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We present the results of a study of the connectivity between Pacific cod spawning and nursery areas, and settlement of Pacific cod in the Gulf of Alaska. This work was conducted to address the hypothesis that spatial and temporal patterns of recruitment are related to variability in connectivity between spawning and nursery areas. To examine this hypothesis, we developed a Lagrangian, biophysical, individual-based model of Pacific cod early life history and dispersal using the Dispersal Model for Early Life Stages (DisMELS) framework. This model is driven by currents and scalars such as temperature from a version of the Regional Oceanographic Model System (ROMS) developed for the Gulf of Alaska. Results of our study show connectivity patterns predicted by the model that agree with our understanding (based on genetic analyses) that there is a high degree of localized retention in Pacific cod. The results indicate that the Shumagin Islands and Prince William Sound regions may serve as important collectors of Pacific cod recruits from upstream spawning areas. We also find correlations between individual-based model outputs and several large-scale climate indicators that appear to show settlement in several important nursery areas, and recruitment overall, are positively affected by slower gyre circulation in the Gulf of Alaska. We hypothesize that this is due to enhancement of retention, settlement in the Shumagin Island region, and reduction of transport of young cod out of the Gulf of Alaska to the southwest. [ABSTRACT FROM AUTHOR]

Abstract: Modeling the coastal Gulf of Alaska (CGOA) is complicated by the highly diverse physical and biological features influencing productivity and energy flow through the region. The GOA consists of the offshore oceanic environment, characterized by iron limitation, high-nutrients and low-chlorophyll. The coastal environment is consistently downwelling, with high iron levels from glacial melt water and runoff, but lower concentrations of macronutrients, and with a spring bloom, nutrient depletion cycle (low-nutrient, high-chlorophyll). Cross-shelf movement of water masses mixes coastal and oceanic ecosystem elements. Simulations and field data indicate that the minimum model complexity necessary to characterize lower trophic-level production and biomass in the offshore and coastal regions includes 10 boxes: iron, nitrate, ammonium, small phytoplankton, large phytoplankton, small microzooplankton, large microzooplankton, small copepods, large oceanic copepods and detritus, with copepod mortality as a model closure term. We present the model structure, equations required (and initial parameters used) to simulate onshore and offshore lower trophic-level production in the Gulf of Alaska, along with the information from field data and simulations used to construct the model. We show the results of simulations with and without iron, and with and without two size classes of phytoplankton. These simulations indicate that our method of inclusion of iron works well to distinguish the coastal and the oceanic ecosystems, and that the inclusion of two size categories of phytoplankton is also necessary to generate the differences between these two ecosystems. [Copyright &y& Elsevier]

A three-dimensional biophysical nutrient–phytoplankton–zooplankton model was used to investigate the spatial and temporal dynamics of food resources for young walleye pollock in the western Gulf of Alaska, to further understanding of recruitment processes for pollock. We modeled nitrogen, phytoplankton, a large herbivorous grazer parameterized as Neocalanus spp. (the biomass dominant copepod in the Gulf), and the 13 stages (egg, naupliar and copepodite) of Pseudocalanus spp. (a major constituent of the diet of pollock) so that the appropriate size class of food for each size of larval pollock was represented. Model results identified an area between the Semidi and Shumagin Islands that may not be suitable as a nursery area early in the year due to low prey abundance. Modeled mesoscale eddies, previously hypothesized to be important for larval pollock retention in Shelikof Strait, contained higher prey concentrations than the surrounding waters when they were cyclonic. This work also help to understand the consistency of pollock spawning in time and space in Shelikof Strait, by examining the timing and location of prey availability which, along with transport, narrows the window for optimal spawning. [ABSTRACT FROM AUTHOR]

Polycrystalline CdS films, with thicknesses typically 20–180 nm, have been chemically deposited on glass substrates using an ammonia–cadmium–thiourea reaction solution. Film elemental composition, thickness and microstructure have been examined using proton-induced X-ray emission, Rutherford backscattering and atomic force microscopy. Analysis indicates that the stability of the deposition temperature plays a critical role in CdS film growth and composition. Films deposited with high temperature stability (60±0.5 °C) show a consistent 1:1 Cd:S atomic ratio for all stages of film growth, and have good substrate adhesion. Films deposited with lower temperature stability (60±4 °C) show initial high S concentrations, followed by a rapid increase in Cd concentration, until a final 1.2:1 Cd:S ratio is achieved. A mechanism is proposed to explain this difference in film composition and properties. [Copyright &y& Elsevier]

The text is a report on clinical trials and trial design in the field of Amyotrophic Lateral Sclerosis (ALS) and Frontotemporal Degeneration (FTD). It is authored by a large number of researchers and experts in the field. The report provides a comprehensive overview of ongoing clinical trials, trial design considerations, and potential future directions for research in ALS and FTD. It is a valuable resource for library patrons conducting research on these specific topics. [Extracted from the article]

A hexanucleotide repeat expansion in C9ORF72 is the cause of chromosome 9p21-linked ALS-FTD. TDP-43 triggers mitochondrial DNA release via mPTP to activate cGAS/STING in ALS. TDP-43 regulates the alternative splicing of hnRNP A1 to yield an aggregation-prone variant in amyotrophic lateral sclerosis. [Extracted from the article]

Little is known about the mechanism of transport that enables age-0 sablefish (Anoplopoma fimbria) to reach suitable nursery sites from spawning locations far offshore, or the strength of the connection between individual spawning sites and nursery areas, or how variability in the strength of these connections may impact recruitment success. Using a model for the early life stages of sablefish, we explored the variability in connectivity between spawning and recruitment sites that can arise solely from interannual variability in environmental forcing and its impact on transport. Our major findings are that 1) the model indicates young sablefish settling in nursery areas in the Gulf of Alaska were most likely spawned in the eastern Gulf; 2) sablefish spawned in the western Gulf of Alaska are unlikely to settle anywhere in the Gulf, and are more likely to be advected farther west, perhaps to settle in the Aleutian islands or Bering Sea (to contribute to the Alaska population, they would have to undergo an active return migration as they mature); 3) total connectivity between all spawning sites and nursery areas showed stronger correlation with recruitment estimates than the strength of connections to or from specific regions; and 4) transport to St. John Baptist Bay, a known sablefish nursery area, was not the most probable end point for sablefish spawned throughout our Gulf of Alaska model domain. This suggests that young individuals arrive at this persistent nursery area due to directional swimming behavior, highly localized spawning, or small-scale currents not captured in the hydrographic model. The fact that no single correlate in our analysis had a very strong relationship to sablefish recruitment indicates that recruitment variability arises from complex interactions between the environment and the individual, and a possible disconnect in spatial scales between the Gulf of Alaska sablefish IBM and the broader sablefish stock assessment, which includes both the GOA and the Eastern Bering Sea, as well as possible contributions from Canadian stocks to the south. Our analyses determined that although the timing and extent of this transport shows significant interannual variability, both the location of likely sablefish spawning (source) areas and the comparative strength of connectivity between spawning and nursery sites appear to be relatively consistent year-to-year. [ABSTRACT FROM AUTHOR]