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Morphology has been a leading taxonomic guiding light to systematists for the last couple of hundred years. However, the genetic and – more recently – genomic revolution have produced numerous demonstrations of erroneous classifications that were based on labile morphological traits. We used thousands of genome-wide markers to shed light on evolutionary dynamics in a confusing and taxonomically obscure group of Asian Cyornis flycatchers. Using genomic data, we corroborated recent findings based on three mitochrondrial and five nuclear genes that the two taxa hainanus and klossi which were previously treated as separate species (Cyornis hainanus and Cyornis rubeculoides klossi, respectively) are genomically homogeneous and form a single species, C. hainanus. We also uncovered a novel case of interbreeding between C. hainanus and a non-sister species, C. glaucicomans, illustrating these flycatchers' ability to hybridise in marginal situations even after substantial times of divergence. Our study illustrates how genome-wide loci can shed light on complicated taxonomic problems, resulting in a better integration of phenotypic and genotypic data.

International audience; We use multilocus molecular data and species distribution modelling to investigate the phylogenetics and the phylogeography of the White‐backed Woodpecker (Dendrocopos leucotos), a bird species widely distributed over the entire Palaearctic. Our phylogenetic results reveal three well‐supported clades within D. leucotos: the Chinese endemic subspecies (tangi, insularis), the northerly distributed subspecies (leucotos, uralensis) and the four poorly genetically differentiated Japanese subspecies (subcirris, stejnegeri, namiyei, owstoni), and the south‐western Palaearctic lilfordi subspecies. According to our results, the Amami Woodpecker, endemic to Amami Oshima Island (Ryukyu archipelago, Japan) sometimes treated as full species Dendrocopos owstoni, does not deserve a species‐level status. Based on the mitochondrial phylogeographic results, the Japanese archipelago was recently colonized only once by D. leucotos from eastern Eurasia. Our results suggest a split between the leucotos and lilfordi lineages that dates back to mid‐Pleistocene (around 0.6 Mya) with likely no gene flow between these two subspecies since then. Our results thus do not support a phylogeographic pattern in which Central Europe and Northern Europe were recolonized from one or several southern glacial refugia where lilfordi populations persisted through several Pleistocene glacial periods. Spatial variation in mitochondrial diversity across leucotos/uralensis populations and niche ecological modelling suggest a possible eastward population expansion from a unique glacial refugium likely located in Central Europe. Molecular species delimitation methods, gene flow analyses and differences in adult and juvenile plumage indicate that the lilfordi subspecies may warrant to be ranked as a valid phylogenetic species. Further studies are nevertheless needed in the Balkans, where leucotos and lilfordi came recently into contact to measure the effectiveness of reproductive barriers and gene flow.

Tobias, Joseph A., Sheard, Catherine, Pigot, Alex L., Devenish, Adam J. M., Yang, Jingyi, Sayol, Ferran, Neate‐Clegg, Montague H. C., Alioravainen, Nico, Weeks, Thomas L., Barber, Robert A., Walkden, Patrick A., MacGregor, Hannah E. A., Jones, Samuel E. I., Vincent, Claire, Phillips, Anna G., Marples, Nicola M., Montaño‐Centellas, Flavia A., Leandro‐Silva, Victor, Claramunt, Santiago, Darski, Bianca, Freeman, Benjamin G., Bregman, Tom P., Cooney, Christopher R., Hughes, Emma C., Capp, Elliot J. R., Varley, Zoë K., Friedman, Nicholas R., Korntheuer, Heiko, Corrales‐Vargas, Andrea, Trisos, Christopher H., Weeks, Brian C., Hanz, Dagmar M., Töpfer, Till, Bravo, Gustavo A., Remeš, Vladimír, Nowak, Larissa, Carneiro, Lincoln S., Moncada R., Amilkar J., Matysioková, Beata, Baldassarre, Daniel T., Martínez‐Salinas, Alejandra, Wolfe, Jared D., Chapman, Philip M., Daly, Benjamin G., Sorensen, Marjorie C., Neu, Alexander, Ford, Michael A., Mayhew, Rebekah J., Fabio Silveira, Luis, Kelly, David J., Annorbah, Nathaniel N. D., Pollock, Henry S., Grabowska‐Zhang, Ada M., McEntee, Jay P., Carlos T. Gonzalez, Juan, Meneses, Camila G., Muñoz, Marcia C., Powell, Luke L., Jamie, Gabriel A., Matthews, Thomas J., Johnson, Oscar, Brito, Guilherme R. R., Zyskowski, Kristof, Crates, Ross, Harvey, Michael G., Jurado Zevallos, Maura, Hosner, Peter A., Bradfer‐Lawrence, Tom, Maley, James M., Stiles, F. Gary, Lima, Hevana S., Provost, Kaiya L., Chibesa, Moses, Mashao, Mmatjie, Howard, Jeffrey T., Mlamba, Edson, Chua, Marcus A. H., Li, Bicheng, Gómez, M. Isabel, García, Natalia C., Päckert, Martin, Fuchs, Jérôme, Ali, Jarome R., Derryberry, Elizabeth P., Carlson, Monica L., Urriza, Rolly C., Brzeski, Kristin E., Prawiradilaga, Dewi M., Rayner, Matt J., Miller, Eliot T., Bowie, Rauri C. K., