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280 results on '"Demeter, Fabrice"'

1. The selection landscape and genetic legacy of ancient Eurasians

Author: Irving-Pease, Evan K, Refoyo-Martínez, Alba, Barrie, William, Ingason, Andrés, Pearson, Alice, Fischer, Anders, Sjögren, Karl-Göran, Halgren, Alma S, Macleod, Ruairidh, Demeter, Fabrice, Henriksen, Rasmus A, Vimala, Tharsika, McColl, Hugh, Vaughn, Andrew H, Speidel, Leo, Stern, Aaron J, Scorrano, Gabriele, Ramsøe, Abigail, Schork, Andrew J, Rosengren, Anders, Zhao, Lei, Kristiansen, Kristian, Iversen, Astrid KN, Fugger, Lars, Sudmant, Peter H, Lawson, Daniel J, Durbin, Richard, Korneliussen, Thorfinn, Werge, Thomas, Allentoft, Morten E, Sikora, Martin, Nielsen, Rasmus, Racimo, Fernando, and Willerslev, Eske
Subjects: Biological Sciences, Genetics, History, Heritage and Archaeology, Human Society, Archaeology, Historical Studies, Anthropology, Good Health and Well Being, Humans, Alzheimer Disease, Affect, Alleles, Agriculture, Europe, General Science & Technology
Abstract: The Holocene (beginning around 12,000 years ago) encompassed some of the most significant changes in human evolution, with far-reaching consequences for the dietary, physical and mental health of present-day populations. Using a dataset of more than 1,600 imputed ancient genomes1, we modelled the selection landscape during the transition from hunting and gathering, to farming and pastoralism across West Eurasia. We identify key selection signals related to metabolism, including that selection at the FADS cluster began earlier than previously reported and that selection near the LCT locus predates the emergence of the lactase persistence allele by thousands of years. We also find strong selection in the HLA region, possibly due to increased exposure to pathogens during the Bronze Age. Using ancient individuals to infer local ancestry tracts in over 400,000 samples from the UK Biobank, we identify widespread differences in the distribution of Mesolithic, Neolithic and Bronze Age ancestries across Eurasia. By calculating ancestry-specific polygenic risk scores, we show that height differences between Northern and Southern Europe are associated with differential Steppe ancestry, rather than selection, and that risk alleles for mood-related phenotypes are enriched for Neolithic farmer ancestry, whereas risk alleles for diabetes and Alzheimer's disease are enriched for Western hunter-gatherer ancestry. Our results indicate that ancient selection and migration were large contributors to the distribution of phenotypic diversity in present-day Europeans.
Published: 2024

2. Elevated genetic risk for multiple sclerosis emerged in steppe pastoralist populations

Author: Barrie, William, Yang, Yaoling, Irving-Pease, Evan K, Attfield, Kathrine E, Scorrano, Gabriele, Jensen, Lise Torp, Armen, Angelos P, Dimopoulos, Evangelos Antonios, Stern, Aaron, Refoyo-Martinez, Alba, Pearson, Alice, Ramsøe, Abigail, Gaunitz, Charleen, Demeter, Fabrice, Jørkov, Marie Louise S, Møller, Stig Bermann, Springborg, Bente, Klassen, Lutz, Hyldgård, Inger Marie, Wickmann, Niels, Vinner, Lasse, Korneliussen, Thorfinn Sand, Allentoft, Morten E, Sikora, Martin, Kristiansen, Kristian, Rodriguez, Santiago, Nielsen, Rasmus, Iversen, Astrid KN, Lawson, Daniel J, Fugger, Lars, and Willerslev, Eske
Subjects: Biological Sciences, Genetics, History, Heritage and Archaeology, Archaeology, Historical Studies, Neurosciences, Autoimmune Disease, Multiple Sclerosis, Brain Disorders, Neurodegenerative, Human Genome, Aetiology, 2.1 Biological and endogenous factors, Inflammatory and immune system, Neurological, Humans, Neurodegenerative Diseases, Cluster Analysis, Population Density, Child, Preschool, Europe, General Science & Technology
Abstract: Multiple sclerosis (MS) is a neuro-inflammatory and neurodegenerative disease that is most prevalent in Northern Europe. Although it is known that inherited risk for MS is located within or in close proximity to immune-related genes, it is unknown when, where and how this genetic risk originated1. Here, by using a large ancient genome dataset from the Mesolithic period to the Bronze Age2, along with new Medieval and post-Medieval genomes, we show that the genetic risk for MS rose among pastoralists from the Pontic steppe and was brought into Europe by the Yamnaya-related migration approximately 5,000 years ago. We further show that these MS-associated immunogenetic variants underwent positive selection both within the steppe population and later in Europe, probably driven by pathogenic challenges coinciding with changes in diet, lifestyle and population density. This study highlights the critical importance of the Neolithic period and Bronze Age as determinants of modern immune responses and their subsequent effect on the risk of developing MS in a changing environment.
Published: 2024

3. 100 ancient genomes show repeated population turnovers in Neolithic Denmark

Author: Allentoft, Morten E, Sikora, Martin, Fischer, Anders, Sjögren, Karl-Göran, Ingason, Andrés, Macleod, Ruairidh, Rosengren, Anders, Schulz Paulsson, Bettina, Jørkov, Marie Louise Schjellerup, Novosolov, Maria, Stenderup, Jesper, Price, T Douglas, Fischer Mortensen, Morten, Nielsen, Anne Birgitte, Ulfeldt Hede, Mikkel, Sørensen, Lasse, Nielsen, Poul Otto, Rasmussen, Peter, Jensen, Theis Zetner Trolle, Refoyo-Martínez, Alba, Irving-Pease, Evan K, Barrie, William, Pearson, Alice, Sousa da Mota, Bárbara, Demeter, Fabrice, Henriksen, Rasmus A, Vimala, Tharsika, McColl, Hugh, Vaughn, Andrew, Vinner, Lasse, Renaud, Gabriel, Stern, Aaron, Johannsen, Niels Nørkjær, Ramsøe, Abigail Daisy, Schork, Andrew Joseph, Ruter, Anthony, Gotfredsen, Anne Birgitte, Henning Nielsen, Bjarne, Brinch Petersen, Erik, Kannegaard, Esben, Hansen, Jesper, Buck Pedersen, Kristoffer, Pedersen, Lisbeth, Klassen, Lutz, Meldgaard, Morten, Johansen, Morten, Uldum, Otto Christian, Lotz, Per, Lysdahl, Per, Bangsgaard, Pernille, Petersen, Peter Vang, Maring, Rikke, Iversen, Rune, Wåhlin, Sidsel, Anker Sørensen, Søren, Andersen, Søren H, Jørgensen, Thomas, Lynnerup, Niels, Lawson, Daniel J, Rasmussen, Simon, Korneliussen, Thorfinn Sand, Kjær, Kurt H, Durbin, Richard, Nielsen, Rasmus, Delaneau, Olivier, Werge, Thomas, Kristiansen, Kristian, and Willerslev, Eske
Subjects: Biological Sciences, Genetics, History, Heritage and Archaeology, Human Society, Archaeology, Historical Studies, Anthropology, Humans, Genomics, Genotype, Denmark, Emigrants and Immigrants, Scandinavians and Nordic People, General Science & Technology
Abstract: Major migration events in Holocene Eurasia have been characterized genetically at broad regional scales1-4. However, insights into the population dynamics in the contact zones are hampered by a lack of ancient genomic data sampled at high spatiotemporal resolution5-7. Here, to address this, we analysed shotgun-sequenced genomes from 100 skeletons spanning 7,300 years of the Mesolithic period, Neolithic period and Early Bronze Age in Denmark and integrated these with proxies for diet (13C and 15N content), mobility (87Sr/86Sr ratio) and vegetation cover (pollen). We observe that Danish Mesolithic individuals of the Maglemose, Kongemose and Ertebølle cultures form a distinct genetic cluster related to other Western European hunter-gatherers. Despite shifts in material culture they displayed genetic homogeneity from around 10,500 to 5,900 calibrated years before present, when Neolithic farmers with Anatolian-derived ancestry arrived. Although the Neolithic transition was delayed by more than a millennium relative to Central Europe, it was very abrupt and resulted in a population turnover with limited genetic contribution from local hunter-gatherers. The succeeding Neolithic population, associated with the Funnel Beaker culture, persisted for only about 1,000 years before immigrants with eastern Steppe-derived ancestry arrived. This second and equally rapid population replacement gave rise to the Single Grave culture with an ancestry profile more similar to present-day Danes. In our multiproxy dataset, these major demographic events are manifested as parallel shifts in genotype, phenotype, diet and land use.
Published: 2024

4. Population genomics of post-glacial western Eurasia

Author: Allentoft, Morten E, Sikora, Martin, Refoyo-Martínez, Alba, Irving-Pease, Evan K, Fischer, Anders, Barrie, William, Ingason, Andrés, Stenderup, Jesper, Sjögren, Karl-Göran, Pearson, Alice, Sousa da Mota, Bárbara, Schulz Paulsson, Bettina, Halgren, Alma, Macleod, Ruairidh, Jørkov, Marie Louise Schjellerup, Demeter, Fabrice, Sørensen, Lasse, Nielsen, Poul Otto, Henriksen, Rasmus A, Vimala, Tharsika, McColl, Hugh, Margaryan, Ashot, Ilardo, Melissa, Vaughn, Andrew, Fischer Mortensen, Morten, Nielsen, Anne Birgitte, Ulfeldt Hede, Mikkel, Johannsen, Niels Nørkjær, Rasmussen, Peter, Vinner, Lasse, Renaud, Gabriel, Stern, Aaron, Jensen, Theis Zetner Trolle, Scorrano, Gabriele, Schroeder, Hannes, Lysdahl, Per, Ramsøe, Abigail Daisy, Skorobogatov, Andrei, Schork, Andrew Joseph, Rosengren, Anders, Ruter, Anthony, Outram, Alan, Timoshenko, Aleksey A, Buzhilova, Alexandra, Coppa, Alfredo, Zubova, Alisa, Silva, Ana Maria, Hansen, Anders J, Gromov, Andrey, Logvin, Andrey, Gotfredsen, Anne Birgitte, Henning Nielsen, Bjarne, González-Rabanal, Borja, Lalueza-Fox, Carles, McKenzie, Catriona J, Gaunitz, Charleen, Blasco, Concepción, Liesau, Corina, Martinez-Labarga, Cristina, Pozdnyakov, Dmitri V, Cuenca-Solana, David, Lordkipanidze, David O, En’shin, Dmitri, Salazar-García, Domingo C, Price, T Douglas, Borić, Dušan, Kostyleva, Elena, Veselovskaya, Elizaveta V, Usmanova, Emma R, Cappellini, Enrico, Brinch Petersen, Erik, Kannegaard, Esben, Radina, Francesca, Eylem Yediay, Fulya, Duday, Henri, Gutiérrez-Zugasti, Igor, Merts, Ilya, Potekhina, Inna, Shevnina, Irina, Altinkaya, Isin, Guilaine, Jean, Hansen, Jesper, Aura Tortosa, Joan Emili, Zilhão, João, Vega, Jorge, Buck Pedersen, Kristoffer, Tunia, Krzysztof, Zhao, Lei, Mylnikova, Liudmila N, Larsson, Lars, Metz, Laure, Yepiskoposyan, Levon, Pedersen, Lisbeth, Sarti, Lucia, Orlando, Ludovic, Slimak, Ludovic, Klassen, Lutz, Blank, Malou, González-Morales, Manuel, and Silvestrini, Mara
Subjects: Biological Sciences, Genetics, History, Heritage and Archaeology, Human Society, Historical Studies, Anthropology, Biotechnology, Humans, Genomics, Diploidy, Agriculture, Europe, Metagenomics, General Science & Technology
Abstract: Western Eurasia witnessed several large-scale human migrations during the Holocene1-5. Here, to investigate the cross-continental effects of these migrations, we shotgun-sequenced 317 genomes-mainly from the Mesolithic and Neolithic periods-from across northern and western Eurasia. These were imputed alongside published data to obtain diploid genotypes from more than 1,600 ancient humans. Our analyses revealed a 'great divide' genomic boundary extending from the Black Sea to the Baltic. Mesolithic hunter-gatherers were highly genetically differentiated east and west of this zone, and the effect of the neolithization was equally disparate. Large-scale ancestry shifts occurred in the west as farming was introduced, including near-total replacement of hunter-gatherers in many areas, whereas no substantial ancestry shifts happened east of the zone during the same period. Similarly, relatedness decreased in the west from the Neolithic transition onwards, whereas, east of the Urals, relatedness remained high until around 4,000 BP, consistent with the persistence of localized groups of hunter-gatherers. The boundary dissolved when Yamnaya-related ancestry spread across western Eurasia around 5,000 BP, resulting in a second major turnover that reached most parts of Europe within a 1,000-year span. The genetic origin and fate of the Yamnaya have remained elusive, but we show that hunter-gatherers from the Middle Don region contributed ancestry to them. Yamnaya groups later admixed with individuals associated with the Globular Amphora culture before expanding into Europe. Similar turnovers occurred in western Siberia, where we report new genomic data from a 'Neolithic steppe' cline spanning the Siberian forest steppe to Lake Baikal. These prehistoric migrations had profound and lasting effects on the genetic diversity of Eurasian populations.
Published: 2024

