158 results on '"Crosson S"'
Search Results
2. Hepatic expression of CCAAT/enhancer binding protein α: hormonal and metabolic regulation in rats
- Author
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Crosson, S. M., Davies, G. F., and Roesler, W. J.
- Published
- 1997
- Full Text
- View/download PDF
3. Brucella periplasmic binding protein YehZ
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Herrou, J., primary and Crosson, S., additional
- Published
- 2017
- Full Text
- View/download PDF
4. B. fragilis cysteine protease
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Choi, V.M., primary, Herrou, J., additional, Hecht, A.L., additional, Turner, J.R., additional, Crosson, S., additional, and Bubeck Wardenburg, J., additional
- Published
- 2016
- Full Text
- View/download PDF
5. Structure of B. abortus WrbA-related protein A (apo)
- Author
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Herrou, J., primary, Czyz, D., additional, Willett, J.W., additional, Kim, H.S., additional, Kim, Y., additional, and Crosson, S., additional
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- 2016
- Full Text
- View/download PDF
6. The primary photophysics of the Avena sativa phototropin 1 LOV2 domain observed with time-resolved emission spectroscopy
- Author
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van Stokkum, I.H.M., Gauden, M., Crosson, S., van Grondelle, R., Moffat, K., Kennis, J.T.M., Biophysics Photosynthesis/Energy, and LaserLaB - Energy
- Subjects
animal structures ,SDG 7 - Affordable and Clean Energy - Abstract
The phototropins are blue-light receptors that base their light-dependent action on the reversible formation of a covalent bond between a flavin mononucleotide (FMN) cofactor and a conserved cysteine in light, oxygen or voltage (LOV) domains. The primary reactions of the Avena sativa phototropin 1 LOV2 domain were investigated by means of time-resolved and low-temperature fluorescence spectroscopy. Synchroscan streak camera experiments revealed a fluorescence lifetime of 2.2 ns in LOV2. A weak long-lived component with emission intensity from 600 to 650 nm was assigned to phosphorescence from the reactive FMN triplet state. This observation allowed determination of the LOV2 triplet state energy level at physiological temperature at 16600 cm
- Published
- 2011
- Full Text
- View/download PDF
7. The components of career capital and how they are acquired by knowledge workers across different industries
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Sutherland, M., primary, Naidu, G., additional, Seabela, S., additional, and Crosson, S., additional
- Published
- 2015
- Full Text
- View/download PDF
8. X-ray structure of toxin/anti-toxin complex from Mesorhizobium opportunistum
- Author
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Aakre, C.D., primary, Herrou, J., additional, Crosson, S., additional, and Laub, M.T., additional
- Published
- 2015
- Full Text
- View/download PDF
9. 1.7 Angstrom Structure of a Bacterial Phosphotransferase
- Author
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Willett, J.W., primary, Crosson, S., additional, and Herrou, J., additional
- Published
- 2015
- Full Text
- View/download PDF
10. 2.7 Angstrom Structure of a Phosphotransferase in Complex with a Receiver Domain
- Author
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Willett, J.W., primary, Herrou, J., additional, and Crosson, S., additional
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- 2015
- Full Text
- View/download PDF
11. 3.1 A resolution crystal structure of the B. pertussis BvgS periplasmic domain
- Author
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Dupre, E., primary, Herrou, J., additional, Lensink, M.F., additional, Wintjens, R., additional, Lebedev, A., additional, Crosson, S., additional, Villeret, V., additional, Locht, C., additional, Antoine, R., additional, and Jacob-Dubuisson, F., additional
- Published
- 2015
- Full Text
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12. Ultrafast spectroscopy of the LOV2 domain of phototropin: the light-driven switch works both ways
- Author
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Kennis, J.T.M., Crosson, S., Gauden, M.L., van Stokkum, N.H.M., Moffat, K., van Grondelle, R., and Biophysics Photosynthesis/Energy
- Published
- 2003
13. The Photobiology of Microbial Pathogenesis
- Author
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Madhani, HD, Idnurm, A, Crosson, S, Madhani, HD, Idnurm, A, and Crosson, S
- Published
- 2009
14. Microbiology - A bacterial pathogen sees the light
- Author
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Kennis, J.T.M., Crosson, S., and Biophysics Photosynthesis/Energy
- Abstract
An unusual photosensitive kinase is discovered in bacteria, where it increases virulence in response to light.
- Published
- 2007
- Full Text
- View/download PDF
15. X-ray structure of Brucella abortus RicA
- Author
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Herrou, J., primary and Crosson, S., additional
- Published
- 2013
- Full Text
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16. M.I.1 Mechanism of laminin assembly: Insight for structural repairs of MDC1A
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Yurchenco, P.D., primary, Crosson, S., additional, McKee, K.K., additional, and Ruegg, M.A., additional
- Published
- 2013
- Full Text
- View/download PDF
17. Crystal structure of Caulobacter myo-inositol binding protein bound to myo-inositol
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Herrou, J., primary and Crosson, S., additional
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- 2013
- Full Text
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18. The impact of empowering scientific advisory committees to constrain catch limits in US fisheries
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Crosson, S., primary
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- 2012
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19. Structure of the PhyR anti-anti-sigma domain bound to the anti-sigma factor, NepR
- Author
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Herrou, J., primary and Crosson, S., additional
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- 2012
- Full Text
- View/download PDF
20. 1.1 Angstrom-resolution crystal structure of the Brucella abortus ribonuclease toxin, BrnT
- Author
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Heaton, B., primary, Herrou, J., additional, and Crosson, S., additional
- Published
- 2012
- Full Text
- View/download PDF
21. ppGpp and Polyphosphate Modulate Cell Cycle Progression in Caulobacter crescentus
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Boutte, C. C., primary, Henry, J. T., additional, and Crosson, S., additional
- Published
- 2011
- Full Text
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22. Structure of the PhyR stress response regulator at 1.25 Angstrom resolution
- Author
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Herrou, J., primary and Crosson, S., additional
- Published
- 2010
- Full Text
- View/download PDF
23. A conserved mode of protein recognition and binding in a ParD-ParE toxin-antitoxin complex
- Author
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Crosson, S., primary and Dalton, K., additional
- Published
- 2010
- Full Text
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24. E46Q MUTANT OF PHOTOACTIVE YELLOW PROTEIN, P65 AT 110K
- Author
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Anderson, S., primary, Crosson, S., additional, and Moffat, K., additional
- Published
- 2004
- Full Text
- View/download PDF
25. E46Q MUTANT OF PHOTOACTIVE YELLOW PROTEIN, P63 AT 295K
- Author
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Anderson, S., primary, Crosson, S., additional, and Moffat, K., additional
- Published
- 2004
- Full Text
- View/download PDF
26. Time-resolved macromolecular crystallography: molecular movies?
- Author
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Moffat, K., primary, Srajer, V., additional, Pahl, R., additional, Ren, Z., additional, Schmidt, M., additional, Anderson, S., additional, Crosson, S., additional, Perman, B., additional, Rajagopal, S., additional, Ihee, H., additional, Bourgeois, D., additional, and Wulff, M., additional
- Published
- 2002
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27. Structural intermediates in the photocycle of E46Q mutant photoactive yellow protein
- Author
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Anderson, S., primary, Srajer, V., additional, Pahl, R., additional, Ihee, H., additional, Rajogopal, S., additional, Crosson, S., additional, Schmidt, M., additional, Schotte, F., additional, Anfinrud, P. A., additional, Wulff, M., additional, and Moffat, K., additional
- Published
- 2002
- Full Text
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28. Photoexcited structure of the plant photoreceptor domain, phy3 LOV2
- Author
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Crosson, S., primary and Moffat, K., additional
- Published
- 2002
- Full Text
- View/download PDF
29. Hormonal regulation of the phosphoenolpyruvate carboxykinase gene. Role of specific CCAAT/enhancer-binding protein isoforms.
- Author
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Crosson, S M and Roesler, W J
- Abstract
The CCAAT/enhancer-binding protein alpha (C/EBP) is a transcription factor that trans-activates a number of metabolically important genes. Previous work has demonstrated that C/EBPalpha and C/EBPbeta have the potential to mediate the cAMP responsiveness of phosphoenolpyruvate carboxykinase (PEPCK) in liver cells. However, these studies used GAL4 fusion proteins and artificial promoter-reporter gene vectors in transfection experiments; as a result, these studies only indicated that both isoforms had the potential to mediate the hormonal response and not which isoform actually participated in vivo. To address this issue, we produced hepatoma cell lines that stably expressed either a dominant negative inhibitor or antisense RNA for these two main liver C/EBP isoforms. Inhibition of all C/EBP isoforms via expression of the dominant negative protein eliminated cAMP responsiveness, and reduced glucocorticoid responsiveness, of the endogenous PEPCK gene in hepatoma cells. Antisense directed against C/EBPalpha mRNA, which reduced C/EBPalpha protein levels by nearly 80%, also significantly reduced the cAMP responsiveness of the endogenous PEPCK promoter, whereas antisense directed against C/EBPbeta was without effect. There was no major alteration in cAMP signaling in the C/EBPalpha antisense cells, as cAMP induction of the C/EBPbeta gene was similar to that in wild-type H4IIE cells. These data suggest that the alpha-isoform of C/EBP is specifically utilized for mediating the cAMP responsiveness of the PEPCK gene.
- Published
- 2000
30. The alpha-isoform of the CCAAT/enhancer-binding protein is required for mediating cAMP responsiveness of the phosphoenolpyruvate carboxykinase promoter in hepatoma cells.
- Author
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Roesler, W J, Crosson, S M, Vinson, C, and McFie, P J
- Abstract
The gene coding for phosphoenolpyruvate carboxykinase (GTP) (EC 4.1.1.32) is expressed in all gluconeogenic tissues, but stimulation of its rate of transcription by cAMP is robust only in liver. Evidence has accumulated which suggests that a liver-enriched transcription factor, likely a member of the CCAAT/enhancer binding protein (C/EBP) family, is required along with other ubiquitously expressed transcription factors to mediate this liver-specific response to cAMP. In this study, we examined the ability of C/EBP to participate in the cAMP-mediated activation of phosphoenolpyruvate carboxykinase (PEPCK) gene transcription in hepatoma cells. Expression of a dominant repressor of C/EBP in hepatoma cells significantly inhibited the protein kinase A-stimulated transcription of the PEPCK promoter, suggesting that a C/EBP family member was required for maximal transcriptional activation by protein kinase A. To provide additional support for this hypothesis, we prepared GAL4 fusion proteins containing C/EBP domains. Both C/EBPalpha and C/EBPbeta GAL4 fusion proteins were capable of stimulating transcription from promoters containing binding sites for the DNA-binding domain of GAL4. However, only the GAL4-C/EBPalpha fusion protein demonstrated the ability to synergize with the other transcription factors bound to the PEPCK promoter which are required to mediate cAMP responsiveness. The DNA-binding domain of C/EBPalpha was not required for this activity in hepatoma cells, although in non-hepatoma cells the basic region leucine zipper domain appeared to inhibit the ability of C/EBPalpha to participate in mediating cAMP responsiveness. These results suggest that the liver-specific nature of the cAMP responsiveness of the PEPCK promoter involves the recruitment of C/EBPalpha to the cAMP response unit.
