475 results on '"E, Vignon"'
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2. Variance-based loss function for improved regularization.
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John M. Hanna and Irene E. Vignon-Clementel
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- 2024
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3. Enhancing the automatic segmentation and analysis of 3D liver vasculature models.
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Yassine Machta, Omar Ali, Kevin Hakkakian, Ana Vlasceanu, Amaury Facque, Nicolas Golse, and Irene E. Vignon-Clementel
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- 2024
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4. A comparative analysis of metamodels for lumped cardiovascular models, and pipeline for sensitivity analysis, parameter estimation, and uncertainty quantification.
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John M. Hanna, Pavlos Varsos, Jérôme Kowalski, Lorenzo Sala, Roel Meiburg, and Irene E. Vignon-Clementel
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- 2024
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5. Learning to Jointly Segment the Liver, Lesions and Vessels from Partially Annotated Datasets.
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Omar Ali, Alexandre Bône, Marc-Michel Rohé, Eric Vibert, and Irene E. Vignon-Clementel
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- 2022
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6. CoRe: An Automated Pipeline for the Prediction of Liver Resection Complexity from Preoperative CT Scans.
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Omar Ali, Alexandre Bône, Caterina Accardo, Omar Belkouchi, Marc-Michel Rohé, Eric Vibert, and Irene E. Vignon-Clementel
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- 2022
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7. GABLS4 intercomparison of snow models at Dome C in Antarctica
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P. Le Moigne, E. Bazile, A. Cheng, E. Dutra, J. M. Edwards, W. Maurel, I. Sandu, O. Traullé, E. Vignon, A. Zadra, and W. Zheng
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Environmental sciences ,GE1-350 ,Geology ,QE1-996.5 - Abstract
The Antarctic plateau, characterized by cold and dry weather conditions with very little precipitation, is mostly covered by snow at the surface. This paper describes an intercomparison of snow models, of varying complexity, used for numerical weather prediction or academic research. The results of offline numerical simulations, carried out during 15 d in 2009, on a single site on the Antarctic plateau, show that the simplest models are able to reproduce the surface temperature as well as the most complex models provided that their surface parameters are well chosen. Furthermore, it is shown that the diversity of the surface parameters of the models strongly impacts the numerical simulations, in particular the temporal variability of the surface temperature and the components of the surface energy balance. The models tend to overestimate the surface temperature by 2–5 K at night and underestimate it by 2 K during the day. The observed and simulated turbulent latent heat fluxes are small, of the order of a few W m−2, with a tendency to underestimate, while the sensible heat fluxes are in general too intense at night as well as during the day. The surface temperature errors are consistent with too large a magnitude of sensible heat fluxes during the day and night. Finally, it is shown that the most complex multilayer models are able to reproduce well the propagation of the daily diurnal wave, and that the snow temperature profiles in the snowpack are very close to the measurements carried out on site.
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- 2022
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8. Water vapor in cold and clean atmosphere: a 3-year data set in the boundary layer of Dome C, East Antarctic Plateau
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C. Genthon, D. E. Veron, E. Vignon, J.-B. Madeleine, and L. Piard
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Environmental sciences ,GE1-350 ,Geology ,QE1-996.5 - Abstract
The air at the surface of the high Antarctic Plateau is very cold, dry and clean. Under such conditions, the atmospheric moisture can significantly deviate from thermodynamic equilibrium, and supersaturation with respect to ice can occur. Most conventional humidity sensors for meteorological applications cannot report supersaturation in this environment. A simple approach for measuring supersaturation using conventional instruments, with one being operated in a heated airflow, is presented. Since 2018, this instrumental setup has been deployed at three levels in the lower ∼40 m above the surface at Dome C on the high Antarctic Plateau. A resulting 3-year (2018–2020) record (Genthon et al., 2021a) is presented and analyzed for features such as the frequency of supersaturation with respect to ice, diurnal and seasonal variability, and vertical distribution. As supercooled liquid water droplets are frequently observed in clouds at the temperatures experienced on the high Antarctic Plateau, the distribution of relative humidity with respect to liquid water at Dome C is also discussed. It is suggested that, while not strictly mimicking the conditions of the high troposphere, the surface atmosphere on the Antarctic Plateau is a convenient natural laboratory to test parametrizations of cold microphysics predominantly developed to handle the genesis of high tropospheric clouds. Data are available from the PANGAEA data repository at https://doi.org/10.1594/PANGAEA.939425 (Genthon et al., 2021a).
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- 2022
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9. A proof-of-concept pipeline to guide evaluation of tumor tissue perfusion by dynamic contrast-agent imaging: Direct simulation and inverse tracer-kinetic procedures
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Irene E. Vignon-Clementel, Nick Jagiella, Jules Dichamp, Jérôme Kowalski, Wiltrud Lederle, Hendrik Laue, Fabian Kiessling, Oliver Sedlaczek, and Dirk Drasdo
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tumor perfusion ,in silico imaging ,tracer-kinetics models ,microcirculation ,dynamic contrast-enhanced imaging ,parameter estimation ,Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
Dynamic contrast-enhanced (DCE) perfusion imaging has shown great potential to non-invasively assess cancer development and its treatment by their characteristic tissue signatures. Different tracer kinetics models are being applied to estimate tissue and tumor perfusion parameters from DCE perfusion imaging. The goal of this work is to provide an in silico model-based pipeline to evaluate how these DCE imaging parameters may relate to the true tissue parameters. As histology data provides detailed microstructural but not functional parameters, this work can also help to better interpret such data. To this aim in silico vasculatures are constructed and the spread of contrast agent in the tissue is simulated. As a proof of principle we show the evaluation procedure of two tracer kinetic models from in silico contrast-agent perfusion data after a bolus injection. Representative microvascular arterial and venous trees are constructed in silico. Blood flow is computed in the different vessels. Contrast-agent input in the feeding artery, intra-vascular transport, intra-extravascular exchange and diffusion within the interstitial space are modeled. From this spatiotemporal model, intensity maps are computed leading to in silico dynamic perfusion images. Various tumor vascularizations (architecture and function) are studied and show spatiotemporal contrast imaging dynamics characteristic of in vivo tumor morphotypes. The Brix II also called 2CXM, and extended Tofts tracer-kinetics models common in DCE imaging are then applied to recover perfusion parameters that are compared with the ground truth parameters of the in silico spatiotemporal models. The results show that tumor features can be well identified for a certain permeability range. The simulation results in this work indicate that taking into account space explicitly to estimate perfusion parameters may lead to significant improvements in the perfusion interpretation of the current tracer-kinetics models.
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- 2023
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10. 10 years of temperature and wind observation on a 45 m tower at Dome C, East Antarctic plateau
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C. Genthon, D. Veron, E. Vignon, D. Six, J.-L. Dufresne, J.-B. Madeleine, E. Sultan, and F. Forget
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Environmental sciences ,GE1-350 ,Geology ,QE1-996.5 - Abstract
Long-term, continuous in situ observations of the near-surface atmospheric boundary layer are critical for many weather and climate applications. Although there is a proliferation of surface stations globally, especially in and around populous areas, there are notably fewer tall meteorological towers with multiple instrumented levels. This is particularly true in remote and extreme environments such as the East Antarctic plateau. In the article, we present and analyze 10 years of data from six levels of meteorological instrumentation mounted on a 42 m tower located at Dome C, East Antarctica, near the Concordia research station, producing a unique climatology of the near-surface atmospheric environment (Genthon et al., 2021a, b). Monthly temperature and wind data demonstrate the large seasonal differences in the near-surface boundary layer dynamics, depending on the presence or absence of solar surface forcing. Strong vertical temperature gradients (inversions) frequently develop in calm, winter conditions, while vertical convective mixing occurs in the summer, leading to near-uniform temperatures along the tower. Seasonal variation in wind speed is much less notable at this location than the temperature variation as the winds are less influenced by the solar cycle; there are no katabatic winds as Dome C is quite flat. Harmonic analysis confirms that most of the energy in the power spectrum is at diurnal, annual and semi-annual timescales. Analysis of observational uncertainty and comparison to reanalysis data from the latest generation of ECMWF (European Centre for Medium-Range Weather Forecasts) reanalyses (ERA5) indicate that wind speed is particularly difficult to measure at this location. Data are distributed on the PANGAEA data repository at https://doi.org/10.1594/PANGAEA.932512 (Genthon et al., 2021a) and https://doi.org/10.1594/PANGAEA.932513 (Genthon et al., 2021b).
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- 2021
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11. A whole lung in silico model to estimate age dependent particle dosimetry
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Kamran Poorbahrami, Irene E. Vignon-Clementel, Shawn C. Shadden, and Jessica M. Oakes
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Medicine ,Science - Abstract
Abstract Anatomical and physiological changes alter airflow characteristics and aerosol distribution in the developing lung. Correlation between age and aerosol dosimetry is needed, specifically because youth are more susceptible to medication side effects. In this study, we estimate aerosol dosages (particle diameters of 1, 3, and 5 $$\upmu$$ μ m) in a 3 month-old infant, a 6 year-old child, and a 36 year-old adult by performing whole lung subject-specific particle simulations throughout respiration. For 3 $$\upmu$$ μ m diameter particles we estimate total deposition as 88, 73, and $$66\%$$ 66 % and the conducting versus respiratory deposition ratios as 4.0, 0.5, and 0.4 for the infant, child, and adult, respectively. Due to their lower tidal volumes and functional residual capacities the deposited mass is smaller while the tissue concentrations are larger in the infant and child subjects, compared to the adult. Furthermore, we find that dose cannot be predicted by simply scaling by tidal volumes. These results highlight the need for additional clinical and computational studies that investigate the efficiency of treatment, while optimizing dosage levels in order to alleviate side effects, in youth.
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- 2021
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12. Generation of Patient-Specific Cardiac Vascular Networks: A Hybrid Image-Based and Synthetic Geometric Model.
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Clara Jaquet, Laurent Najman, Hugues Talbot, Leo J. Grady, Michiel Schaap, Buzzy Spain, Hyun Jin Kim 0003, Irene E. Vignon-Clementel, and Charles A. Taylor
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- 2019
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13. Tumor Cell Load and Heterogeneity Estimation From Diffusion-Weighted MRI Calibrated With Histological Data: an Example From Lung Cancer.
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Yi Yin, Oliver Sedlaczek, Benedikt Müller 0001, Arne Warth, Margarita Gonzalez-Vallinas, Bernd Lahrmann, Niels Grabe, Hans-Ulrich Kauczor, Kai Breuhahn, Irene E. Vignon-Clementel, and Dirk Drasdo
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- 2018
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14. Closed-Loop Lumped Parameter Modeling of Hemodynamics During Cirrhogenesis in Rats.
