296 results on '"Bernhardt PV"'
Search Results
2. Elucidating the mechanism of the Ley-Griffith (TPAP) alcohol oxidation
- Author
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Zerk, TJ, Moore, PW, Harbort, JS, Chow, S, Byrne, L, Koutsantonis, GA, Harmer, JR, Martinez, M, Williams, CM, Bernhardt, PV, Zerk, TJ, Moore, PW, Harbort, JS, Chow, S, Byrne, L, Koutsantonis, GA, Harmer, JR, Martinez, M, Williams, CM, and Bernhardt, PV
- Abstract
The Ley-Griffith reaction is utilized extensively in the selective oxidation of alcohols to aldehydes or ketones. The central catalyst is commercially available tetra-n-propylammonium perruthenate (TPAP, n-Pr4N[RuO4]) which is used in combination with the co-oxidant N-methylmorpholine N-oxide (NMO). Although this reaction has been employed for more than 30 years, the mechanism remains unknown. Herein we report a comprehensive study of the oxidation of diphenylmethanol using the Ley-Griffith reagents to show that the rate determining step involves a single alcohol molecule, which is oxidised by a single perruthenate anion; NMO does not appear in rate law. A key finding of this study is that when pure n-Pr4N[RuO4] is employed in anhydrous solvent, alcohol oxidation initially proceeds very slowly. After this induction period, water produced by alcohol oxidation leads to partial formation of insoluble RuO2, which dramatically accelerates catalysis via a heterogeneous process. This is particularly relevant in a synthetic context where catalyst degradation is usually problematic. In this case a small amount of n-Pr4N[RuO4] must decompose to RuO2 to facilitate catalysis.
- Published
- 2017
3. Validating Eaton's Hypothesis: Cubane as a Benzene Bioisostere
- Author
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Chalmers, BA, Xing, H, Houston, S, Clark, C, Ghassabian, S, Kuo, A, Cao, B, Reitsma, A, Murray, C-EP, Stok, JE, Boyle, GM, Pierce, CJ, Littler, SW, Winkler, DA, Bernhardt, PV, Pasay, C, De Voss, JJ, McCarthy, J, Parsons, PG, Walter, GH, Smith, MT, Cooper, HM, Nilsson, SK, Tsanaktsidis, J, Savage, GP, Williams, CM, Chalmers, BA, Xing, H, Houston, S, Clark, C, Ghassabian, S, Kuo, A, Cao, B, Reitsma, A, Murray, C-EP, Stok, JE, Boyle, GM, Pierce, CJ, Littler, SW, Winkler, DA, Bernhardt, PV, Pasay, C, De Voss, JJ, McCarthy, J, Parsons, PG, Walter, GH, Smith, MT, Cooper, HM, Nilsson, SK, Tsanaktsidis, J, Savage, GP, and Williams, CM
- Abstract
Pharmaceutical and agrochemical discovery programs are under considerable pressure to meet increasing global demand and thus require constant innovation. Classical hydrocarbon scaffolds have long assisted in bringing new molecules to the market place, but an obvious omission is that of the Platonic solid cubane. Eaton, however, suggested that this molecule has the potential to act as a benzene bioisostere. Herein, we report the validation of Eaton's hypothesis with cubane derivatives of five molecules that are used clinically or as agrochemicals. Two cubane analogues showed increased bioactivity compared to their benzene counterparts whereas two further analogues displayed equal bioactivity, and the fifth one demonstrated only partial efficacy. Ramifications from this study are best realized by reflecting on the number of bioactive molecules that contain a benzene ring. Substitution with the cubane scaffold where possible could revitalize these systems, and thus expedite much needed lead candidate identification.
- Published
- 2016
4. A novel, molybdenum-containing methionine sulfoxide reductase supports survival of Haemophilus influenzae in an in vivo model of infection
- Author
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Dhouib, R, Othman, DSMP, Lin, V, Lai, XJ, Wijesinghe, HGS, Essilfie, AT, Davis, A, Nasreen, M, Bernhardt, PV, Hansbro, PM, McEwan, AG, Kappler, U, Dhouib, R, Othman, DSMP, Lin, V, Lai, XJ, Wijesinghe, HGS, Essilfie, AT, Davis, A, Nasreen, M, Bernhardt, PV, Hansbro, PM, McEwan, AG, and Kappler, U
- Abstract
© 2016 Dhouib, Othman, Lin, Lai, Wijesinghe, Essilfie, Davis, Nasreen, Bernhardt, Hansbro, McEwan and Kappler. Haemophilus influenzae is a host adapted human mucosal pathogen involved in a variety of acute and chronic respiratory tract infections, including chronic obstructive pulmonary disease and asthma, all of which rely on its ability to efficiently establish continuing interactions with the host. Here we report the characterization of a novel molybdenum enzyme, TorZ/MtsZ that supports interactions of H. influenzae with host cells during growth in oxygen-limited environments. Strains lacking TorZ/MtsZ showed a reduced ability to survive in contact with epithelial cells as shown by immunofluorescence microscopy and adherence/invasion assays. This included a reduction in the ability of the strain to invade human epithelial cells, a trait that could be linked to the persistence of H. influenzae. The observation that in a murine model of H. influenzae infection, strains lacking TorZ/MtsZ were almost undetectable after 72 h of infection, while ~3.6 × 103 CFU/mL of the wild type strain were measured under the same conditions is consistent with this view. To understand how TorZ/MtsZ mediates this effect we purified and characterized the enzyme, and were able to show that it is an S- and N-oxide reductase with a stereospecificity for S-sulfoxides. The enzyme converts two physiologically relevant sulfoxides, biotin sulfoxide and methionine sulfoxide (MetSO), with the kinetic parameters suggesting that MetSO is the natural substrate of this enzyme. TorZ/MtsZ was unable to repair sulfoxides in oxidized Calmodulin, suggesting that a role in cell metabolism/energy generation and not protein repair is the key function of this enzyme. Phylogenetic analyses showed that H. influenzae TorZ/MtsZ is only distantly related to the Escherichia coli TorZ TMAO reductase, but instead is a representative of a new, previously uncharacterized clade of molybdenum enzyme that is widely distri
- Published
- 2016
5. Viridicatumtoxins: Exploring structural diversity and antibiotic properties
- Author
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Shang, Z, primary, Salim, AA, additional, Khalil, ZG, additional, Quezada, M, additional, Bernhardt, PV, additional, and Capon, RJ, additional
- Published
- 2015
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6. Copper redistribution in murine macrophages in response to Salmonella infection
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Achard, MES, Stafford, SL, Bokil, NJ, Chartres, J, Bernhardt, PV, Schembri, MA, Sweet, MJ, Mcewan, AG, Achard, MES, Stafford, SL, Bokil, NJ, Chartres, J, Bernhardt, PV, Schembri, MA, Sweet, MJ, and Mcewan, AG
- Abstract
The movement of key transition metal ions is recognized to be of critical importance in the interaction between macrophages and intracellular pathogens. The present study investigated the role of copper in mouse macrophage responses to Salmonella enterica sv. Typhimurium. The copper chelator BCS (bathocuproinedisulfonic acid, disodium salt) increased intracellular survival of S. Typhimurium within primary mouse BMM (bone-marrow-derived macrophages) at 24 h post-infection, implying that copper contributed to effective host defence against this pathogen. Infection of BMM with S. Typhimurium or treatment with the TLR (Toll-like receptor) 4 ligand LPS (lipopolysaccharide) induced the expression of several genes encoding proteins involved in copper transport [Ctr (copper transporter) 1, Ctr2 and Atp7a (copper-transportingATPase 1)], as well as the multi-copper oxidase Cp (caeruloplasmin). Both LPS and infectionwith S. Typhimurium triggered copper accumulation within punctate intracellular vesicles (copper 'hot spots') in BMM as indicated by the fluorescent reporter CS1 (copper sensor 1). These copper hot spots peaked in their accumulation at approximately 18 h post-stimulation and were dependent on copper uptake into cells. Localization studies indicated that the copper hot spotswere in discrete vesicles distinct from Salmonella containing vacuoles and lysosomes. We propose that copper hot spot formation contributes to antimicrobial responses against professional intracellular bacterial pathogens. © The Authors Journal compilation © 2012 Biochemical Society.