5. Palaeoenvironments and hominin evolutionary dynamics in southeast Asia

Author: Bacon, Anne-Marie, Bourgon, Nicolas, Dufour, Elise, Demeter, Fabrice, Zanolli, Clément, Westaway, Kira E., Joannes-Boyau, Renaud, Duringer, Philippe, Ponche, Jean-Luc, Morley, Mike W., Suzzoni, Eric, Frangeul, Sébastien, Boesch, Quentin, Antoine, Pierre-Olivier, Boualaphane, Souliphane, Sichanthongtip, Phonephanh, Sihanam, Daovee, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Fiorillo, Denis, Tombret, Olivier, Patole-Edoumba, Elise, Zachwieja, Alexandra, Luangkhoth, Thonglith, Souksavatdy, Viengkeo, Dunn, Tyler E., Shackelford, Laura, and Hublin, Jean-Jacques
Published: 2023
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6. Early presence of Homo sapiens in Southeast Asia by 86–68 kyr at Tam Pà Ling, Northern Laos

Author: Freidline, Sarah E., Westaway, Kira E., Joannes-Boyau, Renaud, Duringer, Philippe, Ponche, Jean-Luc, Morley, Mike W., Hernandez, Vito C., McAllister-Hayward, Meghan S., McColl, Hugh, Zanolli, Clément, Gunz, Philipp, Bergmann, Inga, Sichanthongtip, Phonephanh, Sihanam, Daovee, Boualaphane, Souliphane, Luangkhoth, Thonglith, Souksavatdy, Viengkeo, Dosseto, Anthony, Boesch, Quentin, Patole-Edoumba, Elise, Aubaile, Françoise, Crozier, Françoise, Suzzoni, Eric, Frangeul, Sébastien, Bourgon, Nicolas, Zachwieja, Alexandra, Dunn, Tyler E., Bacon, Anne-Marie, Hublin, Jean-Jacques, Shackelford, Laura, and Demeter, Fabrice
Published: 2023
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7. Publisher Correction: Population genomics of post-glacial western Eurasia

Author: Allentoft, Morten E., Sikora, Martin, Refoyo-Martínez, Alba, Irving-Pease, Evan K., Fischer, Anders, Barrie, William, Ingason, Andrés, Stenderup, Jesper, Sjögren, Karl-Göran, Pearson, Alice, Sousa da Mota, Bárbara, Schulz Paulsson, Bettina, Halgren, Alma, Macleod, Ruairidh, Jørkov, Marie Louise Schjellerup, Demeter, Fabrice, Sørensen, Lasse, Nielsen, Poul Otto, Henriksen, Rasmus A., Vimala, Tharsika, McColl, Hugh, Margaryan, Ashot, Ilardo, Melissa, Vaughn, Andrew, Fischer Mortensen, Morten, Nielsen, Anne Birgitte, Ulfeldt Hede, Mikkel, Johannsen, Niels Nørkjær, Rasmussen, Peter, Vinner, Lasse, Renaud, Gabriel, Stern, Aaron, Jensen, Theis Zetner Trolle, Scorrano, Gabriele, Schroeder, Hannes, Lysdahl, Per, Ramsøe, Abigail Daisy, Skorobogatov, Andrei, Schork, Andrew Joseph, Rosengren, Anders, Ruter, Anthony, Outram, Alan, Timoshenko, Aleksey A., Buzhilova, Alexandra, Coppa, Alfredo, Zubova, Alisa, Silva, Ana Maria, Hansen, Anders J., Gromov, Andrey, Logvin, Andrey, Gotfredsen, Anne Birgitte, Henning Nielsen, Bjarne, González-Rabanal, Borja, Lalueza-Fox, Carles, McKenzie, Catriona J., Gaunitz, Charleen, Blasco, Concepción, Liesau, Corina, Martinez-Labarga, Cristina, Pozdnyakov, Dmitri V., Cuenca-Solana, David, Lordkipanidze, David O., En’shin, Dmitri, Salazar-García, Domingo C., Price, T. Douglas, Borić, Dušan, Kostyleva, Elena, Veselovskaya, Elizaveta V., Usmanova, Emma R., Cappellini, Enrico, Brinch Petersen, Erik, Kannegaard, Esben, Radina, Francesca, Eylem Yediay, Fulya, Duday, Henri, Gutiérrez-Zugasti, Igor, Merts, Ilya, Potekhina, Inna, Shevnina, Irina, Altinkaya, Isin, Guilaine, Jean, Hansen, Jesper, Aura Tortosa, Joan Emili, Zilhão, João, Vega, Jorge, Buck Pedersen, Kristoffer, Tunia, Krzysztof, Zhao, Lei, Mylnikova, Liudmila N., Larsson, Lars, Metz, Laure, Yepiskoposyan, Levon, Pedersen, Lisbeth, Sarti, Lucia, Orlando, Ludovic, Slimak, Ludovic, Klassen, Lutz, Blank, Malou, González-Morales, Manuel, Silvestrini, Mara, Vretemark, Maria, Nesterova, Marina S., Rykun, Marina, Rolfo, Mario Federico, Szmyt, Marzena, Przybyła, Marcin, Calattini, Mauro, Sablin, Mikhail, Dobisíková, Miluše, Meldgaard, Morten, Johansen, Morten, Berezina, Natalia, Card, Nick, Saveliev, Nikolai A., Poshekhonova, Olga, Rickards, Olga, Lozovskaya, Olga V., Gábor, Olivér, Uldum, Otto Christian, Aurino, Paola, Kosintsev, Pavel, Courtaud, Patrice, Ríos, Patricia, Mortensen, Peder, Lotz, Per, Persson, Per, Bangsgaard, Pernille, de Barros Damgaard, Peter, Vang Petersen, Peter, Martinez, Pilar Prieto, Włodarczak, Piotr, Smolyaninov, Roman V., Maring, Rikke, Menduiña, Roberto, Badalyan, Ruben, Iversen, Rune, Turin, Ruslan, Vasilyev, Sergey, Wåhlin, Sidsel, Borutskaya, Svetlana, Skochina, Svetlana, Sørensen, Søren Anker, Andersen, Søren H., Jørgensen, Thomas, Serikov, Yuri B., Molodin, Vyacheslav I., Smrcka, Vaclav, Merts, Victor, Appadurai, Vivek, Moiseyev, Vyacheslav, Magnusson, Yvonne, Kjær, Kurt H., Lynnerup, Niels, Lawson, Daniel J., Sudmant, Peter H., Rasmussen, Simon, Korneliussen, Thorfinn Sand, Durbin, Richard, Nielsen, Rasmus, Delaneau, Olivier, Werge, Thomas, Racimo, Fernando, Kristiansen, Kristian, and Willerslev, Eske
Published: 2024
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8. Dietary strategies of Pleistocene Pongo sp. and Homo erectus on Java (Indonesia)

Author: Kubat, Jülide, Nava, Alessia, Bondioli, Luca, Dean, M. Christopher, Zanolli, Clément, Bourgon, Nicolas, Bacon, Anne-Marie, Demeter, Fabrice, Peripoli, Beatrice, Albert, Richard, Lüdecke, Tina, Hertler, Christine, Mahoney, Patrick, Kullmer, Ottmar, Schrenk, Friedemann, and Müller, Wolfgang
Published: 2023
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9. A Middle Pleistocene Denisovan molar from the Annamite Chain of northern Laos

Author: Demeter, Fabrice, Zanolli, Clément, Westaway, Kira E., Joannes-Boyau, Renaud, Duringer, Philippe, Morley, Mike W., Welker, Frido, Rüther, Patrick L., Skinner, Matthew M., McColl, Hugh, Gaunitz, Charleen, Vinner, Lasse, Dunn, Tyler E., Olsen, Jesper V., Sikora, Martin, Ponche, Jean-Luc, Suzzoni, Eric, Frangeul, Sébastien, Boesch, Quentin, Antoine, Pierre-Olivier, Pan, Lei, Xing, Song, Zhao, Jian-Xin, Bailey, Richard M., Boualaphane, Souliphane, Sichanthongtip, Phonephanh, Sihanam, Daovee, Patole-Edoumba, Elise, Aubaile, Françoise, Crozier, Françoise, Bourgon, Nicolas, Zachwieja, Alexandra, Luangkhoth, Thonglith, Souksavatdy, Viengkeo, Sayavongkhamdy, Thongsa, Cappellini, Enrico, Bacon, Anne-Marie, Hublin, Jean-Jacques, Willerslev, Eske, and Shackelford, Laura
Published: 2022
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10. Trophic ecology of a Late Pleistocene early modern human from tropical Southeast Asia inferred from zinc isotopes

Author: Bourgon, Nicolas, Jaouen, Klervia, Bacon, Anne-Marie, Dufour, Elise, McCormack, Jeremy, Tran, N.-Han, Trost, Manuel, Fiorillo, Denis, Dunn, Tyler E., Zanolli, Clément, Zachwieja, Alexandra, Duringer, Philippe, Ponche, Jean-Luc, Boesch, Quentin, Antoine, Pierre-Olivier, Westaway, Kira E., Joannes-Boyau, Renaud, Suzzoni, Eric, Frangeul, Sébastien, Crozier, Françoise, Aubaile, Françoise, Patole-Edoumba, Elise, Luangkhoth, Thonglith, Souksavatdy, Viengkeo, Boualaphane, Souliphane, Sayavonkhamdy, Thongsa, Sichanthongtip, Phonephanh, Sihanam, Daovee, Demeter, Fabrice, Shackelford, Laura L., Hublin, Jean-Jacques, and Tütken, Thomas
Published: 2021
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11. Shape analysis of the nasal complex among South African groups from CBCT scans

Author: Ridel, Alison F., primary, Demeter, Fabrice, primary, L’Abbé, Ericka N., primary, Vandermeulen, Dirk, primary, and Oettlé, Anna C., primary
Published: 2024
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12. Steppe Ancestry in western Eurasia and the spread of the Germanic Languages

