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Studying bacterial physiology and pathogenesis often requires isolation of targeted mutants. From the early days of bacterial genetics, many genetic tools have been developed to achieve this goal in a lot of bacteria species, and a major key is to be able to manipulate the targeted genome region with a minimum impact on the rest of the genome. Here, we described a two-step protocol relevant in Legionella pneumophila. This efficient two-step protocol uses the natural transformability of L. pneumophila and linear DNA fragments as substrates for recombination without the necessity of intermediate hosts to amplify targeted DNA. Based on a suicide cassette strategy, this genetic toolbox enables to generate clean scar-free deletions, single-nucleotide mutation, transcriptional or translational fusions, as well as insertion at any chosen place in L. pneumophila chromosome, therefore enabling multiple mutations with no need of multiple selection markers.

Studying bacterial physiology and pathogenesis often requires isolation of targeted mutants. From the early days of bacterial genetics, many genetic tools have been developed to achieve this goal in a lot of bacteria species, and a major key is to be able to manipulate the targeted genome region with a minimum impact on the rest of the genome. Here, we described a two-step protocol relevant in Legionella pneumophila. This efficient two-step protocol uses the natural transformability of L. pneumophila and linear DNA fragments as substrates for recombination without the necessity of intermediate hosts to amplify targeted DNA. Based on a suicide cassette strategy, this genetic toolbox enables to generate clean scar-free deletions, single-nucleotide mutation, transcriptional or translational fusions, as well as insertion at any chosen place in L. pneumophila chromosome, therefore enabling multiple mutations with no need of multiple selection markers.

International audience; Legionnaires' disease is a severe pneumonia mainly caused by Legionella pneumophila that is treated by antibiotics. The purpose of this study was to describe the susceptibility of clinical strains of L. pneumophila to eight antibiotics used for treatment of legionellosis. The minimum inhibitory concentrations (MICs) of 109 well-characterised clinical strains of L. pneumophila serogroup 1 were determined by the broth microdilution method without charcoal and were compared with antibiotic-resistant strains selected in vitro. All strains were inhibited by low concentrations of fluoroquinolones, macrolides and rifampicin. The epidemiological cut-off values (ECOFFs) were 0.064 mg/L for ciprofloxacin, 0.064 mg/L for moxifloxacin, 0.032 mg/L for levofloxacin, 1 mg/L for erythromycin, 2 mg/L for azithromycin, 0.064 mg/L for clarithromycin, 2 mg/L for doxycycline and 0.001 mg/L for rifampicin. However, MIC distributions revealed a subpopulation of strains displaying reduced susceptibility to some macrolides (especially azithromycin), which correlated with the presence of the lpeAB genes encoding a macrolide efflux pump found specifically in sequence type (ST) ST1, ST701 and closely related STs. Thus, all isolates could be considered susceptible to the tested antibiotics, although macrolides were less active against some strains harbouring a specific efflux system.

International audience; Objectives: A previous study on 12 in vitro -selected azithromycin-resistant Legionella~pneumophila lineages showed that ribosomal mutations were major macrolide resistance determinants. In addition to these mechanisms that have been well described in many species, mutations upstream of lpeAB operon, homologous to acrAB in Escherichia~coli , were identified in two lineages. In this study, we investigated the role of LpeAB and of these mutations in macrolide resistance of L.~pneumophila . Methods: The role of LpeAB was studied by testing the antibiotic susceptibility of WT, deleted and complemented L.~pneumophila Paris strains. Translational fusion experiments using GFP as a reporter were conducted to investigate the consequences of the mutations observed in the upstream sequence of lpeAB operon. Results: We demonstrated the involvement of LpeAB in an efflux pump responsible for a macrolide-specific reduced susceptibility of L.~pneumophila Paris strain. Mutations in the upstream sequence of lpeAB operon were associated with an increased protein expression. Increased expression was also observed under sub-inhibitory macrolide concentrations in strains with both mutated and WT promoting regions. Conclusions: LpeAB are components of an efflux pump, which is a macrolide resistance determinant in L.~pneumophila Paris strain. Mutations observed in the upstream sequence of lpeAB operon in resistant lineages led to an overexpression of this efflux pump. Sub-inhibitory concentrations of macrolides themselves participated in upregulating this efflux and could constitute a first step in the acquisition of a high macrolide resistance level.

Aim The aim was to isolate and characterize Lactococcus strains with new properties compared to those of usual Lactococcus dairy starters derived from cow's milk. Methods and results Algerian dromedary's milk was screened for proteolytic isolates able to grow rapidly on agar milk medium. PCR experiments revealed that 74 proteolytic isolates belonged to the genus Lactococcus and harboured the prtP gene encoding the lactococcal cell-surface proteinase. Among these, 85% were able to ferment citrate (Cit(+) phenotype) and were classified as Lactococcus lactis ssp. lactis biovar. diacetylactis. This classification was confirmed after sequencing of the 16S rDNA gene of five Cit(+) isolates. In contrast to dairy lactococci described in the literature, several Cit(+) isolates exhibited a tolerance to 50 degrees C (Ther(+)) and alkaline pH. Two genetic approaches allowed to show the presence of four independent plasmids (so-called pTher, pPrt, pLac, pCit) associated with the four respective phenotypes: Ther(+), cell-surface proteinase activity PrtP (PrtP(+)), lactose catabolism (Lac(+)) and citrate utilization (Cit(+)). Two types of pCit plasmid were amplified by inverse PCR: class 1 was characterized by a 9-kb plasmid harbouring the expected lactococcal citQRP operon and class 2 by a 23-kb plasmid harbouring the Leuconostoc cit cluster (citI-CitMCDEFGRP). Conclusions This work enlarges knowledge of the biovariety diacetylactis by far mainly limited to the citrate-fermenting ability and suggests that the cit plasmid system of some lactococcal strains could have been acquired from another lactic acid bacteria (Leuconostoc spp.). Significance and impact of the study This study reveals new potential dairy lactococci starters of the biovariety diacetylactis able to grow rapidly in milk at a higher temperature in addition to their casein, lactose and citrate-utilizing abilities.