- Published
- 2012
7. Metal-Directed Synthesis of Macrocyclic Tetraamines With Pendant Nitro or Amine Groups, Based on trans-Cyclohexane-1,2-diamine
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Bernhardt, PV, primary, Comba, P, additional, Elliott, BL, additional, Lawrance, GA, additional, Maeder, M, additional, Oleary, MA, additional, Wei, G, additional, and Wilkes, EN, additional
- Published
- 1994
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8. Quinquedentate Coordination of 3-[(2'-Amino-ethyl)amino]-2-[(2″-aminoethyl)aminomethyl]propionic Acid (LH). Crystal Structure of trans-[Co(L)Cl][ClO4].H2O And Molecular Mechanics Examination of Isomers
- Author
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Bernhardt, PV, primary, Hambley, TW, additional, Lawrance, GA, additional, and Molloy, KJ, additional
- Published
- 1994
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9. Dicopper(II) Complexes of Spiro Macrobicycles With Aza and Thia Aza Donor Sets
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Bernhardt, PV, primary, Comba, P, additional, Gahan, LR, additional, and Lawrance, GA, additional
- Published
- 1990
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10. Crystal Structures of [H4L](ClO4)4.6H2O And [Zn(H2L)(S2O6)2].4H2O (L = 6,13-Dimethyl-1,4,8,11-tetraazacyclotetradecane-6,13-diamine)
- Author
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Bernhardt, PV, primary, Hambley, TW, additional, and Lawrance, GA, additional
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- 1990
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11. Facile Metal-Directed Synthesis and Crystal Structure of a New Amino Acid Ester, Methyl 3-[(2-Aminoethyl)amino]-2-[(2-aminoethyl)aminomethyl]propionate, as the Copper(II) Complex
- Author
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Bernhardt, PV, Lawrance, GA, Skelton, BW, and White, AH
- Abstract
Condensation of bis (ethane-1,2-diamine) copper(II) perchlorate with formaldehyde and diethyl malonate in basic methanol generates the new amino acid ester complex (ethyl hydrogen bis [(2-aminoethyl ) aminomethyl ] malonate )copper(II) perchlorate, [Cu(1)] (ClO4)2. Base- catalysed ester hydrolysis and decarboxylation in methanol of[Cu(1)]2+ yields, with reesterification, (methyl 3-[(2-aminoethy )amino]-2-[(2-aminoethyl) aminomethyl ]propionate)copper(II) perchlorate, [Cu(2)](ClO4)2. This complex crystallizes in the monoclinic space group P21/c, a 12.763(6), b 9.176(2), c 16.32(2)Ǻ, β 112.49 (6)°, Z 4, R 0.054 for 2626 independent 'observed' reflections. The copper ion lies in a near plane of four nitrogens with perchlorates occupying axial sites.
- Published
- 1990
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12. Coordination of the Hexacyanoferrate(III) Anion to a Polyammonium Macrocycle. Crysta -Structure of [H4L]1.5[Fe(CN)6]2 (L=6,13-Dimethyl-1,4,8,11-tetraaza-cyclotetradecane-6,13-diamine)
- Author
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Bernhardt, PV, Lawrance, GA, Skelton, BW, and White, AH
- Abstract
Crystals of [H4L]1.5[Fe(CN)6]2.3H2O.¾HCN form readily from an aqueous solution of L=6HCI (L = 6,13-dimethyl-1,4,8,11- tetraazacyclotetradecane-6,13-diamine) and Na3 [Fe(CN)6]. The compound is monoclinic, space group P21/c, a 7.982(6), b 20.785(3), c 26.81(1) , β 101.37(5), Z = 4. Protonation is complete at the terminal primary nitrogens, but in the ring one trans pair is protonated and the other not, with short trans H…H distances. Hydrogen-bonding interactions are a feature of the structure, but are concentrated more strongly at the terminal NH3+ groups. Interactions of [Fe(CN)6]3- nitrogens with both terminal amine protons and macrocycle ring amine protons are observed, and this structure represents a further example of a 'super complex' involving a complex anion and a protonated polyaza macrocycle.
- Published
- 1989
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13. Condensations of Ethane-1,2-Diamine, Formaldehyde and Ammonia (or Nitroethane) Directed by Nickel(II) or Copper(II). Crystal Structure of (8-Methyl-8-nitro-1,3,6,10,13,15-hexaazatricyclo[13.1.1.1 13,15]octadecane)nickel(II) Perchlorate
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Bernhardt, PV, Curtis, LS, Curtis, NF, Lawrance, GA, Skelton, BW, and White, AH
- Abstract
Both nickel(II) and copper(II) complexes of the sterically hindered linear tetraamines 1,3,5,7-tetra-azabicyclo [3.3.l]nonane-3,7-bis( ethanamine (4) and 3,3′-(ethane-1,2-diyl)bis(1,3,5,7-tetraaza-bicyclo [3.3.1] nonane (7) have been prepared from reaction of ethane-1,2-diamine complexes with formaldehyde and ammonia or by reaction of the metal salt with the quaternary 'hexamminium' cation (8) and ammonia, respectively. Spectroscopic properties and kinetics of the acid hydrolyses of these complexes are reported. Observed pseudo-first-order rate constants are of the order of 10-1 s-1 at 25° in 1 mol dm-3 HCl/NaCl; acid dependencies are reported. In addition to (4), a further acid-stable and presumably macrocyclic compound could be produced from reaction of [cu(en)2]2+ with formaldehyde and ammonia, assigned tentatively as (9). Further reaction of the nickel(II) complex of (4) with formaldehyde and nitroethane yielded the macrocyclic complex of (10), which was characterized by a crystal structure analysis. Reduction with zinc amalgam yielded an amine-substituted macrocyclic complex from the nitro-substituted precursor. The title complex [Ni(10)](ClO4)2.H2O crystallized in the space group P21/n, a 14.367(2), b 13.099(2), c 12.325(3) , β 101.01(1). The nickel(II) was located in a square plane of two secondary (Ni-N 1.92 ) and two tertiary nitrogens (Ni-N 1.93 ); the 'football' formed as one cap from ammonia and formaldehyde condensation was clearly defined.
- Published
- 1989
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14. Goondolinones A and B: Terpenyl-quinolin-4(1 H )-ones from an Australian Volcanic Crater Soil-Derived Actinomadura sp., with Selective Activity against Dirofilaria immitis (Heartworm).
- Author
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Han J, Bruhn DF, Roberts DC, Burkman EJ, Moreno Y, Bernhardt PV, Salim AA, and Capon RJ
- Abstract
A chemical investigation of the Australian pasture soil-derived Actinomadura sp. S4S-00245B09, supported by chemical, bioactivity and cultivation profiling, yielded a new class of terpenyl-quinolin-4(1 H )-ones, goondolinones A and B ( 1 and 2 ), featuring an unprecedented fused seven-membered ether. Structures were assigned to 1 and 2 on the basis of detailed spectroscopic analysis, including X-ray analysis of 1 , and biosynthetic considerations. Goondolinone A ( 1 ) lacks antibacterial or antifungal properties, is noncytotoxic to two human carcinoma cell lines, but exhibits selective inhibition of the motility of heartworm Dirofilaria immitis microfilaria (EC
50 5.1 μM) and L4 larvae (EC50 21.4 μM). As a new anthelmintic scaffold, future understanding of the structure activity relationship and mechanism of action of 1 could inform the discovery of new treatments for heartworm and other filarial diseases, capable of safeguarding the health and welfare of companion animals.- Published
- 2024
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15. Hyperstable alkenes: are they remarkably unreactive?
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Summersgill MD, Gahan LR, Chow S, Pierens GK, Bernhardt PV, Krenske EH, and Williams CM
- Abstract
In 1981, Maier and Schleyer first identified a select number of cage bicyclic olefins (alkenes) as "hyperstable", and predicted them to be "remarkably unreactive", based solely on theoretical methods. Since that time only three ad hoc systems meeting the criteria of a hyperstable alkene have been reported in the literature. A one-pot, telescoped synthesis, of four hyperstable alkenes is reported herein, which has uncovered unexpected reactivity towards oxidation. Although, this work represents a new benchmark in hyperstable alkenes, it concomitantly emphasised the need to clarify the definition based on a long-held computational prediction., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)
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- 2024
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16. Targeting lysosomes by design: novel N -acridine thiosemicarbazones that enable direct detection of intracellular drug localization and overcome P-glycoprotein (Pgp)-mediated resistance.