Author: McColl, Hugh, primary, Kroonen, Guus, additional, Moreno-Mayar, J. Víctor, additional, Valeur Seersholm, Frederik, additional, Scorrano, Gabriele, additional, Pinotti, Thomaz, additional, Vimala, Tharsika, additional, Sindbæk, Søren M., additional, Ethelberg, Per, additional, Fyfe, Ralph, additional, Gaillard, Marie-José, additional, Larsen, Hanne M. Ellegård, additional, Mortensen, Morten Fischer, additional, Demeter, Fabrice, additional, Jørkov, Marie Louise S., additional, Bergerbrant, Sophie, additional, Damgaard, Peter de Barros, additional, Allentoft, Morten E., additional, Vinner, Lasse, additional, Gaunitz, Charleen, additional, Ramsøe, Abigail, additional, Altinkaya, Isin, additional, Amund Henriksen, Rasmus, additional, Irving-Pease, Evan K., additional, Sabatini, Serena, additional, Fischer, Anders, additional, Barrie, William, additional, Ingason, Andrés, additional, Rosengren, Anders, additional, Vaughn, Andrew, additional, Cao, Jialu, additional, Staring, Jacqueline, additional, Stenderup, Jesper, additional, Yediay, Fulya Eylem, additional, Ahlström, Torbjörn, additional, Albris, Sofie Laurine, additional, Atabiev, Biyaslan, additional, Bangsgaard, Pernille, additional, Belcastro, Maria Giovanna, additional, Card, Nick, additional, Charlier, Philippe, additional, Chernykh, Elizaveta, additional, Christiansen, Torben Trier, additional, Coppa, Alfredo, additional, De Coster, Maura, additional, Denham, Sean Dexter, additional, Desenne, Sophie, additional, Downes, Jane, additional, Frei, Karin Margarita, additional, Gábor, Olivér, additional, Gårdsvoll, Johan Zakarias, additional, Glørstad, Zanette Tsigaridas, additional, Hansen, Jesper, additional, Heeren, Stijn, additional, Henriksen, Merete, additional, Heyd, Volker, additional, Høj, Mette, additional, Holst, Mads Kähler, additional, Jankauskas, Rimantas, additional, Janson, Henrik, additional, Jessen, Mads Dengsø, additional, Johannsen, Jens Winther, additional, Johansen, Torkel, additional, Kastholm, Ole Thirup, additional, Kern, Anton, additional, Khaskhanov, Ruslan, additional, Kjær, Katrine, additional, Kolosov, Vladimir, additional, Kootker, Lisette M., additional, Larsen, Anne Christine, additional, Lejars, Thierry, additional, Løvschal, Mette, additional, Lynnerup, Niels, additional, Magnusson, Yvonne, additional, Mannermaa, Kristiina, additional, Masyakin, Vyacheslav, additional, Melheim, Anne Lene, additional, Merkyte, Inga, additional, Moiseyev, Vyacheslav, additional, Møller, Stig Bergmann, additional, Molnár, Erika, additional, Mortensen, Nadja, additional, Murphy, Eileen, additional, Nielsen, Bjarne Henning, additional, Pany-Kucera, Doris, additional, Paulsson, Bettina Schulz, additional, Ponce de León, Marcia S, additional, Reiersen, Håkon, additional, Reinhard, Walter, additional, Sajantila, Antti, additional, Skar, Birgitte, additional, Slavchev, Vladimir, additional, Smrčka, Václav, additional, Sørensen, Lasse, additional, Tiefengraber, Georg, additional, Uldum, Otto Christian, additional, Vega, Jorge, additional, Vitali, Daniele, additional, Voloshinov, Alexey, additional, Wåhlin, Sidsel, additional, Wendling, Holger, additional, Wessman, Anna, additional, Wilhelmson, Helene, additional, Wiltschke, Karin, additional, Zilhao, João, additional, Zollikofer, Christoph PE, additional, Sand Korneliussen, Thorfinn, additional, Chaume, Bruno, additional, Demoule, Jean-Paul, additional, Werge, Thomas, additional, Olsen, Line, additional, Nielsen, Rasmus, additional, Hedeager, Lotte, additional, Kristiansen, Kristian, additional, Sikora, Martin, additional, and Willerslev, Eske, additional
Published: 2024
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13. Zinc isotopes in Late Pleistocene fossil teeth from a Southeast Asian cave setting preserve paleodietary information

Author: Bourgon, Nicolas, Jaouen, Klervia, Bacon, Anne-Marie, Jochum, KlausPeter, Dufour, Elise, Duringer, Philippe, Ponche, Jean-Luc, Joannes-Boyau, Renaud, Boesch, Quentin, Antoine, Pierre-Olivier, Hullot, Manon, Weis, Ulrike, Schulz-Kornas, Ellen, Trost, Manuel, Fiorillo, Denis, Demeter, Fabrice, Patole-Edoumba, Elise, Shackelford, Laura L., Dunn, Tyler E., Zachwieja, Alexandra, Duangthongchit, Somoh, Sayavonkhamdy, Thongsa, Sichanthongtip, Phonephanh, Sihanam, Daovee, Souksavatdy, Viengkeo, Hublin, Jean-Jacques, and Tütken, Thomas
Published: 2020

14. Publisher Correction: Population genomics of post-glacial western Eurasia (Nature, (2024), 625, 7994, (301-311), 10.1038/s41586-023-06865-0)

Author: Allentoft, Morten, Sikora, Martin, Refoyo-Martínez, Alba, Irving-Pease, Evan, Fischer, Anders, Barrie, William, Ingason, Andrés, Stenderup, Jesper, Sjögren, Karl-Göran, Pearson, Alice, Sousa da Mota, Bárbara, Schulz Paulsson, Bettina, Halgren, Alma, Macleod, Ruairidh, Schjellerup Jørkov, Marie Louise, Demeter, Fabrice, Sørensen, Lasse, Nielsen, Poul Otto, Henriksen, Rasmus, Vimala, Tharsika, McColl, Hugh, Margaryan, Ashot, Ilardo, Melissa, Vaughn, Andrew, Mortensen, Morten Fischer, Nielsen, Anne Birgitte, Ulfeldt Hede, Mikkel, Johannsen, Niels Nørkjær, Rasmussen, Peter, Vinner, Lasse, Renaud, Gabriel, Stern, Aaron, Jensen, Theis, Scorrano, Gabriele, Schroeder, Hannes, Lysdahl, Per, Ramsøe, Abigail Daisy, Skorobogatov, Andrei, Schork, Andrew Joseph, Rosengren, Anders, Ruter, Anthony, Outram, Alan, Timoshenko, Aleksey, Buzhilova, Alexandra, Coppa, Alfredo, Zubova, Alisa, Silva, Ana Maria, Hansen, Anders, Gromov, Andrey, Logvin, Andrey, Gotfredsen, Anne Birgitte, Nielsen, Bjarne Henning, González-Rabanal, Borja, Lalueza-Fox, Carles, McKenzie, Catriona, Gaunitz, Charleen, Blasco, Concepción, Liesau, Corina, Martinez-Labarga, Cristina, Pozdnyakov, Dmitri, Cuenca-Solana, David, Lordkipanidze, David, En’shin, Dmitri, Salazar-García, Domingo, Price, Douglas, Borić, Dušan, Kostyleva, Elena, Veselovskaya, Elizaveta, Usmanova, Emma, Cappellini, Enrico, Petersen, Erik Brinch, Kannegaard, Esben, Radina, Francesca, Yediay, Fulya Eylem, Duday, Henri, Gutiérrez-Zugasti, Igor, Merts, Ilya, Potekhina, Inna, Shevnina, Irina, Altinkaya, Isin, Guilaine, Jean, Hansen, Jesper, Aura Tortosa, Joan Emili, Zilhão, João, Vega, Jorge, Buck Pedersen, Kristoffer, Tunia, Krzysztof, Zhao, Lei, Mylnikova, Liudmila, Larsson, Lars, Metz, Laure, Yepiskoposyan, Levon, Pedersen, Lisbeth, Sarti, Lucia, Orlando, Ludovic, Slimak, Ludovic, Klassen, Lutz, Blank, Malou, González-Morales, Manuel, Silvestrini, Mara, Vretemark, Maria, Nesterova, Marina, Rykun, Marina, Rolfo, Mario Federico, Szmyt, Marzena, Przybyła, Marcin, Calattini, Mauro, Sablin, Mikhail, Dobisíková, Miluše, Meldgaard, Morten, Johansen, Morten, Berezina, Natalia, Card, Nick, Saveliev, Nikolai, Poshekhonova, Olga, Rickards, Olga, Lozovskaya, Olga, Gábor, Olivér, Uldum, Otto Christian, Aurino, Paola, Kosintsev, Pavel, Courtaud, Patrice, Ríos, Patricia, Mortensen, Peder, Lotz, Per, Persson, Per, Bangsgaard, Pernille, Damgaard, Peter de Barros, Petersen, Peter Vang, Prieto Martínez, Pilar, Włodarczak, Piotr, Smolyaninov, Roman, Maring, Rikke, Menduiña, Roberto, Badalyan, Ruben, Iversen, Rune, Turin, Ruslan, Vasilyev, Sergey, Wåhlin, Sidsel, Borutskaya, Svetlana, Skochina, Svetlana, Sørensen, Søren Anker, Andersen, Søren, Jørgensen, Thomas, Serikov, Yuri, Molodin, Vyacheslav, Smrcka, Vaclav, Merts, Victor, Appadurai, Vivek, Moiseyev, Vyacheslav, Magnusson,Yvonne, Kjær, Kurt, Lynnerup, Niels, Lawson, Daniel, Sudmant, Peter, Rasmussen, Simon, Korneliussen, Thorfinn Sand, Durbin, Richard, Nielsen, Rasmus, Delanea, Olivier, Werge, Thomas, Racimo, Fernando, Kristiansen, Kristian, Willerslev, Eske, Allentoft, Morten, Sikora, Martin, Refoyo-Martínez, Alba, Irving-Pease, Evan, Fischer, Anders, Barrie, William, Ingason, Andrés, Stenderup, Jesper, Sjögren, Karl-Göran, Pearson, Alice, Sousa da Mota, Bárbara, Schulz Paulsson, Bettina, Halgren, Alma, Macleod, Ruairidh, Schjellerup Jørkov, Marie Louise, Demeter, Fabrice, Sørensen, Lasse, Nielsen, Poul Otto, Henriksen, Rasmus, Vimala, Tharsika, McColl, Hugh, Margaryan, Ashot, Ilardo, Melissa, Vaughn, Andrew, Mortensen, Morten Fischer, Nielsen, Anne Birgitte, Ulfeldt Hede, Mikkel, Johannsen, Niels Nørkjær, Rasmussen, Peter, Vinner, Lasse, Renaud, Gabriel, Stern, Aaron, Jensen, Theis, Scorrano, Gabriele, Schroeder, Hannes, Lysdahl, Per, Ramsøe, Abigail Daisy, Skorobogatov, Andrei, Schork, Andrew Joseph, Rosengren, Anders, Ruter, Anthony, Outram, Alan, Timoshenko, Aleksey, Buzhilova, Alexandra, Coppa, Alfredo, Zubova, Alisa, Silva, Ana Maria, Hansen, Anders, Gromov, Andrey, Logvin, Andrey, Gotfredsen, Anne Birgitte, Nielsen, Bjarne Henning, González-Rabanal, Borja, Lalueza-Fox, Carles, McKenzie, Catriona, Gaunitz, Charleen, Blasco, Concepción, Liesau, Corina, Martinez-Labarga, Cristina, Pozdnyakov, Dmitri, Cuenca-Solana, David, Lordkipanidze, David, En’shin, Dmitri, Salazar-García, Domingo, Price, Douglas, Borić, Dušan, Kostyleva, Elena, Veselovskaya, Elizaveta, Usmanova, Emma, Cappellini, Enrico, Petersen, Erik Brinch, Kannegaard, Esben, Radina, Francesca, Yediay, Fulya Eylem, Duday, Henri, Gutiérrez-Zugasti, Igor, Merts, Ilya, Potekhina, Inna, Shevnina, Irina, Altinkaya, Isin, Guilaine, Jean, Hansen, Jesper, Aura Tortosa, Joan Emili, Zilhão, João, Vega, Jorge, Buck Pedersen, Kristoffer, Tunia, Krzysztof, Zhao, Lei, Mylnikova, Liudmila, Larsson, Lars, Metz, Laure, Yepiskoposyan, Levon, Pedersen, Lisbeth, Sarti, Lucia, Orlando, Ludovic, Slimak, Ludovic, Klassen, Lutz, Blank, Malou, González-Morales, Manuel, Silvestrini, Mara, Vretemark, Maria, Nesterova, Marina, Rykun, Marina, Rolfo, Mario Federico, Szmyt, Marzena, Przybyła, Marcin, Calattini, Mauro, Sablin, Mikhail, Dobisíková, Miluše, Meldgaard, Morten, Johansen, Morten, Berezina, Natalia, Card, Nick, Saveliev, Nikolai, Poshekhonova, Olga, Rickards, Olga, Lozovskaya, Olga, Gábor, Olivér, Uldum, Otto Christian, Aurino, Paola, Kosintsev, Pavel, Courtaud, Patrice, Ríos, Patricia, Mortensen, Peder, Lotz, Per, Persson, Per, Bangsgaard, Pernille, Damgaard, Peter de Barros, Petersen, Peter Vang, Prieto Martínez, Pilar, Włodarczak, Piotr, Smolyaninov, Roman, Maring, Rikke, Menduiña, Roberto, Badalyan, Ruben, Iversen, Rune, Turin, Ruslan, Vasilyev, Sergey, Wåhlin, Sidsel, Borutskaya, Svetlana, Skochina, Svetlana, Sørensen, Søren Anker, Andersen, Søren, Jørgensen, Thomas, Serikov, Yuri, Molodin, Vyacheslav, Smrcka, Vaclav, Merts, Victor, Appadurai, Vivek, Moiseyev, Vyacheslav, Magnusson,Yvonne, Kjær, Kurt, Lynnerup, Niels, Lawson, Daniel, Sudmant, Peter, Rasmussen, Simon, Korneliussen, Thorfinn Sand, Durbin, Richard, Nielsen, Rasmus, Delanea, Olivier, Werge, Thomas, Racimo, Fernando, Kristiansen, Kristian, and Willerslev, Eske
Abstract: In the version of this article initially published, there were errors in the second affiliations for Levon Yepiskoposyan (Russian-Armenian University, Yerevan, Armenia) and Sergey Vasilyev (Center for Egyptological Studies, Russian Academy of Sciences, Moscow, Russian Federation), and in the first affiliation for Ruben Badalyan (Institute of Archaeology and Ethnography, National Academy of Sciences, Yerevan, Armenia); the affiliations are amended in the HTML and PDF versions of the article.
Published: 2024

