23 results on '"Heyman, Jefri"'
Search Results
2. AtF-box gene expression fine-tunes Arabidopsis thaliana root development.
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Zhiponova, Miroslava, Heyman, Jefri, De Veylder, Lieven, and Iantcheva, Anelia
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ROOT development , *ARABIDOPSIS thaliana , *UBIQUITIN ligases , *GENE expression , *ROOT growth , *CELL division , *PROTEOLYSIS - Abstract
Root growth is under constant dynamic regulation for optimal response to developmental and environmental stimuli. At the posttranslational level, protein abundance is controlled by proteasomal degradation of targeted proteins. The substrate-specificity of this process is exerted by F-box proteins taking part in the SCFs (SKP1-CULLIN-F-box protein ligase) E3 ubiquitin protein ligases. In this work an Arabidopsis thaliana AtF-box, which regulates leucine homeostasis, was analyzed in the context of root development. Publicly available data sets and reporter lines revealed AtF-box expression in the primary and lateral roots. Aberrant stem cell divisions were detected in the distal stem cells (DSC) of the AtF-box knockdown lines (AtF-boxamiRNA), suggesting that AtF-box is required for the optimal cell division. Microscopic observations revealed the premature exit from cell proliferation and slower cell division activity. Conversely, in AtF-box overexpression (AtFboxOE) lines the cell division phase was prolonged. The root growth rate was respectively reduced and enhanced in the AtF-boxamiRNA and AtF-boxOE lines compared to the control. From the results of these studies, we concluded that the AtF-box gene is important for the fine-tuning of root growth. [ABSTRACT FROM AUTHOR]
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- 2021
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3. Cyclin CYCA3;4 Is a Postprophase Target of the APC/CCCS52A2 E3-Ligase Controlling Formative Cell Divisions in Arabidopsis.
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Willems, Alex, Heyman, Jefri, Eekhout, Thomas, Achon, Ignacio, Pedroza-Garcia, Jose Antonio, Zhu, Tingting, Li, Lei, Vercauteren, Ilse, Daele, Hilde Van den, van de Cotte, Brigitte, Smet, Ive De, and Veylder, Lieven De
- Abstract
The anaphase promoting complex/cyclosome (APC/C) controls unidirectional progression through the cell cycle by marking key cell cycle proteins for proteasomal turnover. Its activity is temporally regulated by the docking of different activating subunits, known in plants as CELL DIVISION PROTEIN20 (CDC20) and CELL CYCLE SWITCH52 (CCS52). Despite the importance of the APC/C during cell proliferation, the number of identified targets in the plant cell cycle is limited. Here, we used the growth and meristem phenotypes of Arabidopsis (Arabidopsis thaliana) CCS52A2-deficient plants in a suppressor mutagenesis screen to identify APC/CCCS52A2 substrates or regulators, resulting in the identification of a mutant cyclin CYCA3;4 allele. CYCA3;4 deficiency partially rescues the ccs52a2-1 phenotypes, whereas increased CYCA3;4 levels enhance the scored ccs52a2-1 phenotypes. Furthermore, whereas the CYCA3;4 protein is promptly broken down after prophase in wild-type plants, it remains present in later stages of mitosis in ccs52a2-1 mutant plants, marking it as a putative APC/CCCS52A2 substrate. Strikingly, increased CYCA3;4 levels result in aberrant root meristem and stomatal divisions, mimicking phenotypes of plants with reduced RETINOBLASTOMA-RELATED PROTEIN1 (RBR1) activity. Correspondingly, RBR1 hyperphosphorylation was observed in CYCA3;4 gain-of-function plants. Our data thus demonstrate that an inability to timely destroy CYCA3;4 contributes to disorganized formative divisions, possibly in part caused by the inactivation of RBR1. [ABSTRACT FROM AUTHOR]
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- 2020
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4. Evolution of wound-activated regeneration pathways in the plant kingdom.
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Liang, Yuanke, Heyman, Jefri, Lu, Ran, and De Veylder, Lieven
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REGENERATION (Botany) , *REGENERATION (Biology) , *INTEGRAL functions , *TRANSCRIPTION factors , *AGRICULTURE - Abstract
Regeneration serves as a self-protective mechanism that allows a tissue or organ to recover its entire form and function after suffering damage. However, the regenerative capacity varies greatly within the plant kingdom. Primitive plants frequently display an amazing regenerative ability as they have developed a complex system and strategy for long-term survival under extreme stress conditions. The regenerative ability of dicot species is highly variable, but that of monocots often exhibits extreme recalcitrance to tissue replenishment. Recent studies have revealed key factors and signals that affect cell fate during plant regeneration, some of which are conserved among the plant lineage. Among these, several members of the ETHYLENE RESPONSE FACTOR (ERF) transcription factors have been implicated in wound signaling, playing crucial roles in the regenerative mechanisms after different types of wounding. An understanding of plant regeneration may ultimately lead to an increased regenerative potential of recalcitrant species, producing more high-yielding, multi-resistant and environmentally friendly crops and ensuring the long-term development of global agriculture. [ABSTRACT FROM AUTHOR]
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- 2023
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5. Emerging role of the plant ERF transcription factors in coordinating wound defense responses and repair.
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Heyman, Jefri, Canher, Balkan, Bisht, Anchal, Christiaens, Fien, and De Veylder, Lieven
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WOUND healing , *TRANSCRIPTION factors , *CELL proliferation , *PLANTS - Abstract
Plants react to wounding through the activation of both defense and repair pathways, but how these two responses are coordinated is unclear. Here, we put forward the hypothesis that diverse members of the subfamily X of the plant-specific ethylene response factor (ERF) transcription factors coordinate stress signaling with the activation of wound repair mechanisms. Moreover, we highlight the observation that tissue repair is strongly boosted through the formation of a heterodimeric protein complex that comprises ERF and transcription factors of the GRAS domain type. This interaction turns ERFs into highly potent and stress-responsive activators of cell proliferation. The potency to induce stem cell identity suggests that these heterodimeric transcription factor complexes could become valuable tools to increase crop regeneration and transformation efficiency. [ABSTRACT FROM AUTHOR]
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- 2018
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6. Tissue-Specific Control of the Endocycle by the Anaphase Promoting Complex/Cyclosome Inhibitors UVI4 and DEL1.
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Heyman, Jefri, Polyn, Stefanie, Eekhout, Thomas, and De Veylder, Lieven
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The endocycle represents a modified mitotic cell cycle that in plants is often coupled to cell enlargement and differentiation. Endocycle onset is controlled by activity of the Anaphase Promoting Complex/Cyclosome (APC/C), a multisubunit E3 ubiquitin ligase targeting cell-cycle factors for destruction. CELL CYCLE SWITCH52 (CCS52) proteins represent rate-limiting activator subunits of the APC/C. In Arabidopsis (Arabidopsis thaliana), mutations in either CCS52A1 or CCS52A2 activators result in a delayed endocycle onset, whereas their overexpression triggers increased DNA ploidy levels. Here, the relative contribution of the APC/CCCS52A1 and APC/CCCS52A2 complexes to different developmental processes was studied through analysis of their negative regulators, being the ULTRAVIOLET-B-INSENSITIVE4 protein and the DP-E2F-Like1 transcriptional repressor, respectively. Our data illustrate cooperative activity of the APC/CCCS52A1 and APC/CCCS52A2 complexes during root and trichome development, but functional interdependency during leaf development. Furthermore, we found APC/CCCS52A1 activity to control CCS52A2 expression. We conclude that interdependency of CCS52A-controlled APC/C activity is controlled in a tissue-specific manner. [ABSTRACT FROM AUTHOR]
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- 2017
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7. Arabidopsis COPPER MODIFIED RESISTANCE1/PATRONUS1 is essential for growth adaptation to stress and required for mitotic onset control.
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Juraniec, Michal, Heyman, Jefri, Schubert, Veit, Salis, Pietrino, De Veylder, Lieven, and Verbruggen, Nathalie
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ARABIDOPSIS thaliana , *MITOSIS , *EFFECT of copper on plants , *EFFECT of stress on plants , *DISEASE resistance of plants , *GENE expression in plants , *PHYSIOLOGICAL adaptation , *PLANT cell cycle , *PHYSIOLOGY , *PLANTS - Abstract
• The mitotic checkpoint (MC) guards faithful sister chromatid segregation by monitoring the attachment of spindle microtubules to the kinetochores. When chromosome attachment errors are detected, MC delays the metaphase-to-anaphase transition through the inhibition of the anaphase-promoting complex/cyclosome (APC/C) ubiquitin ligase. In contrast to yeast and mammals, our knowledge on the proteins involved in MC in plants is scarce. • Transient synchronization of root tips as well as promoter-reporter gene fusions were performed to analyze temporal and spatial expression of COPPER MODIFIED RESISTANCE1/PATRONUS1 (CMR1/PANS1) in developing Arabidopsis thaliana seedlings. Functional analysis of the gene was carried out, including CYCB1;2 stability in CMR1/PANS1 knockout and overexpressor background as well as metaphase-anaphase chromosome status. • CMR1/PANS1 is transcriptionally active during M phase. Its deficiency provokes premature cell cycle exit and in consequence a rapid consumption of the number of meristematic cells in particular under stress conditions that are known to affect spindle microtubules. Root growth impairment is correlated with a failure to delay the onset of anaphase, resulting in anaphase bridges and chromosome missegregation. CMR1/PANS1 overexpression stabilizes the mitotic CYCB1;2 protein. • Likely, CMR1/PANS1 coordinates mitotic cell cycle progression by acting as an APC/C inhibitor and plays a key role in growth adaptation to stress. [ABSTRACT FROM AUTHOR]
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- 2016
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8. A quiescent path to plant longevity.
