Adult ,03 medical and health sciences ,Seroepidemiologic Studies ,Virology ,medicine ,Humans ,Child ,Aged ,030304 developmental biology ,0303 health sciences ,biology ,030306 microbiology ,Flavivirus ,Infant, Newborn ,Infant ,virus diseases ,Middle Aged ,biology.organism_classification ,medicine.disease ,Infectious Diseases ,Immunoglobulin M ,Child, Preschool ,Immunoglobulin G ,Female ,Usutu virus - Abstract
The burden of Arboviral infections is largely underestimated in Africa, particularly in North-Eastern Nigeria. A total of 200 serum samples were collected from patients exhibiting febrile illness who visited the State Specialist Hospital in Maiduguri for medical attention between March and April 2018. Sera were tested for Flavivirus RNA by a pan-flaviviral primer set using hemi-nested RT PCR. Twenty-six samples were positive for flaviviral RNA and sequence analysis indicated a high number of West Nile virus infections and one case of Zika virus. In-house recombinant NS1-based IgM ELISA indicated 47 % of WNV and 22 % of ZIKV infections. These data were also compared to commercially available assays for West Nile and Zika viruses. Finally, NS1 IgG ELISA was conducted for Dengue, Zika, West Nile and Usutu viruses. For serum samples detected by at least one flavivirus, 945% tested positive by NS1 IgG antibodies, while only 5.5 % of the patients were negative for all. To conclude, there is a high prevalence rate of arbovirus infections in the region, including Zika and Usutu viruses that were not previously detected. Interestingly, the analysis was conducted using in–house tools to allow the implementation of a sustainable surveillance protocol locally.
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- 2020
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19. Immunostimulatory Effect of Levamisole on the Immune Response of Goats to Peste des petits ruminants (PPR) Vaccination
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S.S. Baba, Undiandeye Jude Undiandeye, Abdul-Dahiru El-Yuguda, and Bamidele Soji Oderinde
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Peste-des-Petits-Ruminants ,Veterinary medicine ,biology ,business.industry ,medicine.drug_class ,Levamisole ,Immunostimulant ,Vaccination ,Titer ,Immune system ,Immunology ,medicine ,biology.protein ,medicine.symptom ,business ,Neutralizing antibody ,Weight gain ,medicine.drug - Abstract
The use of Levamisole hydrochloride as an immunostimulant has been successful in the control of certain diseases such as Derzsy’s disease in chicken as well as in increasing lymphocytes and weight gain in pigs. However, its use as immunostimulant in the prevention of Peste des petits ruminants (PPR) in goats has not been investigated. In this study, the use of Levamisole in enhancing immune response to PPR vaccination including its effects on weight gain was investigated among groups of goats (groups A, B, C and D). Virus neutralization test was used to determine the antibody profile in vaccinated goats while the total and differential leucocyte counts and body mass index (BMI) were determined using standard procedures. Goats in group A (Levamisole primed and PPR vaccinated) seroconverted to more than 3-folds of the initial pre-vaccination geometric mean titre (GMT) of neutralizing antibody beginning from second week post-vaccination and remained high throughout the period of the experiment. Similarly, there was significant increase (p 0.05) in BMI of animals in other groups throughout the period of the experiment. The results of this study further confirm the immunostimulatory effect of Levamisole when used in combination with a vaccine.