15. Population genomics of post-glacial western Eurasia

Author: Allentoft, Morten E., Sikora, Martin, Refoyo-Martínez, Alba, Irving-Pease, Evan K., Fischer, Anders, Barrie, William, Ingason, Andrés, Stenderup, Jesper, Sjögren, Karl Göran, Pearson, Alice, Sousa da Mota, Bárbara, Schulz Paulsson, Bettina, Halgren, Alma, Macleod, Ruairidh, Jørkov, Marie Louise Schjellerup, Demeter, Fabrice, Sørensen, Lasse, Nielsen, Poul Otto, Henriksen, Rasmus A., Vimala, Tharsika, McColl, Hugh, Margaryan, Ashot, Ilardo, Melissa, Vaughn, Andrew, Fischer Mortensen, Morten, Nielsen, Anne Birgitte, Ulfeldt Hede, Mikkel, Johannsen, Niels Nørkjær, Rasmussen, Peter, Vinner, Lasse, Renaud, Gabriel, Stern, Aaron, Jensen, Theis Zetner Trolle, Scorrano, Gabriele, Schroeder, Hannes, Lysdahl, Per, Ramsøe, Abigail Daisy, Skorobogatov, Andrei, Schork, Andrew Joseph, Rosengren, Anders, Ruter, Anthony, Outram, Alan, Timoshenko, Aleksey A., Buzhilova, Alexandra, Coppa, Alfredo, Zubova, Alisa, Silva, Ana Maria, Hansen, Anders J., Gromov, Andrey, Logvin, Andrey, Gotfredsen, Anne Birgitte, Henning Nielsen, Bjarne, González-Rabanal, Borja, Lalueza-Fox, Carles, McKenzie, Catriona J., Gaunitz, Charleen, Blasco, Concepción, Liesau, Corina, Martinez-Labarga, Cristina, Pozdnyakov, Dmitri V., Cuenca-Solana, David, Lordkipanidze, David O., En’shin, Dmitri, Salazar-García, Domingo C., Price, T. Douglas, Borić, Dušan, Kostyleva, Elena, Veselovskaya, Elizaveta V., Usmanova, Emma R., Cappellini, Enrico, Brinch Petersen, Erik, Kannegaard, Esben, Radina, Francesca, Eylem Yediay, Fulya, Duday, Henri, Gutiérrez-Zugasti, Igor, Merts, Ilya, Potekhina, Inna, Shevnina, Irina, Altinkaya, Isin, Guilaine, Jean, Hansen, Jesper, Aura Tortosa, Joan Emili, Zilhão, João, Vega, Jorge, Buck Pedersen, Kristoffer, Tunia, Krzysztof, Zhao, Lei, Mylnikova, Liudmila N., Larsson, Lars, Metz, Laure, Yepiskoposyan, Levon, Pedersen, Lisbeth, Sarti, Lucia, Orlando, Ludovic, Slimak, Ludovic, Klassen, Lutz, Blank, Malou, González-Morales, Manuel, Silvestrini, Mara, Vretemark, Maria, Nesterova, Marina S., Rykun, Marina, Rolfo, Mario Federico, Szmyt, Marzena, Przybyła, Marcin, Calattini, Mauro, Sablin, Mikhail, Dobisíková, Miluše, Meldgaard, Morten, Johansen, Morten, Berezina, Natalia, Card, Nick, Saveliev, Nikolai A., Poshekhonova, Olga, Rickards, Olga, Lozovskaya, Olga V., Gábor, Olivér, Uldum, Otto Christian, Aurino, Paola, Kosintsev, Pavel, Courtaud, Patrice, Ríos, Patricia, Mortensen, Peder, Lotz, Per, Persson, Per, Bangsgaard, Pernille, de Barros Damgaard, Peter, Vang Petersen, Peter, Martinez, Pilar Prieto, Włodarczak, Piotr, Smolyaninov, Roman V., Maring, Rikke, Menduiña, Roberto, Badalyan, Ruben, Iversen, Rune, Turin, Ruslan, Vasilyev, Sergey, Wåhlin, Sidsel, Borutskaya, Svetlana, Skochina, Svetlana, Sørensen, Søren Anker, Andersen, Søren H., Jørgensen, Thomas, Serikov, Yuri B., Molodin, Vyacheslav I., Smrcka, Vaclav, Merts, Victor, Appadurai, Vivek, Moiseyev, Vyacheslav, Magnusson, Yvonne, Kjær, Kurt H., Lynnerup, Niels, Lawson, Daniel J., Sudmant, Peter H., Rasmussen, Simon, Korneliussen, Thorfinn Sand, Durbin, Richard, Nielsen, Rasmus, Delaneau, Olivier, Werge, Thomas, Racimo, Fernando, Kristiansen, Kristian, Willerslev, Eske, Allentoft, Morten E., Sikora, Martin, Refoyo-Martínez, Alba, Irving-Pease, Evan K., Fischer, Anders, Barrie, William, Ingason, Andrés, Stenderup, Jesper, Sjögren, Karl Göran, Pearson, Alice, Sousa da Mota, Bárbara, Schulz Paulsson, Bettina, Halgren, Alma, Macleod, Ruairidh, Jørkov, Marie Louise Schjellerup, Demeter, Fabrice, Sørensen, Lasse, Nielsen, Poul Otto, Henriksen, Rasmus A., Vimala, Tharsika, McColl, Hugh, Margaryan, Ashot, Ilardo, Melissa, Vaughn, Andrew, Fischer Mortensen, Morten, Nielsen, Anne Birgitte, Ulfeldt Hede, Mikkel, Johannsen, Niels Nørkjær, Rasmussen, Peter, Vinner, Lasse, Renaud, Gabriel, Stern, Aaron, Jensen, Theis Zetner Trolle, Scorrano, Gabriele, Schroeder, Hannes, Lysdahl, Per, Ramsøe, Abigail Daisy, Skorobogatov, Andrei, Schork, Andrew Joseph, Rosengren, Anders, Ruter, Anthony, Outram, Alan, Timoshenko, Aleksey A., Buzhilova, Alexandra, Coppa, Alfredo, Zubova, Alisa, Silva, Ana Maria, Hansen, Anders J., Gromov, Andrey, Logvin, Andrey, Gotfredsen, Anne Birgitte, Henning Nielsen, Bjarne, González-Rabanal, Borja, Lalueza-Fox, Carles, McKenzie, Catriona J., Gaunitz, Charleen, Blasco, Concepción, Liesau, Corina, Martinez-Labarga, Cristina, Pozdnyakov, Dmitri V., Cuenca-Solana, David, Lordkipanidze, David O., En’shin, Dmitri, Salazar-García, Domingo C., Price, T. Douglas, Borić, Dušan, Kostyleva, Elena, Veselovskaya, Elizaveta V., Usmanova, Emma R., Cappellini, Enrico, Brinch Petersen, Erik, Kannegaard, Esben, Radina, Francesca, Eylem Yediay, Fulya, Duday, Henri, Gutiérrez-Zugasti, Igor, Merts, Ilya, Potekhina, Inna, Shevnina, Irina, Altinkaya, Isin, Guilaine, Jean, Hansen, Jesper, Aura Tortosa, Joan Emili, Zilhão, João, Vega, Jorge, Buck Pedersen, Kristoffer, Tunia, Krzysztof, Zhao, Lei, Mylnikova, Liudmila N., Larsson, Lars, Metz, Laure, Yepiskoposyan, Levon, Pedersen, Lisbeth, Sarti, Lucia, Orlando, Ludovic, Slimak, Ludovic, Klassen, Lutz, Blank, Malou, González-Morales, Manuel, Silvestrini, Mara, Vretemark, Maria, Nesterova, Marina S., Rykun, Marina, Rolfo, Mario Federico, Szmyt, Marzena, Przybyła, Marcin, Calattini, Mauro, Sablin, Mikhail, Dobisíková, Miluše, Meldgaard, Morten, Johansen, Morten, Berezina, Natalia, Card, Nick, Saveliev, Nikolai A., Poshekhonova, Olga, Rickards, Olga, Lozovskaya, Olga V., Gábor, Olivér, Uldum, Otto Christian, Aurino, Paola, Kosintsev, Pavel, Courtaud, Patrice, Ríos, Patricia, Mortensen, Peder, Lotz, Per, Persson, Per, Bangsgaard, Pernille, de Barros Damgaard, Peter, Vang Petersen, Peter, Martinez, Pilar Prieto, Włodarczak, Piotr, Smolyaninov, Roman V., Maring, Rikke, Menduiña, Roberto, Badalyan, Ruben, Iversen, Rune, Turin, Ruslan, Vasilyev, Sergey, Wåhlin, Sidsel, Borutskaya, Svetlana, Skochina, Svetlana, Sørensen, Søren Anker, Andersen, Søren H., Jørgensen, Thomas, Serikov, Yuri B., Molodin, Vyacheslav I., Smrcka, Vaclav, Merts, Victor, Appadurai, Vivek, Moiseyev, Vyacheslav, Magnusson, Yvonne, Kjær, Kurt H., Lynnerup, Niels, Lawson, Daniel J., Sudmant, Peter H., Rasmussen, Simon, Korneliussen, Thorfinn Sand, Durbin, Richard, Nielsen, Rasmus, Delaneau, Olivier, Werge, Thomas, Racimo, Fernando, Kristiansen, Kristian, and Willerslev, Eske
Abstract: Western Eurasia witnessed several large-scale human migrations during the Holocene1–5. Here, to investigate the cross-continental effects of these migrations, we shotgun-sequenced 317 genomes—mainly from the Mesolithic and Neolithic periods—from across northern and western Eurasia. These were imputed alongside published data to obtain diploid genotypes from more than 1,600 ancient humans. Our analyses revealed a ‘great divide’ genomic boundary extending from the Black Sea to the Baltic. Mesolithic hunter-gatherers were highly genetically differentiated east and west of this zone, and the effect of the neolithization was equally disparate. Large-scale ancestry shifts occurred in the west as farming was introduced, including near-total replacement of hunter-gatherers in many areas, whereas no substantial ancestry shifts happened east of the zone during the same period. Similarly, relatedness decreased in the west from the Neolithic transition onwards, whereas, east of the Urals, relatedness remained high until around 4,000 bp, consistent with the persistence of localized groups of hunter-gatherers. The boundary dissolved when Yamnaya-related ancestry spread across western Eurasia around 5,000 bp, resulting in a second major turnover that reached most parts of Europe within a 1,000-year span. The genetic origin and fate of the Yamnaya have remained elusive, but we show that hunter-gatherers from the Middle Don region contributed ancestry to them. Yamnaya groups later admixed with individuals associated with the Globular Amphora culture before expanding into Europe. Similar turnovers occurred in western Siberia, where we report new genomic data from a ‘Neolithic steppe’ cline spanning the Siberian forest steppe to Lake Baikal. These prehistoric migrations had profound and lasting effects on the genetic diversity of Eurasian populations.
Published: 2024

