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1. Functional annotation of human long noncoding RNAs via molecular phenotyping (vol 30, pg 1060, 2020)

2. The single-cell eQTLGen consortium

3. Author response: The single-cell eQTLGen consortium

7. Quantification of escape from X chromosome inactivation with single-cell omics data reveals heterogeneity across cell types and tissues.

8. Annotation of nuclear lncRNAs based on chromatin interactions.

9. Single-nucleotide variant calling in single-cell sequencing data with Monopogen.

10. CamoTSS: analysis of alternative transcription start sites for cellular phenotypes and regulatory patterns from 5' scRNA-seq data.

11. Enhancer target prediction: state-of-the-art approaches and future prospects.

12. Defining super-enhancers by highly ranked histone H4 multi-acetylation levels identifies transcription factors associated with glioblastoma stem-like properties.

13. Prediction of the cell-type-specific transcription of non-coding RNAs from genome sequences via machine learning.

14. Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types.

15. Mediators of Capillary-to-Venule Conversion in the Chronic Inflammatory Skin Disease Psoriasis.

16. SCAFE: a software suite for analysis of transcribed cis-regulatory elements in single cells.

17. Single-cell transcriptomics of human gut T cells identifies cytotoxic CD4 + CD8A + T cells related to mouse CD4 cytotoxic T cells.

18. Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs.

19. Recombination of repeat elements generates somatic complexity in human genomes.

20. Critical roles of FGF, RA, and WNT signalling in the development of the human otic placode and subsequent lineages in a dish.

21. Inducing human retinal pigment epithelium-like cells from somatic tissue.

22. RNA Sequencing Reveals Widespread Transcription of Natural Antisense RNAs in Entamoeba Species.

23. Heterogeneity among enhancer RNAs: origins, consequences and perspectives.

24. The choice of negative control antisense oligonucleotides dramatically impacts downstream analysis depending on the cellular background.

25. Systematic functional interrogation of human pseudogenes using CRISPRi.

26. LETR1 is a lymphatic endothelial-specific lncRNA governing cell proliferation and migration through KLF4 and SEMA3C.

27. FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs.

28. Genomic determinants for initiation and length of natural antisense transcripts in Entamoeba histolytica.

29. Analysis of splice variants of the human protein disulfide isomerase (P4HB) gene.

30. Expanded ENCODE delivers invaluable genomic encyclopedia.

31. Functional annotation of human long noncoding RNAs via molecular phenotyping.

32. Recounting the FANTOM CAGE-Associated Transcriptome.

33. Genetic Diversity and Gene Family Expansions in Members of the Genus Entamoeba.

34. C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution.

35. Update of the FANTOM web resource: expansion to provide additional transcriptome atlases.

36. Chromatin accessibility landscape of articular knee cartilage reveals aberrant enhancer regulation in osteoarthritis.

37. The Human Cell Atlas: Technical approaches and challenges.

38. Long Non-Coding RNAs Associated with Metabolic Traits in Human White Adipose Tissue.

39. JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states.

40. Monitoring transcription initiation activities in rat and dog.

41. An integrated expression atlas of miRNAs and their promoters in human and mouse.

42. An atlas of human long non-coding RNAs with accurate 5' ends.

43. Extensive transcriptome analysis correlates the plasticity of Entamoeba histolytica pathogenesis to rapid phenotype changes depending on the environment.

44. Intron retention-dependent gene regulation in Cryptococcus neoformans.

45. Exonuclease-mediated degradation of nascent RNA silences genes linked to severe malaria.

46. Gene expression profiling in Entamoeba histolytica identifies key components in iron uptake and metabolism.

47. Regulation of transcription termination by glucosylated hydroxymethyluracil, base J, in Leishmania major and Trypanosoma brucei.

48. Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation.

49. Comparative ribosome profiling reveals extensive translational complexity in different Trypanosoma brucei life cycle stages.

50. Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum.

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