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- 2014
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20. High Variety of Known and New RNA and DNA Viruses of Diverse Origins in Untreated Sewage
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Chunlin Wang, Eric Delwart, K. E. Wommack, Beatrix Kapusinszky, Rachel L. Marine, Bamidele Soji Oderinde, Terry Fei Fan Ng, Peter Simmonds, and Ladaporn Bodhidatta
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viruses ,Amino Acid Motifs ,Molecular Sequence Data ,Immunology ,Nigeria ,Reoviridae ,Genome, Viral ,Microbiology ,Astrovirus ,Nepal ,Virology ,Secoviridae ,Humans ,RNA Viruses ,Amino Acid Sequence ,Conserved Sequence ,Phylogeny ,Genetics ,Likelihood Functions ,Sequence Homology, Amino Acid ,Sewage ,biology ,Nucleotides ,DNA Viruses ,Computational Biology ,Genetic Variation ,High-Throughput Nucleotide Sequencing ,Sequence Analysis, DNA ,Partitiviridae ,Virgaviridae ,Thailand ,biology.organism_classification ,Tymoviridae ,United States ,Hepeviridae ,Genetic Diversity and Evolution ,Kobuvirus ,Insect Science ,DNA, Circular - Abstract
Deep sequencing of untreated sewage provides an opportunity to monitor enteric infections in large populations and for high-throughput viral discovery. A metagenomics analysis of purified viral particles in untreated sewage from the United States (San Francisco, CA), Nigeria (Maiduguri), Thailand (Bangkok), and Nepal (Kathmandu) revealed sequences related to 29 eukaryotic viral families infecting vertebrates, invertebrates, and plants (BLASTx E score, −4 ), including known pathogens (>90% protein identities) in numerous viral families infecting humans ( Adenoviridae , Astroviridae , Caliciviridae , Hepeviridae , Parvoviridae , Picornaviridae , Picobirnaviridae , and Reoviridae ), plants ( Alphaflexiviridae , Betaflexiviridae , Partitiviridae , Sobemovirus , Secoviridae , Tombusviridae , Tymoviridae , Virgaviridae ), and insects ( Dicistroviridae , Nodaviridae , and Parvoviridae ). The full and partial genomes of a novel kobuvirus, salivirus, and sapovirus are described. A novel astrovirus (casa astrovirus) basal to those infecting mammals and birds, potentially representing a third astrovirus genus, was partially characterized. Potential new genera and families of viruses distantly related to members of the single-stranded RNA picorna-like virus superfamily were genetically characterized and named Picalivirus , Secalivirus , Hepelivirus , Nedicistrovirus , Cadicistrovirus , and Niflavirus . Phylogenetic analysis placed these highly divergent genomes near the root of the picorna-like virus superfamily, with possible vertebrate, plant, or arthropod hosts inferred from nucleotide composition analysis. Circular DNA genomes distantly related to the plant-infecting Geminiviridae family were named Baminivirus , Nimivirus , and Niminivirus . These results highlight the utility of analyzing sewage to monitor shedding of viral pathogens and the high viral diversity found in this common pollutant and provide genetic information to facilitate future studies of these newly characterized viruses.
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- 2012
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21. A survey for neutralizing antibodies to the three types of poliovirus among children in maiduguri, Nigeria
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B.A. Haruna, Bamidele Soji Oderinde, M.M. Baba, N.N. Shidali, Alessandro Marcello, J.P. Ambe, O. Ogunmola, and M. Talle
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Male ,Population ,Nigeria ,Antibodies, Viral ,medicine.disease_cause ,complex mixtures ,Polio vaccine ,Neutralization Tests ,Seroepidemiologic Studies ,Immunity ,Virology ,Poliomyelitis eradication ,medicine ,Humans ,education ,education.field_of_study ,business.industry ,Poliovirus ,Infant ,medicine.disease ,Antibodies, Neutralizing ,Polio Vaccination ,Poliomyelitis ,Poliovirus Vaccines ,Vaccination ,Infectious Diseases ,Child, Preschool ,Immunology ,Female ,business - Abstract
The milestone in polio eradication program is to protect effectively children aged 0–5 years against the three serotypes of poliovirus. It became necessary to measure the level of neutralizing antibodies to the three poliovirus types in an endemic State in Nigeria. Neutralizing antibodies to the poliovirus types among children aged 0–5 years was estimated using micro neutralization assay. Of 129 children, 99 (76.8%), 95 (73.6%), and 95 (73.6%) had neutralizing antibodies with the geometric mean titer of 42.7, 31.3, and 33.2 for the poliovirus type 1, 2, and 3, respectively. Fifty-three percent of the children were protected against the three types of poliovirus. Combination of poliovirus types 1 and 2, 1 and 3, and 2 and 3 were neutralized by 62.8, 58.9, and 61.2% of the children studied, respectively. Only poliovirus type 1 induced antibody titres ≥1:1,024. The number of children with neutralizing antibodies after receiving three doses was significantly higher than those who received one or two doses of oral polio vaccine (P ≤ 0.05). However, those who received more than three doses of oral polio vaccine showed no significant difference in their antibody response. The existence of immunity gap poses a risk of re-emergence of the paralytic poliovirus. The existence of unimmunized and unprotected children along with high birth rate could impede the success of polio vaccination in Nigeria. Elimination of non-compliance to polio vaccine, promotion of health education and documented evidence of vaccination of each child with the parents may facilitate the success of polio eradication program in Nigeria. J. Med. Virol. 84:691–696, 2012. © 2011 Wiley Periodicals, Inc.