16. 100 ancient genomes show repeated population turnovers in Neolithic Denmark

Author: Allentoft, Morten E., Sikora, Martin, Fischer, Anders, Sjögren, Karl Göran, Ingason, Andrés, Macleod, Ruairidh, Rosengren, Anders, Schulz Paulsson, Bettina, Jørkov, Marie Louise Schjellerup, Novosolov, Maria, Stenderup, Jesper, Price, T. Douglas, Fischer Mortensen, Morten, Nielsen, Anne Birgitte, Ulfeldt Hede, Mikkel, Sørensen, Lasse, Nielsen, Poul Otto, Rasmussen, Peter, Jensen, Theis Zetner Trolle, Refoyo-Martínez, Alba, Irving-Pease, Evan K., Barrie, William, Pearson, Alice, Sousa da Mota, Bárbara, Demeter, Fabrice, Henriksen, Rasmus A., Vimala, Tharsika, McColl, Hugh, Vaughn, Andrew, Vinner, Lasse, Renaud, Gabriel, Stern, Aaron, Johannsen, Niels Nørkjær, Ramsøe, Abigail Daisy, Schork, Andrew Joseph, Ruter, Anthony, Gotfredsen, Anne Birgitte, Henning Nielsen, Bjarne, Brinch Petersen, Erik, Kannegaard, Esben, Hansen, Jesper, Buck Pedersen, Kristoffer, Pedersen, Lisbeth, Klassen, Lutz, Meldgaard, Morten, Johansen, Morten, Uldum, Otto Christian, Lotz, Per, Lysdahl, Per, Bangsgaard, Pernille, Petersen, Peter Vang, Maring, Rikke, Iversen, Rune, Wåhlin, Sidsel, Anker Sørensen, Søren, Andersen, Søren H., Jørgensen, Thomas, Lynnerup, Niels, Lawson, Daniel J., Rasmussen, Simon, Korneliussen, Thorfinn Sand, Kjær, Kurt H., Durbin, Richard, Nielsen, Rasmus, Delaneau, Olivier, Werge, Thomas, Kristiansen, Kristian, Willerslev, Eske, Allentoft, Morten E., Sikora, Martin, Fischer, Anders, Sjögren, Karl Göran, Ingason, Andrés, Macleod, Ruairidh, Rosengren, Anders, Schulz Paulsson, Bettina, Jørkov, Marie Louise Schjellerup, Novosolov, Maria, Stenderup, Jesper, Price, T. Douglas, Fischer Mortensen, Morten, Nielsen, Anne Birgitte, Ulfeldt Hede, Mikkel, Sørensen, Lasse, Nielsen, Poul Otto, Rasmussen, Peter, Jensen, Theis Zetner Trolle, Refoyo-Martínez, Alba, Irving-Pease, Evan K., Barrie, William, Pearson, Alice, Sousa da Mota, Bárbara, Demeter, Fabrice, Henriksen, Rasmus A., Vimala, Tharsika, McColl, Hugh, Vaughn, Andrew, Vinner, Lasse, Renaud, Gabriel, Stern, Aaron, Johannsen, Niels Nørkjær, Ramsøe, Abigail Daisy, Schork, Andrew Joseph, Ruter, Anthony, Gotfredsen, Anne Birgitte, Henning Nielsen, Bjarne, Brinch Petersen, Erik, Kannegaard, Esben, Hansen, Jesper, Buck Pedersen, Kristoffer, Pedersen, Lisbeth, Klassen, Lutz, Meldgaard, Morten, Johansen, Morten, Uldum, Otto Christian, Lotz, Per, Lysdahl, Per, Bangsgaard, Pernille, Petersen, Peter Vang, Maring, Rikke, Iversen, Rune, Wåhlin, Sidsel, Anker Sørensen, Søren, Andersen, Søren H., Jørgensen, Thomas, Lynnerup, Niels, Lawson, Daniel J., Rasmussen, Simon, Korneliussen, Thorfinn Sand, Kjær, Kurt H., Durbin, Richard, Nielsen, Rasmus, Delaneau, Olivier, Werge, Thomas, Kristiansen, Kristian, and Willerslev, Eske
Abstract: Major migration events in Holocene Eurasia have been characterized genetically at broad regional scales1–4. However, insights into the population dynamics in the contact zones are hampered by a lack of ancient genomic data sampled at high spatiotemporal resolution5–7. Here, to address this, we analysed shotgun-sequenced genomes from 100 skeletons spanning 7,300 years of the Mesolithic period, Neolithic period and Early Bronze Age in Denmark and integrated these with proxies for diet (13C and 15N content), mobility (87Sr/86Sr ratio) and vegetation cover (pollen). We observe that Danish Mesolithic individuals of the Maglemose, Kongemose and Ertebølle cultures form a distinct genetic cluster related to other Western European hunter-gatherers. Despite shifts in material culture they displayed genetic homogeneity from around 10,500 to 5,900 calibrated years before present, when Neolithic farmers with Anatolian-derived ancestry arrived. Although the Neolithic transition was delayed by more than a millennium relative to Central Europe, it was very abrupt and resulted in a population turnover with limited genetic contribution from local hunter-gatherers. The succeeding Neolithic population, associated with the Funnel Beaker culture, persisted for only about 1,000 years before immigrants with eastern Steppe-derived ancestry arrived. This second and equally rapid population replacement gave rise to the Single Grave culture with an ancestry profile more similar to present-day Danes. In our multiproxy dataset, these major demographic events are manifested as parallel shifts in genotype, phenotype, diet and land use.
Published: 2024

17. Population genomics of post-glacial western Eurasia

Author: Lundbeck Foundation, Novo Nordisk Foundation, Wellcome Trust, Carlsberg Foundation, Danish National Research Foundation, University of Copenhagen, Ferring Pharmaceuticals, Swedish Foundation for Humanities and Social Sciences, Villum Fonden, Independent Research Fund Denmark, Hanne and Torkel Weis-Fogh Fund, Wellcome, Swiss National Science Foundation, European Research Council, Aarhus University Research Foundation, Ministry of Education and Science (Kazakhstan), Ministerio de Economía y Competitividad (España), Ministero dell'Istruzione, dell'Università e della Ricerca, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Generalitat Valenciana, Nomis Foundation, European Commission, Ministry of Science and Higher Education of the Russian Federation, Ministry of Education, Science, Culture and Sports of the Republic of Armenia, National Institute of General Medical Sciences (US), Sikora, Martin [0000-0003-2818-8319], Lalueza-Fox, Carles [0000-0002-1730-5914], Allentoft, Morten, Sikora, Martin, Refoyo-Martínez, Alba, Irving-Pease, Evan K., Fischer, Anders, Barrie, William, Ingason, Andrés, Stenderup, Jesper, Sjögren, Karl-Göran, Pearson, Alice, Mota, Bárbara Sousa da, Schulz Paulsson, Bettina, Halgren, Alma, Macleod, Ruairidh, Jørkov, Marie Louise S., Demeter, Fabrice, Sørensen, Lasse, Nielsen, Poul Otto, Henriksen, Rasmus A., Vimala, Tharsika, McColl, Hugh, Margaryan, Ashot, Ilardo, Melissa, Vaughn, Andrew, Fischer Mortensen, Morten, Nielsen, Anne Birgitte, Ulfeldt Hede, Mikkel, Johannsen, Niels Nørkjær, Rasmussen, Peter, Vinner, Lasse, Renaud, Gabriel, Stern, Aaron, Trolle Jensen, Theis Zetner, Scorrano, Gabriele, Schroeder, Hannes, Lysdahl, Per, Ramsøe, Abigail Daisy, Skorobogatov, Andrei, Schork, Andrew Joseph, Rosengren, Anders, Ruter, Anthony, Outram, Alan, Timoshenko, Aleksey A., Buzhilova, Alexandra, Coppa, Alfredo, Zubova, Alisa, Silva, Ana María, Hansen, Anders J., Gromov, Andrey, Logvin, Andrey, Gotfredsen, Anne Birgitte, Nielsen, Bjarne Henning, González-Rabanal, Borja, Lalueza-Fox, Carles, McKenzie, Catriona J., Gaunitz, Charleen, Blasco, Concepción, Liesau, Corina, Martínez-Labarga, Cristina, Pozdnyakov, Dmitri V., Cuenca-Solana, David, Lordkipanidze, David O., En’shin, Dmitri, Salazar García, Domingo Carlos, Price, T. Douglas, Borić, Dušan, Kostyleva, Elena, Veselovskaya, Elizaveta V., Usmanova, Emma R., Cappellini, Enrico, Petersen, Erik Brinch, Kannegaard, Esben, Radina, Francesca, Yediay, Fulya Eylem, Duday, Henri, Gutiérrez-Zugasti, Igor, Merts, Ilya, Potekhina, Inna, Shevnina, Irina, Altinkaya, Isin, Guilaine, Jean, Hansen, Jesper, Aura Tortosa, Joan Emili, Zilhão, João, Vega, Jorge, Pedersen, Kristoffer Buck, Tunia, Krzysztof, Zhao, Lei, Mylnikova, Liudmila N., Larsson, Lars, Metz, Laure, Yepiskoposyan, Levon, Pedersen, Lisbeth, Sarti, Lucia, Orlando, Ludovic, Slimak, Ludovic, Klassen, Lutz, Blank, Malou, González-Morales, Manuel, Silvestrini, Mara, Vretemark, Maria, Nesterova, Marina S., Rykun, Marina, Rolfo, Mario Federico, Szmyt, Marzena, Przybyła, Marcin, Calattini, Mauro, Sablin, Mikhail, Dobisíková, Miluše, Meldgaard, Morten, Johansen, Morten, Berezina, Natalia, Card, Nick, Saveliev, Nikolai A., Poshekhonova, Olga, Rickards, Olga, Lozovskaya, Olga V., Gábor, Olivér, Uldum, Otto Christian, Aurino, Paola, Kosintsev, Pavel, Courtaud, Patrice, Ríos, Patricia, Mortensen, Peder, Lotz, Per, Persson, Per, Bangsgaard, Pernille, Barros Damgaard, Peter de, Petersen, Peter Vang, Prieto Martínez, Pilar, Włodarczak, Piotr, Smolyaninov, Roman V., Maring, Rikke, Menduiña, Roberto, Badalyan, Ruben, Iversen, Rune, Turin, Ruslan, Vasilyev, Sergey, Wåhlin, Sidsel, Borutskaya, Svetlana, Skochina, Svetlana, Sørensen, Søren Anker, Andersen, Søren H., Jørgensen, Thomas, Serikov, Yuri B., Molodin, Vyacheslav I., Smrcka, Vaclav, Merts, Victor, Appadurai, Vivek, Moiseyev, Vyacheslav, Magnusson, Yvonne, Kjær, Kurt H., Lynnerup, Niels, Lawson, Daniel J., Sudmant, Peter H., Rasmussen, Simon, Korneliussen, Thorfinn Sand, Durbin, Richard, Nielsen, Rasmus, Delaneau, Olivier, Werge, Thomas, Racimo, Fernando, Kristiansen, Kristian, Willerslev, Eske, Lundbeck Foundation, Novo Nordisk Foundation, Wellcome Trust, Carlsberg Foundation, Danish National Research Foundation, University of Copenhagen, Ferring Pharmaceuticals, Swedish Foundation for Humanities and Social Sciences, Villum Fonden, Independent Research Fund Denmark, Hanne and Torkel Weis-Fogh Fund, Wellcome, Swiss National Science Foundation, European Research Council, Aarhus University Research Foundation, Ministry of Education and Science (Kazakhstan), Ministerio de Economía y Competitividad (España), Ministero dell'Istruzione, dell'Università e della Ricerca, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Generalitat Valenciana, Nomis Foundation, European Commission, Ministry of Science and Higher Education of the Russian Federation, Ministry of Education, Science, Culture and Sports of the Republic of Armenia, National Institute of General Medical Sciences (US), Sikora, Martin [0000-0003-2818-8319], Lalueza-Fox, Carles [0000-0002-1730-5914], Allentoft, Morten, Sikora, Martin, Refoyo-Martínez, Alba, Irving-Pease, Evan K., Fischer, Anders, Barrie, William, Ingason, Andrés, Stenderup, Jesper, Sjögren, Karl-Göran, Pearson, Alice, Mota, Bárbara Sousa da, Schulz Paulsson, Bettina, Halgren, Alma, Macleod, Ruairidh, Jørkov, Marie Louise S., Demeter, Fabrice, Sørensen, Lasse, Nielsen, Poul Otto, Henriksen, Rasmus A., Vimala, Tharsika, McColl, Hugh, Margaryan, Ashot, Ilardo, Melissa, Vaughn, Andrew, Fischer Mortensen, Morten, Nielsen, Anne Birgitte, Ulfeldt Hede, Mikkel, Johannsen, Niels Nørkjær, Rasmussen, Peter, Vinner, Lasse, Renaud, Gabriel, Stern, Aaron, Trolle Jensen, Theis Zetner, Scorrano, Gabriele, Schroeder, Hannes, Lysdahl, Per, Ramsøe, Abigail Daisy, Skorobogatov, Andrei, Schork, Andrew Joseph, Rosengren, Anders, Ruter, Anthony, Outram, Alan, Timoshenko, Aleksey A., Buzhilova, Alexandra, Coppa, Alfredo, Zubova, Alisa, Silva, Ana María, Hansen, Anders J., Gromov, Andrey, Logvin, Andrey, Gotfredsen, Anne Birgitte, Nielsen, Bjarne Henning, González-Rabanal, Borja, Lalueza-Fox, Carles, McKenzie, Catriona J., Gaunitz, Charleen, Blasco, Concepción, Liesau, Corina, Martínez-Labarga, Cristina, Pozdnyakov, Dmitri V., Cuenca-Solana, David, Lordkipanidze, David O., En’shin, Dmitri, Salazar García, Domingo Carlos, Price, T. Douglas, Borić, Dušan, Kostyleva, Elena, Veselovskaya, Elizaveta V., Usmanova, Emma R., Cappellini, Enrico, Petersen, Erik Brinch, Kannegaard, Esben, Radina, Francesca, Yediay, Fulya Eylem, Duday, Henri, Gutiérrez-Zugasti, Igor, Merts, Ilya, Potekhina, Inna, Shevnina, Irina, Altinkaya, Isin, Guilaine, Jean, Hansen, Jesper, Aura Tortosa, Joan Emili, Zilhão, João, Vega, Jorge, Pedersen, Kristoffer Buck, Tunia, Krzysztof, Zhao, Lei, Mylnikova, Liudmila N., Larsson, Lars, Metz, Laure, Yepiskoposyan, Levon, Pedersen, Lisbeth, Sarti, Lucia, Orlando, Ludovic, Slimak, Ludovic, Klassen, Lutz, Blank, Malou, González-Morales, Manuel, Silvestrini, Mara, Vretemark, Maria, Nesterova, Marina S., Rykun, Marina, Rolfo, Mario Federico, Szmyt, Marzena, Przybyła, Marcin, Calattini, Mauro, Sablin, Mikhail, Dobisíková, Miluše, Meldgaard, Morten, Johansen, Morten, Berezina, Natalia, Card, Nick, Saveliev, Nikolai A., Poshekhonova, Olga, Rickards, Olga, Lozovskaya, Olga V., Gábor, Olivér, Uldum, Otto Christian, Aurino, Paola, Kosintsev, Pavel, Courtaud, Patrice, Ríos, Patricia, Mortensen, Peder, Lotz, Per, Persson, Per, Bangsgaard, Pernille, Barros Damgaard, Peter de, Petersen, Peter Vang, Prieto Martínez, Pilar, Włodarczak, Piotr, Smolyaninov, Roman V., Maring, Rikke, Menduiña, Roberto, Badalyan, Ruben, Iversen, Rune, Turin, Ruslan, Vasilyev, Sergey, Wåhlin, Sidsel, Borutskaya, Svetlana, Skochina, Svetlana, Sørensen, Søren Anker, Andersen, Søren H., Jørgensen, Thomas, Serikov, Yuri B., Molodin, Vyacheslav I., Smrcka, Vaclav, Merts, Victor, Appadurai, Vivek, Moiseyev, Vyacheslav, Magnusson, Yvonne, Kjær, Kurt H., Lynnerup, Niels, Lawson, Daniel J., Sudmant, Peter H., Rasmussen, Simon, Korneliussen, Thorfinn Sand, Durbin, Richard, Nielsen, Rasmus, Delaneau, Olivier, Werge, Thomas, Racimo, Fernando, Kristiansen, Kristian, and Willerslev, Eske
Abstract: Western Eurasia witnessed several large-scale human migrations during the Holocene1,2,3,4,5. Here, to investigate the cross-continental effects of these migrations, we shotgun-sequenced 317 genomes—mainly from the Mesolithic and Neolithic periods—from across northern and western Eurasia. These were imputed alongside published data to obtain diploid genotypes from more than 1,600 ancient humans. Our analyses revealed a ‘great divide’ genomic boundary extending from the Black Sea to the Baltic. Mesolithic hunter-gatherers were highly genetically differentiated east and west of this zone, and the effect of the neolithization was equally disparate. Large-scale ancestry shifts occurred in the west as farming was introduced, including near-total replacement of hunter-gatherers in many areas, whereas no substantial ancestry shifts happened east of the zone during the same period. Similarly, relatedness decreased in the west from the Neolithic transition onwards, whereas, east of the Urals, relatedness remained high until around 4,000 BP, consistent with the persistence of localized groups of hunter-gatherers. The boundary dissolved when Yamnaya-related ancestry spread across western Eurasia around 5,000 BP, resulting in a second major turnover that reached most parts of Europe within a 1,000-year span. The genetic origin and fate of the Yamnaya have remained elusive, but we show that hunter-gatherers from the Middle Don region contributed ancestry to them. Yamnaya groups later admixed with individuals associated with the Globular Amphora culture before expanding into Europe. Similar turnovers occurred in western Siberia, where we report new genomic data from a ‘Neolithic steppe’ cline spanning the Siberian forest steppe to Lake Baikal. These prehistoric migrations had profound and lasting effects on the genetic diversity of Eurasian populations.
Published: 2024