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Kaya B, Smith H, Chen Y, Azad MG, M Russell T, Richardson V, Bernhardt PV, Dharmasivam M, and Richardson DR
- Abstract
Innovative N -acridine thiosemicarbazones (NATs) were designed along with their iron(iii), copper(ii), and zinc(ii) complexes. Lysosomal targeting was promoted by specifically incorporating the lysosomotropic Pgp substrate, acridine, into the thiosemicarbazone scaffold to maintain the tridentate N, N, S-donor system. The acridine moiety enables a significant advance in thiosemicarbazone design, since: (1) it enables tracking of the drugs by confocal microscopy using its inherent fluorescence; (2) it is lysosomotropic enabling lysosomal targeting; and (3) as acridine is a P-glycoprotein (Pgp) substrate, it facilitates lysosomal targeting, resulting in the drug overcoming Pgp-mediated resistance. These new N -acridine analogues are novel, and this is the first time that acridine has been specifically added to the thiosemicarbazone framework to achieve the three important properties above. These new agents displayed markedly greater anti-proliferative activity against resistant Pgp-expressing cells than very low Pgp-expressing cells. The anti-proliferative activity of NATs against multiple Pgp-positive cancer cell-types (colon, lung, and cervical carcinoma) was abrogated by the third generation Pgp inhibitor, Elacridar, and also Pgp siRNA that down-regulated Pgp. Confocal microscopy demonstrated that low Pgp in KB31 (-Pgp) cells resulted in acridine's proclivity for DNA intercalation promoting NAT nuclear-targeting. In contrast, high Pgp in KBV1 (+Pgp) cells led to NAT lysosomal sequestration, preventing its nuclear localisation. High Pgp expression in KBV1 (+Pgp) cells resulted in co-localization of NATs with the lysosomal marker, LysoTracker™, that was significantly ( p < 0.001) greater than the positive control, the di-2-pyridylketone-4-cyclohexyl-4-methyl-3-thiosemicarbazone (DpC) Zn(ii) complex, [Zn(DpC)
2 ]. Incorporation of acridine into the thiosemicarbazone scaffold led to Pgp-mediated transport into lysosomes to overcome Pgp-resistance., Competing Interests: The authors declare no competing conflict of interest., (This journal is © The Royal Society of Chemistry.)- Published
- 2024
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17. Isosteric Replacement of Sulfur to Selenium in a Thiosemicarbazone: Promotion of Zn(II) Complex Dissociation and Transmetalation to Augment Anticancer Efficacy.
- Author
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Kaya B, Gholam Azad M, Suleymanoglu M, Harmer JR, Wijesinghe TP, Richardson V, Zhao X, Bernhardt PV, Dharmasivam M, and Richardson DR
- Subjects
- Humans, Cell Line, Tumor, Cell Proliferation drug effects, Coordination Complexes pharmacology, Coordination Complexes chemistry, Coordination Complexes chemical synthesis, Structure-Activity Relationship, Drug Screening Assays, Antitumor, Thiosemicarbazones chemistry, Thiosemicarbazones pharmacology, Thiosemicarbazones chemical synthesis, Antineoplastic Agents pharmacology, Antineoplastic Agents chemistry, Antineoplastic Agents chemical synthesis, Zinc chemistry, Selenium chemistry, Selenium pharmacology, Sulfur chemistry
- Abstract
We implemented isosteric replacement of sulfur to selenium in a novel thiosemicarbazone (PPTP4c4mT) to create a selenosemicarbazone (PPTP4c4mSe) that demonstrates potentiated anticancer efficacy and selectivity. Their design specifically incorporated cyclohexyl and styryl moieties to sterically inhibit the approach of their Fe(III) complexes to the oxy-myoglobin heme plane. Importantly, in contrast to the Fe(III) complexes of the clinically trialed thiosemicarbazones Triapine, COTI-2, and DpC, the Fe(III) complexes of PPTP4c4mT and PPTP4c4mSe did not induce detrimental oxy-myoglobin oxidation. Furthermore, PPTP4c4mSe demonstrated more potent antiproliferative activity than the homologous thiosemicarbazone, PPTP4c4mT, with their selectivity being superior or similar, respectively, to the clinically trialed thiosemicarbazone, COTI-2. An advantageous property of the selenosemicarbazone Zn(II) complexes relative to their thiosemicarbazone analogues was their greater transmetalation to Cu(II) complexes in lysosomes. This latter effect probably promoted their antiproliferative activity. Both ligands down-regulated multiple key receptors that display inter-receptor cooperation that leads to aggressive and resistant breast cancer.
- Published
- 2024
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18. Kinetic, electrochemical and spectral characterization of bacterial and archaeal rusticyanins; unexpected stability issues and consequences for applications in biotechnology.
- Author
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Wilson LA, Melville JN, Pedroso MM, Krco S, Hoelzle R, Zaugg J, Southam G, Virdis B, Evans P, Supper J, Harmer JR, Tyson G, Clark A, Schenk G, and Bernhardt PV
- Subjects
- Kinetics, Electrochemistry, Actinobacteria chemistry, Thermoplasmales chemistry, Electron Spin Resonance Spectroscopy, Protein Structure, Tertiary, Iron metabolism, Oxidation-Reduction, Biotechnology, Protein Stability, Conserved Sequence genetics, Azurin chemistry, Azurin genetics, Azurin metabolism, Models, Molecular
- Abstract
Motivated by the ambition to establish an enzyme-driven bioleaching pathway for copper extraction, properties of the Type-1 copper protein rusticyanin from Acidithiobacillus ferrooxidans (AfR) were compared with those from an ancestral form of this enzyme (N0) and an archaeal enzyme identified in Ferroplasma acidiphilum (FaR). While both N0 and FaR show redox potentials similar to that of AfR their electron transport rates were significantly slower. The lack of a correlation between the redox potentials and electron transfer rates indicates that AfR and its associated electron transfer chain evolved to specifically facilitate the efficient conversion of the energy of iron oxidation to ATP formation. In F. acidiphilum this pathway is not as efficient unless it is up-regulated by an as of yet unknown mechanism. In addition, while the electrochemical properties of AfR were consistent with previous data, previously unreported behavior was found leading to a form that is associated with a partially unfolded form of the protein. The cyclic voltammetry (CV) response of AfR immobilized onto an electrode showed limited stability, which may be connected to the presence of the partially unfolded state of this protein. Insights gained in this study may thus inform the engineering of optimized rusticyanin variants for bioleaching processes as well as enzyme-catalyzed solubilization of copper-containing ores such as chalcopyrite., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023. Published by Elsevier Inc.)
- Published
- 2024
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19. Miniaturized Cultivation Profiling (MATRIX)-Facilitated Discovery of Noonazines A-C and Noonaphilone A from an Australian Marine-Derived Fungus, Aspergillus noonimiae CMB-M0339.
- Author
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Kankanamge S, Bernhardt PV, Khalil ZG, and Capon RJ
- Subjects
- Australia, Diketopiperazines chemistry, Diketopiperazines isolation & purification, Aquatic Organisms, Biosynthetic Pathways, Crystallography, X-Ray, Molecular Structure, Benzopyrans, Pigments, Biological, Aspergillus metabolism, Aspergillus chemistry
- Abstract
Subjecting the Australian marine-derived fungus Aspergillus noonimiae CMB-M0339 to cultivation profiling using an innovative miniaturized 24-well plate format (MATRIX) enabled access to new examples of the rare class of 2,6-diketopiperazines, noonazines A-C ( 1 - 3 ), along with the known analogue coelomycin ( 4 ), as well as a new azaphilone, noonaphilone A ( 5 ). Structures were assigned to 1 - 5 on the basis of a detailed spectroscopic analysis, and in the case of 1 - 2 , an X-ray crystallographic analysis. Plausible biosynthetic pathways are proposed for 1 - 4 , involving oxidative Schiff base coupling/dimerization of a putative Phe precursor. Of note, 2 incorporates a rare meta -Tyr motif, typically only reported in a limited array of Streptomyces metabolites. Similarly, a plausible biosynthetic pathway is proposed for 5 , highlighting a single point for stereo-divergence that allows for the biosynthesis of alternate antipodes, for example, the 7 R noonaphilone A ( 5 ) versus the 7 S deflectin 1a ( 6 ).
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- 2024
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20. Goondansamycins A-H: Benzenoid Ansamycins from an Australian Volcanic Crater Soil-Derived Actinomadura sp. S4S-00069B08.
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Han J, Bernhardt PV, and Capon RJ
- Subjects
- Australia, Molecular Structure, Benzoquinones chemistry, Benzoquinones pharmacology, Crystallography, X-Ray, Soil Microbiology, Actinomadura
- Abstract
A chemical investigation of Australian soil-derived bacteria Actinomadura sp. S4S-00069B08 yielded eight new benzenoid ansamycins, goondansamycins A-H. Goondansamycins feature rare 1,4-benzoxazin-3-one or o -diamino- p -benzoquinone moieties and can exist as both aglycones or 9- O -α-glycosides of either d-rhodinose or d-amicetose. Structures were solved on the basis of detailed spectroscopy, including X-ray analysis.
- Published
- 2024
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21. X-ray absorption and emission spectroscopy of N 2 S 2 Cu(II)/(III) complexes.