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Chloe Audebert, Geert Peeters, Patrick Segers, Wim Laleman, Diethard Monbaliu, Hannelie Korf, Jonel Trebicka, Irene E. Vignon-Clementel, and Charlotte Debbaut
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- 2018
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15. A Lumped Parameter Model to Study Atrioventricular Valve Regurgitation in Stage 1 and Changes Across Stage 2 Surgery in Single Ventricle Patients.
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Sanjay Pant, Chiara Corsini, Catriona Baker, Tain-Yen Hsia, Giancarlo Pennati, and Irene E. Vignon-Clementel
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- 2018
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16. Atmospheric moisture supersaturation in the near-surface atmosphere at Dome C, Antarctic Plateau
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C. Genthon, L. Piard, E. Vignon, J.-B. Madeleine, M. Casado, and H. Gallée
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Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Supersaturation often occurs at the top of the troposphere where cirrus clouds form, but is comparatively unusual near the surface where the air is generally warmer and laden with liquid and/or ice condensation nuclei. One exception is the surface of the high Antarctic Plateau. One year of atmospheric moisture measurement at the surface of Dome C on the East Antarctic Plateau is presented. The measurements are obtained using commercial hygrometry sensors modified to allow air sampling without affecting the moisture content, even in the case of supersaturation. Supersaturation is found to be very frequent. Common unadapted hygrometry sensors generally fail to report supersaturation, and most reports of atmospheric moisture on the Antarctic Plateau are thus likely biased low. The measurements are compared with results from two models implementing cold microphysics parameterizations: the European Center for Medium-range Weather Forecasts through its operational analyses, and the Model Atmosphérique Régional. As in the observations, supersaturation is frequent in the models but the statistical distribution differs both between models and observations and between the two models, leaving much room for model improvement. This is unlikely to strongly affect estimations of surface sublimation because supersaturation is more frequent as temperature is lower, and moisture quantities and thus water fluxes are small anyway. Ignoring supersaturation may be a more serious issue when considering water isotopes, a tracer of phase change and temperature, largely used to reconstruct past climates and environments from ice cores. Because observations are easier in the surface atmosphere, longer and more continuous in situ observation series of atmospheric supersaturation can be obtained than higher in the atmosphere to test parameterizations of cold microphysics, such as those used in the formation of high-altitude cirrus clouds in meteorological and climate models.
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- 2017
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17. Continuous measurements of isotopic composition of water vapour on the East Antarctic Plateau
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M. Casado, A. Landais, V. Masson-Delmotte, C. Genthon, E. Kerstel, S. Kassi, L. Arnaud, G. Picard, F. Prie, O. Cattani, H.-C. Steen-Larsen, E. Vignon, and P. Cermak
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Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Water stable isotopes in central Antarctic ice cores are critical to quantify past temperature changes. Accurate temperature reconstructions require one to understand the processes controlling surface snow isotopic composition. Isotopic fractionation processes occurring in the atmosphere and controlling snowfall isotopic composition are well understood theoretically and implemented in atmospheric models. However, post-deposition processes are poorly documented and understood. To quantitatively interpret the isotopic composition of water archived in ice cores, it is thus essential to study the continuum between surface water vapour, precipitation, surface snow and buried snow. Here, we target the isotopic composition of water vapour at Concordia Station, where the oldest EPICA Dome C ice cores have been retrieved. While snowfall and surface snow sampling is routinely performed, accurate measurements of surface water vapour are challenging in such cold and dry conditions. New developments in infrared spectroscopy enable now the measurement of isotopic composition in water vapour traces. Two infrared spectrometers have been deployed at Concordia, allowing continuous, in situ measurements for 1 month in December 2014–January 2015. Comparison of the results from infrared spectroscopy with laboratory measurements of discrete samples trapped using cryogenic sampling validates the relevance of the method to measure isotopic composition in dry conditions. We observe very large diurnal cycles in isotopic composition well correlated with temperature diurnal cycles. Identification of different behaviours of isotopic composition in the water vapour associated with turbulent or stratified regime indicates a strong impact of meteorological processes in local vapour/snow interaction. Even if the vapour isotopic composition seems to be, at least part of the time, at equilibrium with the local snow, the slope of δD against δ18O prevents us from identifying a unique origin leading to this isotopic composition.
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- 2016
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18. Brief communication: Two well-marked cases of aerodynamic adjustment of sastrugi
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C. Amory, F. Naaim-Bouvet, H. Gallée, and E. Vignon
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Environmental sciences ,GE1-350 ,Geology ,QE1-996.5 - Abstract
In polar regions, sastrugi are a direct manifestation of drifting snow and form the main surface roughness elements. In turn, sastrugi alter the generation of atmospheric turbulence and thus modify the wind field and the aeolian snow mass fluxes. Little attention has been paid to these feedback processes, mainly because of experimental difficulties. As a result, most polar atmospheric models currently ignore sastrugi over snow-covered regions. This paper aims at quantifying the potential influence of sastrugi on the local wind field and on snow erosion over a sastrugi-covered snowfield in coastal Adélie Land, East Antarctica. We focus on two erosion events during which sastrugi responses to shifts in wind direction have been interpreted from temporal variations in drag and aeolian snow mass flux measurements during austral winter 2013. Using this data set, it is shown that (i) neutral stability, 10 m drag coefficient (CDN10) values are in the range of 1.3–1.5 × 10−3 when the wind is well aligned with the sastrugi, (ii) as the wind shifts by only 20–30° away from the streamlined direction, CDN10 increases (by 30–120 %) and the aeolian snow mass flux decreases (by 30–80 %), thereby reflecting the growing contribution of the sastrugi form drag to the total surface drag and its inhibiting effect on snow erosion, (iii) the timescale of sastrugi aerodynamic adjustment can be as short as 3 h for friction velocities greater than 1 m s−1 and during strong drifting snow conditions and (iv) knowing CDN10 is not sufficient to estimate the snow erosion flux that results from drag partitioning at the surface because CDN10 includes the contribution of the sastrugi form drag.
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- 2016
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19. Patient‐specific Hemodynamic Simulations: Model Parameterization from Clinical Data to Enable Intervention Planning
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Irene E. Vignon‐Clementel and Sanjay Pant
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- 2022
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20. A Multiscale Filtering-Based Parameter Estimation Method for Patient-Specific Coarctation Simulations in Rest and Exercise.
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Sanjay Pant, Benoit Fabrèges, Jean-Frédéric Gerbeau, and Irene E. Vignon-Clementel
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- 2013
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21. Simulations hémodynamiques : paramétrage, données cliniques, planification d’interventions
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Irène E. VIGNON-CLEMENTEL and Sanjay PANT
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A partir de l'écoulement complexe dans des géométries multi-échelles, un modèle réduit en temps et espace est proposé pour simuler des données réelles. Les données patient sont obtenues à l'aide de méthodes classiques (IRM, pression, vitesse Doppler) et sont ensuite intégrées, en particulier via la résistance 3D (analogie électrique). Le modèle est alors optimisé pour prédire les résultats expérimentaux.
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- 2023
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22. Characterization of the boundary layer at Dome C (East Antarctica) during the OPALE summer campaign
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H. Gallée, S. Preunkert, S. Argentini, M. M. Frey, C. Genthon, B. Jourdain, I. Pietroni, G. Casasanta, H. Barral, E. Vignon, C. Amory, and M. Legrand
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Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Regional climate model MAR (Modèle Atmosphérique Régional) was run for the region of Dome C located on the East Antarctic plateau, during Antarctic summer 2011–2012, in order to refine our understanding of meteorological conditions during the OPALE tropospheric chemistry campaign. A very high vertical resolution is set up in the lower troposphere, with a grid spacing of roughly 2 m. Model output is compared with temperatures and winds observed near the surface and from a 45 m high tower as well as sodar and radiation data. MAR is generally in very good agreement with the observations, but sometimes underestimates cloud formation, leading to an underestimation of the simulated downward long-wave radiation. Absorbed short-wave radiation may also be slightly overestimated due to an underestimation of the snow albedo, and this influences the surface energy budget and atmospheric turbulence. Nevertheless, the model provides sufficiently reliable information about surface turbulent fluxes, vertical profiles of vertical diffusion coefficients and boundary layer height when discussing the representativeness of chemical measurements made nearby the ground surface during field campaigns conducted at Concordia station located at Dome C (3233 m above sea level).
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- 2015
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23. A case study of a low-level jet during OPALE
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H. Gallée, H. Barral, E. Vignon, and C. Genthon
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Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
A case study of a low-level jet (LLJ) during the OPALE (Oxidant Production over Antarctic Land and its Export) summer campaign is presented. It has been observed at Dome C (East Antarctica) and is simulated accurately by the three-dimensional version of the Modèle Atmosphérique Régional (MAR). It is found that this low-level jet is not related to an episode of thermal wind, suggesting that Dome C may be a place where turbulence on flat terrain can be studied.
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- 2015
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24. Atlas-Based Reduced Models of Blood Flows for Fast Patient-Specific Simulations.
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Kristin McLeod, Alfonso Caiazzo, Miguel A. Fernández, Tommaso Mansi, Irene E. Vignon-Clementel, Maxime Sermesant, Xavier Pennec, Younes Boudjemline, and Jean-Frédéric Gerbeau
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- 2010
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25. Group-wise construction of reduced models for understanding and characterization of pulmonary blood flows from medical images.
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Romain Guibert, Kristin McLeod, Alfonso Caiazzo, Tommaso Mansi, Miguel A. Fernández, Maxime Sermesant, Xavier Pennec, Irene E. Vignon-Clementel, Younes Boudjemline, and Jean-Frédéric Gerbeau
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- 2014
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26. A modular numerical method for implicit 0D/3D coupling in cardiovascular finite element simulations.
