39,432 results on '"Camps A"'
Search Results
2. The role of oxidative stress in neurodegenerative diseases and potential antioxidant therapies
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Sienes Bailo Paula, Llorente Martín Elena, Calmarza Pilar, Montolio Breva Silvia, Bravo Gómez Adrián, Pozo Giráldez Adela, Sánchez-Pascuala Callau Joan J., Vaquer Santamaría Juana M., Dayaldasani Khialani Anita, Cerdá Micó Concepción, Camps Andreu Jordi, Sáez Tormo Guillermo, and Fort Gallifa Isabel
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antioxidants ,biomarkers ,neurodegenerative diseases ,oxidative stress ,reactive species ,Medical technology ,R855-855.5 - Abstract
The central nervous system (CNS) is essential for homeostasis and controls the physiological functions of the body. However, the biochemical characteristics of the CNS make it especially vulnerable to oxidative damage (OS). This phenomenon compromises correct CNS functioning, leading to neurodegeneration and neuronal death.
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- 2022
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3. UrbanSAM: Learning Invariance-Inspired Adapters for Segment Anything Models in Urban Construction
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Li, Chenyu, Hong, Danfeng, Zhang, Bing, Li, Yuxuan, Camps-Valls, Gustau, Zhu, Xiao Xiang, and Chanussot, Jocelyn
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Object extraction and segmentation from remote sensing (RS) images is a critical yet challenging task in urban environment monitoring. Urban morphology is inherently complex, with irregular objects of diverse shapes and varying scales. These challenges are amplified by heterogeneity and scale disparities across RS data sources, including sensors, platforms, and modalities, making accurate object segmentation particularly demanding. While the Segment Anything Model (SAM) has shown significant potential in segmenting complex scenes, its performance in handling form-varying objects remains limited due to manual-interactive prompting. To this end, we propose UrbanSAM, a customized version of SAM specifically designed to analyze complex urban environments while tackling scaling effects from remotely sensed observations. Inspired by multi-resolution analysis (MRA) theory, UrbanSAM incorporates a novel learnable prompter equipped with a Uscaling-Adapter that adheres to the invariance criterion, enabling the model to capture multiscale contextual information of objects and adapt to arbitrary scale variations with theoretical guarantees. Furthermore, features from the Uscaling-Adapter and the trunk encoder are aligned through a masked cross-attention operation, allowing the trunk encoder to inherit the adapter's multiscale aggregation capability. This synergy enhances the segmentation performance, resulting in more powerful and accurate outputs, supported by the learned adapter. Extensive experimental results demonstrate the flexibility and superior segmentation performance of the proposed UrbanSAM on a global-scale dataset, encompassing scale-varying urban objects such as buildings, roads, and water.
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- 2025
4. A Flag Decomposition for Hierarchical Datasets
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Mankovich, Nathan, Santamaria, Ignacio, Camps-Valls, Gustau, and Birdal, Tolga
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Flag manifolds encode hierarchical nested sequences of subspaces and serve as powerful structures for various computer vision and machine learning applications. Despite their utility in tasks such as dimensionality reduction, motion averaging, and subspace clustering, current applications are often restricted to extracting flags using common matrix decomposition methods like the singular value decomposition. Here, we address the need for a general algorithm to factorize and work with hierarchical datasets. In particular, we propose a novel, flag-based method that decomposes arbitrary hierarchical real-valued data into a hierarchy-preserving flag representation in Stiefel coordinates. Our work harnesses the potential of flag manifolds in applications including denoising, clustering, and few-shot learning.
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- 2025
5. Adsorption Behavior of Greenhouse Gases on Carbon Nanobelts: A Semi-Empirical Tight-Binding Approach for Environmental Application
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Aguiar, C. and Camps, I.
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Condensed Matter - Materials Science - Abstract
This research investigates the adsorption characteristics of carbon nanobelts (CNB) and Mobius carbon nanobelts (MCNB) interacting with various greenhouse gases, including NH3, CO2, CO, H2S, CH4, CH3OH, NO2, NO, and COCl2. The study employs semi-empirical tight-binding calculations via xTB software, complemented by topological analysis using MULTIWFN software. Comparative analysis reveals MCNB's superior adsorption properties, particularly for specific gases. Notable adsorption energies for MCNB were measured at -1.595eV, -0.669eV, and -0.637eV for NO, COCl2, and NO2, respectively, significantly exceeding the corresponding CNB values of -0.636eV, -0.449eV, and -0.438eV. The investigation of desorption kinetics demonstrates rapid recovery times (sub-millisecond) for most gas-nanobelt interactions, with the notable exception of the MCNB+NO system, which exhibits persistent bonding. Topological analysis confirms chemisorption mechanisms for NO, COCl2, and NO2 on both nanobelt variants, characterized by complex hybridizations of covalent and non-covalent interactions. Molecular dynamics simulations conducted in both packed configurations and dry air mixtures demonstrate the nanobelts' effective gas-attracting properties, maintaining consistent capture performance across different environmental conditions. These findings establish carbon nanobelts, particularly the Mobius configuration, as promising candidates for greenhouse gas capture technologies, offering potential applications in environmental remediation and climate change mitigation strategies.
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- 2025
6. Generalization Error Analysis for Selective State-Space Models Through the Lens of Attention
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Honarpisheh, Arya, Bozdag, Mustafa, Sznaier, Mario, and Camps, Octavia
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Computer Science - Machine Learning - Abstract
State-space models (SSMs) are a new class of foundation models that have emerged as a compelling alternative to Transformers and their attention mechanisms for sequence processing tasks. This paper provides a detailed theoretical analysis of selective SSMs, the core components of the Mamba and Mamba-2 architectures. We leverage the connection between selective SSMs and the self-attention mechanism to highlight the fundamental similarities between these models. Building on this connection, we establish a length independent covering number-based generalization bound for selective SSMs, providing a deeper understanding of their theoretical performance guarantees. We analyze the effects of state matrix stability and input-dependent discretization, shedding light on the critical role played by these factors in the generalization capabilities of selective SSMs. Finally, we empirically demonstrate the sequence length independence of the derived bounds on two tasks.
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- 2025
7. On decoding hyperbolic codes
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Camps-Moreno, Eduardo, García-Marco, Ignacio, López, Hiram H., Márquez-Corbella, Irene, Martínez-Moro, Edgar, and Sarmiento, Eliseo
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Computer Science - Information Theory ,Mathematics - Combinatorics ,94B05, 11T71, 14G50 - Abstract
This work studies several decoding algorithms for hyperbolic codes. We use some previous ideas to describe how to decode a hyperbolic code using the largest Reed-Muller code contained in it or using the smallest Reed-Muller code that contains it. A combination of these two algorithms is proposed when hyperbolic codes are defined by polynomials in two variables. Then, we compare hyperbolic codes and Cube codes (tensor product of Reed-Solomon codes) and propose decoding algorithms of hyperbolic codes based on their closest Cube codes. Finally, we adapt to hyperbolic codes the Geil and Matsumoto's generalization of Sudan's list decoding algorithm., Comment: arXiv admin note: substantial text overlap with arXiv:2107.12594
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- 2025
8. Predictive equation derived from 6,497 doubly labelled water measurements enables the detection of erroneous self-reported energy intake.