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Heyman, Jefri, Kumpf, Robert P., and De Veylder, Lieven
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PLANT longevity , *GREAT Basin bristlecone pine , *PLANT cell differentiation , *REGENERATION (Botany) , *ECOLOGICAL niche , *MITOSIS , *PLANTS - Abstract
The giant sequoia and the bristlecone pine trees are capable of living up to several hundreds or even thousands of years. Plants achieve this longevity by regenerating stem cells capable of giving rise to all differentiated cells. Plant stem cells reside in specific niches with high mitotic activity that are known as meristems. Remarkably, at the center of the root stem cell niche (SCN) resides a group of mitotically inactive cells known as the quiescent center (QC). Recent studies suggest that stress-related phytohormones and DNA damage can initiate QC cell division, resulting in the replenishment of stem cells surrounding the QC. We therefore propose that the QC represents a pool of backup cells that serve to replace damaged stem cells, thereby contributing to plant longevity. [ABSTRACT FROM AUTHOR]
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- 2014
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9. Plant lineage-specific PIKMIN1 drives APC/CCCS52A2 E3-ligase activity-dependent cell division.
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Willems, Alex, Yuanke Liang, Heyman, Jefri, Depuydt, Thomas, Eekhout, Thomas, Canher, Balkan, Van den Daele, Hilde, Vercauteren, Ilse, Vandepoele, Klaas, and De Veylder, Lieven
- Abstract
The anaphase-promoting complex/cyclosome (APC/C) marks key cell cycle proteins for proteasomal breakdown, thereby ensuring unidirectional progression through the cell cycle. Its target recognition is temporally regulated by activating subunits, one of which is called CELL CYCLE SWITCH 52 A2 (CCS52A2). We sought to expand the knowledge on the APC/C by using the severe growth phenotypes of CCS52A2-deficient Arabidopsis (Arabidopsis thaliana) plants as a readout in a suppressor mutagenesis screen, resulting in the identification of the previously undescribed gene called PIKMIN1 (PKN1). PKN1 deficiency rescues the disorganized root stem cell phenotype of the ccs52a2-1 mutant, whereas an excess of PKN1 inhibits the growth of ccs52a2-1 plants, indicating the need for control of PKN1 abundance for proper development. Accordingly, the lack of PKN1 in a wild-type background negatively impacts cell division, while its systemic overexpression promotes proliferation. PKN1 shows a cell cycle phase-dependent accumulation pattern, localizing to microtubular structures, including the preprophase band, the mitotic spindle, and the phragmoplast. PKN1 is conserved throughout the plant kingdom, with its function in cell division being evolutionarily conserved in the liverwort Marchantia polymorpha. Our data thus demonstrate that PKN1 represents a novel, plant-specific protein with a role in cell division that is likely proteolytically controlled by the CCS52A2-activated APC/C. [ABSTRACT FROM AUTHOR]
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- 2023
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10. ERF115 Controls Root Quiescent Center Cell Division and Stem Cell Replenishment.
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Heyman, Jefri, Cools, Toon, Vandenbussche, Filip, Heyndrickx, Ken S., Van Leene, Jelle, Vercauteren, Ilse, Vanderauwera, Sandy, Vandepoele, Klaas, De Jaeger, Geert, Van Der Straeten, Dominique, and De Veylder, Lieven
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CELL division , *CELL cycle , *PROTEOLYSIS , *TRANSCRIPTION factors , *STEM cell transplantation , *GENE expression , *PEPTIDE hormones , *BRASSINOSTEROIDS - Abstract
The quiescent center (QC) plays an essential role during root development by creating a microenvironment that preserves the stem cell fate of its surrounding cells. Despite being surrounded by highly mitotic active cells, QC cells self-renew at a low proliferation rate. Here, we identified the ERF115 transcription factor as a rate-limiting factor of QC cell division, acting as a transcriptional activator of the phytosulfokine PSK5 peptide hormone. ERF115 marks QC cell division but is restrained through proteolysis by the APC/CCCS52A2 ubiquitin ligase, whereas QC proliferation is driven by brassinosteroid-dependent ERF115 expression. Together, these two antagonistic mechanisms delimit ERF115 activity, which is called upon when surrounding stem cells are damaged, revealing a cell cycle regulatory mechanism accounting for stem cell niche longevity. [ABSTRACT FROM AUTHOR]
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- 2013
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11. The Anaphase-Promoting Complex/Cyclosome in Control of Plant Development.