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- 2012
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22. Evidence of arbovirus co-infection in suspected febrile malaria and typhoid patients in Nigeria
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Hauwa Abdulmaleek, Marycelin Baba, Christopher H. Logue, Thomas R. Laws, Pierlanfranco D' Agaro, Alessandro Marcello, Bamidele Soji Oderinde, James S. Lewis, Joshua Williams, Roger Hewson, Baba, M, Logue, Ch, Oderinde, B, Abdulmaleek, H, Williams, J, Lewis, J, Laws, Tr, Hewson, R, Marcello, A, and D'Agaro, Pierlanfranco
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Male ,viruses ,Widal test ,medicine.disease_cause ,Antibodies, Viral ,Dengue fever ,Dengue ,Chikungunya ,Malaria, Falciparum ,Child ,Aged, 80 and over ,Arbovirus ,medicine.diagnostic_test ,Coinfection ,virus diseases ,General Medicine ,Middle Aged ,Malaria ,Infectious Diseases ,Child, Preschool ,Female ,Adult ,Adolescent ,Fever ,Arbovirus Infections ,Nigeria ,Biology ,Microbiology ,Typhoid fever ,Young Adult ,Plaque reduction neutralization test ,Neutralization Tests ,Virology ,parasitic diseases ,medicine ,Animals ,Humans ,Typhoid Fever ,Aged ,Infant ,biochemical phenomena, metabolism, and nutrition ,medicine.disease ,Arboviru ,Immunology ,Parasitology ,Arboviruses - Abstract
Introduction: Clinical symptoms of malaria and typhoid infections are virtually indistinguishable from those initially seen in many arbovirus infections. Here we describe arbovirus co-infection detected in 310 sera samples collected from febrile, clinically suspected malaria/typhoid patients in Borno State, Nigeria. Methodology: Tested initially for Plasmodium falciparum by microscopy and for Salmonella Typhi by Widal test, samples were subsequently tested for chikungunya (CHIKV), yellow fever (YFV), dengue (DENV) and West Nile viruses (WNV) by plaque reduction neutralization test. Results: While 92% of patients tested positive for malaria, typhoid, an arbovirus infection, or a combination of one or more of these types of infections, less than 1% of the patients tested positive for malaria alone and only 3.9% tested positive for typhoid alone. Approximately half of the patients tested positive for infection with a single arbovirus (48%) regardless of the presence or absence of malaria or typhoid. Of those who showed 90% to 95% virus neutralization, 67.7% had neutralizing antibodies against DENV, 50% against CHIKV, 25% against WNV and 8.7% against YFV. Eight per cent tested negative against all six pathogens, suggesting that other arboviruses not tested for in this study may also be circulating in Nigeria. Conclusions: The results suggest that misdiagnosis of arbovirus co-infections as malaria infections, combined with a lack of virus surveillance and underreporting of arbovirus infections, increases the potential for undetected and uncontrolled spread of important vector-borne arboviruses becoming serious underlying public health concerns in Nigeria.
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- 2013
23. Human Bocaviruses Are Highly Diverse, Dispersed, Recombination Prone, and Prevalent in Enteric Infections
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Olfa Bahri, Peter Simmonds, Henda Triki, Linlin Li, Eric Delwart, Elizabeth Slikas, Ladaporn Bodhidatta, David Bukbuk, Bamidele Soji Oderinde, Joanne M. Bartkus, Marycelin Baba, Amit Kapoor, Orntipa Sethabutr, John M. Besser, University of California [San Francisco] (UCSF), University of California, Blood Systems Research Institute, University of California-University of California, University of Edinburgh, Armed Forces Research Institute of Medical Sciences [Bangkok] (AFRIMS), Institut Pasteur de Tunis, Réseau International des Instituts Pasteur (RIIP), University of Maiduguri, Molecular Epidemiology Unit, Public Health Laboratory Division, Minnesota Dept. of Health, and CRLCC Paul Strauss
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MESH: Sequence Analysis, DNA ,Bocaparvovirus ,MESH: Sequence Homology, Amino Acid ,[SDV]Life Sciences [q-bio] ,Prevalence ,[SDV.MHEP.PSR]Life Sciences [q-bio]/Human health and pathology/Pulmonology and respiratory tract ,MESH: Genotype ,Feces ,Human bocavirus ,MESH: Child ,Immunology and Allergy ,MESH: Genetic Variation ,Child ,MESH: Phylogeny ,Phylogeny ,Recombination, Genetic ,0303 health sciences ,biology ,MESH: Feces ,MESH: Infant ,Gastroenteritis ,3. Good health ,Diarrhea ,Infectious Diseases ,MESH: Young Adult ,Child, Preschool ,MESH: Recombination, Genetic ,medicine.symptom ,MESH: Tunisia ,MESH: Nigeria ,Adult ,Tunisia ,Adolescent ,Genotype ,Flaccid paralysis ,Molecular Sequence Data ,Nigeria ,MESH: Parvoviridae Infections ,Article ,Parvoviridae Infections ,Viral Proteins ,Young Adult ,03 medical and health sciences ,medicine ,Humans ,Tropism ,MESH: Prevalence ,030304 developmental biology ,MESH: Adolescent ,MESH: Molecular Sequence Data ,MESH: Humans ,Sequence Homology, Amino Acid ,030306 microbiology ,Parvovirus ,MESH: Child, Preschool ,Genetic Variation ,Infant ,MESH: Adult ,[SDV.MHEP.HEG]Life Sciences [q-bio]/Human health and pathology/Hépatology and Gastroenterology ,Sequence Analysis, DNA ,biology.organism_classification ,Virology ,MESH: Viral Proteins ,MESH: Gastroenteritis ,respiratory tract diseases ,MESH: Human bocavirus - Abstract