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Bajunaid, Rania, Niu, Chaoqun, Hambly, Catherine, Liu, Zongfang, Yamada, Yosuke, Aleman-Mateo, Heliodoro, Anderson, Liam, Arab, Lenore, Baddou, Issad, Bandini, Linda, Bedu-Addo, Kweku, Blaak, Ellen, Bouten, Carlijn, Brage, Soren, Buchowski, Maciej, Butte, Nancy, Camps, Stefan, Casper, Regina, Close, Graeme, Cooper, Jamie, Cooper, Richard, Das, Sai, Davies, Peter, Dabare, Prasangi, Dugas, Lara, Eaton, Simon, Ekelund, Ulf, Entringer, Sonja, Forrester, Terrence, Fudge, Barry, Gillingham, Melanie, Goris, Annelies, Gurven, Michael, El Hamdouchi, Asmaa, Haisma, Hinke, Hoffman, Daniel, Hoos, Marije, Hu, Sumei, Joonas, Noorjehan, Joosen, Annemiek, Katzmarzyk, Peter, Kimura, Misaka, Kraus, William, Kriengsinyos, Wantanee, Kuriyan, Rebecca, Kushner, Robert, Lambert, Estelle, Lanerolle, Pulani, Larsson, Christel, Leonard, William, Lessan, Nader, Löf, Marie, Martin, Corby, Matsiko, Eric, Medin, Anine, Morehen, James, Morton, James, Must, Aviva, Neuhouser, Marian, Nicklas, Theresa, Nyström, Christine, Ojiambo, Robert, Pietiläinen, Kirsi, Pitsiladis, Yannis, Plange-Rhule, Jacob, Plasqui, Guy, Prentice, Ross, Racette, Susan, Raichlen, David, Ravussin, Eric, Redman, Leanne, Reilly, John, Reynolds, Rebecca, Roberts, Susan, Samaranayakem, Dulani, Sardinha, Luis, Silva, Analiza, Sjödin, Anders, Stamatiou, Marina, Stice, Eric, Urlacher, Samuel, Van Etten, Ludo, van Mil, Edgar, Wilson, George, Yanovski, Jack, Yoshida, Tsukasa, Zhang, Xueying, Murphy-Alford, Alexia, Sinha, Srishti, Loechl, Cornelia, Luke, Amy, Pontzer, Herman, Rood, Jennifer, Sagayama, Hiroyuki, Schoeller, Dale, Westerterp, Klaas, Wong, William, and Speakman, John
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Humans ,Energy Intake ,Aged ,Adolescent ,Adult ,Female ,Child ,Middle Aged ,Male ,Child ,Preschool ,Aged ,80 and over ,Young Adult ,Self Report ,Nutrition Surveys ,Energy Metabolism ,Diet ,Body Mass Index ,Water - Abstract
Nutritional epidemiology aims to link dietary exposures to chronic disease, but the instruments for evaluating dietary intake are inaccurate. One way to identify unreliable data and the sources of errors is to compare estimated intakes with the total energy expenditure (TEE). In this study, we used the International Atomic Energy Agency Doubly Labeled Water Database to derive a predictive equation for TEE using 6,497 measures of TEE in individuals aged 4 to 96 years. The resultant regression equation predicts expected TEE from easily acquired variables, such as body weight, age and sex, with 95% predictive limits that can be used to screen for misreporting by participants in dietary studies. We applied the equation to two large datasets (National Diet and Nutrition Survey and National Health and Nutrition Examination Survey) and found that the level of misreporting was >50%. The macronutrient composition from dietary reports in these studies was systematically biased as the level of misreporting increased, leading to potentially spurious associations between diet components and body mass index.
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- 2025
9. The RQR algorithm
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Camps, Daan, Mach, Thomas, Vandebril, Raf, and Watkins, David S.
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Mathematics - Numerical Analysis ,65F15, 15A18 - Abstract
Pole-swapping algorithms, generalizations of bulge-chasing algorithms, have been shown to be a viable alternative to the bulge-chasing QZ algorithm for solving the generalized eigenvalue problem for a matrix pencil A - {\lambda}B. It is natural to try to devise a pole-swapping algorithm that solves the standard eigenvalue problem for a single matrix A. This paper introduces such an algorithm and shows that it is competitive with Francis's bulge-chasing QR algorithm., Comment: 10 pages, 1 figure
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- 2024
10. The weight hierarchy of decreasing norm-trace codes
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Camps-Moreno, Eduardo, López, Hiram H., Matthews, Gretchen L., and San-José, Rodrigo
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Computer Science - Information Theory ,Mathematics - Commutative Algebra ,Mathematics - Algebraic Geometry ,94B05, 11T71, 14G50 - Abstract
The Generalized Hamming weights and their relative version, which generalize the minimum distance of a linear code, are relevant to numerous applications, including coding on the wire-tap channel of type II, $t$-resilient functions, bounding the cardinality of the output in list decoding algorithms, ramp secret sharing schemes, and quantum error correction. The generalized Hamming weights have been determined for some families of codes, including Cartesian codes and Hermitian one-point codes. In this paper, we determine the generalized Hamming weights of decreasing norm-trace codes, which are linear codes defined by evaluating monomials that are closed under divisibility on the rational points of the extended norm-trace curve given by $x^{u} = y^{q^{s - 1}} + y^{q^{s - 2}} + \cdots + y$ over the finite field of cardinality $q^s$, where $u$ is a positive divisor of $\frac{q^s - 1}{q - 1}$. As a particular case, we obtain the weight hierarchy of one-point norm-trace codes and recover the result of Barbero and Munuera (2001) giving the weight hierarchy of one-point Hermitian codes. We also study the relative generalized Hamming weights for these codes and use them to construct impure quantum codes with excellent parameters.
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- 2024
11. Local Clustering Decoder: a fast and adaptive hardware decoder for the surface code
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Ziad, Abbas B., Zalawadiya, Ankit, Topal, Canberk, Camps, Joan, Gehér, György P., Stafford, Matthew P., and Turner, Mark L.
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Quantum Physics - Abstract
To avoid prohibitive overheads in performing fault-tolerant quantum computation, the decoding problem needs to be solved accurately and at speeds sufficient for fast feedback. Existing decoding systems fail to satisfy both of these requirements, meaning they either slow down the quantum computer or reduce the number of operations that can be performed before the quantum information is corrupted. We introduce the Local Clustering Decoder as a solution that simultaneously achieves the accuracy and speed requirements of a real-time decoding system. Our decoder is implemented on FPGAs and exploits hardware parallelism to keep pace with the fastest qubit types. Further, it comprises an adaptivity engine that allows the decoder to update itself in real-time in response to control signals, such as heralded leakage events. Under a realistic circuit-level noise model where leakage is a dominant error source, our decoder enables one million error-free quantum operations with 4x fewer physical qubits when compared to standard non-adaptive decoding. This is achieved whilst decoding in under 1 us per round with modest FPGA resources, demonstrating that high-accuracy real-time decoding is possible, and reducing the qubit counts required for large-scale fault-tolerant quantum computation.