Lactobacillus delbrueckii subsp. bulgaricus (L. bulgaricus), a gram-positive, facultatively anaerobic, homofermentative lactic acid bacterium, plays an important role in the dairy industry because of its efficient and reliable utilization of milk constituents, mainly lactose and caseins, and its good resistance to low pH. Spontaneous mutants of L. bulgaricus, unable to grow on milk in the absence of peptide extract, were characterized by ISL3 transposition-induced deletions, including that of the prtB gene coding for the cell surface proteinase (CSP) (11). Actually, prtB is essential for L. bulgaricus growth in milk and is responsible for the first step of caseinolysis. Most L. bulgaricus strains are characterized by a high CSP activity resulting from the adaptation of this species to fast growth and rapid fermentation of milk (14). So far, four different types of genes encoding CSPs of dairy lactic acid bacteria have been cloned and sequenced: prtB from L. bulgaricus, prtP from Lactococcus lactis and Lactobacillus casei, prtS from Streptococcus thermophilus, and prtH from Lactobacillus helveticus (8, 13, 18, 21, 28, 38). Comparative sequence analysis of CSPs revealed different domains associated with putative functions (35). CSPs are synthesized as long and inactive preproproteins (∼2,000 residues). For the N terminus of CSP, eight domains have been predicted (Fig. ​(Fig.1A).1A). (i) The predomain (∼30 residues) corresponds to a signal sequence required for secretion and is removed by a specific signal peptidase during translocation through the cytoplasmic membrane. (ii) The prodomain (∼150 residues) is essential for enzyme maturation and is removed by autoproteolytic cleavage. (iii) The catalytic domain (∼500 residues, including a variable insert of about 150 residues) shows the highest similarity between CSPs and belongs to the superfamily of subtilisin-like serine proteinases, often referred to in abbreviated form as subtilases. (iv) The A domain (∼400 residues) is specific to CSP and characterized by a beta-sheet structure, but its function is not yet known. The last four domains vary among the different known CSPs and have been well characterized in PrtPs. (v) The B domain (∼500 residues) should have stabilizing functions but seems not to be essential for proteolysis, as it is absent in some CSPs. (vi) The H domain (up to 200 residues) constitutes a long helix forming a stalk-like structure able to position the A and B domains outside the bacterial cell. (vii) The W domain (∼100 residues) is predicted to be a hydrophilic domain spanning the cell wall. (viii) The AN domain (∼40 residues) is characterized by a sorting and anchoring motif (LPXTG) followed by a hydrophobic putative membrane-spanning alpha-helix and a short charged tail. This last domain is involved in anchoring many cell surface proteins from gram-positive bacteria to the cell wall via a covalent link with peptidoglycan (26). FIG. 1. Schematic representations of preproproteinase PrtP from L. lactis (A) and PrtB from L. bulgaricus and four truncated forms (PrtBδ99, PrtBδ168, PrtBδ247, and PrtBδ806) (B). The different domains of the proteinases and the ... The PrtB of L. bulgaricus strongly differs from other CSPs in its specificity of cleavage and the structure of the long C-extension domains (∼1,100 residues) (13, 23). The cleavage specificity of CSP is mainly dependent on two regions: a substrate binding site located in the catalytic domain and a short region of the A domain (35, 36). Therefore, differences in sequences between these regions of PrtPs and PrtB could explain the differences in cleavage of beta-casein (14). In addition, the different C terminus of PrtB raises the possibility of a mechanism of attachment to the cell envelope that is different from the covalent anchoring of lactococcal PrtPs to the peptidoglycan via the LPXTG motif. The present paper describes expression of the prtB gene of L. bulgaricus in the plasmid-free strain MG1363 (PrtP− PrtM−) of L. lactis subsp. cremoris (9), because no transformation procedure with L. bulgaricus led to the recovery of transformants with entire plasmid. Expression of the prtB gene complements the proteinase-negative phenotype of strain MG1363. Deletions were performed in the 3′-end region of the prtB gene, and L. lactis MG1363 cells synthesizing entire or truncated PrtBs were analyzed to determine maturation, cellular localization, stability, and cleavage specificity towards beta-casein of parental and mutant PrtB proteins.

Legionella pneumophilais a Gram-negative pathogen found mainly in water, either in a free-living form or within infected protozoans, where it replicates. This bacterium can also infect humans by inhalation of contaminated aerosols, causing a severe form of pneumonia called legionellosis or Legionnaires' disease. The involvement of type II and IV secretion systems in the virulence ofL. pneumophilais now well documented. Despite bioinformatic studies showing that a type I secretion system (T1SS) could be present in this pathogen, the functionality of this system based on the LssB, LssD, and TolC proteins has never been established. Here, we report the demonstration of the functionality of the T1SS, as well as its role in the infectious cycle ofL. pneumophila. Using deletion mutants and fusion proteins, we demonstrated that therepeats-in-toxin protein RtxA is secreted through an LssB-LssD-TolC-dependent mechanism. Moreover, fluorescence monitoring and confocal microscopy showed that this T1SS is required for entry into the host cell, although it seems dispensable to the intracellular cycle. Together, these results underline the active participation ofL. pneumophila, via its T1SS, in its internalization into host cells.

Volume 79, no. 5, p. [1936–1950][1], 2011. Page 1941: [Figure 2][2] should appear as shown below. The original [Fig. 2][2] contains an error about the Coomassie blue band of GST-LegK3 ([Fig 2B][2]) that has been corrected in the revised [Fig. 2][2]. Moreover, the figure legend explains in more

The patC gene encoding the cystathionine beta-lyase (CBL) of Lactobacillus delbrueckii subsp. bulgaricus NCDO 1489 was cloned and expressed in Escherichia coli. Overexpression of CBL complemented the methionine auxotrophy of an E. coli metC mutant, demonstrating in vivo that this enzyme functions as a CBL. However, PatC is distinguishable from the MetC CBLs by a low identity in amino acid sequence, a sensitivity to iodoacetic acid, greater thermostability and a lower substrate affinity. Homologues of patC were detected in the 13 Lb. delbrueckii strains studied, but only seven of them showed CBL activity. In constrast to CBL(+) strains, all CBL-deficient strains analysed were auxotrophic for methionine. This supports the hypothesis that CBLs from lactobacilli are probably involved in methionine biosynthesis. Moreover, the results of this study suggest that post-transcriptional mechanisms account for the differences in CBL activities observed between strains of Lb. delbrueckii.

Lactobacillus delbrueckii ssp. bulgaricus et ssp. lactis synthetisent une β-cystathionase (PatC). Cette enzyme, comme l'ensemble des β-cystathionases, requiert le phosphate de pyridoxal comme cofacteur. En revanche, elle se distingue par sa sensibilite vis-a-vis de l'acide iodoacetique. Nous avons montre que l'activite enzymatique varie au sein de l'espece L. delbrueckii. PatC pourrait participer au developpement des saveurs, en raison de son role dans le metabolisme des acides amines soufres.

Legionella pneumophila, the etiological agent of legionellosis, replicates within phagocytic cells. Crucial to biogenesis of the replicative vacuole is the Dot/Icm type 4 secretion system, which translocates a large number of effectors into the host cell cytosol. Among them is LegK2, a protein kinase that plays a key role in Legionella infection. Here, we identified the actin nucleator ARP2/3 complex as a target of LegK2. LegK2 phosphorylates the ARPC1B and ARP3 subunits of the ARP2/3 complex. LegK2-dependent ARP2/3 phosphorylation triggers global actin cytoskeleton remodeling in cells, and it impairs actin tail formation by Listeria monocytogenes, a well-known ARP2/3-dependent process. During infection, LegK2 is addressed to the Legionella-containing vacuole surface and inhibits actin polymerization on the phagosome, as revealed by legK2 gene inactivation. Consequently, LegK2 prevents late endosome/lysosome association with the phagosome and finally contributes to remodeling of the bacterium-containing phagosome into a replicative niche. The inhibition of actin polymerization by LegK2 and its effect on endosome trafficking are ARP2/3 dependent since it can be phenocopied by a specific chemical inhibitor of the ARP2/3 complex. Thus, LegK2-ARP2/3 interplay highlights an original mechanism of bacterial virulence with an unexpected role in local actin remodeling that allows bacteria to control vesicle trafficking in order to escape host defenses., IMPORTANCE Deciphering the individual contribution of each Dot/Icm type 4 secretion system substrate to the intracellular life-style of L. pneumophila remains the principal challenge in understanding the molecular basis of Legionella virulence. Our finding that LegK2 is a Dot/Icm effector that inhibits actin polymerization on the Legionella-containing vacuole importantly contributes to the deciphering of the molecular mechanisms evolved by Legionella to counteract the endocytic pathway. Indeed, our results highlight the essential role of LegK2 in preventing late endosomes from fusing with the phagosome. More generally, this work is the first demonstration of local actin remodeling as a mechanism used by bacteria to control organelle trafficking. Further, by characterizing the role of the bacterial protein kinase LegK2, we reinforce the concept that posttranslational modifications are key strategies used by pathogens to evade host cell defenses.