International audience; A new species of parvovirus, tentatively named human bocavirus 4 (HBoV4), was genetically characterized. Among 641 feces samples obtained from children and adults, the most commonly detected bocavirus species were, in descending order, HBoV2, HBoV3, HBoV4, and HBoV1, with an HBoV2 prevalence of 21% and 26% in Nigerian and Tunisian children, respectively. HBoV3 or HBoV4 species were found in 12 of 192 patients with non-polio acute flaccid paralysis in Tunisia and Nigeria and 0 of 96 healthy Tunisian contacts (P = .01). Evidence of extensive recombination at the NP1 and VP1 gene boundary between and within bocavirus species was found. The high degree of genetic diversity seen among the human bocaviruses found in feces specimens, relative to the highly homogeneous HBoV1, suggest that this worldwide-distributed respiratory pathogen may have recently evolved from an enteric bocavirus after acquiring an expanded tropism favoring the respiratory tract. Elucidating the possible role of the newly identified enteric bocaviruses in human diseases, including acute flaccid paralysis and diarrhea, will require further epidemiological studies.
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- 2010
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24. A Novel Picornavirus Associated with Gastroenteritis
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David Bukbuk, Amit Kapoor, Olga Blinkova, Bamidele Soji Oderinde, Eric Delwart, Linlin Li, Hinda Triki, Olfa Bahri, Carl J. Mason, John M. Besser, Prativa Pandey, Chunlin Wang, Farbod Babrzadeh, Joanne M. Bartkus, Marycelin Baba, Joseph Victoria, University of California San Francisco and Blood Systems Research Institute, University of California [San Francisco] (UCSF), University of California-University of California-Blood Systems Research Institute-San Francisco, Dept. of Laboratory Medicine, University of California-University of California, Stanford Genome Technology Center, Stanford University, CIWEC Clinic Travel Medicine Center, Katmandu, Department of Enteric Diseases, Armed Forces Research Institute of Medical Sciences [Bangkok] (AFRIMS), Laboratoire de Virologie Clinique, Référence Régional OMS pour la Poliomyélite et la Rougeole - Laboratory of Clinical Virology, WHO Regional Reference Laboratory on Poliomyelitis and Measles, Institut Pasteur de Tunis, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)-Organisation Mondiale de la Santé / World Health Organization Office (OMS / WHO), WHO National Polio Laboratory, University of Maiduguri Teaching Hospital,Borno State, Molecular Epidemiology Unit, Public Health Laboratory Division, Minnesota Dept. of Health, CRLCC Paul Strauss, and Stanford University [Stanford]
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Picornavirus ,viruses ,[SDV]Life Sciences [q-bio] ,Immunology ,Molecular Sequence Data ,Prevalence ,Genome, Viral ,Picornaviridae ,Microbiology ,Genome ,Virus ,03 medical and health sciences ,Viral Proteins ,Phylogenetics ,Virology ,medicine ,Humans ,Amino Acid Sequence ,Viral shedding ,Phylogeny ,030304 developmental biology ,0303 health sciences ,Picornaviridae Infections ,biology ,Base Sequence ,030306 microbiology ,Reverse Transcriptase Polymerase Chain Reaction ,biology.organism_classification ,3. Good health ,Gastroenteritis ,Diarrhea ,Genetic Diversity and Evolution ,Insect Science ,medicine.symptom ,Aichi virus - Abstract
A novel picornavirus genome was sequenced, showing 42.6%, 35.2%, and 44.6% of deduced amino acid identities corresponding to the P1, P2, and P3 regions, respectively, of the Aichi virus. Divergent strains of this new virus, which we named salivirus, were detected in 18 stool samples from Nigeria, Tunisia, Nepal, and the United States. A statistical association was seen between virus shedding and unexplained cases of gastroenteritis in Nepal ( P = 0.0056). Viruses with approximately 90% nucleotide similarity, named klassevirus, were also recently reported in three cases of unexplained diarrhea from the United States and Australia and in sewage from Spain, reflecting a global distribution and supporting a pathogenic role for this new group of picornaviruses.