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Mahdi Esmaily Moghadam, Irene E. Vignon-Clementel, Richard Figliola, and Alison L. Marsden
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- 2013
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27. Predicting the risk of post-hepatectomy portal hypertension using a digital twin: A clinical proof of concept
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Florian Joly, Maïté Lewin, D. Castaing, Quentin Nicolas, Prisca Combari, Daniel Cherqui, Didier Samuel, Chloe Audebert, Antonio Sa Cunha, Eric Vibert, Marc-Antoine Allard, Irene E. Vignon-Clementel, René Adam, and N. Golse
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Male ,0301 basic medicine ,medicine.medical_specialty ,Cardiac output ,Portal venous pressure ,medicine.medical_treatment ,Clinical Decision-Making ,03 medical and health sciences ,Postoperative Complications ,0302 clinical medicine ,Liver Function Tests ,Risk Factors ,Internal medicine ,Hypertension, Portal ,Hepatectomy ,Humans ,Medicine ,Prospective Studies ,Aged ,Hepatology ,Portal Vein ,business.industry ,Liver failure ,Middle Aged ,Models, Theoretical ,Prognosis ,medicine.disease ,Magnetic Resonance Imaging ,Portal Pressure ,030104 developmental biology ,Cohort ,Cardiology ,Feasibility Studies ,Portal hypertension ,Female ,030211 gastroenterology & hepatology ,business ,Complication ,Liver Failure ,Major hepatectomy ,Follow-Up Studies - Abstract
Background & Aims Despite improvements in medical and surgical techniques, post-hepatectomy liver failure (PHLF) remains the leading cause of postoperative death. High postoperative portal vein pressure (PPV) and portocaval gradient (PCG), which cannot be predicted by current tools, are the most important determinants of PHLF. Therefore, we aimed to evaluate a digital twin to predict the risk of postoperative portal hypertension (PHT). Methods We prospectively included 47 patients undergoing major hepatectomy. A mathematical (0D) model of the entire blood circulation was assessed and automatically calibrated from patient characteristics. Hepatic flows were obtained from preoperative flow MRI (n = 9), intraoperative flowmetry (n = 16), or estimated from cardiac output (n = 47). Resection was then simulated in these 3 groups and the computed PPV and PCG were compared to intraoperative data. Results Simulated post-hepatectomy pressures did not differ between the 3 groups, comparing well with collected data (no significant differences). In the entire cohort, the correlation between measured and simulated PPV values was good (r = 0.66, no adjustment to intraoperative events) or excellent (r = 0.75) after adjustment, as well as for PCG (respectively r = 0.59 and r = 0.80). The difference between simulated and measured post-hepatectomy PCG was ≤3 mmHg in 96% of cases. Four patients suffered from lethal PHLF for whom the model satisfactorily predicted their postoperative pressures. Conclusions We demonstrated that a 0D model could correctly anticipate postoperative PHT, even using estimated hepatic flow rates as input data. If this major conceptual step is confirmed, this algorithm could change our practice toward more tailor-made procedures, while ensuring satisfactory outcomes. Lay summary Post-hepatectomy portal hypertension is a major cause of liver failure and death, but no tool is available to accurately anticipate this potentially lethal complication for a given patient. Herein, we propose using a mathematical model to predict the portocaval gradient at the end of liver resection. We tested this model on a cohort of 47 patients undergoing major hepatectomy and demonstrated that it could modify current surgical decision-making algorithms.
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- 2021
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28. Indocyanine Green Fluorescence Imaging to Predict Graft Survival After Orthotopic Liver Transplantation: A Pilot Study
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Muga Terasawa, Quentin Nicolas, Eric Vibert, René Adam, Marc-Antoine Allard, Chady Salloum, Oriana Ciacio, Nicolas Golse, Daniel Cherqui, Didier Samuel, Gabriella Pittau, Antonio Sa Cunha, Irene E. Vignon-Clementel, Damien Dousse, Luis Cano, Hôpital Paul Brousse, Physiopathologie et traitement des maladies du foie, Hôpital Paul Brousse-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris-Saclay, Hôpital de Rangueil, CHU Toulouse [Toulouse], Numerical simulation of biological flows (REO), Sorbonne Université (SU)-Inria de Paris, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Jacques-Louis Lions (LJLL (UMR_7598)), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP), Nutrition, Métabolismes et Cancer (NuMeCan), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Centre Hospitalier Universitaire de Toulouse (CHU Toulouse), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), Université de Rennes (UR)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), and BOPA_BERNOULLI
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Indocyanine Green ,Orthotopic liver transplantation ,[SDV]Life Sciences [q-bio] ,medicine.medical_treatment ,Pilot Projects ,Near-infrared fluorescence ,030230 surgery ,Liver transplantation ,Revascularization ,Modelling ,Indocyanine green dye ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Primary non-function ,Humans ,Medicine ,Prospective Studies ,Prospective cohort study ,Transplantation ,Hepatology ,business.industry ,Graft Survival ,Optical Imaging ,[SDV.MHEP.HEG]Life Sciences [q-bio]/Human health and pathology/Hépatology and Gastroenterology ,Liver Transplantation ,3. Good health ,Fluorescence intensity ,chemistry ,030211 gastroenterology & hepatology ,Surgery ,Graft survival ,Graft function ,business ,Nuclear medicine ,Indocyanine green ,Indocyanine green fluorescence - Abstract
Introduction: The incidence of primary non-function (PNF) after liver transplantation (LT) remains a major concern with the increasing use of marginal grafts. Indocyanine green (ICG) fluorescence is an imaging technique used in hepatobiliary surgery and LT. Because few early predictors are available, we aimed to quantify in real time the fluorescence of grafts during LT to predict their 3 months survival. Patients and methods: After graft revascularization, ICG was intravenously injected, then the fluorescence of the graft was captured with a near infrared camera and postoperatively quantified. A multi-parametric modelling of the parenchymal fluorescence intensity curve was proposed, and a predictive model of graft survival was tested. Results: Between July 2017 and May 2019, 76 LT were included, among which 6 recipients were re-transplanted (re-LT+ ). No side effects of ICG injection were observed. The parameter a150 (temporal course of fluorescence intensity) was significantly higher in the group re-LT+ group (0.022s-1 [0.016-0.035] versus 0.012s-1 [0.009-0.015], p=0.01). This parameter was the only independent predictive factor of graft survival at 3 months (OR=2.4 CI95% [1.05-5.5] p=0.03). The best cut-off for the parameter a150 (0.0155s-1 ) predicted the graft survival at 3 months with a sensitivity of 83% and a specificity of 79% (AUC=0.82 [0.67-0.98], p=0.01). Conclusion: Quantitative assessment of intraoperative ICG fluorescence on the graft was feasible to predict graft survival at 3 months with a good sensitivity and specificity. Further prospective studies should validate these results over larger cohorts and evaluate the clinical impact of this tool.
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- 2020
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29. Modeling the Pulmonary Circulation in CHD: Clinical Concepts, Engineering Applications, and an Integrated Medico-Engineering Approach
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Weiguang Yang, Jeffrey A. Feinstein, Irene E. Vignon-Clementel, Stanford School of Medicine [Stanford], Stanford Medicine, Stanford University-Stanford University, SImulations en Médecine, BIOtechnologie et ToXicologie de systèmes multicellulaires (SIMBIOTX ), Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), and European Project: ERC CoG 615220,H2020-EU.1.1. - EXCELLENT SCIENCE - European Research Council (ERC),MoDeLLiver(2020)
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[SDV.MHEP.PED]Life Sciences [q-bio]/Human health and pathology/Pediatrics ,CHD ,Surgical planning ,Pulmonary circulation ,Multiscale modeling ,Peripheral pulmonary artery stenosis ,CFD ,Blood flow simulations ,Clinical application ,[SPI.MECA.MEFL]Engineering Sciences [physics]/Mechanics [physics.med-ph]/Fluids mechanics [physics.class-ph] - Abstract
International audience; he pulmonary circulation is comprised of the pulmonary vascular tree (arteries, capillaries, veins), the pulmonary parenchyma, and the process during which deoxygenated blood traverses the pulmonary vascular tree to become oxygenated before returning to the left heart. In contrast to the systemic circulation, the pulmonary circulation exists at a pressure one-sixth that of the systemic circulation. A variety of forms of congenital heart disease (CHD) include abnormalities of the pulmonary circulation, some of which may result in serious symptoms. Mathematical modeling has been increasingly used to characterize the pulmonary circulation and improve our understanding of pulmonary hemodynamics in acquired and congenital heart disease. This chapter presents the state-of-the-art considerations of and methods for modeling the pulmonary circulation. A brief introduction of the pulmonary circulation’s physiology is followed by a clinical overview of CHD-related pulmonary vascular abnormalities, a summary of current mathematical modeling techniques, and example of real-world application of these techniques.
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- 2022
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30. Inferring Growth Control Mechanisms in Growing Multi-cellular Spheroids of NSCLC Cells from Spatial-Temporal Image Data.
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Nick Jagiella, Benedikt Müller 0001, Margareta Müller, Irene E. Vignon-Clementel, and Dirk Drasdo
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- 2016
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31. Special Issue of the VPH2020 Conference: 'Virtual Physiological Human: When Models, Methods and Experiments Meet the Clinic'
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Irene E. Vignon-Clementel, Dominique Chapelle, Abdul I. Barakat, Aline Bel-Brunon, Philippe Moireau, Eric Vibert, SImulations en Médecine, BIOtechnologie et ToXicologie de systèmes multicellulaires (SIMBIOTX ), Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Mathematical and Mechanical Modeling with Data Interaction in Simulations for Medicine (M3DISIM), Laboratoire de mécanique des solides (LMS), École polytechnique (X)-Mines Paris - PSL (École nationale supérieure des mines de Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)-École polytechnique (X)-Mines Paris - PSL (École nationale supérieure des mines de Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)-Inria Saclay - Ile de France, Laboratoire d'hydrodynamique (LadHyX), École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS), Institut Polytechnique de Paris (IP Paris), Laboratoire de Mécanique des Contacts et des Structures [Villeurbanne] (LaMCoS), Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Université de Lyon-Institut National des Sciences Appliquées (INSA)-Centre National de la Recherche Scientifique (CNRS), Physiopathologie et traitement des maladies du foie, Hôpital Paul Brousse-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris-Saclay, and Lamcos - gestionnaires Hal, Lamcos - gestionnaires Hal
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[SPI]Engineering Sciences [physics] ,[SPI] Engineering Sciences [physics] ,Biomedical Engineering ,[INFO]Computer Science [cs] ,[INFO] Computer Science [cs] ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience; No abstract available
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- 2022
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32. Hemodynamics After Fontan Procedure are Determined by Patient Characteristics and Anastomosis Placement Not Graft Selection: a Patient-Specific Multiscale Computational Study
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Anthony M. Hlavacek, Giovanni Biglino, Catriona Baker, Sanjay Pant, Giancarlo Pennati, Chiara Corsini, Adam L. Dorfman, Richard Figliola, Ethan Kung, Michael A. Quail, Francesco Migliavacca, Gregory Arbia, Alison L. Marsden, Andrew M. Taylor, Alessia Baretta, Tain-Yen Hsia, Silvia Schievano, and Irene E. Vignon-Clementel
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medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,medicine.medical_treatment ,Hemodynamics ,Patient characteristics ,Blood flow ,Anastomosis ,Patient specific ,Surgery ,Fontan procedure ,Cardiac magnetic resonance imaging ,medicine ,Graft selection ,business - Abstract
ObjectivesPatient-specific multiscale modeling simulates virtual surgeries of the Fontan procedure using three different graft options. Predictive modeling details post-operative outcomes that can help inform clinical decision support.MethodsSix patients underwent preoperative cardiac magnetic resonance imaging and catheterization. Virtual surgery is carried out for each patient to test the resulting hemodynamics of three Fontan graft options: ECC, 9mm Y-graft, and 12mm Y-graft.Results1) one-way ANOVA p>0.998 in all systemic pressures and flows between graft options, 2) p=0.706 for hepatic flow distribution between graft options, 3) local power loss differences do not affect the systemic circulation, 4) anastomosis positioning modification of the same Y-graft in the same patient changed left PA hepatic distribution from 0.66 to 0.49ConclusionsSystemic pressures and blood flow after the Fontan procedure are not affected by graft selection but are well influenced by patient pulmonary vascular impedance. The hepatic distribution can be affected by anastomosis placement.Ultra-mini abstractWe present the first case series of patient-specific multiscale modeling of the Fontan procedure. Despite noticeable local power loss differences, graft selection does not affect systemic pressure and flow rates or other clinically relevant quantities. Anastomosis placement can affect hepatic distribution.