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Heyman, Jefri and De Veylder, Lieven
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ANAPHASE , *PROMOTERS (Genetics) , *PLANT development , *PLANT cell cycle , *UBIQUITIN ligases , *PLANT enzymes , *GAMETOGENESIS , *PLANTS - Abstract
Temporal controlled degradation of key cell division proteins ensures a correct onset of the different cell cycle phases and exit from the cell division program. In light of the cell cycle, the Anaphase-Promoting Complex/Cyclosome (APC/C) is an important conserved multi-subunit ubiquitin ligase, marking targets for degradation by the 26S proteasome. However, whereas the APC/C has been studied extensively in yeast and mammals, only in the last decade has the plant APC/C started to unveil its secrets. Research results have shown the importance of the APC/C core complex and its activators during gametogenesis, growth, hormone signaling, symbiotic interactions, and endoreduplication onset. In addition, recently, the first plant APC/C inhibitors have been reported, allowing a fine-tuning of APC/C activity during the cell cycle. Together with the identification of the first APC/C targets, a picture emerges of APC/C activity being essential for many different developmental processes. [ABSTRACT FROM AUTHOR]
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- 2012
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12. OSD1 Promotes Meiotic Progression via APC/C Inhibition and Forms a Regulatory Network with TDM and CYCA1;2/TAM.
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Cromer, Laurence, Heyman, Jefri, Touati, Sandra, Harashima, Hirofumi, Araou, Emilie, Girard, Chloe, Horlow, Christine, Wassmann, Katja, Schnittger, Arp, De Veylder, Lieven, and Mercier, Raphael
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MEIOSIS , *DNA replication , *CYCLIN-dependent kinases , *CELL cycle , *GENETICS - Abstract
Cell cycle control is modified at meiosis compared to mitosis, because two divisions follow a single DNA replication event. Cyclin-dependent kinases (CDKs) promote progression through both meiosis and mitosis, and a central regulator of their activity is the APC/C (Anaphase Promoting Complex/Cyclosome) that is especially required for exit from mitosis. We have shown previously that OSD1 is involved in entry into both meiosis I and meiosis II in Arabidopsis thaliana; however, the molecular mechanism by which OSD1 controls these transitions has remained unclear. Here we show that OSD1 promotes meiotic progression through APC/C inhibition. Next, we explored the functional relationships between OSD1 and the genes known to control meiotic cell cycle transitions in Arabidopsis. Like osd1, cyca1;2/tam mutation leads to a premature exit from meiosis after the first division, while tdm mutants perform an aberrant third meiotic division after normal meiosis I and II. Remarkably, while tdm is epistatic to tam, osd1 is epistatic to tdm. We further show that the expression of a non-destructible CYCA1;2/TAM provokes, like tdm, the entry into a third meiotic division. Finally, we show that CYCA1;2/TAM forms an active complex with CDKA;1 that can phosphorylate OSD1 in vitro. We thus propose that a functional network composed of OSD1, CYCA1;2/TAM, and TDM controls three key steps of meiotic progression, in which OSD1 is a meiotic APC/C inhibitor. [ABSTRACT FROM AUTHOR]
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- 2012
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13. Arabidopsis ULTRAVIOLET-B-INSENSITIVE4 Maintains Cell Division Activity by Temporal Inhibition of the Anaphase-Promoting Complex/Cyclosome.
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Heyman, Jefri, Daele, Hilde Van den, Wit, Kevin De, Boudolf, Véronique, Berckmans, Barbara, Verkest, Aurine, Kamei, Claire Lessa Alvim, Jaeger, Geert De, Koncz, Csaba, and Veylder, Lieven De
- Abstract
The anaphase-promoting complex/cyclosome (APC/C) is a multisubunit ubiquitin ligase that regulates progression through the cell cycle by marking key cell division proteins for destruction. To ensure correct cell cycle progression, accurate timing of APC/C activity is important, which is obtained through its association with both activating and inhibitory subunits. However, although the APC/C is highly conserved among eukaryotes, no APC/C inhibitors are known in plants. Recently, we have identified ULTRAVIOLET-B-INSENSITIVE4 (UVI4) as a plant-specific component of the APC/C. Here, we demonstrate that UVI4 uses conserved APC/C interaction motifs to counteract the activity of the CELL CYCLE SWITCH52 A1 (CCS52A1) activator subunit, inhibiting the turnover of the A-type cyclin CYCA2;3. UVI4 is expressed in an S phase-dependent fashion, likely through the action of E2F transcription factors. Correspondingly, uvi4 mutant plants failed to accumulate CYCA2;3 during the S phase and prematurely exited the cell cycle, triggering the onset of the endocycle. We conclude that UVI4 regulates the temporal inactivation of APC/C during DNA replication, allowing CYCA2;3 to accumulate above the level required for entering mitosis, and thereby regulates the meristem size and plant growth rate. [ABSTRACT FROM AUTHOR]
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- 2011
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14. The regeneration conferring transcription factor complex ERF115‐PAT1 coordinates a wound‐induced response in root‐knot nematode induced galls.