- Published
- 1996
31. Letters.
- Author
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Nasberg B, Crosson S, Willis H, Geib S, and Clendenon KM
- Published
- 2009
32. Multiomic analysis reveals cellular, transcriptomic and epigenetic changes in intestinal pouches of ulcerative colitis patients.
- Author
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Zhao Y, Zhou R, Xie B, Liu CY, Kalski M, Cham CM, Jiang Z, Koval J, Weber CR, Rubin DT, Sogin M, Crosson S, Chen M, Huang J, Fiebig A, Dalal S, Chang EB, Basu A, and Pott S
- Subjects
- Humans, Female, Male, Adult, Enterocytes metabolism, Enterocytes pathology, Ileum metabolism, Ileum pathology, Ileum surgery, Proctocolectomy, Restorative, Colon pathology, Colon metabolism, Colon surgery, Middle Aged, Gene Expression Profiling methods, Colitis, Ulcerative genetics, Colitis, Ulcerative pathology, Colitis, Ulcerative surgery, Colitis, Ulcerative metabolism, Epigenesis, Genetic, Transcriptome, Colonic Pouches pathology
- Abstract
Total proctocolectomy with ileal pouch anal anastomosis is the standard of care for patients with severe ulcerative colitis. We generated a cell-type-resolved transcriptional and epigenetic atlas of ileal pouches using scRNA-seq and scATAC-seq data from paired biopsy samples of the ileal pouch and the ileal segment above the pouch (pre-pouch) from patients (male=4, female=2), and paired biopsies of the terminal ileum and ascending colon from healthy individuals (male=3, female=3) serving as reference. Our study finds an additional population of absorptive and secretory epithelial cells within the pouch but not the pre-pouch. These pouch-specific enterocytes express a subset of colon-specific genes, including CEACAM5 and CD24. However, compared to normal colonocytes, expression of these genes is lower, and these enterocytes also express inflammatory and secretory genes while maintaining expression of some ileal-specific genes. This cell-type-resolved transcriptomic and epigenetic atlas of the ileal pouch establishes a reference for investigating pouch physiology and pathology., Competing Interests: Competing interests: The authors declare no competing interests., (© 2025. The Author(s).)
- Published
- 2025
- Full Text
- View/download PDF
33. Microbially catalyzed conjugation of GABA and tyramine to bile acids.
- Author
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Mullowney MW, Fiebig A, Schnizlein MK, McMillin M, Rose AR, Koval J, Rubin D, Dalal S, Sogin ML, Chang EB, Sidebottom AM, and Crosson S
- Subjects
- Humans, Amino Acids, gamma-Aminobutyric Acid, Amines, Catalysis, Amides, Bile Acids and Salts, Pouchitis
- Abstract
Bile acids (BAs) are cholesterol-derived molecules that aid in digestion and nutrient absorption, regulate host metabolic processes, and influence physiology of the gut microbiota. Both the host and its microbiome contribute to enzymatic modifications that shape the chemical diversity of BAs in the gut. Several bacterial species have been reported to conjugate standard amino acids to BAs, but it was not known if bacteria conjugate BAs to other amine classes. Here, we show that Bacteroides fragilis strain P207, isolated from a bacterial bloom in the J-pouch of a patient with ulcerative colitis pouchitis, conjugates standard amino acids and the neuroactive amines γ-aminobutyric acid (GABA) and tyramine to deoxycholic acid. We extended this analysis to other human gut isolates and identified species that are competent to conjugate GABA and tyramine to primary and secondary BAs, and further identified diverse BA-GABA and BA-tyramine amides in human stool. A longitudinal metabolomic analysis of J-pouch contents of the patient from whom B. fragilis P207 was isolated revealed highly reduced levels of secondary bile acids and a shifting BA amide profile before, during, and after onset of pouchitis, including temporal changes in several BA-GABA amides. Treatment of pouchitis with ciprofloxacin was associated with a marked reduction of nearly all BA amides in the J-pouch. Our study expands the known repertoire of conjugated bile acids produced by bacteria to include BA conjugates to GABA and tyramine and demonstrates that these molecules are present in the human gut. IMPORTANCE BAs are modified in multiple ways by host enzymes and the microbiota to produce a chemically diverse set of molecules that assist in the digestive process and impact many physiological functions. This study reports the discovery of bacterial species that conjugate the neuroactive amines, GABA and tyramine, to primary and secondary BAs. We further present evidence that BA-GABA and BA-tyramine conjugates are present in the human gut, and document a shifting BA-GABA profile in a human pouchitis patient before, during, and after inflammation and antibiotic treatment. GABA and tyramine are common metabolic products of the gut microbiota and potent neuroactive molecules. GABA- and tyramine-conjugated BAs may influence receptor-mediated regulatory mechanisms of humans and their gut microbes, and absorption of these molecules and their entry into enterohepatic circulation may impact host physiology at distal tissue sites. This study defines new conjugated bile acids in the human gut., Competing Interests: The authors declare no conflict of interest.
- Published
- 2024
- Full Text
- View/download PDF
34. Bile acid fitness determinants of a Bacteroides fragilis isolate from a human pouchitis patient.
- Author
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Fiebig A, Schnizlein MK, Pena-Rivera S, Trigodet F, Dubey AA, Hennessy MK, Basu A, Pott S, Dalal S, Rubin D, Sogin ML, Eren AM, Chang EB, and Crosson S
- Subjects
- Humans, Bile Acids and Salts metabolism, Inflammation, Bile, Bacteroides fragilis metabolism, Pouchitis
- Abstract
Importance: The Gram-negative bacterium Bacteroides fragilis is a common member of the human gut microbiota that colonizes multiple host niches and can influence human physiology through a variety of mechanisms. Identification of genes that enable B. fragilis to grow across a range of host environments has been impeded in part by the relatively limited genetic tractability of this species. We have developed a high-throughput genetic resource for a B. fragilis strain isolated from a UC pouchitis patient. Bile acids limit microbial growth and are altered in abundance in UC pouches, where B. fragilis often blooms. Using this resource, we uncovered pathways and processes that impact B. fragilis fitness in bile and that may contribute to population expansions during bouts of gut inflammation., Competing Interests: The authors declare no conflict of interest.