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- 2024
12. Explainable Earth Surface Forecasting under Extreme Events
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Pellicer-Valero, Oscar J., Fernández-Torres, Miguel-Ángel, Ji, Chaonan, Mahecha, Miguel D., and Camps-Valls, Gustau
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Computer Science - Machine Learning - Abstract
With climate change-related extreme events on the rise, high dimensional Earth observation data presents a unique opportunity for forecasting and understanding impacts on ecosystems. This is, however, impeded by the complexity of processing, visualizing, modeling, and explaining this data. To showcase how this challenge can be met, here we train a convolutional long short-term memory-based architecture on the novel DeepExtremeCubes dataset. DeepExtremeCubes includes around 40,000 long-term Sentinel-2 minicubes (January 2016-October 2022) worldwide, along with labeled extreme events, meteorological data, vegetation land cover, and topography map, sampled from locations affected by extreme climate events and surrounding areas. When predicting future reflectances and vegetation impacts through kernel normalized difference vegetation index, the model achieved an R$^2$ score of 0.9055 in the test set. Explainable artificial intelligence was used to analyze the model's predictions during the October 2020 Central South America compound heatwave and drought event. We chose the same area exactly one year before the event as counterfactual, finding that the average temperature and surface pressure are generally the best predictors under normal conditions. In contrast, minimum anomalies of evaporation and surface latent heat flux take the lead during the event. A change of regime is also observed in the attributions before the event, which might help assess how long the event was brewing before happening. The code to replicate all experiments and figures in this paper is publicly available at https://github.com/DeepExtremes/txyXAI
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- 2024
13. TODDLERS: A New UV to Millimeter Emission Library for Star-Forming Regions. II. Star Formation Rate Indicators Using Auriga Zoom Simulations
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Kapoor, Anand Utsav, Baes, Maarten, van der Wel, Arjen, Gebek, Andrea, Camps, Peter, Smith, Aaron, Boquien, Médéric, Andreadis, Nick, and Vicens, Sebastien
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Astrophysics - Astrophysics of Galaxies - Abstract
Current galaxy formation simulations often approximate star-formation, necessitating models of star-forming regions to produce observables. In the first paper of the series, we introduced TODDLERS, a time-resolved model of UV-mm emission from star-forming regions implemented in the radiative transfer code SKIRT. This work uses SKIRT-TODDLERS to produce synthetic observations, demonstrating its potential through observables related to star-formation and comparing results with existing models in SKIRT. We calculate broadband and line emission maps for 30 Milky Way-like galaxies from the Auriga simulation at z=0. Analyzing FUV and IR data, we calculate kpc-resolved IR correction factors (k_IR), quantifying the ratio of FUV luminosity absorbed by dust to reprocessed IR luminosity. We use IR maps to calculate kpc-scale MIR (8 micron / 24 micron) and FIR (70 micron / 500 micron) colors. H alpha and H beta line maps are used to study the Balmer decrement and dust correction. We also verify the fidelity of our model FIR fine structure lines as SFR indicators. We find that the Auriga integrated UV-mm SEDs show higher FUV/NUV attenuation and lower 24 micron emission when using TODDLERS instead of the existing models in SKIRT, alleviating tensions with observations. The light-weighted mean k_IR increases with aperture and inclination, while its correlation with kpc-resolved sSFR is weaker than literature values. Kpc-scale MIR-FIR colors agree excellently with local observations, with anti-correlation degree varying by galaxy morphology. The Balmer decrement effectively corrects for dust, with attenuation law varying with dust amount. H alpha emission attenuation levels are comparable to high-density regions in state-of-the-art simulations. FIR fine-structure line emission-based luminosity-SFR relations align with global observations, [CII] showing best agreement., Comment: 22 pages, 20 figures. Accepted for publication in Astronomy and Astrophysics on October 21, 2024
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- 2024
- Full Text
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14. Quantum-centric supercomputing for materials science: A perspective on challenges and future directions
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Alexeev, Yuri, Amsler, Maximilian, Barroca, Marco Antonio, Bassini, Sanzio, Battelle, Torey, Camps, Daan, Casanova, David, Choi, Young Jay, Chong, Frederic T, Chung, Charles, Codella, Christopher, Córcoles, Antonio D, Cruise, James, Di Meglio, Alberto, Duran, Ivan, Eckl, Thomas, Economou, Sophia, Eidenbenz, Stephan, Elmegreen, Bruce, Fare, Clyde, Faro, Ismael, Fernández, Cristina Sanz, Ferreira, Rodrigo Neumann Barros, Fuji, Keisuke, Fuller, Bryce, Gagliardi, Laura, Galli, Giulia, Glick, Jennifer R, Gobbi, Isacco, Gokhale, Pranav, de la Puente Gonzalez, Salvador, Greiner, Johannes, Gropp, Bill, Grossi, Michele, Gull, Emanuel, Healy, Burns, Hermes, Matthew R, Huang, Benchen, Humble, Travis S, Ito, Nobuyasu, Izmaylov, Artur F, Javadi-Abhari, Ali, Jennewein, Douglas, Jha, Shantenu, Jiang, Liang, Jones, Barbara, de Jong, Wibe Albert, Jurcevic, Petar, Kirby, William, Kister, Stefan, Kitagawa, Masahiro, Klassen, Joel, Klymko, Katherine, Koh, Kwangwon, Kondo, Masaaki, Kürkçüog̃lu, Dog̃a Murat, Kurowski, Krzysztof, Laino, Teodoro, Landfield, Ryan, Leininger, Matt, Leyton-Ortega, Vicente, Li, Ang, Lin, Meifeng, Liu, Junyu, Lorente, Nicolas, Luckow, Andre, Martiel, Simon, Martin-Fernandez, Francisco, Martonosi, Margaret, Marvinney, Claire, Medina, Arcesio Castaneda, Merten, Dirk, Mezzacapo, Antonio, Michielsen, Kristel, Mitra, Abhishek, Mittal, Tushar, Moon, Kyungsun, Moore, Joel, Mostame, Sarah, Motta, Mario, Na, Young-Hye, Nam, Yunseong, Narang, Prineha, Ohnishi, Yu-ya, Ottaviani, Daniele, Otten, Matthew, Pakin, Scott, Pascuzzi, Vincent R, Pednault, Edwin, Piontek, Tomasz, Pitera, Jed, Rall, Patrick, Ravi, Gokul Subramanian, Robertson, Niall, Rossi, Matteo AC, Rydlichowski, Piotr, Ryu, Hoon, Samsonidze, Georgy, Sato, Mitsuhisa, and Saurabh, Nishant
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Data Management and Data Science ,Distributed Computing and Systems Software ,Information and Computing Sciences ,Information Systems ,Networking and Information Technology R&D (NITRD) ,Quantum-centric supercomputing ,Quantum computing ,Materials science ,High-performance computing ,Computer Software ,Distributed Computing ,Data management and data science ,Distributed computing and systems software ,Information systems - Abstract
Computational models are an essential tool for the design, characterization, and discovery of novel materials. Computationally hard tasks in materials science stretch the limits of existing high-performance supercomputing centers, consuming much of their resources for simulation, analysis, and data processing. Quantum computing, on the other hand, is an emerging technology with the potential to accelerate many of the computational tasks needed for materials science. In order to do that, the quantum technology must interact with conventional high-performance computing in several ways: approximate results validation, identification of hard problems, and synergies in quantum-centric supercomputing. In this paper, we provide a perspective on how quantum-centric supercomputing can help address critical computational problems in materials science, the challenges to face in order to solve representative use cases, and new suggested directions.
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- 2024
15. Long-lived oscillations of metastable states in neutral atom systems
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Darbha, Siva, Kornjača, Milan, Liu, Fangli, Balewski, Jan, Hirsbrunner, Mark R, Lopes, Pedro LS, Wang, Sheng-Tao, Van Beeumen, Roel, Klymko, Katherine, and Camps, Daan
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Quantum Physics ,Atomic ,Molecular and Optical Physics ,Physical Sciences ,Chemical sciences ,Engineering ,Physical sciences - Abstract
Metastable states arise in a range of quantum systems and can be observed in various dynamical scenarios, including decay, bubble nucleation, and long-lived oscillations. The phenomenology of metastable states has been examined in quantum many-body systems, notably in one-dimensional (1D) ferromagnetic Ising spin systems and superfluids. In this paper, we study long-lived oscillations of metastable and ground states in 1D antiferromagnetic neutral atom chains with long-range Rydberg interactions. We use a staggered local detuning field to achieve confinement. Using theoretical and numerical models, we identify novel spectral signatures of quasiparticle oscillations distinct to antiferromagnetic neutral atom systems and interpret them using a classical energy model of short-range meson repulsion. Finally, we evaluate the experimental accessibility of our proposed setup on current neutral-Atom platforms and discuss experimental feasibility and constraints.
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- 2024
16. False vacuum decay and nucleation dynamics in neutral atom systems
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Darbha, Siva, Kornjača, Milan, Liu, Fangli, Balewski, Jan, Hirsbrunner, Mark R, Lopes, Pedro LS, Wang, Sheng-Tao, Van Beeumen, Roel, Camps, Daan, and Klymko, Katherine
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Quantum Physics ,Atomic ,Molecular and Optical Physics ,Physical Sciences ,Chemical sciences ,Engineering ,Physical sciences - Abstract
Metastable states of quantum many-body systems with confinement offer a means to simulate false vacuum phenomenology, including nonequilibrium dynamical processes like decay by nucleation, in truncated limits. Recent work has examined the decay process in one-dimensional (1D) ferromagnetic Ising spins and superfluids. In this paper, we study nucleation dynamics in 1D antiferromagnetic neutral atom chains with Rydberg interactions, using both numerical simulations and analytic modeling. We apply a staggered local detuning field to generate the metastable and ground states. Our efforts focus on two dynamical regimes: decay and annealing. In the first, we corroborate the phenomenological decay rate scaling and determine the associated parameter range for the decay process; in the second, we uncover and elucidate a procedure to anneal the metastable state from the initial to the final system, with intermediate nucleation events. We further propose experimental protocols to prepare the required states and perform quenches on near-term neutral atom quantum simulators, examining the experimental feasibility of our proposed setup and parameter regime.