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Ribeiro, Cleberson, de Melo, Bruno Paes, Lourenço‐Tessutti, Isabela Tristan, Ballesteros, Helkin Forero, Ribeiro, Karla Veloso Gonçalves, Menuet, Killian, Heyman, Jefri, Hemerly, Adriana, de Sá, Maria Fatima Grossi, De Veylder, Lieven, and de Almeida Engler, Janice
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ROOT-knot nematodes , *TRANSCRIPTION factors , *ROOT-knot , *REGENERATION (Biology) , *WOUND healing , *GALLS (Botany) - Abstract
Summary: The establishment of root‐knot nematode (RKN; Meloidogyne spp.) induced galls in the plant host roots likely involves a wound‐induced regeneration response. Confocal imaging demonstrates physical stress or injury caused by RKN infection during parasitism in the model host Arabidopsis thaliana.The ERF115‐PAT1 heterodimeric transcription factor complex plays a recognized role in wound‐induced regeneration. ERF115 and PAT1 expression flanks injured gall cells likely driving mechanisms of wound healing, implying a local reactivation of cell division which is also hypothetically involved in gall genesis.Herein, functional investigation revealed that ectopic ERF115 expression resulted in premature induction of galls, and callus formation adjacent to the expanding female RKN was seen upon PAT1 upregulation. Smaller galls and less reproduction were observed in ERF115 and PAT1 knockouts. Investigation of components in the ERF115 network upon overexpression and knockdown by qRT‐PCR suggests it contributes to steer gall wound‐sensing and subsequent competence for tissue regeneration. High expression of CYCD6;1 was detected in galls, and WIND1 overexpression resulted in similar ERF115OE gall phenotypes, also showing faster gall induction.Along these lines, we show that the ERF115‐PAT1 complex likely coordinates stress signalling with tissue healing, keeping the gall functional until maturation and nematode reproduction. [ABSTRACT FROM AUTHOR]
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- 2024
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15. PAT1-type GRAS-domain proteins control regeneration by activating DOF3.4 to drive cell proliferation in Arabidopsis roots.
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Bisht, Anchal, Eekhout, Thomas, Canher, Balkan, Lu, Ran, Vercauteren, Ilse, Jaeger, Geert De, Heyman, Jefri, and Veylder, Lieven De
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CELL proliferation , *GENE expression , *CELL division , *TRANSCRIPTION factors , *ARABIDOPSIS , *PROTEINS , *ZINC-finger proteins - Abstract
Plant roots possess remarkable regenerative potential owing to their ability to replenish damaged or lost stem cells. ETHYLENE RESPONSE FACTOR 115 (ERF115), one of the key molecular elements linked to this potential, plays a predominant role in the activation of regenerative cell divisions. However, the downstream operating molecular machinery driving wound-activated cell division is largely unknown. Here, we biochemically and genetically identified the GRAS-domain transcription factor SCARECROW-LIKE 5 (SCL5) as an interaction partner of ERF115 in Arabidopsis thaliana. Although nonessential under control growth conditions, SCL5 acts redundantly with the related PHYTOCHROME A SIGNAL TRANSDUCTION 1 (PAT1) and SCL21 transcription factors to activate the expression of the DNA-BINDING ONE FINGER 3.4 (DOF3.4) transcription factor gene. DOF3.4 expression is wound-inducible in an ERF115-dependent manner and, in turn, activates D3-type cyclin expression. Accordingly, ectopic DOF3.4 expression drives periclinal cell division, while its downstream D3-type cyclins are essential for the regeneration of a damaged root. Our data highlight the importance and redundant roles of the SCL5, SCL21, and PAT1 transcription factors in wound-activated regeneration processes and pinpoint DOF3.4 as a key downstream element driving regenerative cell division. [ABSTRACT FROM AUTHOR]
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- 2023
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16. The regeneration factors ERF114 and ERF115 regulate auxin-mediated lateral root development in response to mechanical cues.