- Published
- 2024
- Full Text
- View/download PDF
35. Cross-regulation in a three-component cell envelope stress signaling system of Brucella .
- Author
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Chen X, Alakavuklar MA, Fiebig A, and Crosson S
- Subjects
- Cell Wall metabolism, Cell Wall genetics, Brucella ovis genetics, Brucella ovis metabolism, Animals, Brucellosis microbiology, Humans, Mice, Signal Transduction, Gene Expression Regulation, Bacterial, Stress, Physiological, Bacterial Proteins genetics, Bacterial Proteins metabolism, Cell Membrane metabolism
- Abstract
Importance: As intracellular pathogens, Brucella must contend with a variety of host-derived stressors when infecting a host cell. The inner membrane, cell wall, and outer membrane, i.e. the cell envelope, of Brucella provide a critical barrier to host assault. A conserved regulatory mechanism known as two-component signaling (TCS) commonly controls transcription of genes that determine the structure and biochemical composition of the cell envelope during stress. We report the identification of previously uncharacterized TCS genes that determine Brucella ovis fitness in the presence of cell envelope disruptors and within infected mammalian host cells. Our study reveals a new molecular mechanism of TCS-dependent gene regulation, and thereby advances fundamental understanding of transcriptional regulatory processes in bacteria., Competing Interests: The authors declare no conflict of interest.
- Published
- 2023
- Full Text
- View/download PDF
36. Microbially-catalyzed conjugation of GABA and tyramine to bile acids.
- Author
-
Mullowney MW, Fiebig A, Schnizlein MK, McMillin M, Rose AR, Koval J, Rubin D, Dalal S, Sogin ML, Chang EB, Sidebottom AM, and Crosson S
- Abstract
Bile acids (BAs) are cholesterol-derived molecules that aid in digestion and nutrient absorption, regulate host metabolic processes, and influence physiology of the gut microbiota. Both the host and its microbiome contribute to enzymatic modifications that shape the chemical diversity of BAs in the gut. Several bacterial species have been reported to conjugate standard amino acids to BAs, but it was not known if bacteria conjugate BAs to other amine classes. Here, we show that Bacteroides fragilis strain P207, isolated from a bacterial bloom in the J-pouch of a patient with ulcerative colitis (UC) pouchitis, conjugates standard amino acids and the neuroactive amines γ-aminobutyric acid (GABA) and tyramine to deoxycholic acid. We extended this analysis to other human gut isolates and identified species that are competent to conjugate GABA and tyramine to primary and secondary BAs, and further identified diverse BA-GABA and BA-tyramine amides in human stool. A longitudinal metabolomic analysis of J-pouch contents of the patient from whom B. fragilis P207 was isolated revealed highly reduced levels of secondary bile acids and a shifting BA amide profile before, during, and after onset of pouchitis, including temporal changes in several BA-GABA amides. Treatment of pouchitis with ciprofloxacin was associated with a marked reduction of nearly all BA amides in the J-pouch. Our study expands the known repertoire of conjugated bile acids produced by bacteria to include BA conjugates to GABA and tyramine and demonstrates that these molecules are present in the human gut.
- Published
- 2023
- Full Text
- View/download PDF
37. XRE transcription factors conserved in Caulobacter and φCbK modulate adhesin development and phage production.
- Author
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McLaughlin M, Fiebig A, and Crosson S
- Subjects
- Transcription Factors genetics, Transcription Factors metabolism, Ecosystem, Xenobiotics metabolism, Adhesins, Bacterial genetics, Response Elements, Bacteriophages genetics, Caulobacter genetics, Caulobacter metabolism, Caulobacter crescentus metabolism
- Abstract
The xenobiotic response element (XRE) family of transcription factors (TFs), which are commonly encoded by bacteria and bacteriophage, regulate diverse features of bacterial cell physiology and impact phage infection dynamics. Through a pangenome analysis of Caulobacter species isolated from soil and aquatic ecosystems, we uncovered an apparent radiation of a paralogous XRE TF gene cluster, several of which have established functions in the regulation of holdfast adhesin development and biofilm formation in C. crescentus. We further discovered related XRE TFs throughout the class Alphaproteobacteria and its phages, including the φCbK Caulophage, suggesting that members of this cluster impact host-phage interactions. Here we show that a closely related group of XRE transcription factors encoded by both C. crescentus and φCbK can physically interact and function to control the transcription of a common gene set, influencing processes including holdfast development and the production of φCbK virions. The φCbK-encoded XRE paralog, tgrL, is highly expressed at the earliest stages of infection and can directly inhibit transcription of host genes including hfiA, a potent holdfast inhibitor, and gafYZ, an activator of prophage-like gene transfer agents (GTAs). XRE proteins encoded from the C. crescentus chromosome also directly repress gafYZ transcription, revealing a functionally redundant set of host regulators that may protect against spurious production of GTA particles and inadvertent cell lysis. Deleting the C. crescentus XRE transcription factors reduced φCbK burst size, while overexpressing these host genes or φCbK tgrL rescued this burst defect. We conclude that this XRE TF gene cluster, shared by C. crescentus and φCbK, plays an important role in adhesion regulation under phage-free conditions, and influences host-phage dynamics during infection., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2023 McLaughlin et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2023