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- 2021
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33. Assessing Early Cardiac Outflow Tract Adaptive Responses Through Combined Experimental-Computational Manipulations
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Jonathan T. Butcher, Irene E. Vignon-Clementel, Stephanie E. Lindsey, Department of Mechanical and Aerospace Engineering [Univ California Davis] (MAE - UC Davis), University of California [Davis] (UC Davis), University of California (UC)-University of California (UC), MSBME (Meinig School of Biomedical Engineering, Cornell University), Cornell University [New York], SImulations en Médecine, BIOtechnologie et ToXicologie de systèmes multicellulaires (SIMBIOTX ), Inria Saclay - Ile de France, and Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)
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Aortic arch ,Biomedical Engineering ,Hemodynamics ,Context (language use) ,Aorta, Thoracic ,Chick Embryo ,Biology ,Article ,Imaging, Three-Dimensional ,medicine.artery ,Occlusion ,medicine ,Morphogenesis ,Animals ,Artery occlusion ,[PHYS.MECA.BIOM]Physics [physics]/Mechanics [physics]/Biomechanics [physics.med-ph] ,Aorta ,Models, Cardiovascular ,Ultrasonography, Doppler ,Anatomy ,medicine.anatomical_structure ,Great vessels ,Pulsatile Flow ,Pharynx ,Tomography, X-Ray Computed ,Pharyngeal arch ,Blood Flow Velocity - Abstract
International audience; Mechanical forces are essential for proper growth and remodeling of the primitive pharyngeal arch arteries (PAAs) into the great vessels of the heart. Despite general acknowledgement of a hemodynamic-malformation link, the direct correlation between hemodynamics and PAA morphogenesis remains poorly understood. The elusiveness is largely due to difficulty in performing isolated hemodynamic perturbations andquantifying changes in-vivo. Previous in-vivo arch artery occlusion/ablation experiments either did not isolate the effects of hemodynamics, did not analyze the results in a 3D context or did not consider the effects of varying degrees of occlusion. Here, we overcome these limitations by combining minimally invasive occlusion experiments in the avian embryo with 3D anatomical models of development and in-silico testing ofexperimental phenomenon. We detail morphological and hemodynamic changes twenty-four hours post vessel occlusion. 3D anatomical models showed that occlusion geometries had more circular cross-sectional areas and more elongated arches than their control counterparts. Computational fluid dynamics revealed a marked change in wall shear stress-morphology trends. Instantaneous (in-silico) occlusion modelsprovided mechanistic insights into the dynamic vessel adaptation process, predicting pressure-area trends for a number of experimental occlusion arches. We follow the propagation of small defects in a single embryo Hamburger Hamilton (HH) Stage 18 embryo to a more serious defect in an HH29 embryo. Results demonstrate that hemodynamic perturbation of the presumptive aortic arch, through varying degrees of vessel occlusion, overrides natural growth mechanisms and prevents it from becoming the dominant arch of the aorta.
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- 2021
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34. Myocardial Perfusion Simulation for Coronary Artery Disease:A Coupled Patient-Specific Multiscale Model
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Lazaros Papamanolis, Michiel Schaap, Charles A. Taylor, Ibrahim Danad, Matthew Sinclair, Hugues Talbot, Laurent Najman, Irene E. Vignon-Clementel, Paul Knaapen, Pepijn A. van Diemen, Clara Jaquet, Hyun Jin Kim, SImulations en Médecine, BIOtechnologie et ToXicologie de systèmes multicellulaires (SIMBIOTX ), Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), HeartFlow, Laboratoire d'Informatique Gaspard-Monge (LIGM), École des Ponts ParisTech (ENPC)-Centre National de la Recherche Scientifique (CNRS)-Université Gustave Eiffel, Imperial College London, Amsterdam UMC, Centre de vision numérique (CVN), Institut National de Recherche en Informatique et en Automatique (Inria)-CentraleSupélec-Université Paris-Saclay, OPtimisation Imagerie et Santé (OPIS), Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Centre de vision numérique (CVN), Institut National de Recherche en Informatique et en Automatique (Inria)-CentraleSupélec-Université Paris-Saclay-CentraleSupélec-Université Paris-Saclay, Cardiology, ACS - Atherosclerosis & ischemic syndromes, ACS - Heart failure & arrhythmias, Amsterdam UMC - Amsterdam University Medical Center, CentraleSupélec, and Université Paris-Saclay
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Patient-Specific Modeling ,medicine.medical_specialty ,[SDV.IB.IMA]Life Sciences [q-bio]/Bioengineering/Imaging ,Heart Ventricles ,0206 medical engineering ,Biomedical Engineering ,Hemodynamics ,02 engineering and technology ,030204 cardiovascular system & hematology ,Coronary artery disease ,03 medical and health sciences ,0302 clinical medicine ,[SDV.MHEP.CSC]Life Sciences [q-bio]/Human health and pathology/Cardiology and cardiovascular system ,Arteriole ,medicine.artery ,Internal medicine ,Coronary Circulation ,Medicine ,Humans ,MBF (Myocardial Blood Flow) ,business.industry ,Myocardium ,PET perfusion map ,[SPI.MECA.BIOM]Engineering Sciences [physics]/Mechanics [physics.med-ph]/Biomechanics [physics.med-ph] ,Heart ,Blood flow ,[INFO.INFO-NA]Computer Science [cs]/Numerical Analysis [cs.NA] ,medicine.disease ,020601 biomedical engineering ,Coronary Vessels ,Coronary arteries ,Perfusion ,medicine.anatomical_structure ,Ventricle ,Cardiology ,Original Article ,business ,[SPI.SIGNAL]Engineering Sciences [physics]/Signal and Image processing ,Artery - Abstract
Patient-specific models of blood flow are being used clinically to diagnose and plan treatment for coronary artery disease. A remaining challenge is bridging scales from flow in arteries to the micro-circulation supplying the myocardium. Previously proposed models are descriptive rather than predictive and have not been applied to human data. The goal here is to develop a multiscale patient-specific model enabling blood flow simulation from large coronary arteries to myocardial tissue. Patient vasculatures are segmented from coronary computed tomography angiography data and extended from the image-based model down to the arteriole level using a space-filling forest of synthetic trees. Blood flow is modeled by coupling a 1D model of the coronary arteries to a single-compartment Darcy myocardium model. Simulated results on five patients with non-obstructive coronary artery disease compare overall well to [$$^{15}$$ 15 O]$$\text {H}_{{2}}$$ H 2 O PET exam data for both resting and hyperemic conditions. Results on a patient with severe obstructive disease link coronary artery narrowing with impaired myocardial blood flow, demonstrating the model’s ability to predict myocardial regions with perfusion deficit. This is the first report of a computational model for simulating blood flow from the epicardial coronary arteries to the left ventricle myocardium applied to and validated on human data.
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- 2021
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35. Simulation of a detoxifying organ function: Focus on hemodynamics modeling and convection‐reaction numerical simulation in microcirculatory networks
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Noemie Boissier, Dirk Drasdo, Irene E. Vignon-Clementel, Modelling and Analysis for Medical and Biological Applications (MAMBA), Inria de Paris, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Jacques-Louis Lions (LJLL (UMR_7598)), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP), Leibniz Research Centre for Working Environment and Human Factors [Dortmund] (IFADO), Technische Universität Dortmund [Dortmund] (TU), SImulations en Médecine, BIOtechnologie et ToXicologie de systèmes multicellulaires (SIMBIOTX ), Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), This work has been supported by the German Ministry of Education and Research through LiSym (Grant No. 031L0045, BMBF) and the French Ministry of Research through the grants iFlow (ANR-13-TECS-0006) and iLite (ANR-16-RHUS-0005), ANR-13-TECS-0006,iFLOW,Estimation intraopératoire de la fonction hépatique par caméra fluorescente proche-infrarouge lors de chirurgies du foie(2013), ANR-16-RHUS-0005,iLite,iLite(2016), and Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)
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Convection ,Fåhræus–Lindqvist effect ,Computer science ,0206 medical engineering ,Flow (psychology) ,Biomedical Engineering ,02 engineering and technology ,030204 cardiovascular system & hematology ,Signal ,Microcirculation ,[SPI.MECA.MEFL]Engineering Sciences [physics]/Mechanics [physics.med-ph]/Fluids mechanics [physics.class-ph] ,03 medical and health sciences ,0302 clinical medicine ,Computer Simulation ,[PHYS.MECA.BIOM]Physics [physics]/Mechanics [physics]/Biomechanics [physics.med-ph] ,Molecular Biology ,Fahraeus-Lindqvist effect ,Computer simulation ,Applied Mathematics ,Hemodynamics ,Models, Cardiovascular ,Convection-reaction ,Blood flow ,020601 biomedical engineering ,[INFO.INFO-MO]Computer Science [cs]/Modeling and Simulation ,Plasma skimming ,Numerical scheme for networks ,Computational Theory and Mathematics ,Modeling and Simulation ,Detoxifying organ ,Focus (optics) ,Biological system ,Software ,Blood Flow Velocity - Abstract
International audience; When modeling a detoxifying organ function, an important component is the impact of flow on the metabolism of a compound of interest carried by the blood. We here study the effects of red blood cells (such as the Fahraeus-Lindqvist effect and plasma skimming) on blood flow in typical microcirculatory components such as tubes, bifurcations and entire networks, with particular emphasis on the liver as important representative of detoxifying organs. In one of the plasma skimming models, under certain conditions, oscillations between states are found and analyzed in a methodical study to identify their causes and influencing parameters. The flow solution obtained is then used to define the velocity at which a compound would be transported. A convection-reaction equation is studied to simulate the transport of a compound in blood and its uptake by the surrounding cells. Different types of signal sharpness have to be handled depending on the application to address different temporal compound concentration profiles. To permit executing the studied models numerically stable and accurate, we here extend existing transport schemes to handle converging bifurcations, and more generally multi-furcations. We study the accuracy of different numerical schemes as well as the effect of reactions and of the network itself on the bolus shape. Even though this study is guided by applications in liver micro-architecture, the proposed methodology is general and can readily be applied to other capillary network geometries, hence to other organs or to bioengineered network designs.