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Canher, Balkan, Lanssens, Fien, Zhang, Ai, Bisht, Anchal, Mazumdar, Shamik, Heyman, Jefri, Wolf, Sebastian, Melnyk, Charles W., and De Veylder, Lieven
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Plants show an unparalleled regenerative capacity, allowing them to survive severe stress conditions, such as injury, herbivory attack, and harsh weather conditions. This potential not only replenishes tissues and restores damaged organs but can also give rise to whole plant bodies. Despite the intertwined nature of development and regeneration, common upstream cues and signaling mechanisms are largely unknown. Here, we demonstrate that in addition to being activators of regeneration, ETHYLENE RESPONSE FACTOR 114 (ERF114) and ERF115 govern developmental growth in the absence of wounding or injury. Increased ERF114 and ERF115 activity enhances auxin sensitivity, which is correlated with enhanced xylem maturation and lateral root formation, whereas their knockout results in a decrease in lateral roots. Moreover, we provide evidence that mechanical cues contribute to ERF114 and ERF115 expression in correlation with BZR1-mediated brassinosteroid signaling under both regenerative and developmental conditions. Antagonistically, cell wall integrity surveillance via mechanosensory FERONIA signaling suppresses their expression under both conditions. Taken together, our data suggest a molecular framework in which cell wall signals and mechanical strains regulate organ development and regenerative responses via ERF114- and ERF115-mediated auxin signaling. The regeneration-driving transcription factors ERF114 and ERF115 were identified as positive regulators of lateral root formation. Expression of ERF114 and ERF115 is responsive to mechanical cues under both developmental and regenerative conditions, whereas the cell wall integrity sensor FERONIA suppresses their transcription. The data support a molecular framework in which cell wall signals and mechanical strains regulate organ development and regeneration. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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17. A common F-box gene regulates the leucine homeostasis of Medicago truncatula and Arabidopsis thaliana.
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Iantcheva, Anelia, Zhiponova, Miroslava, Revalska, Miglena, Heyman, Jefri, Dincheva, Ivayla, Badjakov, Ilian, De Geyter, Nathan, Boycheva, Irina, Goormachtig, Sofie, and De Veylder, Lieven
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LEUCINE metabolism , *PROTEIN metabolism , *HOMEOSTASIS , *GENETIC mutation , *GENE expression , *PLANTS , *ENZYMES - Abstract
The F-box domain is a conserved structural protein motif that most frequently interacts with the SKP1 protein, the core of the SCFs (SKP1-CULLIN-F-box protein ligase) E3 ubiquitin protein ligases. As part of the SCF complexes, the various F-box proteins recruit substrates for degradation through ubiquitination. In this study, we functionally characterized an F-box gene (MtF-box) identified earlier in a population of Tnt1 retrotransposon-tagged mutants of Medicago truncatula and its Arabidopsis thaliana homolog (AtF-box) using gain- and loss-of-function plants. We highlighted the importance of MtF-box in leaf development of M. truncatula. Protein–protein interaction analyses revealed the 2-isopropylmalate synthase (IPMS) protein as a common interactor partner of MtF-box and AtF-box, being a key enzyme in the biosynthesis pathway of the branched-chain amino acid leucine. For further detailed analysis, we focused on AtF-box and its role during the cell division cycle. Based on this work, we suggest a mechanism for the role of the studied F-box gene in regulation of leucine homeostasis, which is important for growth. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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18. Three-dimensional quantitative analysis of the Arabidopsis quiescent centre.
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Lu, Ran, Canher, Balkan, Bisht, Anchal, Heyman, Jefri, and Veylder, Lieven De
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STEM cell niches , *CELL division , *ARABIDOPSIS , *QUANTITATIVE research , *TRANSCRIPTION factors , *CYCLINS - Abstract
Quiescent centre (QC) cells represent an integral part of the root stem cell niche. They typically display a low division frequency that has been reported to be controlled by hormone signaling and different regulators, including the ETHYLENE RESPONSE FACTOR 115 (ERF115) transcription factor and D-type cyclins. Here, we applied a three-dimensional (3D) imaging to visualize the Arabidopsis QC cell number, volume and division patterns, including visualization of anticlinal divisions that cannot be deduced from longitudinal 2D imaging. We found that 5-day-old seedlings possess on average eight QC cells which are organized in a monolayered disc. In a period of 7 d, half of the QC cells undergo anticlinal division in a largely invariant space. Ectopic expression of ERF115 and CYCLIN D1;1 (CYCD1;1) promote both anticlinal and periclinal QC cell divisions, the latter resulting in a dual-layered QC zone holding up to 2-fold more QC cells compared with the wild type. In contrast, application of cytokinin or ethylene results in an increase in the number of periclinal, but a decrease in anticlinal QC divisions, suggesting that they control the orientation of QC cell division. Our data illustrate the power of 3D visualization in revealing unexpected QC characteristics. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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19. Wounding Triggers Callus Formation via Dynamic Hormonal and Transcriptional Changes.