- Author
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Geoghegan BL, Bilyj JK, Bernhardt PV, DeBeer S, and Cutsail GE 3rd
- Abstract
This study investigates the influence of ligand charge on transition energies in a series of CuN
2 S2 complexes based on dithiocarbazate Schiff base ligands using Cu K-edge X-ray absorption spectroscopy (XAS) and Kβ valence-to-core (VtC) X-ray emission spectroscopy (XES). By comparing the formally Cu(II) complexes [CuII(HL1)] (HL12- = dimethyl pentane-2,4-diylidenebis[carbonodithiohydrazonate]) and [CuII(HL2)] (HL22- = dibenzyl pentane-2,4-diylidenebis[carbonodithiohydrazonate]) and the formally Cu(III) complex [CuIII(L2)], distinct changes in transition energies are observed, primarily attributed to the metal oxidation state. Density functional theory (DFT) calculations demonstrate how an increased negative charge on the deprotonated L23- ligand stabilizes the Cu(III) center through enhanced charge donation, modulating the core transition energies. Overall, significant shifts to higher energies are noted upon metal oxidation, emphasizing the importance of scrutinizing ligand structure in XAS/VtC XES analysis. The data further support the redox-innocent role of the Schiff base ligands and underscore the criticality of ligand protonation levels in future spectroscopic studies, particularly for catalytic intermediates. The combined XAS-VtC XES methodology validates the Cu(III) oxidation state assignment while offering insights into ligand protonation effects on core-level spectroscopic transitions.- Published
- 2024
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22. Synthesis of steroidal inhibitors for Mycobacterium tuberculosis.
- Author
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Churchman LR, Beckett JR, Tan L, Woods K, Doherty DZ, Ghith A, Bernhardt PV, Bell SG, West NP, and De Voss JJ
- Subjects
- Cytochrome P-450 Enzyme System metabolism, Cholesterol metabolism, Structure-Activity Relationship, Mycobacterium tuberculosis
- Abstract
Oxidised derivatives of cholesterol have been shown to inhibit the growth of Mycobacterium tuberculosis (Mtb). The bacteriostatic activity of these compounds has been attributed to their inhibition of CYP125A1 and CYP142A1, two metabolically critical cytochromes P450 that initiate degradation of the sterol side chain. Here, we synthesise and characterise an extensive library of 28 cholesterol derivatives to develop a structure-activity relationship for this class of inhibitors. The candidate compounds were evaluated for MIC with virulent Mtb and in binding studies with CYP125A1 and CYP142A1 from Mtb., (Copyright © 2024. Published by Elsevier Ltd.)
- Published
- 2024
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23. Correction to "Steric Blockade of Oxy-Myoglobin Oxidation by Thiosemicarbazones: Structure-Activity Relationships of the Novel PPP4pT Series''.
- Author
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Wijesinghe TP, Kaya B, Gonzálvez MA, Harmer JR, Gholam Azad M, Bernhardt PV, Dharmasivam M, and Richardson DR
- Published
- 2024
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24. The (±)-5-Aza[1.0]triblattane Skeleton via Azetine Cycloaddition.
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Su C, Dallaston MA, Watson RD, Fahrenhorst-Jones T, Cameron JP, Pierens GK, Bernhardt PV, Savage GP, and Williams CM
- Abstract
The first synthesis of the 5-aza[1.0]triblattane skeleton was achieved through a [4 + 2] cycloaddition approach using a suitably protected azetine and cyclopentadiene. A series of azetines were synthesized to explore both stability and suitable N-protection. The key step following cycloaddition utilized a noninitiated protonated aminyl radical cyclization to install the final 5-azatriblattane bond, but it was found to be considerably more unstable than the 6-aza isomer under acidic conditions.
- Published
- 2024
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25. Macrocyclic Copper(II) Complexes as Catalysts for Electrochemically Mediated Atom Transfer.
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Naher M, Su C, Harmer JR, Williams CM, and Bernhardt PV
- Abstract
Copper-catalyzed electrochemical atom transfer radical addition ( e ATRA) is a new method for the creation of new C-C bonds under mild conditions. In this work, we have explored the reactivity of an analogous series of N
4 macrocyclic CuII complexes as e ATRA precatalysts, which are primed by reduction to their monovalent oxidation state. These complexes were fully characterized structurally, spectroscopically, and electrochemically. A spectrum of radical activation reactivity was found across the series [CuI (Me4 cyclen)(NCMe)]+ (Me4 cyclen = 1,4,7,10-tetramethyl-1,4,7,10-tetraazacyclododecane), [CuI (Me4 cyclam)(NCMe)]+ (Me4 cyclam = 1,4,8,11-tetramethyl-1,4,8,11-tetraazacyclotetradecane), and [CuI (Me2 py2 clen)(NCMe)]+ (Me2 py2 clen = 3,7-dimethyl-3,7-diaza-1,5(2,6)-dipyridinacyclo-octaphane). The rate of radical production by [Cu(Me2 py2 clen)(NCMe)]+ was modest, but rapid radical capture to form the organocopper complex [CuI (Me2 py2 clen)(CH2 CN)] led to a dramatic acceleration in catalysis, greater than seen in any comparable Cu complex, but this led to rapid radical self-termination instead of radical addition.- Published
- 2024
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26. 9-Azahomocubane.
- Author
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Fahrenhorst-Jones T, Marshall DL, Burns JM, Pierens GK, Van Meurs DP, Kong D, Bernhardt PV, Blanksby SJ, Savage GP, Eaton PE, and Williams CM
- Abstract
Homocubane, a highly strained cage hydrocarbon, contains two very different positions for the introduction of a nitrogen atom into the skeleton, e. g., a position 1 exchange results in a tertiary amine whereas position 9 yields a secondary amine. Herein reported is the synthesis of 9-azahomocubane along with associated structural characterization, physical property analysis and chemical reactivity. Not only is 9-azahomocubane readily synthesized, and found to be stable as predicted, the basicity of the secondary amine was observed to be significantly lower than the structurally related azabicyclo[2.2.1]heptane, although similar to 1-azahomocubane., (© 2023 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH.)
- Published
- 2024
- Full Text
- View/download PDF
27. Differential transmetallation of complexes of the anti-cancer thiosemicarbazone, Dp4e4mT: effects on anti-proliferative efficacy, redox activity, oxy-myoglobin and oxy-hemoglobin oxidation.
- Author
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Dharmasivam M, Kaya B, Wijesinghe TP, Richardson V, Harmer JR, Gonzalvez MA, Lewis W, Azad MG, Bernhardt PV, and Richardson DR
- Abstract
The di-2-pyridylthiosemicarbazone (DpT) analogs demonstrate potent and selective anti-proliferative activity against human tumors. The current investigation reports the synthesis and chemical and biological characterization of the Fe(iii), Co(iii), Ni(ii), Cu(ii), Zn(ii), Ga(iii), and Pd(ii) complexes of the promising second generation DpT analog, di-2-pyridylketone-4-ethyl-4-methyl-3-thiosemicarbazone (Dp4e4mT). These studies demonstrate that the Dp4e4mT Co(iii), Ni(ii), and Pd(ii) complexes display distinct biological activity versus those with Cu(ii), Zn(ii), and Ga(iii) regarding anti-proliferative efficacy against cancer cells and a detrimental off-target effect involving oxidation of oxy-myoglobin (oxy-Mb) and oxy-hemoglobin (oxy-Hb). With regards to anti-proliferative activity, the Zn(ii) and Ga(iii) Dp4e4mT complexes demonstrate facile transmetallation with Cu(ii), resulting in efficacy against tumor cells that is strikingly similar to the Dp4e4mT Cu(ii) complex (IC
50 : 0.003-0.006 μM and 72 h). Relative to the Zn(ii) and Ga(iii) Dp4e4mT complexes, the Dp4e4mT Ni(ii) complex demonstrates kinetically slow transmetallation with Cu(ii) and intermediate anti-proliferative effects (IC50 : 0.018-0.076 μM after 72 h). In contrast, the Co(iii) and Pd(ii) complexes demonstrate poor anti-proliferative activity (IC50 : 0.262-1.570 μM after 72 h), probably due to a lack of transmetallation with Cu(ii). The poor efficacy of the Dp4e4mT Co(iii), Ni(ii), and Pd(ii) complexes to transmetallate with Fe(iii) markedly suppresses the oxidation of oxy-Mb and oxy-Hb. In contrast, the 2 : 1 Dp4e4mT: Cu(ii), Zn(ii), and Ga(iii) complexes demonstrate facile reactions with Fe(iii), leading to the redox active Dp4e4mT Fe(iii) complex and oxy-Mb and oxy-Hb oxidation. This study demonstrates the key role of differential transmetallation of Dp4e4mT complexes that has therapeutic ramifications for their use as anti-cancer agents., Competing Interests: No financial conflict of interest exists., (This journal is © The Royal Society of Chemistry.)- Published
- 2023
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28. Redox Characterization of the Complex Molybdenum Enzyme Formate Dehydrogenase from Cupriavidus necator .
- Author
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Harmer JR, Hakopian S, Niks D, Hille R, and Bernhardt PV
- Subjects
- Formate Dehydrogenases chemistry, Carbon Dioxide chemistry, Oxidation-Reduction, Formates, Molybdenum chemistry, Cupriavidus necator metabolism
- Abstract
The oxygen-tolerant and molybdenum-dependent formate dehydrogenase FdsDABG from Cupriavidus necator is capable of catalyzing both formate oxidation to CO
2 and the reverse reaction (CO2 reduction to formate) at neutral pH, which are both reactions of great importance to energy production and carbon capture. FdsDABG is replete with redox cofactors comprising seven Fe/S clusters, flavin mononucleotide, and a molybdenum ion coordinated by two pyranopterin dithiolene ligands. The redox potentials of these centers are described herein and assigned to specific cofactors using combinations of potential-dependent continuous wave and pulse EPR spectroscopy and UV/visible spectroelectrochemistry on both the FdsDABG holoenzyme and the FdsBG subcomplex. These data represent the first redox characterization of a complex metal dependent formate dehydrogenase and provide an understanding of the highly efficient catalytic formate oxidation and CO2 reduction activity that are associated with the enzyme.- Published
- 2023
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29. Steric Blockade of Oxy-Myoglobin Oxidation by Thiosemicarbazones: Structure-Activity Relationships of the Novel PPP4pT Series.
- Author
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Wijesinghe TP, Kaya B, Gonzálvez MA, Harmer JR, Gholam Azad M, Bernhardt PV, Dharmasivam M, and Richardson DR
- Subjects
- Copper, Drug Screening Assays, Antitumor, Ferric Compounds, Myoglobin, Oxidation-Reduction, Structure-Activity Relationship, Antineoplastic Agents pharmacology, Thiosemicarbazones chemistry, Thiosemicarbazones pharmacology
- Abstract
The di-2-pyridylketone thiosemicarbazones demonstrated marked anticancer efficacy, prompting progression of DpC to clinical trials. However, DpC induced deleterious oxy-myoglobin oxidation, stifling development. To address this, novel substituted phenyl thiosemicarbazone (PPP4pT) analogues and their Fe(III), Cu(II), and Zn(II) complexes were prepared. The PPP4pT analogues demonstrated potent antiproliferative activity (IC
50 : 0.009-0.066 μM), with the 1:1 Cu:L complexes showing the greatest efficacy. Substitutions leading to decreased redox potential of the PPP4pT:Cu(II) complexes were associated with higher antiproliferative activity, while increasing potential correlated with increased redox activity. Surprisingly, there was no correlation between redox activity and antiproliferative efficacy. The PPP4pT:Fe(III) complexes attenuated oxy-myoglobin oxidation significantly more than the clinically trialed thiosemicarbazones, Triapine, COTI-2, and DpC, or earlier thiosemicarbazone series. Incorporation of phenyl- and styryl-substituents led to steric blockade, preventing approach of the PPP4pT:Fe(III) complexes to the heme plane and its oxidation. The 1:1 Cu(II):PPP4pT complexes were inert to transmetalation and did not induce oxy-myoglobin oxidation.- Published
- 2023
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30. The Reversible Electrochemical Interconversion of Formate and CO 2 by Formate Dehydrogenase from Cupriavidus necator .
- Author
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Kalimuthu P, Hakopian S, Niks D, Hille R, and Bernhardt PV
- Subjects
- Carbon Dioxide chemistry, Oxidation-Reduction, Formates, Formate Dehydrogenases chemistry, Cupriavidus necator
- Abstract
The bacterial molybdenum (Mo)-containing formate dehydrogenase (FdsDABG) from Cupriavidus necator is a soluble NAD
+ -dependent enzyme belonging to the DMSO reductase family. The holoenzyme is complex and possesses nine redox-active cofactors including a bis(molybdopterin guanine dinucleotide) (bis-MGD) active site, seven iron-sulfur clusters, and 1 equiv of flavin mononucleotide (FMN). FdsDABG catalyzes the two-electron oxidation of HCOO- (formate) to CO2 and reversibly reduces CO2 to HCOO- under physiological conditions close to its thermodynamic redox potential. Here we develop an electrocatalytically active formate oxidation/CO2 reduction system by immobilizing FdsDABG on a glassy carbon electrode in the presence of coadsorbents such as chitosan and glutaraldehyde. The reversible enzymatic interconversion between HCOO- and CO2 by FdsDABG has been realized with cyclic voltammetry using a range of artificial electron transfer mediators, with methylene blue (MB) and phenazine methosulfate (PMS) being particularly effective as electron acceptors for FdsDABG in formate oxidation. Methyl viologen (MV) acts as both an electron acceptor (MV2+ ) in formate oxidation and an electron donor (MV+• ) for CO2 reduction. The catalytic voltammetry was reproduced by electrochemical simulation across a range of sweep rates and concentrations of formate and mediators to provide new insights into the kinetics of the FdsDABG catalytic mechanism.- Published
- 2023
- Full Text
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31. Electrocatalytic Atom Transfer Radical Addition with Turbocharged Organocopper(II) Complexes.
- Author
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Naher M, Su C, Harmer JR, Williams CM, and Bernhardt PV
- Abstract
The utility and scope of Cu-catalyzed halogen atom transfer chemistry have been exploited in the fields of atom transfer radical polymerization and atom transfer radical addition, where the metal plays a key role in radical formation and minimizing unwanted side reactions. We have shown that electrochemistry can be employed to modulate the reactivity of the Cu catalyst between its active (Cu
I ) and dormant (CuII ) states in a variety of ligand systems. In this work, a macrocyclic pyridinophane ligand (L1) was utilized, which can break the C-Br bond of BrCH2 CN to release• CH2 CN radicals when in complex with CuI . Moreover, the [CuI (L1)]+ complex can capture the• CH2 CN radical to form a new species [CuII (L1)(CH2 CN)]+ in situ that, on reduction, exhibits halogen atom transfer reactivity 3 orders of magnitude greater than its parent complex [CuI (L1)]+ . This unprecedented rate acceleration has been identified by electrochemistry, successfully reproduced by simulation, and exploited in a Cu-catalyzed bulk electrosynthesis where [CuII (L1)(CH2 CN)]+ participates as a radical donor in the atom transfer radical addition of BrCH2 CN to a selection of styrenes. The formation of these turbocharged catalysts in situ during electrosynthesis offers a new approach to the Cu-catalyzed organic reaction methodology.- Published
- 2023
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32. seco -1-Azacubane-2-carboxylic acid-Amide Bond Comparison to Proline.
- Author
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Fahrenhorst-Jones T, Kong D, Burns JM, Pierens GK, Bernhardt PV, Savage GP, and Williams CM
- Abstract
seco -1-Azacubane-2-carboxylic acid, an unusual and sterically constrained amino acid, was found to undergo amide bond formation at both the N- and C-termini using proline based bioactive molecule templates as a concept platform.
- Published
- 2023
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33. Electrocatalytic Aldehyde Oxidation by a Tungsten Dependent Aldehyde Oxidoreductase from Aromatoleum Aromaticum.
- Author
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Kalimuthu P, Hege D, Winiarska A, Gemmecker Y, Szaleniec M, Heider J, and Bernhardt PV
- Subjects
- Tungsten, Methylene Blue, Kinetics, Oxidation-Reduction, Aldehyde Dehydrogenase, Aldehyde Oxidoreductases chemistry, Aldehyde Oxidoreductases metabolism, Aldehydes
- Abstract
In contrast to their molybdenum dependent relatives, tungsten enzymes operate at significantly lower redox potentials, and in some cases they can carry out reversible redox transformations of their substrates and products. Still, the electrochemical properties of W enzymes have received much less attention than their Mo relatives. Herein we analyse the tungsten enzyme aldehyde oxidoreductase (AOR) from the mesophilic bacterium Aromatoleum aromaticum which has been immobilised on a glassy carbon working electrode. This generates a functional system that electrochemically oxidises a wide variety of aromatic and aliphatic aldehydes in the presence of the electron transfer mediators benzyl viologen, methylene blue or dichlorophenol indophenol. Simulation of the cyclic voltammetry has enabled a thorough kinetic analysis of the system, which reveals that methylene blue acts as a two-electron acceptor. In contrast, the other two mediators act as single electron oxidants. The different electrochemical driving forces imparted by these mediators also lead to significantly different outer sphere electron transfer rates with AOR. This work shows that electrocatalytic aldehyde oxidation can be achieved at a low applied electrochemical potential leading to an extremely energy efficient catalytic process., (© 2023 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH.)
- Published
- 2023
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34. Kinetico-Mechanistic Studies on a Reactive Organocopper(II) Complex: Cu-C Bond Homolysis versus Heterolysis.