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- 2021
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36. Intravital Dynamic and Correlative Imaging of Mouse Livers Reveals Diffusion-Dominated Canalicular and Flow-Augmented Ductular Bile Flux
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Georgia Guenther, Brigitte Begher-Tibbe, Adrian Friebel, Amruta Damle-Vartak, Nachiket Vartak, Florian Joly, Fabian Geisler, Simone Jörs, Jörns Fickel, Dirk Drasdo, Gudrun Wibbelt, Jan G. Hengstler, Ahmed Ghallab, Heribert Hofer, Stefan Hoehme, Irene E. Vignon-Clementel, Kasimir Wansing, Christian Hedberg, Marie Rosselin, Noemie Boissier, and Peter L.M. Jansen
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0301 basic medicine ,mouse livers ,Gastroenterology and Hepatology ,Bone canaliculus ,digestive system ,Bile flow ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Gastroenterologi ,medicine ,small-molecule flux ,Fluorescein ,Hepatology ,Chemistry ,imaging ,500 Naturwissenschaften und Mathematik::570 Biowissenschaften ,Biologie::570 Biowissenschaften ,Biologie ,ddc ,Interlobular bile ducts ,030104 developmental biology ,medicine.anatomical_structure ,Hepatocyte ,Biophysics ,Diffusive flux ,030211 gastroenterology & hepatology ,Correlative imaging ,Concentration gradient - Abstract
Small-molecule flux in tissue-microdomains is essential for organ function, but knowledge of this process is scant due to the lack of suitable methods. We developed two independent techniques that allow the quantification of advection (flow) and diffusion in individual bile canaliculi and in interlobular bile ducts of intact livers in living mice, namely Fluorescence Loss After Photoactivation (FLAP) and Intravital Arbitrary Region Image Correlation Spectroscopy (IVARICS). The results challenge the prevailing 'mechano-osmotic' theory of canalicular bile flow. After active transport across hepatocyte membranes bile acids are transported in the canaliculi primarily by diffusion. Only in the interlobular ducts, diffusion is augmented by regulatable advection. Photoactivation of fluorescein bis-(5-carboxymethoxy-2-nitrobenzyl)-ether (CMNB-caged fluorescein) in entire lobules demonstrated the establishment of diffusive gradients in the bile canalicular network and the sink function of interlobular ducts. In contrast to the bile canalicular network, vectorial transport was detected and quantified in the mesh of interlobular bile ducts. In conclusion, the liver consists of a diffusion dominated canalicular domain, where hepatocytes secrete small molecules and generate a concentration gradient and a flow-augmented ductular domain, where regulated water influx creates unidirectional advection that augments the diffusive flux.
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- 2021
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37. Rapid modeling: a surgical proof-of-concept explained by hemodynamics modeling
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Quentin Nicolas, Eric Vibert, Florian Joly, Irene E. Vignon-Clementel, Nicolas Golse, P. D. Lin, Department of Surgery, Hepato-Biliary Centre in Paul-Brousse Hospital, Assistance Publique Hôpitaux de Paris, Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut National de la Santé et de la Recherche Médicale (INSERM)-, Assistance Publique Hôpitaux de Paris, Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut National de la Santé et de la Recherche Médicale (INSERM), SImulations en Médecine, BIOtechnologie et ToXicologie de systèmes multicellulaires (SIMBIOTX ), Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Institut National de Recherche en Informatique et en Automatique (Inria), Mécanismes cellulaires et moléculaires de l'adaptation au stress et cancérogenèse (INSERM UMR1193), Université Paris-Saclay, Department of Transplantation Medicine, Oslo University Hospital [Oslo], Inria-APHP fellowship, and Lallemant, Christopher
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medicine.medical_specialty ,0206 medical engineering ,Biomedical Engineering ,Hemodynamics ,Bioengineering ,02 engineering and technology ,liver ,Resection ,03 medical and health sciences ,0302 clinical medicine ,Medicine ,ComputingMilieux_MISCELLANEOUS ,surgical innovation ,business.industry ,Liver segment ,modeling ,030229 sport sciences ,General Medicine ,Total Hepatectomy ,[INFO.INFO-IA]Computer Science [cs]/Computer Aided Engineering ,020601 biomedical engineering ,[INFO.INFO-IA] Computer Science [cs]/Computer Aided Engineering ,Computer Science Applications ,Surgery ,Human-Computer Interaction ,Transplantation ,Proof of concept ,business ,transplantation - Abstract
The RAPID (Resection And Partial Liver Segment 2/3 Transplantation with Delayed total hepatectomy) concept is an innovative surgical procedure that was recently proposed to increase the availabilit...
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- 2020
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38. A whole lung in silico model to estimate age dependent particle dosimetry
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Jessica M. Oakes, Irene E. Vignon-Clementel, Shawn C. Shadden, Kamran Poorbahrami, Department of Mechanical and Industrial Engineering [Boston], Northeastern University [Boston], SImulations en Médecine, BIOtechnologie et ToXicologie de systèmes multicellulaires (SIMBIOTX ), Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Department of Mechanical Engineering [Berkeley], University of California [Berkeley] (UC Berkeley), and University of California (UC)-University of California (UC)
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Adult ,Dose ,Science ,0206 medical engineering ,02 engineering and technology ,Article ,03 medical and health sciences ,0302 clinical medicine ,Respiration ,Administration, Inhalation ,medicine ,Dosimetry ,Humans ,Computer Simulation ,Respiratory system ,[PHYS.MECA.BIOM]Physics [physics]/Mechanics [physics]/Biomechanics [physics.med-ph] ,Child ,Lung ,Aerosols ,Multidisciplinary ,Chemistry ,business.industry ,Infant ,Paediatrics ,respiratory system ,Models, Theoretical ,020601 biomedical engineering ,Aerosol ,Deposition (aerosol physics) ,medicine.anatomical_structure ,030228 respiratory system ,Drug delivery ,Medicine ,Particle ,Nuclear medicine ,business ,Biomedical engineering - Abstract
Anatomical and physiological changes alter airflow characteristics and aerosol distribution in the developing lung. Correlation between age and aerosol dosimetry is needed, specifically because youth are more susceptible to medication side effects. In this study, we estimate aerosol dosages (particle diameters of 1, 3, and 5 $$\upmu$$ μ m) in a 3 month-old infant, a 6 year-old child, and a 36 year-old adult by performing whole lung subject-specific particle simulations throughout respiration. For 3 $$\upmu$$ μ m diameter particles we estimate total deposition as 88, 73, and $$66\%$$ 66 % and the conducting versus respiratory deposition ratios as 4.0, 0.5, and 0.4 for the infant, child, and adult, respectively. Due to their lower tidal volumes and functional residual capacities the deposited mass is smaller while the tissue concentrations are larger in the infant and child subjects, compared to the adult. Furthermore, we find that dose cannot be predicted by simply scaling by tidal volumes. These results highlight the need for additional clinical and computational studies that investigate the efficiency of treatment, while optimizing dosage levels in order to alleviate side effects, in youth.
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- 2020
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39. Reply to: 'A step forward to predict the risk of post-hepatectomy portal hypertension'
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N. Golse, Irene E. Vignon-Clementel, Eric Vibert, Centre Hépato-Biliaire [Hôpital Paul Brousse] (CHB), Hôpital Paul Brousse-Assistance Publique - Hôpitaux de Paris, Physiopathogénèse et Traitement des Maladies du Foie, Hôpital Paul Brousse-Université Paris-Saclay, SImulations en Médecine, BIOtechnologie et ToXicologie de systèmes multicellulaires (SIMBIOTX ), Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), and BOPA_BERNOULLI
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medicine.medical_specialty ,Carcinoma, Hepatocellular ,Hepatology ,business.industry ,medicine.medical_treatment ,Liver Neoplasms ,MEDLINE ,[SDV.MHEP.CHI]Life Sciences [q-bio]/Human health and pathology/Surgery ,medicine.disease ,Internal medicine ,Hypertension, Portal ,medicine ,Cardiology ,Hepatectomy ,Humans ,Portal hypertension ,[PHYS.MECA.BIOM]Physics [physics]/Mechanics [physics]/Biomechanics [physics.med-ph] ,business ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
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- 2021
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40. Partial orthotopic liver transplantation in combination with two-stage hepatectomy: A proof-of-concept explained by mathematical modeling
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Eric Vibert, Irene E. Vignon-Clementel, Florian Joly, Pål-Dag Line, Nicolas Golse, Quentin Nicolas, Centre Hépato-Biliaire [Hôpital Paul Brousse] (CHB), Hôpital Paul Brousse-Assistance Publique - Hôpitaux de Paris, Physiopathologie et traitement des maladies du foie, Hôpital Paul Brousse-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris-Saclay, Numerical simulation of biological flows (REO), Sorbonne Université (SU)-Inria de Paris, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Jacques-Louis Lions (LJLL (UMR_7598)), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP), Oslo University Hospital [Oslo], Institute of Clinical Medicine [Oslo], Faculty of Medicine [Oslo], University of Oslo (UiO)-University of Oslo (UiO), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), BOPA_BERNOULLI, and Vignon-Clementel, Irene
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Male ,medicine.medical_specialty ,[SDV.MHEP.CHI] Life Sciences [q-bio]/Human health and pathology/Surgery ,medicine.medical_treatment ,Population ,Biophysics ,Hemodynamics ,[SDV.MHEP.CHI]Life Sciences [q-bio]/Human health and pathology/Surgery ,Liver transplantation ,Revascularization ,Models, Biological ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Hepatectomy ,Humans ,Orthopedics and Sports Medicine ,Stage (cooking) ,[PHYS.MECA.BIOM]Physics [physics]/Mechanics [physics]/Biomechanics [physics.med-ph] ,education ,Retrospective Studies ,education.field_of_study ,business.industry ,Portal Vein ,[PHYS.MECA.BIOM] Physics [physics]/Mechanics [physics]/Biomechanics [physics.med-ph] ,030229 sport sciences ,Total Hepatectomy ,Middle Aged ,Models, Theoretical ,medicine.disease ,Portal Pressure ,Liver Transplantation ,Transplantation ,Liver ,Portal hypertension ,Female ,Radiology ,business ,030217 neurology & neurosurgery - Abstract
Background Resection And Partial Liver Segment 2/3 Transplantation with Delayed total hepatectomy (RAPID) includes total hepatectomy in 2 steps with small graft transplantation at first stage. To avoid graft portal hyperperfusion, portal vein pressure monitoring is required after revascularization and right portal vein clamping. To date, portal flow modulation has not been reported but simulating hemodynamics in RAPID patients would be useful to anticipate these procedures. Our team developed hemodynamic 0D modeling; we aimed to assess if this mathematical model could be accurately used in the RAPID setting. Methods The modified 0D model was retrospectively tested on 3 patients. We compared our estimated portal vein pressures and portocaval gradients to those intraoperatively measured, as indication to modulate portal flow relies on these measures. Findings Portal pressures measured after right portal vein clamping (end of RAPID procedure) in patients 1, 2 and 3 were respectively of 14, 16 and 12 mmHg while the simulated pressures were of 13.1, 14.8 and 11.5 mmHg (p = 0.25). Portocaval gradients measured after right portal vein clamping in the 3 patients were respectively of 10, 11 and 7 mmHg while the simulated gradients were of 9.9, 11.6 and 8.3 mmHg (p = 0.5). Interpretation We succeeded to predict portal vein pressures and portocaval gradients after RAPID. This promising report demonstrates that 0D simulation could be a useful tool for human decision-making. Moreover, such a patient-specific model could be of importance if we transpose RAPID experience to hepatocellular carcinoma bearing cirrhotics, a population with high probability of portal hypertension after RAPID.
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- 2020
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41. Development of a Personalized 3D Carotid Model for Cerebral Vasculopathy Monitoring in Sickle Cell Disease
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Pablo Bartolucci, Valentin Amar, Frédéric Segonds, Seguin Marion, Philippe Connes, Jean-Frédéric Gerbeau, Irene E. Vignon-Clementel, Laurène Lenoir, Nguyen-Peyre Kim-Anh, Nuriye Akçay, Suzanne Verlhac, IMRB - 'Transfusion et Maladies du Globule Rouge' [Créteil] (U955 Inserm - UPEC), Institut Mondor de Recherche Biomédicale (IMRB), Institut National de la Santé et de la Recherche Médicale (INSERM)-IFR10-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Institut National de la Santé et de la Recherche Médicale (INSERM)-IFR10-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12), Imagine - Institut des maladies génétiques (IHU) (Imagine - U1163), Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris Cité (UPCité), Laboratoire Conception de Produits et Innovation (LCPI), Arts et Métiers Sciences et Technologies, HESAM Université - Communauté d'universités et d'établissements Hautes écoles Sorbonne Arts et métiers université (HESAM)-HESAM Université - Communauté d'universités et d'établissements Hautes écoles Sorbonne Arts et métiers université (HESAM), Institut National de Recherche en Informatique et en Automatique (Inria), Laboratoire d'Excellence : Biogenèse et pathologies du globule rouge (Labex Gr-Ex), Université Sorbonne Paris Cité (USPC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris Cité (UPCité), Etablissement Français du Sang [Île-de-France Mondor], Service d'imagerie médicale, Centre de référence de la drépanocytose, CHIC et Hôpital Debré, Créteil, France, Centre de Référence des Syndromes Drépanocytaires Majeurs, and Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Hôpital Henri Mondor-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)
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medicine.medical_specialty ,beta-globin ,brain ,[SDV]Life Sciences [q-bio] ,Immunology ,Cell ,Blood viscosity ,coculture techniques ,Disease ,Biochemistry ,Magnetic resonance angiography ,sickle cell anemia ,Internal medicine ,medicine.artery ,Anterior cerebral artery ,Medicine ,cerebrovascular accident in children ,Ejection fraction ,medicine.diagnostic_test ,business.industry ,whole blood ,[SDV.MHEP.HEM]Life Sciences [q-bio]/Human health and pathology/Hematology ,Cell Biology ,Hematology ,Hypoxia (medical) ,abnormal hemoglobins ,medicine.disease ,anemia ,exchange transfusion ,Sickle cell anemia ,doppler ultrasound ,medicine.anatomical_structure ,cardiovascular system ,Cardiology ,vascular diseases ,medicine.symptom ,business - Abstract
Introduction Sickle cell disease (SCD) is the most prevalent and severe monogenic disorder due to a mutation in the b-globin gene, responsible for the production of an abnormal hemoglobin (HbS) which polymerizes under hypoxia. Cerebral vasculopathy (CV) generally appearing during childhood, is responsible for ischemic stroke, making SCD the first etiology of stroke in children and young adults. To date, several biological and hemodynamical determinants have been identified in CV development such as severe anemia and/or high intracranial vascular flow velocities (> 200 cm/s). Chronic blood exchange transfusion decreases the risk of stroke in children having a pathological Doppler. However some patients still have a progressive impairment despite conventional treatment highlighting the need for new therapeutic strategies and a better understanding of the physiopathology. Therefore, by developing a 3D carotid model reproducing exactly vascular parameters of a SCD patient, we aim to: (i) determine the mechanisms of CV development in SCD, (ii) find new therapeutic approaches and (iii) predict the risk of progression of CV. Materials and methods Three-dimensional reconstructions of the internal carotid, middle cerebral and anterior cerebral artery from SCD patients were generated from magnetic resonance angiograms (MIMICS & 3Matics software, Materialise). We performed 3D simulations of the Navier-Stokes equations in patient specific geometries, including the state-of-the-art techniques of Computational Hemodynamics (multiscale coupling, backflow stabilization - FeLiSCe software) and other factors - such as the increase of the ejection fraction or the drop of peripheral resistances). Blood viscosity was based on a SCD cohort. Hemodynamic properties such as flow velocities (TMMV) and wall shear stress (WSS) in different areas of modelled carotid were then computed according to flow variations. Modelled carotid was obtained by 3D printing according to computer design (CATIA software). The next steps will consist in 1/importing doppler parameters from patients in a programmable pump for flow assays with blood mimicking fluid to measure TMMV and WSS at different areas in carotid, 2/incorporating resting or activated platelets in BMF to evaluate impact of high WSS on platelets degranulation, 3/developing a flow co-culture of smooth muscle cells (SMCs) and human umbilical vein endothelial cells (HUVECs) on carotid wall. HUVECs and SMCs at different zones of the carotid undergoing high/low WSS and oscillatory flow will be analysed Preliminary results Our preliminary results suggest that the carotid inlet flow but not blood viscosity is responsible for the pathological intra cranial velocities (Figure 1A). At high carotid inlet flow, areas of high and low WSS appeared in children (Figure 1B), suggesting the existence of turbulent flow that could lead to arterial wall damages. Figure 2A shows a 3D printed carotid reproducing the exact SCD child's one. The material of artificial carotid is compatible with HUVECs culture (Figure 2B) and fluidic experiment at high inlet flow (Figure 2C). On Doppler ultrasonography, the velocities measured in different sections of carotid were comparable to patient's data and these velocities were modified according to variations of inlet flow values. Conclusions and perspectives By modification of input conditions, our 3D personalized model can predict high or low vascular velocities areas and will allow a better understanding of the pathophysiological processes involved at the interface between abnormal flow and cells on carotid wall. This innovative model could be a pertinent tool to evaluate individually effectiveness of new therapeutic strategies in SCD patients. Furthermore, this work may constitute a proof of concept that can be transposed to other diseases. Disclosures Verlhac: Addmedica, Paris: Other: Financial Support; Bluebird Bio: Consultancy. Bartolucci:AddMedica: Honoraria, Membership on an entity's Board of Directors or advisory committees; Roche: Membership on an entity's Board of Directors or advisory committees; HEMANEXT: Membership on an entity's Board of Directors or advisory committees; Global Blood Therapeutics: Membership on an entity's Board of Directors or advisory committees; Agios: Membership on an entity's Board of Directors or advisory committees; Novartis: Membership on an entity's Board of Directors or advisory committees.
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- 2019
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42. Verification of the Coupled-Momentum Method with Womersley's Deformable Wall Analytical Solution
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Christopher J. Arthurs, Vasilina Filonova, Irene E. Vignon-Clementel, C. Alberto Figueroa, University of Michigan Medical School [Ann Arbor], University of Michigan [Ann Arbor], University of Michigan System-University of Michigan System, Imaging Sciences and Biomedical Engineering Division [London], Guy's and St Thomas' Hospital [London]-King‘s College London, Numerical simulation of biological flows (REO), Sorbonne Université (SU)-Inria de Paris, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Jacques-Louis Lions (LJLL (UMR_7598)), Université Paris Diderot - Paris 7 (UPD7)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Diderot - Paris 7 (UPD7)-Centre National de la Recherche Scientifique (CNRS), and This work was supported bythe National Institute of Health [grant U01 HL135842]
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Fluid-Structure Interaction ,0206 medical engineering ,Biomedical Engineering ,Pulsatile flow ,fluid-structure interaction ,02 engineering and technology ,Kinematics ,030204 cardiovascular system & hematology ,Domain (mathematical analysis) ,Article ,Momentum ,03 medical and health sciences ,0302 clinical medicine ,impedance boundary condition ,Blood Flow ,Fluid–structure interaction ,Scale analysis (mathematics) ,blood flow ,Animals ,Humans ,Coupled-Momentum Method ,[PHYS.MECA.MEFL]Physics [physics]/Mechanics [physics]/Fluid mechanics [physics.class-ph] ,[PHYS.MECA.BIOM]Physics [physics]/Mechanics [physics]/Biomechanics [physics.med-ph] ,Molecular Biology ,Physics ,Impedance Boundary Condition ,[PHYS.MECA.MEFL]Physics [physics]/Mechanics [physics]/Mechanics of the fluids [physics.class-ph] ,Applied Mathematics ,Attenuation ,Linear elasticity ,Verification ,Mechanics ,020601 biomedical engineering ,Womersley Deformable Wall Solution ,Carotid Arteries ,Computational Theory and Mathematics ,Modeling and Simulation ,Pulsatile Flow ,Blood Circulation ,Womersley Deformable Wall solution ,verification ,coupled-momentum method ,Software ,Algorithms ,Blood Flow Velocity - Abstract
International audience; In this paper, we perform a verification study of the Coupled-Momentum Method (CMM), a 3D fluid-structure interaction (FSI) model which uses a thin linear elastic membrane and linear kinematics to describe the mechanical behavior of the vessel wall. The verification of this model is done using Womersley's deformable wall analytical solution for pulsatile flow in a semi-infinite cylindrical vessel. This solution is, under certain premises, the analytical solution of the CMM and can thus be used for model verification. For the numerical solution, we employ an impedance boundary condition to define a reflection-free outflow boundary condition and thus mimic the physics of the analytical solution, which is defined on a semi-infinite domain. We first provide a rigorous derivation of Womersley's deformable wall theory via scale analysis. We then illustrate different characteristics of the analytical solution such as space-time wave periodicity and attenuation. Finally, we present the verification tests comparing the CMM with Womersley's theory.