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Momoko Ikeuchi, Akira Iwase, Bart Rymen, Lambolez, Alice, Mikiko Kojima, Yumiko Takebayashi, Heyman, Jefri, Shunsuke Watanabe, Mitsunori Seo, de Veylder, Lieven, Hitoshi Sakakibara, and Keiko Sugimoto
- Abstract
Wounding is a primary trigger of organ regeneration, but how wound stress reactivates cell proliferation and promotes cellular reprogramming remains elusive. In this study, we combined transcriptome analysis with quantitative hormonal analysis to investigate how wounding induces callus formation in Arabidopsis (Arabidopsis thaliana). Our time course RNA-seq analysis revealed that wounding induces dynamic transcriptional changes, starting from rapid stress responses followed by the activation of metabolic processes and protein synthesis and subsequent activation of cell cycle regulators. Gene ontology analyses further uncovered that wounding modifies the expression of hormone biosynthesis and response genes, and quantitative analysis of endogenous plant hormones revealed accumulation of cytokinin prior to callus formation. Mutants defective in cytokinin synthesis and signaling display reduced efficiency in callus formation, indicating that de novo synthesis of cytokinin is critical for wound-induced callus formation. We further demonstrate that type-B ARABIDOPSIS RESPONSE REGULATOR-mediated cytokinin signaling regulates the expression of CYCLIN D3;1 (CYCD3;1) and that mutations in CYCD3;1 and its homologs CYCD3;2 and 3 cause defects in callus formation. In addition to these hormone-mediated changes, our transcriptome data uncovered that wounding activates multiple developmental regulators, and we found novel roles of ETHYLENE RESPONSE FACTOR 115 and PLETHORA3 (PLT3), PLT5, and PLT7 in callus generation. All together, these results provide novel mechanistic insights into how wounding reactivates cell proliferation during callus formation. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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20. It's Time for Some "Site"-Seeing: Novel Tools to Monitor the Ubiquitin Landscape in Arabidopsis thaliana.
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Walton, Alan, Stes, Elisabeth, Cybulski, Nicolas, Bel, Michiel Van, Iñigo, Sabrina, Durand, Astrid Nagels, Timmerman, Evy, Heyman, Jefri, Pauwels, Laurens, Veylder, Lieven De, Goossens, Alain, Smet, Ive De, Coppens, Frederik, Goormachtig, Sofie, and Gevaert, Kris
- Abstract
Ubiquitination, the covalent binding of the small protein modifier ubiquitin to a target protein, is an important and frequently studied posttranslational protein modification. Multiple reports provide useful insights into the plant ubiquitinome, but mostly at the protein level without comprehensive site identification. Here, we implemented ubiquitin combined fractional diagonal chromatography (COFRADIC) for proteome-wide ubiquitination site mapping on Arabidopsis thaliana cell cultures. We identified 3009 sites on 1607 proteins, thereby greatly increasing the number of known ubiquitination sites in this model plant. Finally, The Ubiquitination Site tool (http://bioinformatics.psb.ugent.be/webtools/ubiquitin%5fviewer/) gives access to the obtained ubiquitination sites, not only to consult the ubiquitination status of a given protein, but also to conduct intricate experiments aiming to study the roles of specific ubiquitination events. Together with the antibodies recognizing the ubiquitin remnant motif, ubiquitin COFRADIC represents a powerful tool to resolve the ubiquitination maps of numerous cellular processes in plants. [ABSTRACT FROM AUTHOR]
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- 2016
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21. Deficiency of the Arabidopsis Helicase RTEL1 Triggers a SOG1-Dependent Replication Checkpoint in Response to DNA Cross-Links.
- Author
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Hu, Zhubing, Cools, Toon, Kalhorzadeh, Pooneh, Heyman, Jefri, and Veylder, Lieven De
- Abstract
To maintain genome integrity, DNA replication is executed and regulated by a complex molecular network of numerous proteins, including helicases and cell cycle checkpoint regulators. Through a systematic screening for putative replication mutants, we identified an Arabidopsis thaliana homolog of human Regulator of Telomere Length 1 (RTEL1), which functions in DNA replication, DNA repair, and recombination. RTEL1 deficiency retards plant growth, a phenotype including a prolonged S-phase duration and decreased cell proliferation. Genetic analysis revealed that rtel1 mutant plants show activated cell cycle checkpoints, specific sensitivity to DNA cross-linking agents, and increased homologous recombination, but a lack of progressive shortening of telomeres, indicating that RTEL1 functions have only been partially conserved between mammals and plants. Surprisingly, RTEL1 deficiency induces tolerance to the deoxynucleotide-depleting drug hydroxyurea, which could be mimicked by DNA cross-linking agents. This resistance does not rely on the essential replication checkpoint regulator WEE1 but could be blocked by a mutation in the SOG1 transcription factor. Taken together, our data indicate that RTEL1 is required for DNA replication and that its deficiency activates a SOG1-dependent replication checkpoint. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
22. The ASH1-RELATED3 SET-Domain Protein Controls Cell Division Competence of the Meristem and the Quiescent Center of the Arabidopsis Primary Root.
