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1. Characterization of hepatitis C virus resistance to grazoprevir reveals complex patterns of mutations following on-treatment breakthrough that are not observed at relapse

3. SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2

4. SARS-CoV-2 evolution during treatment of chronic infection

5. A highly virulent variant of HIV-1 circulating in the Netherlands.

6. Genomic reconstruction of the SARS-CoV-2 epidemic in England

7. Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England

8. Virological and serological characterization of critically ill patients with COVID-19 in the UK: Interactions of viral load, antibody status and B.1.1.7 variant infection

10. Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies

11. Distinct patterns of within-host virus populations between two subgroups of human respiratory syncytial virus

12. Simultaneous Viral Whole-Genome Sequencing and Differential Expression Profiling in Respiratory Syncytial Virus Infection of Infants

13. Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity

15. Interferon lambda 4 impacts the genetic diversity of hepatitis C virus

16. Quantifying the contribution of different aged men and women to onwards transmission of HIV-1 in generalised epidemics in sub-Saharan Africa: A modelling and phylogenetics approach from the HPTN 071 (PopART) trial

17. PANGEA-HIV 2: Phylogenetics and networks for generalised epidemics in Africa

19. Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis

20. Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis

21. Deep sequencing of hepatitis B virus (HBV) genomes using rolling circle amplification and Nanopore

22. Genomic epidemiology reconstructs the introduction and spread of Zika virus in Central America and Mexico

23. Detection and Characterization of Homologues of Human Hepatitis Viruses and Pegiviruses in Rodents and Bats in Vietnam

25. Comparison of next-generation sequencing technologies for comprehensive assessment of full-length hepatitis C viral genomes

26. Characterisation of hepatitis C virus recombination in Cameroon using non-specific next generation sequencing

27. Comparison of next generation sequencing technologies for the comprehensive assessment of full-length hepatitis C viral genomes

28. Comparison of next generation sequencing technologies for the comprehensive assessment of full-length hepatitis C viral genomes

29. First Complete Genome Sequences of Zika Virus Isolated from Febrile Patient Sera in Ecuador

30. First Complete Genome Sequences of Zika Virus Isolated from Febrile Patient Sera in Ecuador

33. Genome-To-Genome Virus-Host Analysis Reveals HCV Genotype 3 Viral Polymorphisms Linked Viral Load and to Host HLA Class-I/II and IL28B Alleles

34. Comparison of next Generation Sequencing Technologies for the Comprehensive Assessment of Full-Length Hepatitis C Viral Genomes

37. THU-253 - Comparison of next Generation Sequencing Technologies for the Comprehensive Assessment of Full-Length Hepatitis C Viral Genomes

41. Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

43. Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis

44. Genomic reconstruction of the SARS-CoV-2 epidemic in England

45. Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes

46. Recurrent SARS-CoV-2 mutations in immunodeficient patients

47. SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2

48. COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: a prospective observational cohort study

49. Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning

50. Publisher Correction: SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway

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