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- 2019
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43. A cohort longitudinal study identifies morphology and hemodynamics predictors of abdominal aortic aneurysm growth
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Florian Joly, Claude Kauffmann, Gilles Soulez, Simon Lessard, Irene E. Vignon-Clementel, Modelling and Analysis for Medical and Biological Applications (MAMBA), Inria de Paris, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Jacques-Louis Lions (LJLL (UMR_7598)), Université Paris Diderot - Paris 7 (UPD7)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Diderot - Paris 7 (UPD7)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), University Hospital Research Center, CHU Sainte Justine [Montréal], Numerical simulation of biological flows (REO), Sorbonne Université (SU)-Inria de Paris, Université Paris Diderot - Paris 7 (UPD7)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Diderot - Paris 7 (UPD7)-Centre National de la Recherche Scientifique (CNRS), and This work has been supported by the Collaborative Research and Development Grants no. 460903-13 provided by the Natural Sciences and Engineering Research Council of Canada (NSERC) and the Industry-partnered CollaborativeResearch grant no. 124294 from the Canadian Institutes of Health Research (CIHR).
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Male ,Longitudinal study ,medicine.medical_specialty ,[SDV]Life Sciences [q-bio] ,0206 medical engineering ,Biomedical Engineering ,Hemodynamics ,02 engineering and technology ,Disease ,ILT (Intra-Luminal Thrombus) ,Growth ,[SPI.MECA.MEFL]Engineering Sciences [physics]/Mechanics [physics.med-ph]/Fluids mechanics [physics.class-ph] ,Wall shear stress ,Risk groups ,Internal medicine ,medicine ,Humans ,Longitudinal Studies ,[PHYS.MECA.BIOM]Physics [physics]/Mechanics [physics]/Biomechanics [physics.med-ph] ,Aged ,Haemodynamics ,business.industry ,Models, Cardiovascular ,Blood flow ,Control subjects ,medicine.disease ,020601 biomedical engineering ,Abdominal aortic aneurysm ,Risk prediction ,3. Good health ,CFD (Computational Fluid Dynamics ,Cohort ,Cardiology ,cardiovascular system ,Female ,[SDV.IB]Life Sciences [q-bio]/Bioengineering ,Tomography, X-Ray Computed ,business ,Supervised learning ,Aortic Aneurysm, Abdominal - Abstract
International audience; Abdominal aortic aneurysms (AAA) are localized, commonly occurring aortic dilations. Following rupture only immediate treatment can prevent morbidity and mortality. AAA maximal diameter and growth are the current metrics to evaluate the associated risk and plan intervention. Although these criteria alone lack patient specificity, predicting their evolution would improve clinical decision. If the disease is known to be associated with altered morphology and blood flow, intraluminal thrombus deposit and clinical symptoms, the growth mechanisms are yet to be fully understood. In this retrospective longitudinal study of 138 scans, morphological analysis and blood flow simulations for 32 patients with clinically diagnosed AAAs and several follow-up CT-scans, are performed and compared to 9 control subjects. Several metrics stratify patients between healthy, low and high risk groups. Local correlations between hemodynamic metrics and AAA growth are also explored but due to their high inter-patient variability, do not explain AAA heterogeneous growth. Finally, high-risk predictors trained with successively clinical, morphological, hemodynamic and all data, and their link to the AAA evolution are built from supervise learning. Predictive performance is high for morphological, hemodynamic and all data, in contrast to clinical data. The morphology-based predictor exhibits an interesting effort-predictability tradeoff to be validated for clinical translation.
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- 2019
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44. Intravital dynamic and correlative imaging reveals diffusion-dominated canalicular and flow-augmented ductular bile flux
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Noemie Boissier, Amruta Damle-Vartak, Florian Joly, Jörns Fickel, Brigitte Begher-Tibbe, Georgia Guenther, Fabian Geisler, Simone Jörs, Gudrun Wibbelt, Marie Rosselin, Kasimir Wansing, Christian Hedberg, Peter L.M. Jansen, Adrian Friebel, Nachiket Vartak, Dirk Drasdo, Irene E. Vignon-Clementel, Ahmed Ghallab, Heribert Hofer, Stefan Hoehme, and Jan G. Hengstler
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Chemistry ,Organ function ,Bone canaliculus ,digestive system ,Bile flow ,Interlobular bile ducts ,chemistry.chemical_compound ,Membrane ,medicine.anatomical_structure ,Hepatocyte ,medicine ,Biophysics ,Fluorescein ,Concentration gradient - Abstract
Small-molecule flux in tissue-microdomains is essential for organ function, but knowledge of this process is scant due to the lack of suitable methods. We developed two independent techniques that allow the quantification of advection (flow) and diffusion in individual bile canaliculi and in interlobular bile ducts of intact livers in living mice, namely Fluorescence Loss After Photoactivation (FLAP) and Intravital Arbitrary Region Image Correlation Spectroscopy (IVARICS). The results challenge the prevailing ‘mechano-osmotic’ theory of canalicular bile flow. After active transport across hepatocyte membranes bile acids are transported in the canaliculi primarily by diffusion. Only in the interlobular ducts, diffusion is augmented by regulatable advection. Photoactivation of fluorescein bis-(5-carboxymethoxy-2-nitrobenzyl)-ether (CMNB-caged fluorescein) in entire lobules demonstrated the establishment of diffusive gradients in the bile canalicular network and the sink function of interlobular ducts. In contrast to the bile canalicular network, vectorial transport was detected and quantified in the mesh of interlobular bile ducts. In conclusion, the liver consists of a diffusion dominated canalicular domain, where hepatocytes secrete small molecules and generate a concentration gradient and a flow-augmented ductular domain, where regulated water influx creates unidirectional advection that augments the diffusive flux.One Sentence Summary/KeywordsBile flux proceeds by diffusion in canaliculi, augmented by advection in ducts.
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- 2019
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45. Kinetics of Hepatic Volume Evolution and Architectural Changes after Major Resection in a Porcine Model
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Irene E. Vignon-Clementel, Eric Vibert, Petru Bucur, Mohamed Bekheit, Chloe Audebert, Elodie Miquelestorena-Standley, Centre Hépato-Biliaire [Hôpital Paul Brousse] (CHB), Hôpital Paul Brousse-Assistance Publique - Hôpitaux de Paris, Physiopathologie et traitement des maladies du foie, Université Paris-Sud - Paris 11 (UP11)-Institut National de la Santé et de la Recherche Médicale (INSERM)-AP-HP Hôpital Paul Brousse, University of Aberdeen, Numerical simulation of biological flows (REO), Sorbonne Université (SU)-Inria de Paris, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Jacques-Louis Lions (LJLL (UMR_7598)), Université Paris Diderot - Paris 7 (UPD7)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Diderot - Paris 7 (UPD7)-Centre National de la Recherche Scientifique (CNRS), Centre Hospitalier Régional Universitaire de Tours (CHRU Tours), Institut National de la Santé et de la Recherche Médicale (INSERM)-Hôpital Paul Brousse-Université Paris-Sud - Paris 11 (UP11), and Université Paris-Sud - Paris 11 (UP11)-Hôpital Paul Brousse-Institut National de la Santé et de la Recherche Médicale (INSERM)
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medicine.medical_specialty ,Swine ,business.industry ,Liver volume ,Urology ,Large white ,[SDV.MHEP.HEG]Life Sciences [q-bio]/Human health and pathology/Hépatology and Gastroenterology ,Blood flow ,[SDV.MHEP.CHI]Life Sciences [q-bio]/Human health and pathology/Surgery ,Body weight ,Liver Regeneration ,Resection ,Kinetics ,medicine.anatomical_structure ,Liver ,Volume (thermodynamics) ,Porcine liver ,medicine ,Animals ,Hepatectomy ,Surgery ,[PHYS.MECA.BIOM]Physics [physics]/Mechanics [physics]/Biomechanics [physics.med-ph] ,business ,Artery - Abstract
Background: The hepatic volume gain following resection is essential for clinical recovery. Previous studies have focused on cellular regeneration. This study aims to explore the rate of hepatic regeneration of the porcine liver following major resection, highlighting estimates of the early microarchitectural changes that occur during the cellular regeneration. Methods: Nineteen large white pigs had 75% resection with serial measurements of the hepatic volume, density, blood flow, and architectural changes. Results: The growth rate initially was 45% per day, then rapidly decreased and was accompanied by a similar pattern of hepatic fat deposition. The architectural changes showed a significant increase in the Ki67 expression (p < 0.0001) in the days following resection with a peak on the 2nd day and nearly normalized on day 7. The expression of CD31 increased significantly on the 2nd and 3rd days compared to the pre-resection samples (p = 0.03). Hepatic artery flow per liver volume remained at baseline ranges during regeneration. Portal flow per liver volume increased after liver resection (p < 0.001), was still elevated on the 1st postoperative day, then decreased. Correlations were significantly negative between the hepatic volume increase on day 3 and the hepatic oxygen consumption and the net lactate production at the end of the procedure (r = –0.82, p = 0.01, and r = –0.70, p = 0.03). Conclusion: The volume increase in the first days – a fast process – is not explained by cellular proliferation alone. The liver/body weight ratio is back to 50% of the preoperative value after 3 days to close to 100% volume regain on days 10–15.
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- 2019
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46. Corrigendum to 'Group-wise construction of reduced models for understanding and characterization of pulmonary blood flows from medical images' [Med. Image Anal. 18(2014) 63-82].