- Author
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Gonzálvez MA, Williams CM, Martínez M, and Bernhardt PV
- Abstract
Organocopper(II) reagents are an unexplored frontier of copper catalysis. Despite being proposed as reactive intermediates, an understanding of the stability and reactivity of the Cu
II -C bond has remained elusive. Two main pathways can be considered for the cleavage mode of a CuII -C bond: homolysis and heterolysis. We recently showed how organocopper(II) reagents can react with alkenes via radical addition, a homolytic pathway. In this work, the decomposition of the complex [CuII LR]+ [L = tris(2- dimethylaminoethyl)amine, Me6 tren, R = NCCH2 - ] in the absence and presence of an initiator (RX, X = Cl, Br) was evaluated. When no initiator was present, first-order CuII -C bond homolysis occurred producing [CuI L]+ and succinonitrile, via radical termination. When an excess of the initiator was present, a subsequent formation of [CuII LX]+ via a second-order reaction was found, which results from the reaction of [CuI L]+ with RX following homolysis. However, when Brønsted acids (R'-OH: R' = H, Me, Ph, PhCO) were present, heterolytic cleavage of the CuII -C bond produced [CuII L(OR')]+ and MeCN. Kinetic studies were undertaken to obtain the thermal (Δ H⧧ , Δ S⧧ ) and pressure (Δ V⧧ ) activation parameters and deuterium kinetic isotopic effects, which provided an understanding of the strength of the CuII -C bond and the nature of the transition state for the reactions involved. These results reveal possible reaction pathways for organocopper(II) complexes relevant to their applications as catalysts in C-C bond forming reactions.- Published
- 2023
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35. 1-Azahomocubane.
- Author
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Fahrenhorst-Jones T, Marshall DL, Burns JM, Pierens GK, Hormann RE, Fisher AM, Bernhardt PV, Blanksby SJ, Savage GP, Eaton PE, and Williams CM
- Abstract
Highly strained cage hydrocarbons have long stood as fundamental molecules to explore the limits of chemical stability and reactivity, probe physical properties, and more recently as bioactive molecules and in materials discovery. Interestingly, the nitrogenous congeners have attracted much less attention. Previously absent from the literature, azahomocubanes, offer an opportunity to investigate the effects of a nitrogen atom when incorporated into a highly constrained polycyclic environment. Herein disclosed is the synthesis of 1-azahomocubane, accompanied by comprehensive structural characterization, physical property analysis and chemical reactivity. These data support the conclusion that nitrogen is remarkably well tolerated in a highly strained environment., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)
- Published
- 2023
- Full Text
- View/download PDF
36. Synthesis of Uronic Acid 1-Azasugars as Putative Inhibitors of α-Iduronidase, β-Glucuronidase and Heparanase.
- Author
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Doherty GG, Ler GJM, Wimmer N, Bernhardt PV, Ashmus RA, Vocadlo DJ, Armstrong Z, Davies GJ, Maccarana M, Li JP, Kayal Y, and Ferro V
- Subjects
- Humans, Uronic Acids, Glucuronidase chemistry, Iduronidase chemistry, Iduronidase genetics, Mucopolysaccharidosis I genetics
- Abstract
1-Azasugar analogues of l-iduronic acid (l-IdoA) and d-glucuronic acid (d-GlcA) and their corresponding enantiomers have been synthesized as potential pharmacological chaperones for mucopolysaccharidosis I (MPS I), a lysosomal storage disease caused by mutations in the gene encoding α-iduronidase (IDUA). The compounds were efficiently synthesized in nine or ten steps from d- or l-arabinose, and the structures were confirmed by X-ray crystallographic analysis of key intermediates. All compounds were inactive against IDUA, although l-IdoA-configured 8 moderately inhibited β-glucuronidase (β-GLU). The d-GlcA-configured 9 was a potent inhibitor of β-GLU and a moderate inhibitor of the endo-β-glucuronidase heparanase. Co-crystallization of 9 with heparanase revealed that the endocyclic nitrogen of 9 forms close interactions with both the catalytic acid and catalytic nucleophile., (© 2022 The Authors. ChemBioChem published by Wiley-VCH GmbH.)
- Published
- 2023
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37. Structural and Functional Insight into the Mechanism of the Fe-S Cluster-Dependent Dehydratase from Paralcaligenes ureilyticus.
- Author
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Bayaraa T, Lonhienne T, Sutiono S, Melse O, Brück TB, Marcellin E, Bernhardt PV, Boden M, Harmer JR, Sieber V, Guddat LW, and Schenk G
- Subjects
- Amino Acid Sequence, Binding Sites, Catalysis, Hydro-Lyases chemistry
- Abstract
Enzyme-catalyzed reaction cascades play an increasingly important role for the sustainable manufacture of diverse chemicals from renewable feedstocks. For instance, dehydratases from the ilvD/EDD superfamily have been embedded into a cascade to convert glucose via pyruvate to isobutanol, a platform chemical for the production of aviation fuels and other valuable materials. These dehydratases depend on the presence of both a Fe-S cluster and a divalent metal ion for their function. However, they also represent the rate-limiting step in the cascade. Here, catalytic parameters and the crystal structure of the dehydratase from Paralcaligenes ureilyticus (PuDHT, both in presence of Mg
2+ and Mn2+ ) were investigated. Rate measurements demonstrate that the presence of stoichiometric concentrations Mn2+ promotes higher activity than Mg2+ , but at high concentrations the former inhibits the activity of PuDHT. Molecular dynamics simulations identify the position of a second binding site for the divalent metal ion. Only binding of Mn2+ (not Mg2+ ) to this site affects the ligand environment of the catalytically essential divalent metal binding site, thus providing insight into an inhibitory mechanism of Mn2+ at higher concentrations. Furthermore, in silico docking identified residues that play a role in determining substrate binding and selectivity. The combined data inform engineering approaches to design an optimal dehydratase for the cascade., (© 2022 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH.)- Published
- 2023
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38. Ab Initio Investigation of the Na 3 [Ln(ODA) 3 ]·2NaClO 4 ·6H 2 O (Ln = Ce-Yb; ODA = Oxydiacetate) Series.
- Author
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Connolly BJP, Lian JYJ, Bernhardt PV, and Riley MJ
- Abstract
In this work, the Na
3 [Ln(ODA)3 ]·2NaClO4 ·6H2 O (Ln = Ce-Yb; ODA = oxydiacetate) series was analyzed with the ab initio ligand field theory (AILFT) module of the ORCA computational suite. The results were discussed within the framework of the angular overlap model (AOM) and compared to literature data. We find that the structural changes observed across the series exemplifies the effects of the lanthanide contraction also manifesting in the value of the AOM parameters. It is also shown that the complete active space self-consistent field (CASSCF) methodology is sufficient to describe the ligand field interactions in mononuclear lanthanide complexes, and the effects of dynamic correlation, through n -electron valence state perturbation theory (NEVPT2), are discussed. The calculated ligand field parameters of the present work are compared to the experimentally derived values from the literature.- Published
- 2023
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39. Designing Tailored Thiosemicarbazones with Bespoke Properties: The Styrene Moiety Imparts Potent Activity, Inhibits Heme Center Oxidation, and Results in a Novel "Stealth Zinc(II) Complex".
- Author
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Dharmasivam M, Kaya B, Wijesinghe T, Gholam Azad M, Gonzálvez MA, Hussaini M, Chekmarev J, Bernhardt PV, and Richardson DR
- Subjects
- Cell Line, Tumor, Zinc chemistry, Myoglobin, Hemoglobins, Styrenes, Heme, Copper metabolism, Antineoplastic Agents chemistry, Thiosemicarbazones chemistry
- Abstract
A novel, potent, and selective antitumor agent, namely ( E )-3-phenyl-1-(2-pyridinyl)-2-propen-1-one 4,4-dimethyl-3-thiosemicarbazone (PPP44mT), and its analogues were synthesized and characterized and displayed strikingly distinctive properties. This activity was mediated by the inclusion of a styrene moiety, which through steric and electrochemical mechanisms prevented deleterious oxy-myoglobin or oxy-hemoglobin oxidation relative to other potent thiosemicarbazones, i.e., di-2-pyridylketone-4-cyclohexyl-4-methyl-3-thiosemicarbazone (DpC) or di-2-pyridylketone-4,4-dimethyl-3-thiosemicarbazone (Dp44mT). Structure-activity relationship analysis demonstrated specific tuning of PPP44mT electrochemistry further inhibited oxy-myoglobin or oxy-hemoglobin oxidation. Both PPP44mT and its Cu(II) complexes showed conspicuous almost immediate cytotoxicity against SK-N-MC tumor cells (within 3 h). In contrast, [Zn(PPP44mT)
2 ] demonstrated a pronounced delay in activity, taking 48 h before marked antiproliferative efficacy was apparent. As such, [Zn(PPP44mT)2 ] was designated as a "stealth Zn(II) complex" that overcomes the near immediate cytotoxicity of PPP44mT or its copper complexes. Upon examination of the suppression of oncogenic signaling, [Zn(PPP44mT)2 ] was superior at inhibiting cyclin D1 expression compared to DpC or Dp44mT.- Published
- 2023
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40. Unearthing the Subtleties of Rhodium(II)-Catalyzed Carbenoid Cycloadditions to Furans with an N -Sulfonyl-1,2,3-triazole Probe.
