1. Thermostable HIV-1 group O reverse transcriptase variants with the same fidelity as murine leukaemia virus reverse transcriptase
- Author
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Mar Álvarez, Luis Menéndez-Arias, Verónica Barrioluengo, Daniela Barbieri, Centro de Biología Molecular Severo Ochoa [Madrid] (CBMSO), Universidad Autonoma de Madrid (UAM)-Consejo Superior de Investigaciones Científicas [Madrid] (CSIC), V. Barrioluengo, M. Alvarez, D. Barbieri, and L. Menéndez-Arias
- Subjects
Models, Molecular ,Hot Temperature ,DNA polymerase ,Base pair ,viruses ,Mutant ,DNA-SYNTHESIS FIDELITY ,Biochemistry ,Frameshift mutation ,03 medical and health sciences ,DNA POLYMERASE ,Enzyme Stability ,Nucleotide ,Molecular Biology ,MUTATION ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,REVERSE TRANSCRIPTASE ,biology ,030302 biochemistry & molecular biology ,RNA ,HIV ,Life Sciences ,RNA-Directed DNA Polymerase ,Cell Biology ,biochemical phenomena, metabolism, and nutrition ,Virology ,Molecular biology ,HIV Reverse Transcriptase ,Reverse transcriptase ,3. Good health ,Leukemia Virus, Murine ,Enzyme ,Amino Acid Substitution ,chemistry ,HIV-1 ,biology.protein - Abstract
Wild-type HIV-1 group O RT (reverse transcriptase) shows increased thermostability in comparison with HIV-1 group M subtype B RT and MLV (murine leukaemia virus) RT. However, its utility in the amplification of RNA targets is limited by the reduced accuracy of lentiviral RTs compared with oncoretroviral RTs (i.e. MLV RT). The effects of the mutations K65R, R78A and K65R/V75I on the fidelity of HIV-1 group O RTs were studied using gel-based and M13mp2 lacZ forward-mutation fidelity assays. Forward-mutation assays demonstrated that mutant RTs K65R, R78A and K65R/V75I showed >9-fold increased accuracy in comparison with the wild-type enzyme and were approximately two times more faithful than the MLV RT. Compared with MLV RT, all of the tested HIV-1 group O RT variants showed decreased frameshift fidelity. However, K65R RT showed a higher tendency to introduce one-nucleotide deletions in comparison with other HIV-1 group O RT variants. R78A had a destabilizing effect on the RT, either in the presence or absence of V75I. At temperatures above 52 °C, K65R and K65R/V75I retained similar levels of DNA polymerase activity to the wild-type HIV-1 group O RT, but were more efficient than HIV-1 group M subtype B and MLV RTs. K65R, K65R/V75I and R78A RTs showed decreased misinsertion and mispair extension fidelity in comparison with the wild-type enzyme for most base pairs studied. These assays revealed that nucleotide selection is mainly governed by kpol (pol is polymerization) in the case of K65R, whereas both kpol and Kd affect nucleotide discrimination in the case of K65R/V75I.
- Published
- 2011
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