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- 2024
17. Efficient Measurement-Driven Eigenenergy Estimation with Classical Shadows
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Shen, Yizhi, Buzali, Alex, Hu, Hong-Ye, Klymko, Katherine, Camps, Daan, Yelin, Susanne F., and Van Beeumen, Roel
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Quantum Physics - Abstract
Quantum algorithms exploiting real-time evolution under a target Hamiltonian have demonstrated remarkable efficiency in extracting key spectral information. However, the broader potential of these methods, particularly beyond ground state calculations, is underexplored. In this work, we introduce the framework of multi-observable dynamic mode decomposition (MODMD), which combines the observable dynamic mode decomposition, a measurement-driven eigensolver tailored for near-term implementation, with classical shadow tomography. MODMD leverages random scrambling in the classical shadow technique to construct, with exponentially reduced resource requirements, a signal subspace that encodes rich spectral information. Notably, we replace typical Hadamard-test circuits with a protocol designed to predict low-rank observables, thus marking a new application of classical shadow tomography for predicting many low-rank observables. We establish theoretical guarantees on the spectral approximation from MODMD, taking into account distinct sources of error. In the ideal case, we prove that the spectral error scales as $\exp(- \Delta E t_{\rm max})$, where $\Delta E$ is the Hamiltonian spectral gap and $t_{\rm max}$ is the maximal simulation time. This analysis provides a rigorous justification of the rapid convergence observed across simulations. To demonstrate the utility of our framework, we consider its application to fundamental tasks, such as determining the low-lying, i.e. ground or excited, energies of representative many-body systems. Our work paves the path for efficient designs of measurement-driven algorithms on near-term and early fault-tolerant quantum devices., Comment: 32 pages (main text 15 pages), 7 figures (main text 5 figures)
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- 2024
18. X-ray polarisation in AGN circumnuclear media. Polarisation framework and 2D torus models
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Meulen, Bert Vander, Camps, Peter, Savic, Djordje, Baes, Maarten, Matt, Giorgio, and Stalevski, Marko
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Astrophysics - High Energy Astrophysical Phenomena - Abstract
Cold gas and dust reprocess the X-ray emission of active galactic nuclei (AGN), producing spectro-polarimetric features in the X-ray band. The recent launch of IXPE allows for observations of this X-ray polarisation signal, encoding unique information on the circumnuclear medium of AGN. However, the models for interpreting these polarimetric data are under-explored and do not reach the same level of sophistication as the corresponding spectral models. We aim at closing the gap between the spectral and spectro-polarimetric modelling of AGN circumnuclear media by providing the tools for simulating X-ray polarisation in complex 3D transfer media alongside X-ray spectra. We lay out the framework for X-ray polarisation in 3D radiative transfer simulations and provide an implementation to the 3D radiative transfer code SKIRT, focussing on (de)polarisation due to scattering and fluorescent re-emission. As a first application, we studied a 2D toroidal reprocessor of cold gas, modelling the AGN circumnuclear medium. For the 2D torus model, we find a complex behaviour of the polarisation angle with photon energy, which we interpret as a balance between the reprocessed photon flux originating from different sky regions, with a direct link to the torus geometry. We calculated a large grid of AGN torus models and demonstrated how spatially resolved polarisation maps could form a useful tool for interpreting the geometrical information that is encoded in IXPE observations. With this work, we release high-resolution AGN torus templates that simultaneously describe X-ray spectra and spectro-polarimetry, for observational data fitting with XSPEC. The SKIRT code can now model X-ray polarisation simultaneously with X-ray spectra and provide synthetic spectro-polarimetric observations for complex 3D circumnuclear media, with all features of the established SKIRT framework available., Comment: 16 pages, 13 figures, accepted for publication in Astronomy & Astrophysics
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- 2024
19. Personalized Topology-Informed Localization of Standard 12-Lead ECG Electrode Placement from Incomplete Cardiac MRIs for Efficient Cardiac Digital Twins
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Li, Lei, Smith, Hannah, Lyu, Yilin, Camps, Julia, Qian, Shuang, Rodriguez, Blanca, Banerjee, Abhirup, and Grau, Vicente
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Electrical Engineering and Systems Science - Image and Video Processing ,Computer Science - Computer Vision and Pattern Recognition ,Physics - Medical Physics - Abstract
Cardiac digital twins (CDTs) offer personalized in-silico cardiac representations for the inference of multi-scale properties tied to cardiac mechanisms. The creation of CDTs requires precise information about the electrode position on the torso, especially for the personalized electrocardiogram (ECG) calibration. However, current studies commonly rely on additional acquisition of torso imaging and manual/semi-automatic methods for ECG electrode localization. In this study, we propose a novel and efficient topology-informed model to fully automatically extract personalized ECG standard electrode locations from 2D clinically standard cardiac MRIs. Specifically, we obtain the sparse torso contours from the cardiac MRIs and then localize the standard electrodes of 12-lead ECG from the contours. Cardiac MRIs aim at imaging of the heart instead of the torso, leading to incomplete torso geometry within the imaging. To tackle the missing topology, we incorporate the electrodes as a subset of the keypoints, which can be explicitly aligned with the 3D torso topology. The experimental results demonstrate that the proposed model outperforms the time-consuming conventional model projection-based method in terms of accuracy (Euclidean distance: $1.24 \pm 0.293$ cm vs. $1.48 \pm 0.362$ cm) and efficiency ($2$~s vs. $30$-$35$~min). We further demonstrate the effectiveness of using the detected electrodes for in-silico ECG simulation, highlighting their potential for creating accurate and efficient CDT models. The code is available at https://github.com/lileitech/12lead_ECG_electrode_localizer.
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- 2024
20. Causal machine learning for sustainable agroecosystems
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Sitokonstantinou, Vasileios, Porras, Emiliano Díaz Salas, Bautista, Jordi Cerdà, Piles, Maria, Athanasiadis, Ioannis, Kerner, Hannah, Martini, Giulia, Sweet, Lily-belle, Tsoumas, Ilias, Zscheischler, Jakob, and Camps-Valls, Gustau
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Computers and Society - Abstract
In a changing climate, sustainable agriculture is essential for food security and environmental health. However, it is challenging to understand the complex interactions among its biophysical, social, and economic components. Predictive machine learning (ML), with its capacity to learn from data, is leveraged in sustainable agriculture for applications like yield prediction and weather forecasting. Nevertheless, it cannot explain causal mechanisms and remains descriptive rather than prescriptive. To address this gap, we propose causal ML, which merges ML's data processing with causality's ability to reason about change. This facilitates quantifying intervention impacts for evidence-based decision-making and enhances predictive model robustness. We showcase causal ML through eight diverse applications that benefit stakeholders across the agri-food chain, including farmers, policymakers, and researchers.