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- 2009
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25. Preliminary Study on the Prevalence of West Nile Virus Antibody among Horses, Donkeys and Camels in Borno State, Nigeria
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S.S. Baba, Awal Saidu, Obinna Damian NNnadi, Kenas Dunama Hamman, Abduldahiru El Yuguda, and Bamidele Soji Oderinde
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education.field_of_study ,Veterinary medicine ,biology ,business.industry ,viruses ,Population ,Horse ,Virology ,Virus ,Serology ,Virus-neutralizing Antibody ,biology.protein ,Medicine ,Donkey ,Antibody ,education ,business ,Neutralizing antibody - Abstract
In spite of several serological evidences for the presence of West Nile (WN) virus in Nigeria, the host range of the virus is not fully understood. In this study, the prevalence of the WN virus antibody was determined among horse, donkey and camel populations in Borno state, Nigeria. Two hundred and fifty serum samples comprising of 96 sera from each of horses and camels and 58 from donkeys were tested for presence of WN virus neutralizing antibody. An overall prevalence of WN virus neutralizing antibody of 13.2% was noted in the population of animals tested. Significant difference (P≤0.05) in prevalence was observed between the animals tested. Highest prevalence (17.7%) was noted in camels followed by horses (11.5%) and donkeys (8.6%). The results of this study confirmed the prevalence of WV virus antibody in camels in Nigeria and represented the first serosurvey for WN virus activities among horses and donkeys in this part of the country. There is considerable activity of the virus in the study area and provided evidence for the potential roles this group of animals could play in the epidemiology of WN virus infection in Nigeria.
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- 2014
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26. Sabin and wild polioviruses from apparently healthy primary school children in northeastern Nigeria
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M.M. Baba, M.M. Jarmai, P.Z. Patrick, and Bamidele Soji Oderinde
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Immunity, Herd ,Male ,Serotype ,Adolescent ,Genotype ,viruses ,Nigeria ,medicine.disease_cause ,complex mixtures ,Herd immunity ,Feces ,Polio vaccine ,Virology ,Poliomyelitis eradication ,medicine ,Humans ,Child ,Immunization Programs ,Transmission (medicine) ,business.industry ,Poliovirus ,Vaccination ,Sequence Analysis, DNA ,medicine.disease ,Virus Shedding ,Poliomyelitis ,Infectious Diseases ,Child, Preschool ,Poliovirus Vaccine, Oral ,Carrier State ,Female ,business - Abstract
Despite significant success of the Global Polio Eradication Initiative (GPEI) in Nigeria, Afghanistan, India, Pakistan, wild poliovirus still occurs due to persistently high proportions of under and unimmunized children. The study aimed at determining the type of poliovirus often excreted into the environment. Four hundred nine fecal samples collected from apparently healthy school children aged 5–16 years in Borno and Adamawa States, northeastern Nigeria, were tested for poliovirus by tissue culture technique. The isolates were characterized further by intratypic differentiation testing and genetic sequencing. Three wild poliovirus type, 11 Sabin type, combination of Sabin-types 1 + 2 and 2 + 3 poliovirus, and 22 non-polio enteroviruses were obtained. The continued excretion of wild-type poliovirus among children above 5 years old vaccinated with oral polio vaccine contributes to the persistent circulation of these viruses in the environment and may limit the population immunity. However, the excreted Sabin poliovirus is capable of immunizing the unvaccinated children and promotes herd immunity. Similarly, the excretion of combination of two polio serotypes indicates the child susceptibility to the missing serotype (s) and therefore indicates an immunity gap. The common unhygienic practices in the environment could aid the spread of these viruses through oral–fecal route. Asymptomatic transmission of wild poliovirus among older oral polio vaccine-vaccinated children poses a serious threat to polio eradication program in Nigeria and therefore, environmental and serological surveillance with larger sample size are important for monitoring poliovirus circulation in Nigeria. J. Med. Virol. 84:358–364, 2012. © 2011 Wiley Periodicals, Inc.
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