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Romain Guibert, Kristin McLeod, Alfonso Caiazzo, Tommaso Mansi, Miguel A. Fernández, Maxime Sermesant, Xavier Pennec, Irene E. Vignon-Clementel, Younes Boudjemline, and Jean-Frédéric Gerbeau
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- 2014
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47. Intérêt de l’imagerie de fluorescence au vert d’indocyanine au cours d’une transplantation hépatique pour prédire la survie du greffon
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Quentin Nicolas, D. Dousse, O. Ciacio, Irene E. Vignon-Clementel, G. Pittau, Eric Vibert, Rosalyn M. Adam, Daniel Cherqui, C. Salloum, N. Golse, Marc-Antoine Allard, and A. Sa Cunha
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Surgery - Abstract
Introduction L’imagerie de fluorescence au vert d’indocyanine (ICG) s’est developpee en chirurgie hepatobiliaire et transplantation hepatique (TH), initialement par analyse qualitative des images et desormais avec quantification. L’incidence des non-fonctions primaires du greffon apres TH reste non negligeable et il n’existe que tres peu de facteurs predictifs precoces. L’objectif etait de quantifier en peroperatoire la fluorescence du greffon revascularise pour predire sa survie a 3 mois (groupe re-TH− versus re-TH + ). Methodes Apres revascularisation du greffon, injection peroperatoire d’ICG (0,01 mg/kg) et acquisition par une camera infrarouge (Fluobeam®, Fluoptics), une analyse quantitative de la fluorescence parenchymateuse etait effectuee, ainsi qu’une modelisation multiparametrique de sa courbe de fluorescence (modele incluant le parametre A, reflet de l’evolution temporelle). Resultats Depuis juillet 2017, 76 TH ont ete incluses dont 6 receveurs dans le groupe re-TH+. Le parametre A etait significativement plus eleve dans le groupe re-TH+ (0,022 [0,016 ; 0,035]) versus re-TH− (0,012 [0,009 ; 0,015]), p = 0,009. Le parametre A etait le seul facteur predictif independant de survie du greffon a 3 mois. Une courbe ROC permettait de definir la meilleure valeur de A (0,0155) et de predire la survie du greffon a 3 mois avec une sensibilite de 83,3 % et une specificite de 78,6 % (AUC 0,824 [0,669 ; 0,979], p = 0,009). Conclusion L’analyse quantitative de la fluorescence a l’ICG du greffon est faisable pour predire sa survie a 3 mois avec de bonnes performances. Une etude ulterieure doit valider ces resultats sur une plus grande cohorte et evaluer l’impact clinique de cet outil.
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- 2020
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48. Transit time ultrasound perivascular flow probe technology is superior to MR imaging on hepatic blood flow measurement in a porcine model
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Mylene Wartenberg, Chloe Audebert, Emilie Bled, Petru Bucur, Irene E. Vignon-Clementel, Mohamed Bekheit, Hans Adriaensen, Eric Vibert, Centre hépato-biliaire (CHB), Assistance publique - Hôpitaux de Paris (AP-HP) (APHP)-Hôpital Paul Brousse-Institut National de la Santé et de la Recherche Médicale (INSERM), Institut National de la Santé et de la Recherche Médicale (INSERM), Numerical simulation of biological flows (REO), Sorbonne Université (SU)-Inria de Paris, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Jacques-Louis Lions (LJLL (UMR_7598)), Université Paris Diderot - Paris 7 (UPD7)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Diderot - Paris 7 (UPD7)-Centre National de la Recherche Scientifique (CNRS), Centre Hospitalier Régional Universitaire de Tours (CHRU TOURS), Physiologie de la reproduction et des comportements [Nouzilly] (PRC), Centre National de la Recherche Scientifique (CNRS)-Université de Tours-Institut Français du Cheval et de l'Equitation [Saumur]-Institut National de la Recherche Agronomique (INRA), ANR-13-TECS-0006,iFLOW,Estimation intraopératoire de la fonction hépatique par caméra fluorescente proche-infrarouge lors de chirurgies du foie(2013), Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Hôpital Paul Brousse-Institut National de la Santé et de la Recherche Médicale (INSERM), Centre Hospitalier Régional Universitaire de Tours (CHRU Tours), Institut National de la Recherche Agronomique (INRA)-Institut Français du Cheval et de l'Equitation [Saumur] (IFCE)-Université de Tours (UT)-Centre National de la Recherche Scientifique (CNRS), Institut National de la Recherche Agronomique (INRA)-Institut Français du Cheval et de l'Equitation [Saumur]-Université de Tours (UT)-Centre National de la Recherche Scientifique (CNRS), and Institut National de la Recherche Agronomique (INRA)-Institut Français du Cheval et de l'Equitation [Saumur]-Université de Tours-Centre National de la Recherche Scientifique (CNRS)
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Swine ,[SDV.IB.IMA]Life Sciences [q-bio]/Bioengineering/Imaging ,Transit time ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Hepatic Artery ,medicine.artery ,medicine ,Animals ,Hepatectomy ,Flow probe ,Liver surgery ,Porcine model ,Ultrasonography ,Aorta ,Hepatology ,business.industry ,Portal Vein ,Ultrasound ,Gastroenterology ,Large white ,Blood flow ,Mr imaging ,Magnetic Resonance Imaging ,3. Good health ,Transit time ultrasound probe ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Models, Animal ,Hepatic blood flow ,Female ,Nuclear medicine ,business ,Phase contrast MRI ,Artery ,Liver Circulation - Abstract
Background The hepatic hemodynamics is an essential parameter in surgical planning as well as in various disease processes. The transit time ultrasound (TTUS) perivascular flow probe technology is widely used in clinical practice to evaluate the hepatic inflow, yet invasive. The phase-contrast-MRI (PC-MRI) is not invasive and potentially applicable in assessing the hepatic blood flow. In the present study, we compared the hepatic inflow rates using the PC-MRI and the TTUS probe, and evaluated their predictive value of post-hepatectomy adverse events. Methods Eighteen large white pigs were anaesthetized for PC-MRI and approximately 75% hepatic resection was performed under a unified protocol. The blood flow was measured in the hepatic artery (Qha), the portal vein (Qpv), and the aorta above the celiac trunk (Qca) using PC-MRI, and was compared to the TTUS probe. The Bland-Altman method was conducted and a partial least squares regression (PLS) model was implemented. Results The mean Qpv measured in PC-MRI was 0.55 ± 0.12 L/min, and in the TTUS probe was 0.74 ± 0.17 L/min. Qca was 1.40 ± 0.47 L/min in the PC-MRI and 2.00 ± 0.60 L/min in the TTUS probe. Qha was 0.17 ± 0.10 L/min in the PC-MRI, and 0.13 ± 0.06 L/min in the TTUS probe. The Bland-Altman method revealed that the estimated bias of Qca in the PC-MRI was 32% (95% CI: −49% to 15%); Qha 17% (95% CI: −15% to 51%); and Qpv 40% (95% CI: −62% to 18%). The TTUS probe had a higher weight in predicting adverse outcomes after 75% resection compared to the PC-MRI (β= 0.35 and 0.43 vs β = 0.22 and 0.07, for tissue changes and premature death, respectively). Conclusions There is a tendency of the PC-MRI to underestimate the flow measured by the TTUS probes. The TTUS probe measures are more predictive of relevant post-hepatectomy outcomes.
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- 2018
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49. Predicted airway obstruction distribution based on dynamical lung ventilation data: a coupled modeling-machine learning methodology
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Nicolas Pozin, Céline Grandmont, Marine Pichelin, Spyridon Montesantos, Irene E. Vignon-Clementel, Ira Katz, Numerical simulation of biological flows (REO), Sorbonne Université (SU)-Inria de Paris, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Jacques-Louis Lions (LJLL (UMR_7598)), Université Paris Diderot - Paris 7 (UPD7)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Diderot - Paris 7 (UPD7)-Centre National de la Recherche Scientifique (CNRS), Sorbonne Université (SU), Air Liquide Healthcare, Air Liquide [Siège Social], Lafayette College [Easton], Laboratoire Jacques-Louis Lions (LJLL (UMR_7598)), Université Paris Diderot - Paris 7 (UPD7)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), ANR-11-TECS-0006,OxHelease,Impact de l'inhalation de l'hélium-oxygène sur la ventilation, l'oxygénation sanguine, le dépôt d'aérosol dans les maladies respiratoires chroniques obstructives: étude des cas de l'asthme et de l'emphysème(2011), and Sorbonne Universités
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4D ventilation data ,Ashtma modeling ,Computer science ,Biomedical Engineering ,Pulmonary disease ,Machine learning ,computer.software_genre ,030218 nuclear medicine & medical imaging ,Pulmonary Disease, Chronic Obstructive ,03 medical and health sciences ,0302 clinical medicine ,medicine ,[INFO.INFO-IM]Computer Science [cs]/Medical Imaging ,Humans ,[PHYS.MECA.BIOM]Physics [physics]/Mechanics [physics]/Biomechanics [physics.med-ph] ,Lung ,Molecular Biology ,Lung ventilation ,Lung modeling ,business.industry ,Applied Mathematics ,Numerical diagnosis tool ,Airway obstruction ,respiratory system ,medicine.disease ,Asthma ,respiratory tract diseases ,Airway Obstruction ,Tree (data structure) ,medicine.anatomical_structure ,Computational Theory and Mathematics ,Plugs identification ,Modeling and Simulation ,Inverse problem ,Artificial intelligence ,Detection rate ,Pulmonary Ventilation ,Airway ,business ,computer ,030217 neurology & neurosurgery ,Software ,Distribution (differential geometry) - Abstract
In asthma and chronic obstructive pulmonary disease, some airways of the tracheobronchial tree can be constricted, from moderate narrowing up to closure. Those pathological patterns of obstructions affect the lung ventilation distribution. While some imaging techniques enable visualization and quantification of constrictions in proximal generations, no noninvasive technique exists to provide the airway morphology and obstruction distribution in distal areas. In this work, we propose a method that exploits lung ventilation measures to access positions of airway obstructions (restrictions and closures) in the tree. This identification approach combines a lung ventilation model, in which a 0D tree is strongly coupled to a 3D parenchyma description, along with a machine learning approach. On the basis of synthetic data generated with typical temporal and spatial resolutions as well as reconstruction errors, we obtain very encouraging results of the obstruction distribution, with a detection rate higher than 85%.
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- 2018
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50. Influence of caval reconstructions on venous outflow during liver transplantation: a numerical flow simulation study on real patients and virtual cases
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Florian Joly, N. Bousaleh, Irene E. Vignon-Clementel, Maïté Lewin, Nicolas Golse, and Eric Vibert
- Subjects
medicine.medical_specialty ,business.industry ,medicine.medical_treatment ,0206 medical engineering ,Biomedical Engineering ,Liver failure ,Hemodynamics ,Bioengineering ,030229 sport sciences ,02 engineering and technology ,General Medicine ,Partial hepatectomy ,Liver transplantation ,Partial resection ,020601 biomedical engineering ,Computer Science Applications ,Human-Computer Interaction ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Cardiology ,Medicine ,Outflow ,business ,Cause of death - Abstract
Post-operative liver failure (POLF) remains the leading cause of death after partial hepatectomy, the partial resection of the liver. Similarly, after liver transplantation (LT) of a whole or parti...
- Published
- 2019
- Full Text
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