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- 2024
21. Non-Clifford diagonalization for measurement shot reduction in quantum expectation value estimation
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Sawaya, Nicolas PD, Camps, Daan, Tubman, Norm M., Rotskoff, Grant M., and LaRose, Ryan
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Quantum Physics ,Physics - Chemical Physics - Abstract
Estimating expectation values on near-term quantum computers often requires a prohibitively large number of measurements. One widely-used strategy to mitigate this problem has been to partition an operator's Pauli terms into sets of mutually commuting operators. Here, we introduce a method that relaxes this constraint of commutativity, instead allowing for entirely arbitrary terms to be grouped together, save a locality constraint. The key idea is that we decompose the operator into arbitrary tensor products with bounded tensor size, ignoring Pauli commuting relations. This method -- named $k$-NoCliD ($k$-local non-Clifford diagonalization) -- allows one to measure in far fewer bases in most cases, often (though not always) at the cost of increasing the circuit depth. We introduce several partitioning algorithms tailored to both fermionic and bosonic Hamiltonians. For electronic structure, vibrational structure, Fermi-Hubbard, and Bose-Hubbard Hamiltonians, we show that $k$-NoCliD reduces the number of circuit shots, often by a very large margin., Comment: 13 pages, 4 figures
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- 2024
22. Quantum Rational Transformation Using Linear Combinations of Hamiltonian Simulations
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Shen, Yizhi, Van Buggenhout, Niel, Camps, Daan, Klymko, Katherine, and Van Beeumen, Roel
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Quantum Physics - Abstract
Rational functions are exceptionally powerful tools in scientific computing, yet their abilities to advance quantum algorithms remain largely untapped. In this paper, we introduce effective implementations of rational transformations of a target operator on quantum hardware. By leveraging suitable integral representations of the operator resolvent, we show that rational transformations can be performed efficiently with Hamiltonian simulations using a linear-combination-of-unitaries (LCU). We formulate two complementary LCU approaches, discrete-time and continuous-time LCU, each providing unique strategies to decomposing the exact integral representations of a resolvent. We consider quantum rational transformation for the ubiquitous task of approximating functions of a Hermitian operator, with particular emphasis on the elementary signum function. For illustration, we discuss its application to the ground and excited state problems. Combining rational transformations with observable dynamic mode decomposition (ODMD), our recently developed noise-resilient quantum eigensolver, we design a fully real-time approach for resolving many-body spectra. Our numerical demonstration on spin systems indicates that our real-time framework is compact and achieves accurate estimation of the low-lying energies., Comment: 34 pages (main text 26 pages)
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- 2024
23. HAT: History-Augmented Anchor Transformer for Online Temporal Action Localization
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Reza, Sakib, Zhang, Yuexi, Moghaddam, Mohsen, and Camps, Octavia
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Online video understanding often relies on individual frames, leading to frame-by-frame predictions. Recent advancements such as Online Temporal Action Localization (OnTAL), extend this approach to instance-level predictions. However, existing methods mainly focus on short-term context, neglecting historical information. To address this, we introduce the History-Augmented Anchor Transformer (HAT) Framework for OnTAL. By integrating historical context, our framework enhances the synergy between long-term and short-term information, improving the quality of anchor features crucial for classification and localization. We evaluate our model on both procedural egocentric (PREGO) datasets (EGTEA and EPIC) and standard non-PREGO OnTAL datasets (THUMOS and MUSES). Results show that our model outperforms state-of-the-art approaches significantly on PREGO datasets and achieves comparable or slightly superior performance on non-PREGO datasets, underscoring the importance of leveraging long-term history, especially in procedural and egocentric action scenarios. Code is available at: https://github.com/sakibreza/ECCV24-HAT/, Comment: Accepted to ECCV 2024
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- 2024
24. Intrinsic line profiles for X-ray fluorescent lines in SKIRT
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Meulen, Bert Vander, Camps, Peter, Tsujimoto, Masahiro, and Wada, Keiichi
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Astrophysics - High Energy Astrophysical Phenomena - Abstract
We included the intrinsic line profiles of the strongest fluorescent lines in the X-ray radiative transfer code SKIRT to model the cold-gas structure and kinematics based on high-resolution line observations from XRISM/Resolve and Athena/X-IFU. The intrinsic line profiles of the Ka and Kb lines of Cr, Mn, Fe, Co, Ni, and Cu were implemented based on a multi-Lorentzian parameterisation and line energies are sampled from these Lorentzian components during the radiative transfer routine. In the optically thin regime, the SKIRT results match the intrinsic line profiles as measured in the laboratory. With a more complex 3D model that also includes kinematics, we find that the intrinsic line profiles are broadened and shifted to an extent that will be detectable with XRISM/Resolve; this model also demonstrates the importance of the intrinsic line shapes for constraining kinematics. We find that observed line profiles directly trace the cold-gas kinematics, without any additional radiative transfer effects. With the advent of the first XRISM/Resolve data, this update to the X-ray radiative transfer framework of SKIRT is timely and provides a unique tool for constraining the velocity structure of cold gas from X-ray microcalorimeter spectra., Comment: 6 pages, 3 figures, accepted for publication in Astronomy & Astrophysics
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- 2024
25. Binary Triorthogonal and CSS-T Codes for Quantum Error Correction
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Camps-Moreno, Eduardo, López, Hiram H., Matthews, Gretchen L., Ruano, Diego, San-José, Rodrigo, and Soprunov, Ivan
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Computer Science - Information Theory - Abstract
In this paper, we study binary triorthogonal codes and their relation to CSS-T quantum codes. We characterize the binary triorthogonal codes that are minimal or maximal with respect to the CSS-T poset, and we also study how to derive new triorthogonal matrices from existing ones. Given a binary triorthogonal matrix, we characterize which of its equivalent matrices are also triorthogonal. As a consequence, we show that a binary triorthogonal matrix uniquely determines the parameters of the corresponding triorthogonal quantum code, meaning that any other equivalent matrix that is also triorthogonal gives rise to a triorthogonal quantum code with the same parameters.
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- 2024
26. Earth System Data Cubes: Avenues for advancing Earth system research
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Montero, David, Kraemer, Guido, Anghelea, Anca, Aybar, César, Brandt, Gunnar, Camps-Valls, Gustau, Cremer, Felix, Flik, Ida, Gans, Fabian, Habershon, Sarah, Ji, Chaonan, Kattenborn, Teja, Martínez-Ferrer, Laura, Martinuzzi, Francesco, Reinhardt, Martin, Söchting, Maximilian, Teber, Khalil, and Mahecha, Miguel D.
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Databases - Abstract
Recent advancements in Earth system science have been marked by the exponential increase in the availability of diverse, multivariate datasets characterised by moderate to high spatio-temporal resolutions. Earth System Data Cubes (ESDCs) have emerged as one suitable solution for transforming this flood of data into a simple yet robust data structure. ESDCs achieve this by organising data into an analysis-ready format aligned with a spatio-temporal grid, facilitating user-friendly analysis and diminishing the need for extensive technical data processing knowledge. Despite these significant benefits, the completion of the entire ESDC life cycle remains a challenging task. Obstacles are not only of a technical nature but also relate to domain-specific problems in Earth system research. There exist barriers to realising the full potential of data collections in light of novel cloud-based technologies, particularly in curating data tailored for specific application domains. These include transforming data to conform to a spatio-temporal grid with minimum distortions and managing complexities such as spatio-temporal autocorrelation issues. Addressing these challenges is pivotal for the effective application of Artificial Intelligence (AI) approaches. Furthermore, adhering to open science principles for data dissemination, reproducibility, visualisation, and reuse is crucial for fostering sustainable research. Overcoming these challenges offers a substantial opportunity to advance data-driven Earth system research, unlocking the full potential of an integrated, multidimensional view of Earth system processes. This is particularly true when such research is coupled with innovative research paradigms and technological progress.