Legionella pneumophila is an intracellular pathogen which replicates within protozoan cells and can accidently infect alveolar macrophages, causing an acute pneumonia in humans. The second messenger cyclic di-GMP (c-di-GMP) has been shown to play key roles in the regulation of various bacterial processes, including virulence. While investigating the function of the 22 potential c-di-GMP-metabolizing enzymes of the L. pneumophila Lens strain, we found three that directly contribute to its ability to infect both protozoan and mammalian cells. These three enzymes display diguanylate cyclase (Lpl0780), phosphodiesterase (Lpl1118), and bifunctional diguanylate cyclase/phosphodiesterase (Lpl0922) activities, which are all required for the survival and intracellular replication of L. pneumophila . Mutants with deletions of the corresponding genes are efficiently taken up by phagocytic cells but are partially defective for the escape of the Legionella -containing vacuole (LCV) from the host degradative endocytic pathway and result in lower survival. In addition, Lpl1118 is required for efficient endoplasmic reticulum recruitment to the LCV. Trafficking and biogenesis of the LCV are dependent upon the orchestrated actions of several type 4 secretion system Dot/Icm effectors proteins, which exhibit differentially altered translocation in the three mutants. While translocation of some effectors remained unchanged, others appeared over- and undertranslocated. A general translocation offset of the large repertoire of Dot/Icm effectors may be responsible for the observed defects in the trafficking and biogenesis of the LCV. Our results suggest that L. pneumophila uses cyclic di-GMP signaling to fine-tune effector delivery and ensure effective evasion of the host degradative pathways and establishment of a replicative vacuole.

Les bacteries lactiques sont impliquees dans la fabrication de nombreux aliments et jouent donc un role economique important. Les techniques de biologie moleculaire ont permis de mettre en evidence une forte diversite genomique qui a conduit a la classification recente en 11 genres bacteriens : Carnobacterium, Enterococcus, Lactobacillus, Lactococcus, Leuconostoc, Oenococcus, Pediococcus, Streptococcus, Tetragenococcus, Vagococcus et Weissella. L'impact d'une telle diversite peut etre estime a travers l'etude d'une proteine isofonctionnelle : la proteinase de surface. Cette endoprotease est essentielle a une croissance bacterienne rapide dans le lait et est responsable de la premiere etape de la caseinolyse. Chez les lactocoques et les lactobacilles, on observe une variabilite de la specificite d'hydrolyse des proteinases vis-a-vis des caseines. La diversite genetique observee au sein du genre Lactobacillus se traduit par des proteinases differentes quant aux mecanismes controlant leur biosynthese, leur maturation enzymatique et leur ancrage a la paroi bacterienne.

Prolyl aminopeptidase (PepIP) of Lactobacillus delbrueckii subsp. bulgaricus displays the Gly-x-Ser-x-Gly-Gly consensus motif surrounding the catalytic serine of the prolyl oligopeptidases family. Sequence comparison revealed that this motif and two other domains appear well conserved among bacterial PepIPs and members of the alpha/beta hydrolase fold family. Secondary structural predictions of PepIP were performed from amino acid sequence and corroborated by circular dichroism analysis. These predictions well matched the core structure of alpha/beta hydrolases organised in eight beta-sheets connected by alpha-helices. We obtained 26 mutants of PepIP by chemical or site-directed mutagenesis. Most substitutions associated with stable and inactive mutant proteins were mainly located in the three conserved boxes (including the catalytic serine motif). Taken together, our results strongly suggest that PepIP belongs to the alpha/beta hydrolase fold family and that Ser107, Asp246 and His273 constitute the catalytic triad of the enzyme.

The oral bacterium Streptococcus gordonii expresses two cell wall-associated polypeptides, designated SspA (1,542 amino acid residues) and SspB (1,462 amino acid residues), that have 70% sequence identity. These polypeptides are members of the antigen I/II family of oral streptococcal adhesins and mediate the binding of streptococci to salivary glycoproteins, collagen, and other oral microorganisms such as Actinomyces naeslundii . To determine if SspA and SspB have differential binding properties, the coding sequences of the sspA and sspB genes were cloned into expression plasmid vector pTREX1-usp45LS to generate pTREX1-sspA and pTREX1-sspB, respectively, and the Ssp polypeptides were displayed on the cell surface of Lactococcus lactis MG1363. Lactococcal cells expressing similar levels of surface SspA or SspB polypeptide were then compared for their abilities to adhere to a range of antigen I/II polypeptide substrates. More than twice as many L. lactis cells expressing SspA bound to immobilized salivary agglutinin glycoprotein (SAG) as did L. lactis cells expressing SspB. In contrast, lactococci expressing SspB adhered twice as well as lactococci producing SspA to collagen type I and to Candida albicans . The binding of A. naeslundii to lactococci was only weakly enhanced by surface expression of Ssp polypeptides. L. lactis (pTREX1-sspB) cells bound in greater numbers to SAG than did Enterococcus faecalis JH2-2 cells expressing SspB from pAM401EB-5. The results suggest that SspA and SspB have markedly different binding affinities for their oral substrates and thus may function to promote site diversity in colonization by S. gordonii .

Whole cells of Lactobacillus delbrueckii subsp. bulgaricus CNRZ 397 (Lb. bulgaricus CNRZ 397) are able to hydrolyse α- and β-caseins. We have isolated a mutant of Lb. bulgaricus altered for growth in milk and unable to hydrolyse α- or β-casein. Normal growth was restored by adding amino acids or tryptone to milk. No significant difference between the peptidase activities of parent and mutant strains was observed. The cell surface caseinolytic activities of three lactobacilli species and Lactococcus lactis subsp. lactis (Lc. lactis) were compared. As expected, the characteristics of the cell surface proteinase activity of Lb. casei were similar to those of Lc. lactis. We showed that the cleavage specificities of the cell surface proteinase activities from lactobacilli were species-dependent and at least three types of activity were distinguished. The regulation of the biosynthesis of cell surface proteinase activities was medium-dependent and different within the Lactobacillus genus and even within the Lb. delbrueckii species. In contrast to Lb. bulgaricus, the cell surface proteinase activity of Lb. lactis was totally inhibited in a medium rich in peptides or amino acids. In contrast, the cell surface of Lb. helveticus probably displayed two proteinases with different cleavage specificities and with a biosynthesis regulation sensitive to different medium components.