- Full Text
- View/download PDF
38. Going vertical: examining the rise and impact of contemporary Russian sports cinema.
- Author
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Crosson S
- Abstract
Introduction: While Hollywood has been central to the definition and popularisation of the genre internationally, sport cinema also has a significant presence in national cinemas across the world, though less research has been undertaken to date of the place of sport within European cinema and its growing importance in this context. This article will introduce a new database and online research platform (Sport in European Cinema, sportandfilm.eu) recently made publicly available which enables a deeper consideration of the significance of sport in European cinema, including its increasing importance in the Russian context. Indeed the third most commercially successful indigenous film ever released (as of 2023) at the Russian box office is a sports film, Движение вверх ( Going Vertical (AKA Three Seconds ) (2017)., Methods: This article adopts a mixed-methods approach, combining quantitative and qualitative methods to examine the place of sport in European cinema, including a case study of contemporary Russian sport cinema and its connection with broader political and ideological messaging., Results: Sport cinema has become an increasingly important part of European cinema, both in terms of number of films produced and their impact on European society, as evident in the case study provided of Russian sport cinema., Conclusion: This paper introduces a new research database dedicated to European Sport Cinema and identifies the increasing importance of sport cinema in the European context. It includes a case study of contemporary Russian sport cinema and identifies its role in articulating and affirming existing power structures and ideological hegemony within Russian society, as evident within Going Vertical and further recent Russian sport films in a particularly challenging period of national and international instability and contestation., Competing Interests: The author declares that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (© 2023 Crosson.)
- Published
- 2023
- Full Text
- View/download PDF
39. The Caulobacter NtrB-NtrC two-component system bridges nitrogen assimilation and cell development.
- Author
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North H, McLaughlin M, Fiebig A, and Crosson S
- Subjects
- Base Sequence, Nitrogen metabolism, Bacterial Proteins genetics, Bacterial Proteins metabolism, DNA-Binding Proteins metabolism, Polysaccharides, Gene Expression Regulation, Bacterial, PII Nitrogen Regulatory Proteins genetics, PII Nitrogen Regulatory Proteins metabolism, Caulobacter genetics
- Abstract
A suite of molecular sensory systems enables Caulobacter to control growth, development, and reproduction in response to levels of essential elements. The bacterial enhancer-binding protein (bEBP) NtrC and its cognate sensor histidine kinase, NtrB, are key regulators of nitrogen assimilation in many bacteria, but their roles in Caulobacter metabolism and development are not well defined. Notably, Caulobacter NtrC is an unconventional bEBP that lacks the σ
54 -interacting loop commonly known as the GAFTGA motif. Here we show that deletion of Caulobacter crescentus ntrC slows cell growth in complex medium and that ntrB and ntrC are essential when ammonium is the sole nitrogen source due to their requirement for glutamine synthetase expression. Random transposition of a conserved IS3-family mobile genetic element frequently rescued the growth defect of ntrC mutant strains by restoring transcription of the glnBA operon, revealing a possible role for IS3 transposition in shaping the evolution of Caulobacter populations during nutrient limitation. We further identified dozens of direct NtrC-binding sites on the C. crescentus chromosome, with a large fraction located near genes involved in polysaccharide biosynthesis. The majority of binding sites align with those of the essential nucleoid-associated protein, GapR, or the cell cycle regulator, MucR1. NtrC is therefore predicted to directly impact the regulation of cell cycle and cell development. Indeed, loss of NtrC function led to elongated polar stalks and elevated synthesis of cell envelope polysaccharides. This study establishes regulatory connections between NtrC, nitrogen metabolism, polar morphogenesis, and envelope polysaccharide synthesis in Caulobacter . IMPORTANCE Bacteria balance cellular processes with the availability of nutrients in their environment. The NtrB-NtrC two-component signaling system is responsible for controlling nitrogen assimilation in many bacteria. We have characterized the effect of ntrB and ntrC deletion on Caulobacter growth and development and uncovered a role for spontaneous IS element transposition in the rescue of transcriptional and nutritional deficiencies caused by ntrC mutation. We further defined the regulon of Caulobacter NtrC, a bacterial enhancer-binding protein, and demonstrate that it shares specific binding sites with essential proteins involved in cell cycle regulation and chromosome organization. Our work provides a comprehensive view of transcriptional regulation mediated by a distinctive NtrC protein, establishing its connection to nitrogen assimilation and developmental processes in Caulobacter ., Competing Interests: The authors declare no conflict of interest.- Published
- 2023
- Full Text
- View/download PDF
40. Bile acid fitness determinants of a Bacteroides fragilis isolate from a human pouchitis patient.
- Author
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Fiebig A, Schnizlein MK, Pena-Rivera S, Trigodet F, Dubey AA, Hennessy M, Basu A, Pott S, Dalal S, Rubin D, Sogin ML, Murat Eren A, Chang EB, and Crosson S
- Abstract
Bacteroides fragilis comprises 1-5% of the gut microbiota in healthy humans but can expand to >50% of the population in ulcerative colitis (UC) patients experiencing inflammation. The mechanisms underlying such microbial blooms are poorly understood, but the gut of UC patients has physicochemical features that differ from healthy patients and likely impact microbial physiology. For example, levels of the secondary bile acid deoxycholate (DC) are highly reduced in the ileoanal J-pouch of UC colectomy patients. We isolated a B. fragilis strain from a UC patient with pouch inflammation (i.e. pouchitis) and developed it as a genetic model system to identify genes and pathways that are regulated by DC and that impact B. fragilis fitness in DC and crude bile. Treatment of B. fragilis with a physiologically relevant concentration of DC reduced cell growth and remodeled transcription of one-quarter of the genome. DC strongly induced expression of chaperones and select transcriptional regulators and efflux systems and downregulated protein synthesis genes. Using a barcoded collection of ≈50,000 unique insertional mutants, we further defined B. fragilis genes that contribute to fitness in media containing DC or crude bile. Genes impacting cell envelope functions including cardiolipin synthesis, cell surface glycosylation, and systems implicated in sodium-dependent bioenergetics were major bile acid fitness factors. As expected, there was limited overlap between transcriptionally regulated genes and genes that impacted fitness in bile when disrupted. Our study provides a genome-scale view of a B. fragilis bile response and genetic determinants of its fitness in DC and crude bile.