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- 2024
- Full Text
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27. Tetrahedral grids in Monte Carlo radiative transfer
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Lauwers, Arno, Baes, Maarten, Camps, Peter, and Meulen, Bert Vander
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Astrophysics - Astrophysics of Galaxies - Abstract
Context. 3D numerical simulations of radiative transfer are crucial for understanding complex astrophysical objects. For Monte Carlo radiative transfer, the spatial grid design is critical yet complex. Common grids include hierarchical octree and unstructured Voronoi grids, each with its own strengths and weaknesses. Tetrahedral grids, widely used in ray-tracing graphics, are a potential alternative. Aims. We explore the possibilities, advantages, and limitations of tetrahedral grids for Monte Carlo radiative transfer, comparing their performance with other grid structures. Method. We integrated a tetrahedral grid structure, using the TetGen library, into the SKIRT Monte Carlo radiative transfer code. Tetrahedral grids can be imported or adaptively constructed and refined within SKIRT. We implemented an efficient grid traversal method using Pl\"ucker coordinates and Pl\"ucker products. Results. We validated the tetrahedral grid construction and traversal algorithm with 2D radiative transfer benchmarks. In a simple 3D model, we compared the performance of tetrahedral, octree, and Voronoi grids. The octree grid outperformed the others in traversal speed, while the tetrahedral grid had the lowest grid quality. Overall, tetrahedral grids performed worse than octree and Voronoi grids. Conclusion. While tetrahedral grids may not be ideal for most astrophysical simulations, they offer a viable unstructured alternative to Voronoi grids for specific applications, such as post-processing hydrodynamical simulations on tetrahedral or unstructured grids., Comment: 10 pages, 8 figures, abstract was shortened to fit the arxiv abstract requirements, article is accepted to Astronomy & Astrophysics (in production)
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- 2024
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28. Face Reconstruction Transfer Attack as Out-of-Distribution Generalization
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Jung, Yoon Gyo, Park, Jaewoo, Dong, Xingbo, Park, Hojin, Teoh, Andrew Beng Jin, and Camps, Octavia
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence - Abstract
Understanding the vulnerability of face recognition systems to malicious attacks is of critical importance. Previous works have focused on reconstructing face images that can penetrate a targeted verification system. Even in the white-box scenario, however, naively reconstructed images misrepresent the identity information, hence the attacks are easily neutralized once the face system is updated or changed. In this paper, we aim to reconstruct face images which are capable of transferring face attacks on unseen encoders. We term this problem as Face Reconstruction Transfer Attack (FRTA) and show that it can be formulated as an out-of-distribution (OOD) generalization problem. Inspired by its OOD nature, we propose to solve FRTA by Averaged Latent Search and Unsupervised Validation with pseudo target (ALSUV). To strengthen the reconstruction attack on OOD unseen encoders, ALSUV reconstructs the face by searching the latent of amortized generator StyleGAN2 through multiple latent optimization, latent optimization trajectory averaging, and unsupervised validation with a pseudo target. We demonstrate the efficacy and generalization of our method on widely used face datasets, accompanying it with extensive ablation studies and visually, qualitatively, and quantitatively analyses. The source code will be released., Comment: Accepted to ECCV2024
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- 2024
29. Multicenter In-House Evaluation of an Amplicon-Based Next−Generation Sequencing Panel for Comprehensive Molecular Profiling: Multicenter Evaluation of the OCA Plus Panel
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Jantus-Lewintre, Eloisa, Rappa, Alessandra, Ruano, Dina, van Egmond, Demi, Gallach, Sandra, Gozuyasli, Dilce, Durães, Cecília, Costa, José Luis, Camps, Carlos, Lacroix, Ludovic, Kashofer, Karl, van Wezel, Tom, and Barberis, Massimo
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- 2025
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30. Preoperative breast MRI reduces reoperations for unilateral invasive lobular carcinoma: a patient-matched analysis from the MIPA study
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Cozzi, Andrea, Di Leo, Giovanni, Houssami, Nehmat, Gilbert, Fiona J., Helbich, Thomas H., Álvarez Benito, Marina, Balleyguier, Corinne, Bazzocchi, Massimo, Bult, Peter, Calabrese, Massimo, Camps Herrero, Julia, Cartia, Francesco, Cassano, Enrico, Clauser, Paola, de Lima Docema, Marcos F., Depretto, Catherine, Dominelli, Valeria, Forrai, Gábor, Girometti, Rossano, Harms, Steven E., Hilborne, Sarah, Ienzi, Raffaele, Lobbes, Marc B. I., Losio, Claudio, Mann, Ritse M., Montemezzi, Stefania, Obdeijn, Inge-Marie, Aksoy Ozcan, Umit, Pediconi, Federica, Pinker, Katja, Preibsch, Heike, Raya Povedano, José L., Rossi Saccarelli, Carolina, Sacchetto, Daniela, Scaperrotta, Gianfranco P., Schlooz, Margrethe, Szabó, Botond K., Taylor, Donna B., Ulus, Sıla Ö., Van Goethem, Mireille, Veltman, Jeroen, Weigel, Stefanie, Wenkel, Evelyn, Zuiani, Chiara, and Sardanelli, Francesco
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- 2025
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31. Insights into the phylogeny and evolution of the genus Dendrodoris (Mollusca: Nudibranchia) with the description of a new deep-sea species: New insights into Dendrodoris evolution
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Galià-Camps, Carles, Enguídanos García, Alba, Cobb-Fletcher, Janessa, Garcia, Emilio F., and Valdés, Ángel
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- 2025
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32. Cardiac conduction system regeneration prevents arrhythmias after myocardial infarction
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Sayers, Judy R., Martinez-Navarro, Hector, Sun, Xin, de Villiers, Carla, Sigal, Sarah, Weinberger, Michael, Rodriguez, Claudio Cortes, Riebel, Leto Luana, Berg, Lucas Arantes, Camps, Julia, Herring, Neil, Rodriguez, Blanca, Sauka-Spengler, Tatjana, and Riley, Paul R.
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- 2025
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33. Analysis of the optical performance of intraocular lenses using profilometric measurements
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Miret, Juan J., Camps, Vicente J., García, Celia, Caballero, Maria T., and Gonzalez-Leal, Juan M.
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- 2025
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34. Angiogenic factors versus fetomaternal Doppler for fetal growth restriction at term: an open-label, randomized controlled trial
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Garcia-Manau, Pablo, Bonacina, Erika, Martin-Alonso, Raquel, Martin, Lourdes, Palacios, Ana, Sanchez-Camps, Maria Luisa, Lesmes, Cristina, Hurtado, Ivan, Perez, Esther, Tubau, Albert, Ibañez, Patricia, Alcoz, Marina, Valiño, Nuria, Moreno, Elena, Borrero, Carlota, Garcia, Esperanza, Lopez-Quesada, Eva, Diaz, Sonia, Broullon, Jose Roman, Teixidor, Mireia, Chulilla, Carolina, Ferrer-Costa, Roser, Gil, Maria M., Lopez, Monica, Ramos-Forner, Gemma M., Blanco, José Eliseo, Moreno, Anna, Lázaro-Rodríguez, Marta, Vaquerizo, Oscar, Soriano, Beatriz, Fabre, Marta, Gomez-Valencia, Elena, Cuiña, Ana, Alayon, Nicolas, Sainz-Bueno, Jose Antonio, Vives, Angels, Esteve, Esther, Ocaña, Vanesa, López, Miguel Ángel, Maroto, Anna, Carreras, Elena, and Mendoza, Manel
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- 2025
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35. Questionnaire and Interview to Understand Mathematics Teachers and Occupational Therapists’ Usage of HandiMathkey
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Vigouroux, Nadine, Camps, Jean-François, Vella, Frédéric, Goos, Gerhard, Series Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Antona, Margherita, editor, Stephanidis, Constantine, editor, Gao, Qin, editor, and Zhou, Jia, editor
- Published
- 2025
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36. HAT: History-Augmented Anchor Transformer for Online Temporal Action Localization
- Author
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Reza, Sakib, Zhang, Yuexi, Moghaddam, Mohsen, Camps, Octavia, Goos, Gerhard, Series Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Leonardis, Aleš, editor, Ricci, Elisa, editor, Roth, Stefan, editor, Russakovsky, Olga, editor, Sattler, Torsten, editor, and Varol, Gül, editor
- Published
- 2025
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37. AI for Extreme Event Modeling and Understanding: Methodologies and Challenges
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Camps-Valls, Gustau, Fernández-Torres, Miguel-Ángel, Cohrs, Kai-Hendrik, Höhl, Adrian, Castelletti, Andrea, Pacal, Aytac, Robin, Claire, Martinuzzi, Francesco, Papoutsis, Ioannis, Prapas, Ioannis, Pérez-Aracil, Jorge, Weigel, Katja, Gonzalez-Calabuig, Maria, Reichstein, Markus, Rabel, Martin, Giuliani, Matteo, Mahecha, Miguel, Popescu, Oana-Iuliana, Pellicer-Valero, Oscar J., Ouala, Said, Salcedo-Sanz, Sancho, Sippel, Sebastian, Kondylatos, Spyros, Happé, Tamara, and Williams, Tristan
- Subjects
Computer Science - Artificial Intelligence ,Physics - Atmospheric and Oceanic Physics ,Physics - Geophysics - Abstract
In recent years, artificial intelligence (AI) has deeply impacted various fields, including Earth system sciences. Here, AI improved weather forecasting, model emulation, parameter estimation, and the prediction of extreme events. However, the latter comes with specific challenges, such as developing accurate predictors from noisy, heterogeneous and limited annotated data. This paper reviews how AI is being used to analyze extreme events (like floods, droughts, wildfires and heatwaves), highlighting the importance of creating accurate, transparent, and reliable AI models. We discuss the hurdles of dealing with limited data, integrating information in real-time, deploying models, and making them understandable, all crucial for gaining the trust of stakeholders and meeting regulatory needs. We provide an overview of how AI can help identify and explain extreme events more effectively, improving disaster response and communication. We emphasize the need for collaboration across different fields to create AI solutions that are practical, understandable, and trustworthy for analyzing and predicting extreme events. Such collaborative efforts aim to enhance disaster readiness and disaster risk reduction.