Aims Escherichia coli is able to reduce azo compounds such as methyl red (MR) and nitro compounds such as 7-nitrocoumarin-3-carboxylic acid (7NCCA). The aim of this study was to clarify the specificity of the major E. coli reductases. Methods and Results Enzymatic assays with pure enzymes obtained after cloning, overproduction and purification under native or denaturing conditions were performed on three enzymes: AzoR, NfsA and NfsB. Their dependence on putative cofactors such as flavin mononucleotide (FMN), NADH and NADPH was studied as well as the reductase capacity of E. coli mutants depleted for one, two or three of the corresponding genes. Conclusions AzoR was able to reduce both MR and 7NCCA, whereas NfsA and NfsB could only reduce the nitro compound. AzoR and NfsB were strictly FMN dependent in contrast to NfsA. At a low oxygen concentration, the three proteins were not mandatory for azo reduction and nitro reduction, but in optimal aerobic conditions, azoR was essential for MR reduction, and an nfsA/nfsB combination was important for 7NCCA reduction. Overexpression of azoR gene was able to compensate for the loss of nfsA and nfsB under aerobic conditions. Significance and Impact of Study These data provide new insights into the substrate specificity of major E. coli nitroreductases and demonstrate that oxygen is an important parameter to take into account in studies of nitroreductase activity.

This thesis is about the study of the lamellar oxides NaxVO2. Several phases have been obtained with different stacking of the [VO2] sheets: O3-NaVO2, P’3-Na0.56VO2 and P2-Na0.73VO2. These three materials have been the subject of an electrochemical study in sodium batteries coupled with in situ X-ray diffraction in order to understand the structural transitions taking place as a function of the composition. A superstructure appears at Na1/2VO2 for the three stackings. This composition has been obtained by potentiostatic synthesis. The structural characterization shows that at this composition the three polytypes present a Na+/vacancy ordering and suggests the presence of clusters of vanadium ions. An unusual behaviour of the physical properties is observed as a result of this peculiar organization. This work demonstrates the important electronic correlations in this family of materials and paves the path to future studies in solid-state chemistry and physics.; Cette thèse a pour objet l'étude des oxydes lamellaires NaxVO2. Différentes phases ont été obtenues qui diffèrent dans l'empilement des feuillets [VO2] : O3-NaVO2, P'3-Na0.56VO2 et P2-Na0.73VO2. Ces trois matériaux ont fait l'objet d'une étude électrochimique en batterie sodium couplée à la diffraction des rayons X in situ afin de comprendre les transitions structurales qui se produisent en fonction de la composition. Une superstructure apparait à Na1/2VO2 pour les trois types d'empilements. Cette composition a pu être obtenue par synthèse potentiostatique. La caractérisation structurale montre qu’à cette composition les trois polytypes présentent une mise en ordre Na+/lacune et suggère la présence de clusters d'ions vanadium. De cette organisation particulière résulte un comportement inhabituel des propriétés physiques. Ce travail démontre les corrélations électroniques importantes dans cette famille de matériaux et ouvre la voie à de futures études en physique et chimie du solide.

Proline iminopeptidase (PepIP) is a major peptidase in Lactobacillus delbrueckii subsp. bularicus CNRZ397, encoded by the pepIP gene. Amplification and expression of this gene in Escherichia coli K12 resulted in a very high level of enzyme production. Moreover, export into the E. coli periplasm of 45% of PepIP activity allowed us to purify the enzyme easily by a single ion-exchange chromatography step. PepIP is a trimer of Mr 100000 , composed of three identical subunits. In the presence of 0.1% BSA, PepIP activity was optimal at pH 6-7 and stable at temperatures below 40 degrees C. The enzyme was strongly inhibited by 3,4-dichloroisocoumarin, a serine protease inhibitor, by bestatin and by heavy metal ions. It was also inactivated by p-chloromercuribenzoate, but was reactivated by adding dithiothreitol. PepIP is characterized by a high specificity towards di- or tripeptides with proline at the NH2-terminal position, but is not able to hydrolyse longer peptides, or peptides with hydroxyproline at the NH2-end. The NH2-terminal amino acid sequence of the purified PepIP corresponds to the amino acid sequence deduced from the nucleotide sequence of the pepIP gene.

The proline iminopeptidase (PepIP) of Lactobacillus delbrueckii subsp. bulgaricus is a major peptidase located in the cell envelope. Its structural gene (pepIP) has been cloned into pUC18 and expressed at a very high level in Escherichia coli to give a PepIP activity 15,000-fold higher than that found in L. delbrueckii subsp. bulgaricus. The nucleotide sequence of the pepIP gene revealed an open reading frame of 295 codons encoding a protein with a predicted M(r) of 33,006, which is consistent with the apparent size of the gene product. The amino acid sequence of PepIP shows significant homology with those of other hydrolases involved in the degradation of cyclic compounds. In particular, there is a region which includes an identified catalytic site containing a serine residue and a motif specific for the active sites of prolyloligopeptidases (Gly-X-Ser-X-Gly-Gly). The PepIP opens a new way for supplying cells with proline using the peptides resulting from the proteolytic degradation of caseins.

Legionella pneumophila is the etiological agent of Legionnaires' disease. Crucial to the pathogenesis of this intracellular pathogen is its ability to subvert host cell defenses, permitting intracellular replication in specialized vacuoles within host cells. The Dot/Icm type IV secretion system (T4SS), which translocates a large number of bacterial effectors into host cell, is absolutely required for rerouting the Legionella phagosome. Many Legionella effectors display distinctive eukaryotic domains, among which are protein kinase domains. In silico analysis and in vitro phosphorylation assays identified five functional protein kinases, LegK1 to LegK5, encoded by the epidemic L. pneumophila Lens strain. Except for LegK5, the Legionella protein kinases are all T4SS effectors. LegK2 plays a key role in bacterial virulence, as demonstrated by gene inactivation. The legK2 mutant containing vacuoles displays less-efficient recruitment of endoplasmic reticulum markers, which results in delayed intracellular replication. Considering that a kinase-dead substitution mutant of legK2 exhibits the same virulence defects, we highlight here a new molecular mechanism, namely, protein phosphorylation, developed by L. pneumophila to establish a replicative niche and evade host cell defenses.

A significant part of bacterial two-component system response regulators contains effector domains predicted to be involved in metabolism of bis-(3'-5')-cyclic dimeric guanosine monophosphate (c-di-GMP), a second messenger that plays a key role in many physiological processes. The intracellular level of c-di-GMP is controlled by diguanylate cyclase and phosphodiesterases activities associated with GGDEF and EAL domains, respectively. The Legionella pneumophila Lens genome displays 22 GGDEF/EAL domain-encoding genes. One of them, lpl0329, encodes a protein containing a two-component system receiver domain and both GGDEF and EAL domains. Here, we demonstrated that the GGDEF and EAL domains of Lpl0329 are both functional and lead to simultaneous synthesis and hydrolysis of c-di-GMP. Moreover, these two opposite activities are finely regulated by Lpl0329 phosphorylation due to the atypical histidine kinase Lpl0330. Indeed, Lpl0330 was found to autophosphorylate on a histidine residue in an atypical H box, which is conserved in various bacteria species and thus defines a new histidine kinase subfamily. Lpl0330 also catalyzes the phosphotransferase to Lpl0329, which results in a diguanylate cyclase activity decrease whereas phosphodiesterase activity remains efficient. Altogether, these data present (i) a new histidine kinase subfamily based on the conservation of an original H box that we named HGN H box, and (ii) the first example of a bifunctional enzyme that modulates synthesis and turnover of c-di-GMP in response to phosphorylation of its receiver domain.

Lactococcus lactis is known to take up extracellular peptides via at least three distinct peptide transporters. The well-described oligopeptide transporter Opp alone is able to ensure the growth of L. lactis in milk, while the di- and tripeptide transporter DtpT is involved in a peptide-dependent signalling mechanism. The oligopeptide Opt transporter displays two peptide-binding proteins, OptA and OptS. We previously demonstrated that OptA-dependent transport is dedicated to nutritional peptides, as an optABCDF mutant (of a strain devoid of Opp) has an impaired capacity to grow in milk. Using isogenic peptide transport mutants, this study shows that biosynthesis of the Opt transporter is much less sensitive to downregulation that is dependent on extracellular peptides taken up by DtpT than is Opp biosynthesis; this peptide-dependent regulation relies on the transcriptional repressor CodY. We demonstrate the dual function of the Opt system; while OptA contributes to the bacterial nutrition during growth in milk, OptS is involved in the transport of signalling peptides derived from milk and controlling opp expression. So, these results shed new light on the peptide-dependent regulation relying on two peptide transporters with different specificities: DtpT and Opt (via OptS).

Pneumonia associated with Iegionnaires's disease is initiated in humans after inhalation of contaminated aerosols. In the environment, Legionella pneumophila is thought to survive and multiply as an intracellular parasite within free-living amoeba. In the genome of L. pneumophila Lens, we identified a unique gene, tolC, encoding a protein that is highly homologous to the outer membrane protein TolC of Escherichia coli. Deletion of tolC by allelic exchange in L. pneumophila caused increased sensitivity to various drugs. The complementation of the tolC mutation in trans restored drug resistance, indicating that TolC is involved in multi-drug efflux machinery. In addition, deletion of tolC caused a significant attenuation of virulence towards both amoebae and macrophages. Thus, the TolC protein appears to play a crucial role in virulence which could be mediated by its involvement in efflux pump mechanisms. These findings will be helpful in unraveling the pathogenic mechanisms of L. pneumophila as well as in developing new therapeutic agents affecting the efflux of toxic compounds.

Whole cells of Lactobacillus delbrueckii subsp. bulgaricus CNRZ 397 were able to hydrolyse alpha- and beta-caseins. Irrespective of the growth medium used, milk or De Man-Rogosa-Sharpe (MRS) broth, identical patterns of alpha- and beta-casein hydrolytic products, respectively, were visualized by sodium dodecyl sulphate-polyacrylamide gel electrophoresis. A soluble proteinase present in cell-wall extracts was active on caseins and displayed the same hydrolytic patterns as whole cells. It was purified from cell-wall extract to homogeneity by ultrafiltration and ion exchange chromatography. The enzyme is a monomer with a molecular mass of 170 kDa, an optimum temperature of 42 degrees C and an optimum pH of 5.5. It was strongly activated by dithiothreitol and partially inhibited by E-64. These properties indicate that cysteine residues play an important role in the enzyme mechanism. The purified proteinase was not able to hydrolyse di- or tripeptides.

Background Reversible phosphorylation events within a polymerisation complex have been proposed to modulate capsular polysaccharide synthesis in Streptococcus pneumoniae. Similar phosphatase and kinase genes are present in the exopolysaccharide (EPS) biosynthesis loci of numerous lactic acid bacteria genomes. Results The protein sequence deduced from the wzb gene in Lactobacillus rhamnosus ATCC 9595 reveals four motifs of the polymerase and histidinol phosphatase (PHP) superfamily of prokaryotic O-phosphatases. Native and modified His-tag fusion Wzb proteins were purified from Escherichia coli cultures. Extracts showed phosphatase activity towards tyrosine-containing peptides. The purified fusion protein Wzb was active on p-nitrophenyl-phosphate (pNPP), with an optimal activity in presence of bovine serum albumin (BSA 1%) at pH 7.3 and a temperature of 75°C. At 50°C, residual activity decreased to 10 %. Copper ions were essential for phosphatase activity, which was significantly increased by addition of cobalt. Mutated fusion Wzb proteins exhibited reduced phosphatase activity on p-nitrophenyl-phosphate. However, one variant (C6S) showed close to 20% increase in phosphatase activity. Conclusion These characteristics reveal significant differences with the manganese-dependent CpsB protein tyrosine phosphatase described for Streptococcus pneumoniae as well as with the polysaccharide-related phosphatases of Gram negative bacteria.

The exopolysaccharide (EPS) biosynthesis gene clusters of four Lactobacillus rhamnosus strains consist of chromosomal DNA regions of 18·5 kb encoding 17 ORFs that are highly similar among the strains. However, under identical conditions, EPS production varies considerably among these strains, from 61 to 1611 mg l−1. Fifteen genes are co-transcribed starting from the first promoter upstream of wzd. Nevertheless, five transcription start sites were identified by 5′-RACE PCR analysis, and these were associated with promoter sequences upstream of wzd, rmlA, welE, wzr and wzb. Six potential glycosyltransferase genes were identified that account for the assembly of the heptasaccharide repeat unit containing an unusually high proportion of rhamnose. Four genes involved in the biosynthesis of the sugar nucleotide precursor dTDP-l-rhamnose were identified in the EPS biosynthesis locus, which is unusual for lactic acid bacteria. These four genes are expressed from their own promoter (P2), as well as co-transcribed with the upstream EPS genes, resulting in coordinated production of the rhamnose precursor with the enzymes involved in EPS biosynthesis. This is believed to be the first report demonstrating that the sequence, original organization and transcription of genes encoding EPS production are highly similar among four strains of Lb. rhamnosus, and do not vary with the amount of EPS produced.

The specific oligopeptide transport system Opp is essential for growth of Lactococcus lactis in milk. We examined the biodiversity of oligopeptide transport specificity in the L. lactis species. Six strains were tested for (i) consumption of peptides during growth in a chemically defined medium and (ii) their ability to transport these peptides. Each strain demonstrated some specific preferences for peptide utilization, which matched the specificity of peptide transport. Sequencing of the binding protein OppA in some strains revealed minor differences at the amino acid level. The differences in specificity were used as a tool to unravel the role of the binding protein in transport specificity. The genes encoding OppA in four strains were cloned and expressed in L. lactis MG1363 deleted for its oppA gene. The substrate specificity of these engineered strains was found to be similar to that of the L. lactis MG1363 parental strain, whichever oppA gene was expressed. In situ binding experiments demonstrated the ability of OppA to interact with non-transported peptides. Taken together, these results provide evidence for a new concept. Despite that fact that OppA is essential for peptide transport, it is not the (main) determinant of peptide transport specificity in L. lactis.

The specific oligopeptide transport system Opp is essential for growth of Lactococcus lactis in milk. We examined the biodiversity of oligopeptide transport specificity in the L. lactis species. Six strains were tested for (i) consumption of peptides during growth in a chemically defined medium and (ii) their ability to transport these peptides. Each strain demonstrated some specific preferences for peptide utilization, which matched the specificity of peptide transport. Sequencing of the binding protein OppA in some strains revealed minor differences at the amino acid level. The differences in specificity were used as a tool to unravel the role of the binding protein in transport specificity. The genes encoding OppA in four strains were cloned and expressed in L. lactis MG1363 deleted for its oppA gene. The substrate specificity of these engineered strains was found to be similar to that of the L. lactis MG1363 parental strain, whichever oppA gene was expressed. In situ binding experiments demonstrated the ability of OppA to interact with non-transported peptides. Taken together, these results provide evidence for a new concept. Despite that fact that OppA is essential for peptide transport, it is not the (main) determinant of peptide transport specificity in L. lactis.