- Published
- 2023
- Full Text
- View/download PDF
41. The Brucella Cell Envelope.
- Author
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Alakavuklar MA, Fiebig A, and Crosson S
- Subjects
- Cell Membrane, Biological Evolution, Cell Division, Cell Wall, Brucella genetics
- Abstract
The cell envelope is a multilayered structure that insulates the interior of bacterial cells from an often chaotic outside world. Common features define the envelope across the bacterial kingdom, but the molecular mechanisms by which cells build and regulate this critical barrier are diverse and reflect the evolutionary histories of bacterial lineages. Intracellular pathogens of the genus Brucella exhibit marked differences in cell envelope structure, regulation, and biogenesis when compared to more commonly studied gram-negative bacteria and therefore provide an excellent comparative model for study of the gram-negative envelope. We review distinct features of the Brucella envelope, highlighting a conserved regulatory system that links cell cycle progression to envelope biogenesis and cell division. We further discuss recently discovered structural features of the Brucella envelope that ensure envelope integrity and that facilitate cell survival in the face of host immune stressors.
- Published
- 2023
- Full Text
- View/download PDF
42. "Exposing force": the COVID-19 pandemic and women's sport in Ireland during 2020-2021.
- Author
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Crosson S and Ní Chumhaill M
- Abstract
Introduction: An analysis of how the pandemic served to highlight neglected weaknesses and inequalities with regard to the structures and supports available to facilitate women's sport in Ireland., Methods: A survey conducted in the summer of 2021 with 194 female athletes across the island of Ireland. These athletes were engaged with the sports of camogie, Ladies Gaelic football, hockey, and rugby, and each responded to a 28-question survey., Results: Our findings indicate that the experiences of female athletes during the COVID-19 pandemic raise serious questions regarding equality in sport across gender lines. Concerns expressed by the surveyed athletes, especially in relation to access to facilities, inadequate sponsorship, and funding reveal salient aspects of the experiences of Irish female athletes during the pandemic, and its role as an "exposing force" of inequalities within Irish sport., Conclusion: The COVID-19 pandemic in Ireland has been a challenging and revealing period with regard to sport in Ireland, acting as an "exposing force" of the existing inequitable structures for both the support and coverage of women's sport. Such challenging periods can also offer opportunities to learn, progress and improve and already in the past year there is evidence of positive developments for women's sport in Ireland, developments that we contend were expedited due to the impact of the COVID-19 pandemic in Ireland., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (© 2023 Crosson and Ní Chumhaill.)
- Published
- 2023
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43. Quantifying the economic effects of different fishery management regimes in two otherwise similar fisheries.
- Author
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Liese C and Crosson S
- Subjects
- Animals, Gulf of Mexico, Southeastern United States, Seafood, Conservation of Natural Resources, Fisheries, Fishes
- Abstract
In the southeast U.S., two very similar fisheries are managed by very different management regimes. In the Gulf of Mexico Reef Fish fishery, all major species are managed by individual transferable quotas (ITQs). The neighboring S. Atlantic Snapper-Grouper fishery continues to be managed by traditional regulations such as vessel trip-limits and closed seasons. Using detailed landings and revenue data from logbooks together with trip-level and annual, vessel-level economic survey data, we develop financial statements for each fishery to estimate cost structures, profits, and resource rent. By comparing the two fisheries from an economic perspective, we illustrate the detrimental effects of the regulatory measures on the S. Atlantic Snapper-Grouper fishery and quantify the difference in economic outcomes, including estimating the difference in resource rent. We find that the choice of fishery management regime shows up as a regime shift in the productivity and profitability of the fisheries. The ITQ fishery generates substantially more resource rents than the traditionally managed fishery; the difference is a large fraction of revenue (~30%). In the S. Atlantic Snapper-Grouper fishery, the potential value of the resource has almost completely dissipated via lower ex-vessel prices and hundreds of thousands of gallons of wasted fuel. Excess use of labor is a lesser issue., Competing Interests: The authors have declared that no competing interests exist., (Copyright: This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.)
- Published
- 2023
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44. Endless microbes most beautiful and most wonderful.
- Author
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Barsh GS, Butler G, Copenhaver GP, Crosson S, Søgaard-Andersen L, and Stukenbrock EH
- Abstract
Competing Interests: I have read the journal’s policy and the authors of this manuscript have the following competing interests: All authors are members of the Editorial Board of PLOS Genetics.
- Published
- 2023
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45. Quantifying fish range shifts across poorly defined management boundaries.