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- 2024
38. DeepExtremeCubes: Integrating Earth system spatio-temporal data for impact assessment of climate extremes
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Ji, Chaonan, Fincke, Tonio, Benson, Vitus, Camps-Valls, Gustau, Fernandez-Torres, Miguel-Angel, Gans, Fabian, Kraemer, Guido, Martinuzzi, Francesco, Montero, David, Mora, Karin, Pellicer-Valero, Oscar J., Robin, Claire, Soechting, Maximilian, Weynants, Melanie, and Mahecha, Miguel D.
- Subjects
Computer Science - Machine Learning ,Computer Science - Databases - Abstract
With climate extremes' rising frequency and intensity, robust analytical tools are crucial to predict their impacts on terrestrial ecosystems. Machine learning techniques show promise but require well-structured, high-quality, and curated analysis-ready datasets. Earth observation datasets comprehensively monitor ecosystem dynamics and responses to climatic extremes, yet the data complexity can challenge the effectiveness of machine learning models. Despite recent progress in deep learning to ecosystem monitoring, there is a need for datasets specifically designed to analyse compound heatwave and drought extreme impact. Here, we introduce the DeepExtremeCubes database, tailored to map around these extremes, focusing on persistent natural vegetation. It comprises over 40,000 spatially sampled small data cubes (i.e. minicubes) globally, with a spatial coverage of 2.5 by 2.5 km. Each minicube includes (i) Sentinel-2 L2A images, (ii) ERA5-Land variables and generated extreme event cube covering 2016 to 2022, and (iii) ancillary land cover and topography maps. The paper aims to (1) streamline data accessibility, structuring, pre-processing, and enhance scientific reproducibility, and (2) facilitate biosphere dynamics forecasting in response to compound extremes.
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- 2024
39. Solving the Inverse Problem of Electrocardiography for Cardiac Digital Twins: A Survey
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Li, Lei, Camps, Julia, Rodriguez, Blanca, and Grau, Vicente
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Cardiac digital twins (CDTs) are personalized virtual representations used to understand complex cardiac mechanisms. A critical component of CDT development is solving the ECG inverse problem, which enables the reconstruction of cardiac sources and the estimation of patient-specific electrophysiology (EP) parameters from surface ECG data. Despite challenges from complex cardiac anatomy, noisy ECG data, and the ill-posed nature of the inverse problem, recent advances in computational methods have greatly improved the accuracy and efficiency of ECG inverse inference, strengthening the fidelity of CDTs. This paper aims to provide a comprehensive review of the methods of solving ECG inverse problem, the validation strategies, the clinical applications, and future perspectives. For the methodologies, we broadly classify state-of-the-art approaches into two categories: deterministic and probabilistic methods, including both conventional and deep learning-based techniques. Integrating physics laws with deep learning models holds promise, but challenges such as capturing dynamic electrophysiology accurately, accessing accurate domain knowledge, and quantifying prediction uncertainty persist. Integrating models into clinical workflows while ensuring interpretability and usability for healthcare professionals is essential. Overcoming these challenges will drive further research in CDTs.
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- 2024
40. Large Language Models for Constrained-Based Causal Discovery
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Cohrs, Kai-Hendrik, Varando, Gherardo, Diaz, Emiliano, Sitokonstantinou, Vasileios, and Camps-Valls, Gustau
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Computer Science - Artificial Intelligence ,Computer Science - Computation and Language - Abstract
Causality is essential for understanding complex systems, such as the economy, the brain, and the climate. Constructing causal graphs often relies on either data-driven or expert-driven approaches, both fraught with challenges. The former methods, like the celebrated PC algorithm, face issues with data requirements and assumptions of causal sufficiency, while the latter demand substantial time and domain knowledge. This work explores the capabilities of Large Language Models (LLMs) as an alternative to domain experts for causal graph generation. We frame conditional independence queries as prompts to LLMs and employ the PC algorithm with the answers. The performance of the LLM-based conditional independence oracle on systems with known causal graphs shows a high degree of variability. We improve the performance through a proposed statistical-inspired voting schema that allows some control over false-positive and false-negative rates. Inspecting the chain-of-thought argumentation, we find causal reasoning to justify its answer to a probabilistic query. We show evidence that knowledge-based CIT could eventually become a complementary tool for data-driven causal discovery.
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- 2024
41. Leakage Mobility in Superconducting Qubits as a Leakage Reduction Unit
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Camps, Joan, Crawford, Ophelia, Gehér, György P., Gramolin, Alexander V., Stafford, Matthew P., and Turner, Mark
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Quantum Physics - Abstract
Leakage from the computational subspace is a damaging source of noise that degrades the performance of most qubit types. Unlike other types of noise, leakage cannot be overcome by standard quantum error correction techniques and requires dedicated leakage reduction units. In this work, we study the effects of leakage mobility between superconducting qubits on the performance of a quantum stability experiment, which is a benchmark for fault-tolerant logical computation. Using the Fujitsu Quantum Simulator, we perform full density-matrix simulations of stability experiments implemented on the surface code. We observe improved performance with increased mobility, suggesting leakage mobility can itself act as a leakage reduction unit by naturally moving leakage from data to auxiliary qubits, where it is removed upon reset. We compare the performance of standard error-correction circuits with "patch wiggling", a specific leakage reduction technique where data and auxiliary qubits alternate their roles in each round of error correction. We observe that patch wiggling becomes inefficient with increased leakage mobility, in contrast to the improved performance of standard circuits. These observations suggest that the damage of leakage can be overcome by stimulating leakage mobility between qubits without the need for a dedicated leakage reduction unit., Comment: 6+4 pages, 3+4 figures
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- 2024
42. 3D-HGS: 3D Half-Gaussian Splatting
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Li, Haolin, Liu, Jinyang, Sznaier, Mario, and Camps, Octavia
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Graphics - Abstract
Photo-realistic image rendering from scene 3D reconstruction is a fundamental problem in 3D computer vision. This domain has seen considerable advancements owing to the advent of recent neural rendering techniques. These techniques predominantly aim to focus on learning volumetric representations of 3D scenes and refining these representations via loss functions derived from their rendering. Among these, 3D Gaussian Splatting (3D-GS) has emerged as a preferred method, surpassing Neural Radiance Fields' (NeRFs) quality and rendering speed. 3D-GS uses parameterized 3D Gaussians to model both spatial locations and color information, combined with a tile-based fast rendering technique. Despite its superior performance, using 3D Gaussian kernels has inherent limitations in accurately representing discontinuous functions, notably at edges and corners corresponding to shape discontinuities, and across varying textures due to color discontinuities. In this paper, we introduce 3D Half-Gaussian (\textbf{3D-HGS}) kernels, which can be used as a plug-and-play kernel, to address this issue. Our experiments demonstrate their capability to improve the performance of current 3D-GS related methods and achieve state-of-the-art rendering quality performance on various datasets without compromising their rendering speed., Comment: 8 pages, 9 figures
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- 2024
43. Toward Quantum CSS-T Codes from Sparse Matrices
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Camps-Moreno, Eduardo, López, Hiram H., Matthews, Gretchen L., and McMillon, Emily
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Computer Science - Information Theory - Abstract
CSS-T codes were recently introduced as quantum error-correcting codes that respect a transversal gate. A CSS-T code depends on a pair $(C_1, C_2)$ of binary linear codes $C_1$ and $C_2$ that satisfy certain conditions. We prove that $C_1$ and $C_2$ form a CSS-T pair if and only if $C_2 \subset \operatorname{Hull}(C_1) \cap \operatorname{Hull}(C_1^2)$, where the hull of a code is the intersection of the code with its dual. We show that if $(C_1,C_2)$ is a CSS-T pair, and the code $C_2$ is degenerated on $\{i\}$, meaning that the $i^{th}$-entry is zero for all the elements in $C_2$, then the pair of punctured codes $(C_1|_i,C_2|_i)$ is also a CSS-T pair. Finally, we provide Magma code based on our results and quasi-cyclic codes as a step toward finding quantum LDPC or LDGM CSS-T codes computationally.