18. Population genomics of post-glacial western Eurasia

Author: Allentoft, Morten, Sikora, Martin, Refoyo-Martínez, Alba, Irving-Pease, Evan, Fischer, Anders, Barrie, William, Ingason, Andrés, Stenderup, Jesper, Sjögren, Karl-Göran, Pearson, Alice, Sousa da Mota, Bárbara, Schulz Paulsson, Bettina, Halgren, Alma, Macleod, Ruairidh, Schjellerup Jørkov, Marie Louise, Demeter, Fabrice, Sørensen, Lasse, Nielsen, Poul Otto, Henriksen, Rasmus, Vimala, Tharsika, McColl, Hugh, Margaryan, Ashot, Ilardo, Melissa, Vaughn, Andrew, Mortensen, Morten Fischer, Nielsen, Anne Birgitte, Ulfeldt Hede, Mikkel, Johannsen, Niels Nørkjær, Rasmussen, Peter, Vinner, Lasse, Renaud, Gabriel, Stern, Aaron, Jensen, Theis, Scorrano, Gabriele, Schroeder, Hannes, Lysdahl, Per, Ramsøe, Abigail Daisy, Skorobogatov, Andrei, Schork, Andrew Joseph, Rosengren, Anders, Ruter, Anthony, Outram, Alan, Timoshenko, Aleksey, Buzhilova, Alexandra, Coppa, Alfredo, Zubova, Alisa, Silva, Ana Maria, Hansen, Anders, Gromov, Andrey, Logvin, Andrey, Gotfredsen, Anne Birgitte, Nielsen, Bjarne Henning, González-Rabanal, Borja, Lalueza-Fox, Carles, McKenzie, Catriona, Gaunitz, Charleen, Blasco, Concepción, Liesau, Corina, Martinez-Labarga, Cristina, Pozdnyakov, Dmitri, Cuenca-Solana, David, Lordkipanidze, David, En’shin, Dmitri, Salazar-García, Domingo, Price, Douglas, Borić, Dušan, Kostyleva, Elena, Veselovskaya, Elizaveta, Usmanova, Emma, Cappellini, Enrico, Petersen, Erik Brinch, Kannegaard, Esben, Radina, Francesca, Yediay, Fulya Eylem, Duday, Henri, Gutiérrez-Zugasti, Igor, Merts, Ilya, Potekhina, Inna, Shevnina, Irina, Altinkaya, Isin, Guilaine, Jean, Hansen, Jesper, Aura Tortosa, Joan Emili, Zilhão, João, Vega, Jorge, Buck Pedersen, Kristoffer, Tunia, Krzysztof, Zhao, Lei, Mylnikova, Liudmila, Larsson, Lars, Metz, Laure, Yepiskoposyan, Levon, Pedersen, Lisbeth, Sarti, Lucia, Orlando, Ludovic, Slimak, Ludovic, Klassen, Lutz, Blank, Malou, González-Morales, Manuel, Silvestrini, Mara, Vretemark, Maria, Nesterova, Marina, Rykun, Marina, Rolfo, Mario Federico, Szmyt, Marzena, Przybyła, Marcin, Calattini, Mauro, Sablin, Mikhail, Dobisíková, Miluše, Meldgaard, Morten, Johansen, Morten, Berezina, Natalia, Card, Nick, Saveliev, Nikolai, Poshekhonova, Olga, Rickards, Olga, Lozovskaya, Olga, Gábor, Olivér, Uldum, Otto Christian, Aurino, Paola, Kosintsev, Pavel, Courtaud, Patrice, Ríos, Patricia, Mortensen, Peder, Lotz, Per, Persson, Per, Bangsgaard, Pernille, Damgaard, Peter de Barros, Petersen, Peter Vang, Prieto Martínez, Pilar, Włodarczak, Piotr, Smolyaninov, Roman, Maring, Rikke, Menduiña, Roberto, Badalyan, Ruben, Iversen, Rune, Turin, Ruslan, Vasilyev, Sergey, Wåhlin, Sidsel, Borutskaya, Svetlana, Skochina, Svetlana, Sørensen, Søren Anker, Andersen, Søren, Jørgensen, Thomas, Serikov, Yuri, Molodin, Vyacheslav, Smrcka, Vaclav, Merts, Victor, Appadurai, Vivek, Moiseyev, Vyacheslav, Magnusson,Yvonne, Kjær, Kurt, Lynnerup, Niels, Lawson, Daniel, Sudmant, Peter, Rasmussen, Simon, Korneliussen, Thorfinn Sand, Durbin, Richard, Nielsen, Rasmus, Delanea, Olivier, Werge, Thomas, Racimo, Fernando, Kristiansen, Kristian, Willerslev, Eske, Allentoft, Morten, Sikora, Martin, Refoyo-Martínez, Alba, Irving-Pease, Evan, Fischer, Anders, Barrie, William, Ingason, Andrés, Stenderup, Jesper, Sjögren, Karl-Göran, Pearson, Alice, Sousa da Mota, Bárbara, Schulz Paulsson, Bettina, Halgren, Alma, Macleod, Ruairidh, Schjellerup Jørkov, Marie Louise, Demeter, Fabrice, Sørensen, Lasse, Nielsen, Poul Otto, Henriksen, Rasmus, Vimala, Tharsika, McColl, Hugh, Margaryan, Ashot, Ilardo, Melissa, Vaughn, Andrew, Mortensen, Morten Fischer, Nielsen, Anne Birgitte, Ulfeldt Hede, Mikkel, Johannsen, Niels Nørkjær, Rasmussen, Peter, Vinner, Lasse, Renaud, Gabriel, Stern, Aaron, Jensen, Theis, Scorrano, Gabriele, Schroeder, Hannes, Lysdahl, Per, Ramsøe, Abigail Daisy, Skorobogatov, Andrei, Schork, Andrew Joseph, Rosengren, Anders, Ruter, Anthony, Outram, Alan, Timoshenko, Aleksey, Buzhilova, Alexandra, Coppa, Alfredo, Zubova, Alisa, Silva, Ana Maria, Hansen, Anders, Gromov, Andrey, Logvin, Andrey, Gotfredsen, Anne Birgitte, Nielsen, Bjarne Henning, González-Rabanal, Borja, Lalueza-Fox, Carles, McKenzie, Catriona, Gaunitz, Charleen, Blasco, Concepción, Liesau, Corina, Martinez-Labarga, Cristina, Pozdnyakov, Dmitri, Cuenca-Solana, David, Lordkipanidze, David, En’shin, Dmitri, Salazar-García, Domingo, Price, Douglas, Borić, Dušan, Kostyleva, Elena, Veselovskaya, Elizaveta, Usmanova, Emma, Cappellini, Enrico, Petersen, Erik Brinch, Kannegaard, Esben, Radina, Francesca, Yediay, Fulya Eylem, Duday, Henri, Gutiérrez-Zugasti, Igor, Merts, Ilya, Potekhina, Inna, Shevnina, Irina, Altinkaya, Isin, Guilaine, Jean, Hansen, Jesper, Aura Tortosa, Joan Emili, Zilhão, João, Vega, Jorge, Buck Pedersen, Kristoffer, Tunia, Krzysztof, Zhao, Lei, Mylnikova, Liudmila, Larsson, Lars, Metz, Laure, Yepiskoposyan, Levon, Pedersen, Lisbeth, Sarti, Lucia, Orlando, Ludovic, Slimak, Ludovic, Klassen, Lutz, Blank, Malou, González-Morales, Manuel, Silvestrini, Mara, Vretemark, Maria, Nesterova, Marina, Rykun, Marina, Rolfo, Mario Federico, Szmyt, Marzena, Przybyła, Marcin, Calattini, Mauro, Sablin, Mikhail, Dobisíková, Miluše, Meldgaard, Morten, Johansen, Morten, Berezina, Natalia, Card, Nick, Saveliev, Nikolai, Poshekhonova, Olga, Rickards, Olga, Lozovskaya, Olga, Gábor, Olivér, Uldum, Otto Christian, Aurino, Paola, Kosintsev, Pavel, Courtaud, Patrice, Ríos, Patricia, Mortensen, Peder, Lotz, Per, Persson, Per, Bangsgaard, Pernille, Damgaard, Peter de Barros, Petersen, Peter Vang, Prieto Martínez, Pilar, Włodarczak, Piotr, Smolyaninov, Roman, Maring, Rikke, Menduiña, Roberto, Badalyan, Ruben, Iversen, Rune, Turin, Ruslan, Vasilyev, Sergey, Wåhlin, Sidsel, Borutskaya, Svetlana, Skochina, Svetlana, Sørensen, Søren Anker, Andersen, Søren, Jørgensen, Thomas, Serikov, Yuri, Molodin, Vyacheslav, Smrcka, Vaclav, Merts, Victor, Appadurai, Vivek, Moiseyev, Vyacheslav, Magnusson,Yvonne, Kjær, Kurt, Lynnerup, Niels, Lawson, Daniel, Sudmant, Peter, Rasmussen, Simon, Korneliussen, Thorfinn Sand, Durbin, Richard, Nielsen, Rasmus, Delanea, Olivier, Werge, Thomas, Racimo, Fernando, Kristiansen, Kristian, and Willerslev, Eske
Abstract: Western Eurasia witnessed several large-scale human migrations during the Holocene1–5. Here, to investigate the cross-continental effects of these migrations, we shotgun-sequenced 317 genomes—mainly from the Mesolithic and Neolithic periods— from across northern and western Eurasia. These were imputed alongside published data to obtain diploid genotypes from more than 1,600 ancient humans. Our analyses revealed a ‘great divide’ genomic boundary extending from the Black Sea to the Baltic. Mesolithic hunter-gatherers were highly genetically differentiated east and west of this zone, and the effect of the neolithization was equally disparate. Large-scale ancestry shifts occurred in the west as farming was introduced, including near-total replacement of hunter-gatherers in many areas, whereas no substantial ancestry shifts happened east of the zone during the same period. Similarly, relatedness decreased in the west from the Neolithic transition onwards, whereas, east of the Urals, relatedness remained high until around 4,000 bp, consistent with the persistence of localized groups of hunter-gatherers. The boundary dissolved when Yamnaya-related ancestry spread across western Eurasia around 5,000 bp, resulting in a second major turnover that reached most parts of Europe within a 1,000-year span. The genetic origin and fate of the Yamnaya have remained elusive, but we show that hunter-gatherers from the Middle Don region contributed ancestry to them. Yamnaya groups later admixed with individuals associated with the Globular Amphora culture before expanding into Europe. Similar turnovers occurred in western Siberia, where we report new genomic data from a ‘Neolithic steppe’ cline spanning the Siberian forest steppe to Lake Baikal. These prehistoric migrations had profound and lasting effects on the genetic diversity of Eurasian populations.
Published: 2024

19. Understanding Late Pleistocene human land preference using ecological niche models in an Australasian test case

Author: Zachwieja, Alexandra J., Bacon, Anne-Marie, Nguyen, Thi Mai Huong, Nguyen, Anh Tuan, Westaway, Kira, Duringer, Philippe, Ponche, Jean-Luc, Patole-Edoumba, Élise, Sichanthongtip, Phonephanh, Sayavongkhamdy, Thongsa, Dunn, Tyler E., Demeter, Fabrice, and Shackelford, Laura L.
Published: 2020
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20. Linear enamel hypoplasia in large-bodied mammals of Pleistocene northern Vietnam, with a special focus on Pongo

Author: Bacon, Anne-Marie, Antoine, Pierre-Olivier, Nguyen, Thi Mai Huong, Westaway, Kira, Zhao, Jian-xin, Nguyen, Anh Tuan, Duringer, Philippe, Ponche, Jean-Luc, Sam, Canh Dung, Truong, Huu Nghia, Tran, Thi Minh, Nguyen, Thi Kim Thuy, Pham, Thanh Son, and Demeter, Fabrice
Published: 2020
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21. A multi-proxy approach to exploring Homo sapiens’ arrival, environments and adaptations in Southeast Asia

Author: Bacon, Anne-Marie, Bourgon, Nicolas, Welker, Frido, Cappellini, Enrico, Fiorillo, Denis, Tombret, Olivier, Thi Mai Huong, Nguyen, Anh Tuan, Nguyen, Sayavonkhamdy, Thongsa, Souksavatdy, Viengkeo, Sichanthongtip, Phonephanh, Antoine, Pierre-Olivier, Duringer, Philippe, Ponche, Jean-Luc, Westaway, Kira, Joannes-Boyau, Renaud, Boesch, Quentin, Suzzoni, Eric, Frangeul, Sébastien, Patole-Edoumba, Elise, Zachwieja, Alexandra, Shackelford, Laura, Demeter, Fabrice, Hublin, Jean-Jacques, and Dufour, Élise
Published: 2021
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22. Enamel proteome shows that Gigantopithecus was an early diverging pongine

Author: Welker, Frido, Ramos-Madrigal, Jazmín, Kuhlwilm, Martin, Liao, Wei, Gutenbrunner, Petra, de Manuel, Marc, Samodova, Diana, Mackie, Meaghan, Allentoft, Morten E., Bacon, Anne-Marie, Collins, Matthew J., Cox, Jürgen, Lalueza-Fox, Carles, Olsen, Jesper V., Demeter, Fabrice, Wang, Wei, Marques-Bonet, Tomas, and Cappellini, Enrico
Published: 2019
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23. Nam Lot (MIS 5) and Duoi U'Oi (MIS 4) Southeast Asian sites revisited: Zooarchaeological and isotopic evidences

Author: Bacon, Anne-Marie, Bourgon, Nicolas, Dufour, Elise, Zanolli, Clément, Duringer, Philippe, Ponche, Jean-Luc, Antoine, Pierre-Olivier, Shackelford, Laura, Huong, Nguyen Thi Mai, Sayavonkhamdy, Thongsa, Patole-Edoumba, Elise, and Demeter, Fabrice
Published: 2018
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24. Environmental conditions framing the first evidence of modern humans at Tam Pà Ling, Laos: A stable isotope record from terrestrial gastropod carbonates

Author: Milano, Stefania, Demeter, Fabrice, Hublin, Jean-Jacques, Duringer, Philippe, Patole-Edoumba, Elise, Ponche, Jean-Luc, Shackelford, Laura, Boesch, Quentin, Houng, Nguyen Thi Mai, Lan, Luu Thi Phoung, Duangthongchit, Somoh, Sayavonkhamdy, Thongsa, Sichanthongtip, Phonephanh, Sihanam, Daovee, Souksavatdy, Viengkeo, Westaway, Kira, and Bacon, Anne-Marie
Published: 2018
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25. The prehistoric peopling of Southeast Asia

Author: McColl, Hugh, Racimo, Fernando, Vinner, Lasse, Demeter, Fabrice, Gakuhari, Takashi, Moreno-Mayar, J. Víctor, van Driem, George, Wilken, Uffe Gram, Seguin-Orlando, Andaine, de la Fuente Castro, Constanza, Wasef, Sally, Shoocongdej, Rasmi, Souksavatdy, Viengkeo, Sayavongkhamdy, Thongsa, Saidin, Mohd Mokhtar, 11, Morten E. Allentoft, Sato, Takehiro, Malaspinas, Anna-Sapfo, Aghakhanian, Farhang A., Korneliussen, Thorfinn, Prohaska, Ana, Margaryan, Ashot, de Barros Damgaard, Peter, Kaewsutthi, Supannee, Lertrit, Patcharee, Nguyen, Thi Mai Huong, Hung, Hsiao-chun, Tran, Thi Minh, Truong, Huu Nghia, Nguyen, Giang Hai, Shahidan, Shaiful, Wiradnyana, Ketut, Matsumae, Hiromi, Shigehara, Nobuo, Yoneda, Minoru, Ishida, Hajime, Masuyama, Tadayuki, Yamada, Yasuhiro, Tajima, Atsushi, Shibata, Hiroki, Toyoda, Atsushi, Hanihara, Tsunehiko, Nakagome, Shigeki, Deviese, Thibaut, Bacon, Anne-Marie, Duringer, Philippe, Ponche, Jean-Luc, Shackelford, Laura, Patole-Edoumba, Elise, Nguyen, Anh Tuan, Bellina-Pryce, Bérénice, Galipaud, Jean-Christophe, Kinaston, Rebecca, Buckley, Hallie, Pottier, Christophe, Rasmussen, Simon, Higham, Tom, Foley, Robert A., Lahr, Marta Mirazón, Orlando, Ludovic, Sikora, Martin, Phipps, Maude E., Oota, Hiroki, Higham, Charles, Lambert, David M., and Willerslev, Eske
Published: 2018

26. Early Modern Humans from Tam Pà Ling, Laos : Fossil Review and Perspectives

Author: Demeter, Fabrice, Shackelford, Laura, Westaway, Kira, Barnes, Lani, Duringer, Philippe, Ponche, Jean-Luc, Dumoncel, Jean, Sénégas, Frank, Sayavongkhamdy, Thongsa, Zhao, Jian-Xin, Sichanthongtip, Phonephanh, Patole-Edoumba, Elise, Dunn, Tyler, Zachwieja, Alexandra, Coppens, Yves, Willerslev, Eske, and Bacon, Anne-Marie
Published: 2017

27. Additional evidence for early modern human morphological diversity in Southeast Asia at Tam Pa Ling, Laos

Author: Shackelford, Laura, Demeter, Fabrice, Westaway, Kira, Duringer, Philippe, Ponche, Jean-Luc, Sayavongkhamdy, Thongsa, Zhao, Jian-Xin, Barnes, Lani, Boyon, Marc, Sichanthongtip, Phonephanh, Sénégas, Frank, Patole-Edoumba, Elise, Coppens, Yves, Dumoncel, Jean, and Bacon, Anne-Marie
Published: 2018
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28. Testing the savannah corridor hypothesis during MIS2: The Boh Dambang hyena site in southern Cambodia

Author: Bacon, Anne-Marie, Duringer, Philippe, Westaway, Kira, Joannes-Boyau, Renaud, Zhao, Jian-xin, Bourgon, Nicolas, Dufour, Elise, Pheng, Sytha, Tep, Sokha, Ponche, Jean-Luc, Barnes, Lani, Blin, Amandine, Patole-Edoumba, Elise, and Demeter, Fabrice
Published: 2018
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29. Evidence for increased hominid diversity in the Early to Middle Pleistocene of Indonesia

Author: Zanolli, Clément, Kullmer, Ottmar, Kelley, Jay, Bacon, Anne-Marie, Demeter, Fabrice, Dumoncel, Jean, Fiorenza, Luca, Grine, Frederick E., Hublin, Jean-Jacques, Nguyen, Anh Tuan, Nguyen, Thi Mai Huong, Pan, Lei, Schillinger, Burkhard, Schrenk, Friedemann, Skinner, Matthew M., Ji, Xueping, and Macchiarelli, Roberto
Published: 2019
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30. Geometric morphometrics and paleoproteomics enlighten the paleodiversity of Pongo.

Author: Kubat, Jülide, Paterson, Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marques-Bonet, Tomas, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, and Cappellini, Enrico
Subjects: ORANGUTANS, TANDEM mass spectrometry, AMELOBLASTS, MORPHOMETRICS, DENTIN, PLEISTOCENE Epoch
Abstract: Pleistocene Pongo teeth show substantial variation in size and morphology, fueling taxonomic debates about the paleodiversity of the genus. We investigated prominent features of the enamel-dentine-junction junction (EDJ)–phylogenetically informative internal structures–of 71 fossil Pongo lower molars from various sites by applying geometric morphometrics and conducted paleoproteomic analyses from enamel proteins to attempt to identify extinct orangutan species. Forty-three orangutan lower molars representing Pongo pygmaeus and Pongo abelii were included for comparison. The shape of the EDJ was analyzed by placing five landmarks on the tip of the main dentine horns, and 142 semilandmarks along the marginal ridges connecting the dentine horns. Paleoproteomic analyses were conducted on 15 teeth of Late Pleistocene Pongo using high-resolution tandem mass spectrometry. The geometric morphometric results show variations in EDJ shape regarding aspects of the height and position of the dentine horns and connecting ridges. Despite the issue of molar position and sample size, modern molars are distinguished from fossil counterparts by their elongated tooth outline and narrowly positioned dentine horns. Proteomic results show that neither a distinction of P. pygmaeus and P. abelii, nor a consistent allocation of fossil specimens to extant species is feasible. Based on the EDJ shape, the (late) Middle to Late Pleistocene Pongo samples from Vietnam share the same morphospace, supporting the previous allocation to P. devosi, although substantial overlap with Chinese fossils could also indicate close affinities with P. weidenreichi. The hypothesis that both species represent one chronospecies cannot be ruled out. Two fossil specimens, one from Tam Hay Marklot (Laos, Late Pleistocene), and another from Sangiran (Java, Early to Middle Pleistocene), along with some specimens within the Punung sample (Java), exhibit affinities with Pongo abelii. The Punung fossils might represent a mix of early Late Pleistocene and later specimens (terminal Pleistocene to Holocene) related to modern Pongo. The taxonomy and phylogeny of the complete Punung sample needs to be further investigated. [ABSTRACT FROM AUTHOR]
Published: 2023
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31. Cross-validated classification results in frequencies based on M3

Author: Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, Bacon, Anne-Marie, Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, and Bacon, Anne-Marie
Published: 2023

32. Geometric morphometrics and paleoproteomics enlighten the paleodiversity of Pongo

Author: European Commission, Centre National de la Recherche Scientifique (France), Marqués-Bonet, Tomàs [0000-0002-5597-3075], Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, Bacon, Anne-Marie, European Commission, Centre National de la Recherche Scientifique (France), Marqués-Bonet, Tomàs [0000-0002-5597-3075], Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, and Bacon, Anne-Marie
Abstract: Pleistocene Pongo teeth show substantial variation in size and morphology, fueling taxonomic debates about the paleodiversity of the genus. We investigated prominent features of the enamel-dentine-junction junction (EDJ)–phylogenetically informative internal structures–of 71 fossil Pongo lower molars from various sites by applying geometric morphometrics and conducted paleoproteomic analyses from enamel proteins to attempt to identify extinct orangutan species. Forty-three orangutan lower molars representing Pongo pygmaeus and Pongo abelii were included for comparison. The shape of the EDJ was analyzed by placing five landmarks on the tip of the main dentine horns, and 142 semilandmarks along the marginal ridges connecting the dentine horns. Paleoproteomic analyses were conducted on 15 teeth of Late Pleistocene Pongo using high-resolution tandem mass spectrometry. The geometric morphometric results show variations in EDJ shape regarding aspects of the height and position of the dentine horns and connecting ridges. Despite the issue of molar position and sample size, modern molars are distinguished from fossil counterparts by their elongated tooth outline and narrowly positioned dentine horns. Proteomic results show that neither a distinction of P. pygmaeus and P. abelii, nor a consistent allocation of fossil specimens to extant species is feasible. Based on the EDJ shape, the (late) Middle to Late Pleistocene Pongo samples from Vietnam share the same morphospace, supporting the previous allocation to P. devosi, although substantial overlap with Chinese fossils could also indicate close affinities with P. weidenreichi. The hypothesis that both species represent one chronospecies cannot be ruled out. Two fossil specimens, one from Tam Hay Marklot (Laos, Late Pleistocene), and another from Sangiran (Java, Early to Middle Pleistocene), along with some specimens within the Punung sample (Java), exhibit affinities with Pongo abelii. The Punung fossils might represent a mi
Published: 2023

33. S6 Fig

Author: Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, Bacon, Anne-Marie, Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, and Bacon, Anne-Marie
Published: 2023

34. List of specimens used in the present study

Author: Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, Bacon, Anne-Marie, Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, and Bacon, Anne-Marie
Abstract: Pleistocene Pongo teeth show substantial variation in size and morphology, fueling taxonomic debates about the paleodiversity of the genus. We investigated prominent features of the enamel-dentine-junction junction (EDJ)–phylogenetically informative internal structures–of 71 fossil Pongo lower molars from various sites by applying geometric morphometrics and conducted paleoproteomic analyses from enamel proteins to attempt to identify extinct orangutan species. Forty-three orangutan lower molars representing Pongo pygmaeus and Pongo abelii were included for comparison. The shape of the EDJ was analyzed by placing five landmarks on the tip of the main dentine horns, and 142 semilandmarks along the marginal ridges connecting the dentine horns. Paleoproteomic analyses were conducted on 15 teeth of Late Pleistocene Pongo using high-resolution tandem mass spectrometry. The geometric morphometric results show variations in EDJ shape regarding aspects of the height and position of the dentine horns and connecting ridges. Despite the issue of molar position and sample size, modern molars are distinguished from fossil counterparts by their elongated tooth outline and narrowly positioned dentine horns. Proteomic results show that neither a distinction of P. pygmaeus and P. abelii, nor a consistent allocation of fossil specimens to extant species is feasible. Based on the EDJ shape, the (late) Middle to Late Pleistocene Pongo samples from Vietnam share the same morphospace, supporting the previous allocation to P. devosi, although substantial overlap with Chinese fossils could also indicate close affinities with P. weidenreichi. The hypothesis that both species represent one chronospecies cannot be ruled out. Two fossil specimens, one from Tam Hay Marklot (Laos, Late Pleistocene), and another from Sangiran (Java, Early to Middle Pleistocene), along with some specimens within the Punung sample (Java), exhibit affinities with Pongo abelii. The Punung fossils might represent a mi
Published: 2023

35. S1 Data

Author: Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, Bacon, Anne-Marie, Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, and Bacon, Anne-Marie
Published: 2023

36. Summary statistics of paleoproteomic analyses

Author: Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, Bacon, Anne-Marie, Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, and Bacon, Anne-Marie
Published: 2023

37. Cross-validated classification results in frequencies based on M1–M2

Author: Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, Bacon, Anne-Marie, Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, and Bacon, Anne-Marie
Published: 2023

38. Cross-validated classification results in percentages based on M3

Author: Marqués-Bonet, Tomàs [0000-0002-5597-3075], Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, Bacon, Anne-Marie, Marqués-Bonet, Tomàs [0000-0002-5597-3075], Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, and Bacon, Anne-Marie
Published: 2023

39. Cross-validated classification results in percentages based on M1–M2

Author: Marqués-Bonet, Tomàs [0000-0002-5597-3075], Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, Bacon, Anne-Marie, Marqués-Bonet, Tomàs [0000-0002-5597-3075], Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, and Bacon, Anne-Marie
Published: 2023

40. Molar type assignments

Author: Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, Bacon, Anne-Marie, Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, and Bacon, Anne-Marie
Published: 2023

41. Palaeoproteomic phylogenetic analysis

Author: Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, Bacon, Anne-Marie, Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, and Bacon, Anne-Marie
Published: 2023

42. Cross-validated CVA of the EDJ based on all molar positions combined

Author: Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, Bacon, Anne-Marie, Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, and Bacon, Anne-Marie
Published: 2023

43. CVA of the EDJ based on all molar positions combined

Author: Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, Bacon, Anne-Marie, Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, and Bacon, Anne-Marie
Published: 2023

44. Maximum likelihood phylogenetic tree

Author: Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, Bacon, Anne-Marie, Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, and Bacon, Anne-Marie
Published: 2023

45. Semilandmark coordinates for each specimen used in this study

Author: Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, Bacon, Anne-Marie, Kubat, Jülide, Paterson Ryan, Patramanis, Ioannis, Barker, Graeme, Demeter, Fabrice, Filoux, Arnaud, Kullmer, Ottmar, Mackie, Meaghan, Marqués-Bonet, Tomàs, Huong, Nguyen Thi Mai, Tuan, Nguyen Anh, Pheng, Sytha, Rippengal, Jessica, Schrenk, Friedemann, Souksavatdy, Viengkeo, Tshen, Lim Tze, Wattanapituksakul, Athiwat, Wang, Wei, Zanolli, Clément, Cappellini, Enrico, and Bacon, Anne-Marie
Published: 2023

46. The effect of grain size on carbonate contaminant removal from tooth enamel: Towards an improved pretreatment for radiocarbon dating

Author: Wood, Rachel, Duval, Mathieu, Mai Huong, Nguyen Thi, Tuan, Nguyen Anh, Bacon, Anne-Marie, Demeter, Fabrice, Duringer, Philippe, Oxenham, Marc, and Piper, Philip
Published: 2016
Full Text: View/download PDF

47. Early presence of Homo sapiens by 86-68 kyrs in Southeast Asia at Tam Pà Ling cave, Northern Laos.

Author: Freidline, Sarah, primary, Westaway, Kira, additional, Joannes-Boyau, Renaud, additional, Duringer, Philippe, additional, Ponche, Jean-Luc, additional, Morley, Mike, additional, Hernandez, Vito Paolo, additional, McAllister-Hayward, Meghan, additional, McColl, Hugh, additional, Zanolli, Clément, additional, Gunz, Philipp, additional, Bergmann, Inga, additional, Sichanthongtip, Phonephanh, additional, Sihanam, Daovee, additional, Boualaphane, Souliphane, additional, Luangkhoth, Thonglith, additional, Souksavatdy, Viengkeo, additional, Dosseto, Anthony, additional, Boesch, Quentin, additional, Patole-Edoumba, Elise, additional, Aubaile, Françoise, additional, Crozier, Françoise, additional, Suzzoni, Eric, additional, Frangeul, Sébastien, additional, Bourgon, Nicolas, additional, Zachwieja, Alexandra, additional, Dunn, Tyler, additional, Bacon, Anne-Marie, additional, Hublin, Jean-Jacques, additional, Shackelford, Laura, additional, and Demeter, Fabrice, additional
Published: 2023
Full Text: View/download PDF

48. Late Pleistocene mammalian assemblages of Southeast Asia: New dating, mortality profiles and evolution of the predator–prey relationships in an environmental context

Author: Bacon, Anne-Marie, Westaway, Kira, Antoine, Pierre-Olivier, Duringer, Philippe, Blin, Amandine, Demeter, Fabrice, Ponche, Jean-Luc, Zhao, Jian-Xin, Barnes, Lani Minnie, Sayavonkhamdy, Thongsa, Thuy, Nguyen Thi Kim, Long, Vu The, Patole-Edoumba, Elise, and Shackelford, Laura
Published: 2015
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49. Genetic risk for Multiple Sclerosis originated in Pastoralist Steppe populations

Author: Barrie, William, primary, Yang, Yaoling, additional, Attfield, Kathrine E., additional, Irving-Pease, Evan, additional, Scorrano, Gabriele, additional, Jensen, Lise Torp, additional, Armen, Angelos P., additional, Dimopoulos, Evangelos Antonios, additional, Stern, Aaron, additional, Refoyo-Martinez, Alba, additional, Ramsøe, Abigail, additional, Gaunitz, Charleen, additional, Demeter, Fabrice, additional, Jørkov, Marie Louise S., additional, Møller, Stig Bermann, additional, Springborg, Bente, additional, Klassen, Lutz, additional, Hyldgård, Inger Marie, additional, Wickmann, Niels, additional, Vinner, Lasse, additional, Korneliussen, Thorfinn Sand, additional, Sikora, Martin, additional, Kristiansen, Kristian, additional, Rodriguez, Santiago, additional, Nielsen, Rasmus, additional, Iversen, Astrid K. N., additional, Lawson, Daniel J., additional, Fugger, Lars, additional, and Willerslev, Eske, additional
Published: 2022
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50. The Selection Landscape and Genetic Legacy of Ancient Eurasians

Author: Irving-Pease, Evan K., primary, Refoyo-Martínez, Alba, additional, Ingason, Andrés, additional, Pearson, Alice, additional, Fischer, Anders, additional, Barrie, William, additional, Sjögren, Karl-Göran, additional, Halgren, Alma S., additional, Macleod, Ruairidh, additional, Demeter, Fabrice, additional, Henriksen, Rasmus A., additional, Vimala, Tharsika, additional, McColl, Hugh, additional, Vaughn, Andrew, additional, Stern, Aaron J., additional, Speidel, Leo, additional, Scorrano, Gabriele, additional, Ramsøe, Abigail, additional, Schork, Andrew J., additional, Rosengren, Anders, additional, Zhao, Lei, additional, Kristiansen, Kristian, additional, Sudmant, Peter H., additional, Lawson, Daniel J., additional, Durbin, Richard, additional, Korneliussen, Thorfinn, additional, Werge, Thomas, additional, Allentoft, Morten E., additional, Sikora, Martin, additional, Nielsen, Rasmus, additional, Racimo, Fernando, additional, and Willerslev, Eske, additional
Published: 2022
Full Text: View/download PDF

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