- Author
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Palacios-Abrantes J, Crosson S, Dumas C, Fujita R, Levine A, Longo C, and Jensen OP
- Subjects
- Animals, Fisheries, Climate Change, Seasons, Acclimatization, Conservation of Natural Resources methods, Fishes, Bass, Flounder
- Abstract
Management regimes of marine resources that rely on spatial boundaries might be poorly adapted to climate change shifts in species distributions. This is of specific concern for the management of fish stocks that cross management jurisdictions, known as shared stocks. Transitioning to dynamic rules in spatial management has been suggested as a solution for mismatches between species distributions and the spatial boundaries. However, in many cases spatial boundaries are not clearly drawn, hampering such transitions. Here, we use black sea bass (Centropristis striata), summer flounder (Paralichthys dentatus) and scup (Stenotomus chrysops) as case studies to explore different approaches to designing spatial regulatory units to facilitate the adaptation of fisheries management to shifting distributions of shared stocks. First, we determine the yearly distribution of each stock within the United States Exclusive Economic Zone from 1951 to 2019 during Fall and Spring sampling seasons. Second, we explore two approaches for drawing regulatory units based on state waters and historical landings. Finally, we estimate each state's proportion of the stock's distribution and compare historical and recent values. We show that the distribution of all three stocks has changed relative to the years used to determine the current quota allocation across states, with an overall gain for central-northern states at the expense of the southernmost states. In terms of the distribution of allocation, we find that, while seasonal differences exist, the biggest differences in the proportion of the stock spatial distribution attributed to each state come from the method for designing regulatory units. Here, we show that the method used to define allocation units can have meaningful impacts on resulting adaptive policy. As climate change-driven conflicts in fishing resource allocation are expected to increase and deepen around the world, we provide a replicable approach to make an informed and transparent choice to support data-driven decision-making., Competing Interests: The authors have declared that no competing interests exist., (Copyright: This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.)
- Published
- 2023
- Full Text
- View/download PDF
46. A cryptic transcription factor regulates Caulobacter adhesin development.
- Author
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McLaughlin M, Hershey DM, Reyes Ruiz LM, Fiebig A, and Crosson S
- Subjects
- Transcription Factors genetics, Transcription Factors metabolism, Gene Expression Regulation, Bacterial, Adhesins, Bacterial genetics, Adhesins, Bacterial metabolism, Bacterial Adhesion genetics, Bacterial Proteins genetics, Bacterial Proteins metabolism, Caulobacter metabolism, Caulobacter crescentus metabolism
- Abstract
Alphaproteobacteria commonly produce an adhesin that is anchored to the exterior of the envelope at one cell pole. In Caulobacter crescentus this adhesin, known as the holdfast, facilitates attachment to solid surfaces and cell partitioning to air-liquid interfaces. An ensemble of two-component signal transduction (TCS) proteins controls C. crescentus holdfast biogenesis by indirectly regulating expression of HfiA, a potent inhibitor of holdfast synthesis. We performed a genetic selection to discover direct hfiA regulators that function downstream of the adhesion TCS system and identified rtrC, a hypothetical gene. rtrC transcription is directly activated by the adhesion TCS regulator, SpdR. Though its primary structure bears no resemblance to any defined protein family, RtrC binds and regulates dozens of sites on the C. crescentus chromosome via a pseudo-palindromic sequence. Among these binding sites is the hfiA promoter, where RtrC functions to directly repress transcription and thereby activate holdfast development. Either RtrC or SpdR can directly activate transcription of a second hfiA repressor, rtrB. Thus, environmental regulation of hfiA transcription by the adhesion TCS system is subject to control by an OR-gated type I coherent feedforward loop; these regulatory motifs are known to buffer gene expression against fluctuations in regulating signals. We have further assessed the functional role of rtrC in holdfast-dependent processes, including surface adherence to a cellulosic substrate and formation of pellicle biofilms at air-liquid interfaces. Strains harboring insertional mutations in rtrC have a diminished adhesion profile in a competitive cheesecloth binding assay and a reduced capacity to colonize pellicle biofilms in select media conditions. Our results add to an emerging understanding of the regulatory topology and molecular components of a complex bacterial cell adhesion control system., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2022 McLaughlin et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2022
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47. Editorial overview: Microbial cell regulation across multiple scales.
- Author
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Crosson S and Fiebig A
- Subjects
- Cell Cycle, Cell Growth Processes, Bacteria genetics
- Published
- 2021
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48. Early-Life Microbial Restitution Reduces Colitis Risk Promoted by Antibiotic-Induced Gut Dysbiosis in Interleukin 10 -/- Mice.
- Author
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Miyoshi J, Miyoshi S, Delmont TO, Cham C, Lee STM, Sakatani A, Yang K, Shan Y, Kennedy M, Kiefl E, Yousef M, Crosson S, Sogin M, Antonopoulos DA, Eren AM, Leone V, and Chang EB
- Subjects
- Animals, Anti-Bacterial Agents, Bacteroides immunology, Colitis immunology, Colitis metabolism, Colitis microbiology, Colon immunology, Colon metabolism, Colon pathology, Disease Models, Animal, Dysbiosis, Feces microbiology, Host-Pathogen Interactions, Immune Tolerance, Interleukin-10 genetics, Mice, Inbred C57BL, Mice, Knockout, Proof of Concept Study, Time Factors, Mice, Bacteroides growth & development, Colitis prevention & control, Colon microbiology, Gastrointestinal Microbiome drug effects, Interleukin-10 deficiency
- Abstract
Background & Aims: Perturbations in the early-life gut microbiome are associated with increased risk for complex immune disorders like inflammatory bowel diseases. We previously showed that maternal antibiotic-induced gut dysbiosis vertically transmitted to offspring increases experimental colitis risk in interleukin (IL) 10 gene deficient (IL10
-/- ) mice, a finding that may result from the loss/lack of essential microbes needed for appropriate immunologic education early in life. Here, we aimed to identify key microbes required for proper development of the early-life gut microbiome that decrease colitis risk in genetically susceptible animals., Methods: Metagenomic sequencing followed by reconstruction of metagenome-assembled genomes was performed on fecal samples of IL10-/- mice with and without antibiotic-induced dysbiosis to identify potential missing microbial members needed for immunologic education. One high-value target strain was then engrafted early and/or late into the gut microbiomes of IL10-/- mice with antibiotic-induced dysbiosis., Results: Early-, but not late-, life engraftment of a single dominant Bacteroides strain of non-antibiotic-treated IL10-/- mice was sufficient to restore the development of the gut microbiome, promote immune tolerance, and prevent colitis in IL10-/- mice that had antibiotic-induced dysbiosis., Conclusions: Restitution of a keystone microbial strain missing in the early-life antibiotic-induced gut dysbiosis results in recovery of the microbiome, proper development of immune tolerance, and reduced risk for colitis in genetically prone hosts., (Copyright © 2021 AGA Institute. All rights reserved.)- Published
- 2021
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49. The ChvG-ChvI and NtrY-NtrX Two-Component Systems Coordinately Regulate Growth of Caulobacter crescentus.