- Author
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Bettencourt CJ, Krainz T, Chow S, Parr BT, Tracy WF, Bernhardt PV, Davies HML, and Williams CM
- Subjects
- Triazoles, Cycloaddition Reaction, Catalysis, Furans chemistry, Rhodium chemistry
- Abstract
The rhodium(II)-catalyzed reaction of a model alkenyl donor/acceptor N -sulfonyltriazole with a wide selection of furans is reported. This investigation unearthed a range of structurally diverse carbocyclic and ring-opened products, in good to excellent yields. The products obtained are proposed to arise selectively via cyclopropanation or zwitterionic rearrangement pathways, which are highly dependent on both the structural and electronic features of the furan substrate.
- Published
- 2022
- Full Text
- View/download PDF
41. Molecular Networking and Cultivation Profiling Reveals Diverse Natural Product Classes from an Australian Soil-Derived Fungus Aspergillus sp. CMB-MRF324.
- Author
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Wu T, Salim AA, Bernhardt PV, and Capon RJ
- Subjects
- Animals, Sheep, Australia, Aspergillus chemistry, Molecular Structure, Biological Products pharmacology
- Abstract
This study showcases the application of an integrated workflow of molecular networking chemical profiling (GNPS), together with miniaturized microbioreactor cultivation profiling (MATRIX) to successfully detect, dereplicate, prioritize, optimize the production, isolate, characterize, and identify a diverse selection of new chemically labile natural products from the Queensland sheep pasture soil-derived fungus Aspergillus sp. CMB-MRF324. More specifically, we report the new tryptamine enamino tripeptide aspergillamides E-F ( 7 - 8 ), dihydroquinoline-2-one aflaquinolones H-I ( 11 - 12 ), and prenylated phenylbutyrolactone aspulvinone Y ( 14 ), along with an array of known co-metabolites, including asterriquinones SU5228 ( 9 ) and CT5 ( 10 ), terrecyclic acid A ( 13 ), and aspulvinones N-CR ( 15 ), B ( 16 ), D ( 17 ), and H ( 18 ). Structure elucidation was achieved by a combination of detailed spectroscopic and chemical analysis, biosynthetic considerations, and in the case of 11, an X-ray crystallographic analysis., Competing Interests: The authors declare that they have no conflict of interest.
- Published
- 2022
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42. Noonindoles A-F: Rare Indole Diterpene Amino Acid Conjugates from a Marine-Derived Fungus, Aspergillus noonimiae CMB-M0339.
- Author
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Kankanamge S, Khalil ZG, Bernhardt PV, and Capon RJ
- Subjects
- Australia, Candida albicans, Indoles pharmacology, Molecular Structure, Microbial Sensitivity Tests, Amino Acids, Diterpenes pharmacology
- Abstract
Analytical scale chemical/cultivation profiling prioritized the Australian marine-derived fungus Aspergillus noonimiae CMB-M0339. Subsequent investigation permitted isolation of noonindoles A-F ( 5 - 10 ) and detection of eight minor analogues ( i - viii ) as new examples of a rare class of indole diterpene (IDT) amino acid conjugate, indicative of an acyl amino acid transferase capable of incorporating a diverse range of amino acid residues. Structures for 5 - 10 were assigned by detailed spectroscopic and X-ray crystallographic analysis. The metabolites 5-14 exhibited no antibacterial properties against G-ve and G+ve bacteria or the fungus Candida albicans , with the exception of 5 which exhibited moderate antifungal activity., Competing Interests: The authors declare no conflict of interest.
- Published
- 2022
- Full Text
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43. Nitroimidazopyrazinones with Oral Activity against Tuberculosis and Chagas Disease in Mouse Models of Infection.
- Author
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Ang CW, Lee BM, Jackson CJ, Wang Y, Franzblau SG, Francisco AF, Kelly JM, Bernhardt PV, Tan L, West NP, Sykes ML, Hinton AO, Bolisetti R, Avery VM, Cooper MA, and Blaskovich MAT
- Subjects
- Animals, Disease Models, Animal, Mice, Nitroreductases, Chagas Disease drug therapy, Mycobacterium tuberculosis, Nitroimidazoles pharmacology, Nitroimidazoles therapeutic use, Trypanosoma cruzi, Tuberculosis drug therapy
- Abstract
Tuberculosis and parasitic infections continue to impose a significant threat to global public health and economic growth. There is an urgent need to develop new treatments to combat these diseases. Here, we report the in vitro and in vivo profiles of a new bicyclic nitroimidazole subclass, namely, nitroimidazopyrazinones, against mycobacteria and Trypanosoma cruzi . Derivatives with monocyclic side chains were selective against Mycobacterium tuberculosis and were able to reduce the bacterial load when dosed orally in mice. We demonstrated that deazaflavin-dependent nitroreductase (Ddn) could act effectively on nitroimidazopyrazinones, indicating the potential of Ddn as an activating enzyme for these new compounds in M. tuberculosis . Oral administration of compounds with extended biaryl side chains ( 73 and 74 ) was effective in suppressing infection in an acute T. cruzi -infected murine model. These findings demonstrate that active nitroimidazopyrazinones have potential to be developed as orally available clinical candidates against both tuberculosis and Chagas disease.
- Published
- 2022
- Full Text
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44. Catalytic electrochemistry of the bacterial Molybdoenzyme YcbX.
- Author
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Kalimuthu P, Harmer JR, Baldauf M, Hassan AH, Kruse T, and Bernhardt PV
- Subjects
- Animals, Catalysis, Electrochemistry, Escherichia coli metabolism, Oxidoreductases metabolism, Paraquat chemistry
- Abstract
Molybdenum-dependent enzymes that can reduce N-hydroxylated substrates (e.g. N-hydroxyl-purines, amidoximes) are found in bacteria, plants and vertebrates. They are involved in the conversion of a wide range of N-hydroxylated organic compounds into their corresponding amines, and utilize various redox proteins (cytochrome b
5 , cyt b5 reductase, flavin reductase) to deliver reducing equivalents to the catalytic centre. Here we present catalytic electrochemistry of the bacterial enzyme YcbX from Escherichia coli utilizing the synthetic electron transfer mediator methyl viologen (MV2+ ). The electrochemically reduced form (MV+. ) acts as an effective electron donor for YcbX. To immobilize YcbX on a glassy carbon electrode, a facile protein crosslinking approach was used with the crosslinker glutaraldehyde (GTA). The YcbX-modified electrode showed a catalytic response for the reduction of a broad range of N-hydroxylated substrates. The catalytic activity of YcbX was examined at different pH values exhibiting an optimum at pH 7.5 and a bell-shaped pH profile with deactivation through deprotonation (pKa1 9.1) or protonation (pKa2 6.1). Electrochemical simulation was employed to obtain new biochemical data for YcbX, in its reaction with methyl viologen and the organic substrates 6-N-hydroxylaminopurine (6-HAP) and benzamidoxime (BA)., (Copyright © 2022 Elsevier B.V. All rights reserved.)- Published
- 2022
- Full Text
- View/download PDF
45. Organocopper(ii) complexes: new catalysts for carbon-carbon bond formation via electrochemical atom transfer radical addition ( e ATRA).
- Author
-
Gonzálvez MA, Su C, Williams CM, and Bernhardt PV
- Abstract
Organocopper(ii) complexes are a rarity while organocopper(i) complexes are commonplace in chemical synthesis. In the course of building a strategy to generate organocopper(ii) species utilizing electrochemistry, a method to form compounds with Cu
II -C bonds was discovered, that demonstrated remarkably potent reactivity towards different functionalized alkenes under catalytic control. The role of the organocopper(ii) complex is to act as a source of masked radicals (in this case ˙CH2 CN) that react with an alkene to generate the corresponding γ-halonitrile in good yields through atom transfer radical addition (ATRA) to various alkenes. The organocopper(ii) complexes can be continuously regenerated electrochemically for ATRA ( e ATRA), which proceeds at room temperature, under low Cu loadings (1-10 mol%) and with the possibility of Cu-catalyst recovery., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)- Published
- 2022
- Full Text
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46. Dihydroxy-Acid Dehydratases From Pathogenic Bacteria: Emerging Drug Targets to Combat Antibiotic Resistance.