The patC gene encoding the cystathionine beta-lyase (CBL) of Lactobacillus delbrueckii subsp. bulgaricus NCDO 1489 was cloned and expressed in Escherichia coli. Overexpression of CBL complemented the methionine auxotrophy of an E. coli metC mutant, demonstrating in vivo that this enzyme functions as a CBL. However, PatC is distinguishable from the MetC CBLs by a low identity in amino acid sequence, a sensitivity to iodoacetic acid, greater thermostability and a lower substrate affinity. Homologues of patC were detected in the 13 Lb. delbrueckii strains studied, but only seven of them showed CBL activity. In constrast to CBL(+) strains, all CBL-deficient strains analysed were auxotrophic for methionine. This supports the hypothesis that CBLs from lactobacilli are probably involved in methionine biosynthesis. Moreover, the results of this study suggest that post-transcriptional mechanisms account for the differences in CBL activities observed between strains of Lb. delbrueckii.

In order to develop a new system for the analysis of capsular biosynthetic pathways we have explored the possibility of expressing type 3 capsular polysaccharide (CPS) from the pathogen Streptococcus pneumoniae in Lactococcus lactis , an unencapsulated lactic acid bacterium being developed as a vaccine delivery vehicle for mucosal immunization. Only three of the four type 3 CPS biosynthesis genes were found to be necessary for the abundant formation (120 mg liter −1 ) of an extracellular type 3 CPS in L. lactis , implying a role for the type 3-specific synthase in the extracellular transport of the CPS or implying the existence of an alternative export system in L. lactis . The authenticity of the expressed heterologous polysaccharide was established by chemical and immunological analyses. Proton and carbon nuclear magnetic resonance spectroscopy of CPSs purified from L. lactis and S. pneumoniae showed that the two CPS structures were identical. When mice were immunized intraperitoneally with 3.5 × 10 6 CFU of live recombinant lactococci expressing a total of approximately 0.5 μg of type 3 CPS, the immune responses elicited appeared identical to those observed in mice inoculated with 0.5 μg of type 3 CPS purified from S. pneumoniae . These findings show that L. lactis is a useful host in which to study the role and function of genes involved in the production of bacterial capsules. Additionally, L. lactis shows potential as a host for the safe production of capsule antigens and as a vaccine delivery vehicle for polysaccharide antigens.

Investigation of the chromosomal region downstream of the lacZ gene from Lactobacillus delbrueckii subsp. bulgaricus revealed the presence of a gene (prtB) encoding a proteinase of 1,946 residues with a predicted molecular mass of 212 kDa. The deduced amino acid sequence showed that PrtB proteinase displays significant homology with the N termini and catalytic domains of lactococcal PrtP cell surface proteinases and is probably synthesized as a preproprotein. However, the presence of a cysteine near the histidine of the PrtB active site suggests that PrtB belongs to the subfamily of cysteine subtilisins. The C-terminal region strongly differs from those of PrtP proteinases by having a high lysine content, an imperfect duplication of 41 residues, and a degenerated sequence compared with the consensus sequence for proteins anchoring in the cell walls of gram-positive bacteria. Finally, the product of the truncated prtM-like gene located immediately upstream of the prtB gene seems too short to be involved in the maturation of PrtB.

Summary: Lactobacillus helveticus ITGL1 is able to hydrolyse many amino-acyl and dipeptidyl-p-nitroanilides. Analysis of heat inactivation kinetics, metal ion and protease inhibitor effects, and the subcellular location of aminopeptidase activities in both the parental strain and mutants deficient in lysyl-p-nitroanilide hydrolysis, led to the characterization of two cell-wall-associated aminopeptidases. APII and APIV. APII, which catalysed L-lysine p-nitroanilide hydrolysis, was purified about 28-fold to homogeneity from cell-wall extracts of L. helveticus ITGL1 and characterized. The purified enzyme appeared to be monomeric, with a molecular mass of 97 kDa. Aminopeptidase activity was greatest at pH 6.5 and 50 °C. APII was completely inhibited by bestatin, chelating agents such as EDTA or 1,10-phenanthroline and the divalent cations Zn2+ and Cu2+. The activity of the EDTA-treated enzyme was restored by Co2+, Ca2+ or Mn2+. Although APII was able to degrade several dipeptides and tripeptides with hydrophobic N-terminal amino acid (Leu, Ala), it was inactive on peptides containing Pro or Gly, and may thus contribute to the development of cheese flavour by processing bitter peptides.

This thesis is about the study of the lamellar oxides NaxVO2. Several phases have been obtained with different stacking of the [VO2] sheets: O3-NaVO2, P’3-Na0.56VO2 and P2-Na0.73VO2. These three materials have been the subject of an electrochemical study in sodium batteries coupled with in situ X-ray diffraction in order to understand the structural transitions taking place as a function of the composition. A superstructure appears at Na1/2VO2 for the three stackings. This composition has been obtained by potentiostatic synthesis. The structural characterization shows that at this composition the three polytypes present a Na+/vacancy ordering and suggests the presence of clusters of vanadium ions. An unusual behaviour of the physical properties is observed as a result of this peculiar organization. This work demonstrates the important electronic correlations in this family of materials and paves the path to future studies in solid-state chemistry and physics., Cette thèse a pour objet l'étude des oxydes lamellaires NaxVO2. Différentes phases ont été obtenues qui diffèrent dans l'empilement des feuillets [VO2] : O3-NaVO2, P'3-Na0.56VO2 et P2-Na0.73VO2. Ces trois matériaux ont fait l'objet d'une étude électrochimique en batterie sodium couplée à la diffraction des rayons X in situ afin de comprendre les transitions structurales qui se produisent en fonction de la composition. Une superstructure apparait à Na1/2VO2 pour les trois types d'empilements. Cette composition a pu être obtenue par synthèse potentiostatique. La caractérisation structurale montre qu’à cette composition les trois polytypes présentent une mise en ordre Na+/lacune et suggère la présence de clusters d'ions vanadium. De cette organisation particulière résulte un comportement inhabituel des propriétés physiques. Ce travail démontre les corrélations électroniques importantes dans cette famille de matériaux et ouvre la voie à de futures études en physique et chimie du solide.

Background Several cases of legionellosis have been diagnosed in the same French thermal spa in 1986, 1994 and 1997. L. pneumophila serogroup 1 (Lp1) strains have been isolated from several patients, but the source of contamination was not identified despite the presence of different Lp1 in water samples of the three natural springs feeding the spa at this period. Results Our strategy was to investigate L. pneumophila (Lp) strains from natural biofilms developed in a sulphur-rich warm spring of this contaminated site. Biofilm analysis revealed the presence of three Lp serogroups (Lp1, Lp10 and Lp12). Surprisingly, Lp10 and Lp12 were not reported in the previous described studies from water samples. Besides, the new seven Lp1 we isolated exhibit a high molecular diversity and have been differentiated in five classes according to their DNA genome patterns obtained by PFGE and mip sequences. It must be noted that these DNA patterns are original and unknown in databases. Interestingly, the 27 Lp environmental strains we isolated display a higher cytotoxicity and virulence towards the amoeba Acanthamoeba castellanii than those of known Lp1 epidemic strains. Conclusion The characteristics of Legionella pneumophila Lp1 strains isolated from the warm spring are in agreement with their presence in biofilms and their probable long-term persistence in this ecosystem.