- Author
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Stein BJ, Fiebig A, and Crosson S
- Subjects
- Bacterial Proteins genetics, Caulobacter crescentus genetics, Phosphorylation, Regulon, Signal Transduction, Bacterial Proteins metabolism, Caulobacter crescentus growth & development, Caulobacter crescentus metabolism, Gene Expression Regulation, Bacterial
- Abstract
Two-component signaling systems (TCSs) are comprised of a sensory histidine kinase and a response regulator protein. In response to environmental changes, sensor kinases directly phosphorylate their cognate response regulator to affect gene expression. Bacteria typically express multiple TCSs that are insulated from one another and regulate distinct physiological processes. There are examples of cross-regulation between TCSs, but this phenomenon remains relatively unexplored. We have identified regulatory links between the ChvG-ChvI (ChvGI) and NtrY-NtrX (NtrYX) TCSs, which control important and often overlapping processes in alphaproteobacteria, including maintenance of the cell envelope. Deletion of chvG and chvI in Caulobacter crescentus limited growth in defined medium, and a selection for genetic suppressors of this growth phenotype uncovered interactions among chvGI , ntrYX , and ntrZ , which encodes a previously uncharacterized periplasmic protein. Significant overlap in the experimentally defined ChvI and NtrX transcriptional regulons provided support for the observed genetic connections between ntrYX and chvGI . Moreover, we present evidence that the growth defect of strains lacking chvGI is influenced by the phosphorylation state of NtrX and, to some extent, by levels of the TonB-dependent receptor ChvT. Measurements of NtrX phosphorylation in vivo indicated that NtrZ is an upstream regulator of NtrY and that NtrY primarily functions as an NtrX phosphatase. We propose a model in which NtrZ functions in the periplasm to inhibit NtrY phosphatase activity; regulation of phosphorylated NtrX levels by NtrZ and NtrY provides a mechanism to modulate and balance expression of the NtrX and ChvI regulons under different growth conditions. IMPORTANCE TCSs enable bacteria to regulate gene expression in response to physiochemical changes in their environment. The ChvGI and NtrYX TCSs regulate diverse pathways associated with pathogenesis, growth, and cell envelope function in many alphaproteobacteria. We used Caulobacter crescentus as a model to investigate regulatory connections between ChvGI and NtrYX. Our work defined the ChvI transcriptional regulon in C. crescentus and revealed a genetic interaction between ChvGI and NtrYX, whereby modulation of NtrYX signaling affects the survival of cells lacking ChvGI. In addition, we identified NtrZ as a periplasmic inhibitor of NtrY phosphatase activity in vivo . Our work establishes C. crescentus as an excellent model to investigate multilevel regulatory connections between ChvGI and NtrYX in alphaproteobacteria.
- Published
- 2021
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50. Brucella ovis Cysteine Biosynthesis Contributes to Peroxide Stress Survival and Fitness in the Intracellular Niche.
- Author
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Varesio LM, Fiebig A, and Crosson S
- Subjects
- Animals, Bacterial Proteins genetics, Bacterial Proteins metabolism, Brucella ovis classification, Macrophages immunology, Macrophages metabolism, Mutation, Sheep, Sulfur metabolism, Brucella ovis physiology, Cysteine biosynthesis, Host-Pathogen Interactions immunology, Oxidative Stress, Peroxides metabolism, Sheep Diseases metabolism, Sheep Diseases microbiology
- Abstract
Brucella ovis is an ovine intracellular pathogen with tropism for the male genital tract. To establish and maintain infection, B. ovis must survive stressful conditions inside host cells, including low pH, nutrient limitation, and reactive oxygen species. The same conditions are often encountered in axenic cultures during stationary phase. Studies of stationary phase may thus inform our understanding of Brucella infection biology, yet the genes and pathways that are important in Brucella stationary-phase physiology remain poorly defined. We measured fitness of a barcoded pool of B. ovis Tn- himar mutants as a function of growth phase and identified cysE as a determinant of fitness in stationary phase. CysE catalyzes the first step in cysteine biosynthesis from serine, and we provide genetic evidence that two related enzymes, CysK1 and CysK2, function redundantly to catalyze cysteine synthesis at steps downstream of CysE. Deleting cysE (Δ cysE ) or both cysK1 and cysK2 (Δ cysK1 Δ cysK2 ) results in premature entry into stationary phase, reduced culture yield, and sensitivity to exogenous hydrogen peroxide. These phenotypes can be chemically complemented by cysteine or glutathione. Δ cysE and Δ cysK1 Δ cysK2 strains have no defect in host cell entry in vitro but have significantly diminished intracellular fitness between 2 and 24 h postinfection. Our study has uncovered unexpected redundancy at the CysK step of cysteine biosynthesis in B. ovis and demonstrates that cysteine anabolism is a determinant of peroxide stress survival and fitness in the intracellular niche., (Copyright © 2021 American Society for Microbiology.)
- Published
- 2021
- Full Text
- View/download PDF
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