- Author
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Bayaraa T, Gaete J, Sutiono S, Kurz J, Lonhienne T, Harmer JR, Bernhardt PV, Sieber V, Guddat L, and Schenk G
- Subjects
- Bacterial Proteins chemistry, Campylobacter jejuni drug effects, Campylobacter jejuni enzymology, Catalysis, Iron-Sulfur Proteins chemistry, Staphylococcus aureus drug effects, Staphylococcus aureus enzymology, Drug Resistance, Bacterial, Hydro-Lyases chemistry
- Abstract
There is an urgent global need for the development of novel therapeutics to combat the rise of various antibiotic-resistant superbugs. Enzymes of the branched-chain amino acid (BCAA) biosynthesis pathway are an attractive target for novel anti-microbial drug development. Dihydroxy-acid dehydratase (DHAD) is the third enzyme in the BCAA biosynthesis pathway. It relies on an Fe-S cluster for catalytic activity and has recently also gained attention as a catalyst in cell-free enzyme cascades. Two types of Fe-S clusters have been identified in DHADs, i.e. [2Fe-2S] and [4Fe-4S], with the latter being more prone to degradation in the presence of oxygen. Here, we characterise two DHADs from bacterial human pathogens, Staphylococcus aureus and Campylobacter jejuni (SaDHAD and CjDHAD). Purified SaDHAD and CjDHAD are virtually inactive, but activity could be reversibly reconstituted in vitro (up to ∼19,000-fold increase with k
cat as high as ∼6.7 s-1 ). Inductively-coupled plasma-optical emission spectroscopy (ICP-OES) measurements are consistent with the presence of [4Fe-4S] clusters in both enzymes. N-isopropyloxalyl hydroxamate (IpOHA) and aspterric acid are both potent inhibitors for both SaDHAD (Ki =7.8 and 51.6 μM, respectively) and CjDHAD (Ki =32.9 and 35.1 μM, respectively). These compounds thus present suitable starting points for the development of novel anti-microbial chemotherapeutics., (© 2022 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH.)- Published
- 2022
- Full Text
- View/download PDF
47. Minimizing the Reorganization Energy of Cobalt Redox Mediators Maximizes Charge Transfer Rates from Quantum Dots.
- Author
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Fort MJ, Click SM, Robinson EH, He FMC, Bernhardt PV, Rosenthal SJ, and Macdonald JE
- Abstract
Light-induced charge separation is at the very heart of many solar harvesting technologies. The reduction of energetic barriers to charge separation and transfer increases the rate of separation and the overall efficiency of these technologies. Here we report that the internal reorganization energy of the redox acceptor, the movement of the atoms with changing charge, has a profound effect on the charge transfer rates from donor quantum dots. We experimentally studied and modelled with Marcus Theory charge transfer to cobalt complexes that have similar redox potentials covering 350 mV, but vastly different reorganization energies spanning 2 eV. While the driving force does influence the electron transfer rates, the reorganization energies had a far more profound effect, increasing charge transfer rates by several orders of magnitude. Our studies suggest that careful design of redox mediators to minimize reorganization energy is an untapped route to drastically increase the efficiency of quantum dot applications that feature charge transfer., (© 2022 Wiley-VCH GmbH.)
- Published
- 2022
- Full Text
- View/download PDF
48. Enzyme Electrode Biosensors for N -Hydroxylated Prodrugs Incorporating the Mitochondrial Amidoxime Reducing Component.
- Author
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Zapiter J, Harmer JR, Struwe M, Scheidig A, Clement B, and Bernhardt PV
- Subjects
- Electrodes, Electron Transport, Humans, Oxidation-Reduction, Oximes, Biosensing Techniques, Prodrugs
- Abstract
Human mitochondrial amidoxime reducing component 1 and 2 (mARC1 and mARC2) were immobilised on glassy carbon electrodes using the crosslinker glutaraldehyde. Voltammetry was performed in the presence of the artificial electron transfer mediator methyl viologen, whose redox potential lies negative of the enzymes' Mo
VI/V and MoV/IV redox potentials which were determined from optical spectroelectrochemical and EPR measurements. Apparent Michaelis constants obtained from catalytic limiting currents at various substrate concentrations were comparable to those previously reported in the literature from enzymatic assays. Kinetic parameters for benzamidoxime reduction were determined from cyclic voltammograms simulated using Digisim. pH dependence and stability of the enzyme electrode with time were also determined from limiting catalytic currents in saturating concentrations of benzamidoxime. The same electrode remained active after at least 9 days. Fabrication of this versatile and cost-effective biosensor is effective in screening new pharmaceutically important substrates and mARC inhibitors.- Published
- 2022
- Full Text
- View/download PDF
49. Glenthmycins A-M: Macrocyclic Spirotetronate Polyketide Antibacterials from the Australian Pasture Plant-Derived Streptomyces sp. CMB-PB041.
- Author
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Wu T, Salim AA, Khalil ZG, Bernhardt PV, and Capon RJ
- Subjects
- Amino Sugars, Anti-Bacterial Agents chemistry, Australia, Humans, Microbial Sensitivity Tests, Molecular Structure, Anthrax, Methicillin-Resistant Staphylococcus aureus, Polyketides metabolism, Polyketides pharmacology, Streptomyces chemistry
- Abstract
Chemical investigation of Australian pasture plant-derived Streptomyces sp. CMB-PB041, supported by miniaturized cultivation profiling and molecular network analysis, led to the isolation and characterization of 13 new macrocyclic spirotetronates, glenthmycins A-M ( 1 - 13 ), with structures assigned by detailed spectroscopic analysis, chemical degradation and derivatization, and mechanistic and biosynthetic considerations. Hydrolysis of glenthmycin B ( 2 ) yielded the aglycone 14 , whose structure and absolute configuration were secured by X-ray analysis, along with the unexpected amino sugar residues glenthose lactams A ( 15 ) and B ( 16 ), with Mosher analysis of 15 facilitating assignment of absolute configurations of the amino sugar. While the glenthmycins proved to be acid stable, treatment of isomeric glenthmycins (i.e., 3 , 6 , and 8 ) with base catalyzed rapid intramolecular trans -esterification to regio-isomeric mixtures (i.e., 3 + 6 + 8 ). Exposure of 5 to base achieved the same intramolecular trans -esterification and was instrumental in detecting and tentatively identifying two additional minor co-metabolites, glenthmycins N ( 19 ) and O ( 20 ). A structure-activity relationship analysis carried out on 1 - 13 and the semisynthetic analogues 14 and 21 - 26 revealed a promising Gram +ve antibacterial pharmacophore, effective against methicillin-resistant Staphylococcus aureus (MRSA) and vancomycin-resistant Enterococci (VRE), but with no detectable cytotoxicity to eukaryotic cells (i.e., fungal and human carcinoma). Of particular note, the semisynthetic analogue glenthmycin K 9-valerate ( 26 ) was unique among glenthmycins in potently inhibiting growth of the full panel of Gram +ve pathogens (IC
50 0.2-1.6 μM). We conclude with an observation that any future evaluation of the antibacterial potential of glenthmycins and related macrocyclic spirotetronates may do well to include important soil-derived Gram +ve pathogens, such as Bacillus anthrax , Clostridium botulinum , and Rhodococcus equi , the causative agents of anthrax, botulism, and livestock pneumonia.- Published
- 2022
- Full Text
- View/download PDF
50. Borylated 2,3,4,5-Tetrachlorophthalimide and Their 2,3,4,5-Tetrachlorobenzamide Analogues: Synthesis, Their Glycosidase Inhibition and Anticancer Properties in View to Boron Neutron Capture Therapy.
- Author
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Campkin DM, Shimadate Y, Bartholomew B, Bernhardt PV, Nash RJ, Sakoff JA, Kato A, and Simone MI
- Subjects
- Animals, Boron chemistry, Boron pharmacology, Boron Compounds pharmacology, Cattle, Glycoside Hydrolases, Rats, Boron Neutron Capture Therapy, Neoplasms
- Abstract
Tetrachlorinated phthalimide analogues bearing a boron-pinacolate ester group were synthesised via two synthetic routes and evaluated in their glycosidase modulating and anticancer properties, with a view to use them in boron neutron capture therapy (BNCT), a promising radiation type for cancer, as this therapy does little damage to biological tissue. An unexpected decarbonylation/decarboxylation to five 2,3,4,5-tetrachlorobenzamides was observed and confirmed by X-ray crystallography studies, thus, giving access to a family of borylated 2,3,4,5-tetrachlorobenzamides. Biological evaluation showed the benzamide drugs to possess good to weak potencies (74.7-870 μM) in the inhibition of glycosidases, and to have good to moderate selectivity in the inhibition of a panel of 18 glycosidases. Furthermore, in the inhibition of selected glycosidases, there is a core subset of three animal glycosidases, which is always inhibited (rat intestinal maltase α-glucosidase, bovine liver β-glucosidase and β-galactosidase). This could indicate the involvement of the boron atom in the binding. These glycosidases are targeted for the management of diabetes, viral infections (via a broad-spectrum approach) and lysosomal storage disorders. Assays against cancer cell lines revealed potency in growth inhibition for three molecules, and selectivity for one of these molecules, with the growth of the normal cell line MCF10A not being affected by this compound. One of these molecules showed both potency and selectivity; thus, it is a candidate for further study in this area. This paper provides numerous novel aspects, including expedited access to borylated 2,3,4,5-tetrachlorophthalimides and to 2,3,4,5-tetrachlorobenzamides. The latter constitutes a novel family of glycosidase modulating drugs. Furthermore, a greener synthetic access to such structures is described.
- Published
- 2022
- Full Text
- View/download PDF
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