Background One proposed mechanism for assembly of secreted heteropolysaccharides by many Gram positive bacteria relies on the coordinated action of a polymerization complex through reversible phosphorylation events. The role of the tyrosine protein kinase transmembrane modulator is, however, not well understood. Results The protein sequences deduced from the wzb, wzd and wze genes from Lactobacillus rhamnosus ATCC 9595 and RW-9595 M contain motifs also found in corresponding proteins CpsB, CpsC and CpsD from Streptococcus pneumoniae D39 (serotype 2). Use of an anti-phosphotyrosine antibody demonstrated that both Wzd and Wze can be found in tyrosine phosphorylated form. When tyrosine 266 was mutated to phenylalanine, WzdY266F showed slightly less phosphorylated protein than those produced by using eight other tyrosine mutated Wzd genes, when expressed along with Wze and Wzb in Lactococcus lactis subsp. cremoris MG1363. In order to demonstrate the importance of ATP for the interactions among these proteins, native and fusion Wzb, Wzd and Wze proteins were expressed and purified from Escherichia coli cultures. The modulator protein, Wzd, binds with the phosphotyrosine kinase Wze, irrespective of its phosphorylation status. However, Wze attained a higher phosphorylation level after interacting with phosphorylated Wzd in the presence of 10 mM ATP. This highly phosphorylated Wze did not remain in close association with phosphorylated Wzd. Conclusion The Wze tyrosine kinase protein of Lactobacillus rhamnosus thus carries out tyrosine phosphorylation of Wzd in addition to auto- and trans- phosphorylation of the kinase itself. Electronic supplementary material The online version of this article (doi:10.1186/s12866-015-0371-2) contains supplementary material, which is available to authorized users.

Legionella pneumophila is the causative agent of a form of pneumonia called legionellosis or Legionnaires’ disease. Between 2012 and 2015, the reported European cases of legionellosis increased from 5,848 to 7,069 cases per year where France, Germany, Italy and Spain accounted for 69% of the reported cases. Worryingly, the case fatality of incidents was 8.2% making this disease a considerable health concern. One virulence factor produced by this bacterium is a large protein (~700 kDa) belonging to the RTX (Repeats in ToXin) family called RtxA secreted by the type 1 secretion system. The hereby work reveals that, in vitro, LapG periplasmic protease cleaves RtxA N-terminus in the middle of a di-alanine motif (a.a. 108-109). We also show using lapG and lapD mutant strains, that RtxA release is controlled by these two proteins similar to Pseudomonas fluorescenes LapA. We observed that a strain lacking LapG protease maintains RtxA on the cell surface, while a strain lacking LapD does not exhibit cell surface RtxA. Interestingly, we identified the presence of homologous potential T1SS/LapDG systems in many Legionella species and other Gammaproteobacteria. Regarding L. pneumophila virulence, our work showed that mutants for L. pneumophila T1SS (lssBD/tolC) were more disruptive to its virulence than lapG/lapD mutants. We also hypothesize, by challenging infection, that L. pneumophila might be actively targeting its host via RtxA. Additionally, by observing rtxA mutants as well as detecting RtxA on host surface briefly after inoculation and attenuating virulence by using anti RtxA antibodies, we assume an important but not limiting role for this protein in the infection process; Legionella pneumophila est responsable d'une forme de pneumonie, la legionellose ou de maladie du légionnaire. Entre 2012 et 2015, les cas annuels ont grimpé de 5848 à 7069 en Europe, la France, l’Allemagne, l’Italie et l’Espagne correspondant à 69% du total. De façon inquiétante, la mortalité était de 8,2% faisant de cette maladie un réel enjeu de santé publique. Un facteur de virulence produit par cette bactérie est la protéine RtxA (~700 kDa) de la famille des protéines RTX (Repeats in ToXin) sécrétée via un système de sécrétion de type 1. Dans ce travail, in vitro, la protéase périplasmique LapG clive la partie N-terminale de RtxA au sein d'un motif di-alanine (position 108-109). La construction de mutants déficients dans l’expression de LapG et LapD a révélé une localisation de RtxA sous le contrôle de ces deux protéines, mécanisme semblable au modèle LapA décrit chez P. fluorescens. Un mutant lapG maintient RtxA à la surface de cellules, à l’opposé d’un mutant ?lapD. Nous avons identifié des systèmes homologues T1SS/LapDG dans de nombreuses espèces Legionella ainsi que d’autres gammaproteobactéries. Concernant la virulence de L. pneumophila, les mutants déficients pour le T1SS (lssBD/tolC) étaient plus altérés dans leur virulence que des mutants du système LapDG. Nous avons également montré, grâce à des expériences de compétition, que L. pneumophila semble cibler les cellules hôtes via la protéine RtxA. L’utilisation d’anticorps spécifiques anti-RtxA nous a permis de détecter RtxA à la surface des cellules hôtes, mais aussi de réduire de la virulence de L. pneumophila, suggérant un rôle important de RtxA lors du processus d’infection, bien que non limitant

Legionella pneumophila is the causative agent of a form of pneumonia called legionellosis or Legionnaires’ disease. Between 2012 and 2015, the reported European cases of legionellosis increased from 5,848 to 7,069 cases per year where France, Germany, Italy and Spain accounted for 69% of the reported cases. Worryingly, the case fatality of incidents was 8.2% making this disease a considerable health concern. One virulence factor produced by this bacterium is a large protein (~700 kDa) belonging to the RTX (Repeats in ToXin) family called RtxA secreted by the type 1 secretion system. The hereby work reveals that, in vitro, LapG periplasmic protease cleaves RtxA N-terminus in the middle of a di-alanine motif (a.a. 108-109). We also show using lapG and lapD mutant strains, that RtxA release is controlled by these two proteins similar to Pseudomonas fluorescenes LapA. We observed that a strain lacking LapG protease maintains RtxA on the cell surface, while a strain lacking LapD does not exhibit cell surface RtxA. Interestingly, we identified the presence of homologous potential T1SS/LapDG systems in many Legionella species and other Gammaproteobacteria. Regarding L. pneumophila virulence, our work showed that mutants for L. pneumophila T1SS (lssBD/tolC) were more disruptive to its virulence than lapG/lapD mutants. We also hypothesize, by challenging infection, that L. pneumophila might be actively targeting its host via RtxA. Additionally, by observing rtxA mutants as well as detecting RtxA on host surface briefly after inoculation and attenuating virulence by using anti RtxA antibodies, we assume an important but not limiting role for this protein in the infection process, Legionella pneumophila est responsable d'une forme de pneumonie, la legionellose ou de maladie du légionnaire. Entre 2012 et 2015, les cas annuels ont grimpé de 5848 à 7069 en Europe, la France, l’Allemagne, l’Italie et l’Espagne correspondant à 69% du total. De façon inquiétante, la mortalité était de 8,2% faisant de cette maladie un réel enjeu de santé publique. Un facteur de virulence produit par cette bactérie est la protéine RtxA (~700 kDa) de la famille des protéines RTX (Repeats in ToXin) sécrétée via un système de sécrétion de type 1. Dans ce travail, in vitro, la protéase périplasmique LapG clive la partie N-terminale de RtxA au sein d'un motif di-alanine (position 108-109). La construction de mutants déficients dans l’expression de LapG et LapD a révélé une localisation de RtxA sous le contrôle de ces deux protéines, mécanisme semblable au modèle LapA décrit chez P. fluorescens. Un mutant lapG maintient RtxA à la surface de cellules, à l’opposé d’un mutant ?lapD. Nous avons identifié des systèmes homologues T1SS/LapDG dans de nombreuses espèces Legionella ainsi que d’autres gammaproteobactéries. Concernant la virulence de L. pneumophila, les mutants déficients pour le T1SS (lssBD/tolC) étaient plus altérés dans leur virulence que des mutants du système LapDG. Nous avons également montré, grâce à des expériences de compétition, que L. pneumophila semble cibler les cellules hôtes via la protéine RtxA. L’utilisation d’anticorps spécifiques anti-RtxA nous a permis de détecter RtxA à la surface des cellules hôtes, mais aussi de réduire de la virulence de L. pneumophila, suggérant un rôle important de RtxA lors du processus d’infection, bien que non limitant