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- 2024
44. On the affine permutation group of certain decreasing Cartesian codes
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Camps-Moreno, Eduardo, López, Hiram H., Sarmiento, Eliseo, and Soprunov, Ivan
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Mathematics - Combinatorics - Abstract
A decreasing Cartesian code is defined by evaluating a monomial set closed under divisibility on a Cartesian set. Some well-known examples are the Reed-Solomon, Reed-Muller, and (some) toric codes. The affine permutations consist of the permutations of the code that depend on an affine transformation. In this work, we study the affine permutations of some decreasing Cartesian codes, including the case when the Cartesian set has copies of multiplicative or additive subgroups.
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- 2024
45. The Second Picard iteration of NLS on the $2d$ sphere does not regularize Gaussian random initial data
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Burq, Nicolas, Camps, Nicolas, Latocca, Mickaël, Sun, Chenmin, and Tzvetkov, Nikolay
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Mathematics - Analysis of PDEs ,35Q55, 35A01, 35R01, 35R60, 37KXX - Abstract
We consider the Wick ordered cubic Schr\"odinger equation (NLS) posed on the two-dimensional sphere, with initial data distributed according to a Gaussian measure. We show that the second Picard iteration does not improve the regularity of the initial data in the scale of the classical Sobolev spaces. This is in sharp contrast with the Wick ordered NLS on the two-dimensional tori, a model for which we know from the work of Bourgain that the second Picard iteration gains one half derivative. Our proof relies on identifying a singular part of the nonlinearity. We show that this singular part is responsible for a concentration phenomenon on a large circle (i.e. a stable closed geodesic), which prevents any regularization in the second Picard iteration., Comment: Minor changes
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- 2024
46. Probabilistic well-posedeness for the nonlinear Schr\'odinger equation on the $2d$ sphere I: positive regularities
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Burq, Nicolas, Camps, Nicolas, Sun, Chenmin, and Tzvetkov, Nikolay
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Mathematics - Analysis of PDEs ,35Q55, 35A01, 35R01, 35R60, 37KXX - Abstract
We establish the probabilistic well-posedness of the nonlinear Schr\"odinger equation on the $2d$ sphere $\mathbb{S}^{2}$. The initial data are distributed according to Gaussian measures with typical regularity $H^{s}(\mathbb{S}^{2})$, for $s>0$. This level of regularity goes significantly beyond existing deterministic results, in a regime where the flow map cannot be extended uniformly continuously., Comment: 68 pages
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- 2024
47. Modified scattering for the cubic Schr\'odinger equation on Diophantine waveguides
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Camps, Nicolas and Staffilani, Gigliola
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Mathematics - Analysis of PDEs ,35B40 - Abstract
We consider the cubic Schr\"odinger equation posed on product spaces subject to a generic Diophantine condition. Our analysis shows that the small-amplitude solutions undergo modified scattering to an effective dynamics governed by some interactions that do not amplify the Sobolev norms. This is in sharp contrast with the infinite energy cascade scenario observed by Hani--Pausader--Tzvetkov--Visciglia in the absence of Diophantine conditions., Comment: Minor changes
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- 2024
48. Solving Masked Jigsaw Puzzles with Diffusion Vision Transformers
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Liu, Jinyang, Teshome, Wondmgezahu, Ghimire, Sandesh, Sznaier, Mario, and Camps, Octavia
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Solving image and video jigsaw puzzles poses the challenging task of rearranging image fragments or video frames from unordered sequences to restore meaningful images and video sequences. Existing approaches often hinge on discriminative models tasked with predicting either the absolute positions of puzzle elements or the permutation actions applied to the original data. Unfortunately, these methods face limitations in effectively solving puzzles with a large number of elements. In this paper, we propose JPDVT, an innovative approach that harnesses diffusion transformers to address this challenge. Specifically, we generate positional information for image patches or video frames, conditioned on their underlying visual content. This information is then employed to accurately assemble the puzzle pieces in their correct positions, even in scenarios involving missing pieces. Our method achieves state-of-the-art performance on several datasets., Comment: 8 pages, 7 figures
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- 2024
49. Fractional decoding of algebraic geometry codes over extension fields
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Camps-Moreno, Eduardo, Matthews, Gretchen L., and Santos, Welington
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Computer Science - Information Theory ,Mathematics - Algebraic Geometry - Abstract
In this paper, we study algebraic geometry codes from curves over $\mathbb{F}_{q^\ell}$ through their virtual projections which are algebraic geometric codes over $\mathbb{F}_q$. We use the virtual projections to provide fractional decoding algorithms for the codes over $\mathbb{F}_{q^\ell}$. Fractional decoding seeks to perform error correction using a smaller fraction of $\mathbb{F}_q$-symbols than a typical decoding algorithm. In one instance, the bound on the number of correctable errors differs from the usual lower bound by the degree of a pole divisor of an annihilator function. In another, we view the virtual projections as interleaved codes to, with high probability, correct more errors than anticipated.
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- 2024
50. Engineering quantum states with neutral atoms
- Author
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Balewski, Jan, Kornjača, Milan, Klymko, Katherine, Darbha, Siva, Hirsbrunner, Mark R., Lopes, Pedro L. S., Liu, Fangli, and Camps, Daan
- Subjects
Quantum Physics - Abstract
Aquila, an analog quantum simulation platform developed by QuEra Computing, supports control of the position and coherent evolution of up to 256 neutral atoms. This study details novel experimental protocols designed for analog quantum simulators that generate Bell state entanglement far away from the blockade regime, construct a $Z_2$ state with a defect induced by an ancilla, and optimize the driving fields schedule to prepare excited states with enhanced fidelity. We additionally evaluate the effectiveness of readout error mitigation techniques in improving the fidelity of measurement results. All experiments were executed on Aquila from QuEra and facilitated by the AWS Braket interface. Our experimental results closely align with theoretical predictions and numerical simulations. The insights gained from this study showcase Aquila's capabilities in handling complex quantum simulations and computations, and also pave the way for new avenues of research in quantum information processing and physics that employ programmable analog hardware platforms., Comment: 7 pages, 6 figures, IEEE QCE24 - QTEM Best Paper Award - 1st Place
- Published
- 2024
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