- Author
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Kumpf, Robert, Thorstensen, Tage, Rahman, Mohummad Aminur, Heyman, Jefri, Nenseth, H. Zeynep, Lammens, Tim, Herrmann, Ullrich, Swarup, Ranjan, Veiseth, Silje Veie, Emberland, Gitika, Bennett, Malcolm J., De Veylder, Lieven, and Aalen, Reidunn B.
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PLANT root physiology , *CELL division , *MERISTEMS , *ARABIDOPSIS , *PLANT physiology research , *PLANTS - Abstract
The stem cell niche of the Arabidopsis (Arabidopsis thaliana) primary root apical meristem is composed of the quiescent (or organizing) center surrounded by stem (initial) cells for the different tissues. Initial cells generate a population of transit-amplifying cells that undergo a limited number of cell divisions before elongating and differentiating. It is unclear whether these divisions occur stochastically or in an orderly manner. Using the thymidine analog 5-ethynyl-2'-deoxyuridine to monitor DNA replication of cells of Arabidopsis root meristems, we identified a pattern of two, four, and eight neighboring cells with synchronized replication along the cortical, epidermal, and endodermal cell files, suggested to be daughters, granddaughters, and great-granddaughters of the direct progeny of each stem cell. Markers of mitosis and cytokinesis were not present in the region closest to the transition zone where the cells start to elongate, suggesting that great-granddaughter cells switch synchronously from the mitotic cell cycle to endoreduplication. Mutations in the stem cell niche-expressed ASH1-RELATED3 (ASHR3) gene, encoding a SET-domain protein conferring histone H3 lysine-36 methylation, disrupted this pattern of coordinated DNA replication and cell division and increased the cell division rate in the quiescent center. E2Fa/E2Fb transcription factors controlling the Gl-to-S-phase transition regulate ASHR3 expression and bind to the ASHR3 promoter, substantiating a role for ASHR3 in cell division control. The reduced length of the root apical meristem and primary root of the mutant ashr3-1 indicate that synchronization of replication and cell divisions is required for normal root growth and development. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
23. Centromeric Cohesion Is Protected Twice at Meiosis, by SHUGOSHINs at Anaphase I and by PATRONUS at Interkinesis.
- Author
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Cromer, Laurence, Jolivet, Sylvie, Horlow, Christine, Chelysheva, Liudmila, Heyman, Jefri, De?Jaeger, Geert, Koncz, Csaba, De?Veylder, Lieven, and Mercier, Raphael
- Subjects
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COHESINS , *MEIOSIS , *ANAPHASE , *CHROMOSOME segregation , *PLOIDY , *CHROMATIDS , *CENTROMERE - Abstract
Summary: Background: At meiosis, two successive rounds of chromosome segregation lead to ploidy halving. This is achieved through a stepwise release of sister chromatid cohesion, along chromosome arms to allow homolog segregation at anaphase I and at centromeres to allow sister chromatid segregation at anaphase II. Cohesins, the protein complex that ensures cohesion, must then be protected at centromeres throughout meiosis, until the onset of anaphase II. Members of the Shugoshin protein family have been shown to protect centromeric cohesins at anaphase I, but much less is known about the protection of cohesion during interkinesis, the stage between meiosis I and meiosis II. Results: Here, we (1) show that both Arabidopsis SHUGOSHINs paralogs are required for complete protection of centromeric cohesins during meiosis I, without apparent somatic function, and (2) identified PATRONUS (PANS1), a novel protein required for protection of meiotic centromeric cohesion. Although AtSGO1 and AtSGO2 protect centromeric cohesion during anaphase I, PANS1 is required at a later stage, during interkinesis. Additionally, we identified PANS2, a paralog of PANS1, whose mutation is synthetically lethal with pans1 suggesting that PANS genes are also essential for mitosis. PANS1 interacts directly with the CDC27b and the CDC20.1 subunit of the Anaphase Promoting Complex (APC/C), in a manner suggesting that PANS1 could be both a regulator and a target of the APC/C. Conclusions: This study reveals that centromeric cohesion is actively protected at two successive stages of meiosis, by SHUGOSHINs at anaphase I and by PATRONUS at interkinesis. [Copyright &y& Elsevier]
- Published
- 2013
- Full Text
- View/download PDF
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