L'implication des tours aéro-réfrigérantes dites « ouvertes », dans les cas de légionellose, demeure à l'heure actuel un problème de santé public malgré la multitude de composés biocides disponibles qui, parfois, sont écotoxiques et appliqués à de forte concentrations. L'efficacité de la majorité de ces biocides est étudiée vis-à-vis des formes planctoniques des microorganismes. Cette étude s'intéresse à la mise au point de deux procédés de traitement du risque Legionella pneumophila : H2O2/UV et ClO2, avec la prise en compte particulière des communautés microbiennes fixées et notamment des protozoaires qui constituent l'hôte naturel de cette bactérie. La démarche expérimentale adoptée pour l'étude de l'efficacité de ces traitements, s'est appuyée sur des biofilms environnementaux naturellement contaminés par des légionelles et issus d'une source thermale. La caractérisation des légionelles isolées des biofilms de cette source montre le maintien du sérogroupe 1 de L. pneumophila et l'apparition de deux autres sérogroupes non reportés dans des études précédentes (sg10 et sg12), avec toutefois une prédominance du sérogroupe 12. Quel que soit le sérogroupe, ces souches environnementales se sont avérées plus virulentes vis-à-vis de l'amibe Acantamoeba castellanii, que les souches cliniques de Lp1 répertoriées. A l'état planctonique elles se sont également avérées très sensibles aux traitements H2O2/UV et UV seul. A l'échelle expérimentale, les deux traitements, H2O2/UV et ClO2, montrent une performance élevée vis-à-vis des biofilms. L'étude a particulièrement mis en évidence le rôle du facteur trophique et de l'adaptation des bactéries au stress oxydatif dans la performance des traitements mais aussi dans l'apparition de la reviviscence. L'application des traitements à des installations en vraie grandeur a permis de conforter les résultats expérimentaux et de mettre l'accent, dans le contexte des sites étudiés, sur les limites de leur efficacité et sur la nécessité d'ajustements des doses appliquées (concentrations des biocides, flux d'irradiation UV, mode d'application) aux particularités des contextes industriels., Cooling towers are considered as one of the major sources of Legionella pneumophila, the causal agent of Legionnaires' disease. Despite the high number of commercial disinfectants dedicated to it, the Legionella threat is still rising especially in connection with cooling towers. The efficacy of most disinfectants is demonstrated on planktonic bacteria while very few studies have been devoted to their effects on biofilms. The main objective of the study was to optimize two treatments dedicated to the control of biofilms in cooling towers, H2O2/UV and ClO2, so as to reduce the risk associated to Legionella pneumophila while minimizing environmental damages. Their efficacy was studied against environmental biofilms developed in a hot sulphur spring where presence of L. pneumophila is permanent. Their analysis revealed the occurrence of Lp serogroups 1 (Lp1) and of two serogroups not reported in previous studies that were oriented toward water samples, though (Lp10 and Lp12). The environmental strains we isolated display a higher cytotoxicity and virulence towards the amoeba Acantamoeba castellanii than those of known Lp1 epidemic strains and a higher sensitivity to UV and H2O2/UV. In the experimental part of the study, ClO2 and H2O2/UV display a high efficacy against biofilms. Furthermore the study showed the role of trophic parameters and of bacterial adaptation to oxidative stress on the performance of the treatments but also on biofilms regrowth. The experiments performed at the industrial scale corroborate the results gained at the pilot scale and focus on the relationships between the dose and the effectiveness of each treatment. Our results suggest the possibility to apply the process to an industrial scale with necessary adjustments about doses and injection modalities to the context of the considered sites.

Reductase activities are widespread among microorganisms. Among these activities, it is possible to distinguish different families based on reduced substrates such as azoreductases that catalyze the reduction of “azo” bounds (N=N) and nitroreductases that catalyze the reduction of nitro group (NO2). This work aims to study the distribution of reductase activities such as nitroreductase and azoreductase in microorganisms using fluorescent substrates. This work aims to evaluate the appropriateness of using these enzyme activities in diagnostic tests for detection or identification of microorganisms sought in a clinical or industrial context. A thorough study of these enzyme activities was performed on two bacterial species: Escherichia coli and Enterococcus faecalis. The study of azoreductase activity focused on a single enzyme (AzoR) in E. coli and 2 enzymes (AzoA and EF0404) in E. faecalis. Concerning nitroreductase activity, three enzymes (NfsA, AzoR and NfsB) have been identified in E. coli while 5 enzymes (AzoA, EF0404, EF1181, EF0648 and EF0655) have been identified as nitroreductases in E. faecalis. The in vivo study in E. coli has highlighted the essential role of AzoR in aerobic azoreductase activity whereas in anaerobic conditions the protein AzoR is involved, but an independent way of the enzyme AzoR, not specifically characterized to date, takes over. The nitroreductase activity of E. coli is due mainly to the proteins NfsA et NfsB, Les activités réductases sont des activités enzymatiques largement répandues au sein des microorganismes. Parmi ces activités, il est possible de distinguer différentes familles en fonction des substrats réduits comme les azoréductases qui catalysent la réduction des ponts « azo » (N=N) et les nitroréductases qui catalysent la réduction de la fonction nitro (NO2). Ce travail vise à étudier la répartition des activités réductases telles que nitroréductase et azoréductase au sein des microorganismes à laide de substrats devenant fluorescent une fois réduits. Ce travail a pour but dévaluer la pertinence dutilisation de ces activités enzymatiques dans des tests diagnostic de détection voire didentification des microorganismes recherchés dans un cadre clinique ou industriel. Une étude approfondie de ces activités enzymatiques a été faite sur deux espèces bactériennes : Escherichia coli et Enterococcus faecalis. Létude de lactivité azoréductase sest portée sur une seule enzyme (AzoR) chez E. coli et 2 enzymes (AzoA et EF0404) chez E. Faecalis. Concernant lactivité nitroréductase, 3 enzymes (NfsA, NfsB et AzoR) ont été mises en évidence chez E. coli tandis que 5 enzymes (AzoA, EF0404, EF1181, EF0648 et EF0655) ont été identifiées comme nitroréductases chez E. faecalis. Létude in vivo menée chez E. coli a mis en évidence le rôle indispensable dAzoR dans lactivité azoréductase aérobique alors quen conditions danaérobie la protéine AzoR est impliquée, mais une voie non précisément caractérisée à ce jour, indépendante de lenzyme AzoR, prend le relais. Lactivité nitroréductase dE. coli est due majoritairement aux enzymes NfsA et NfsB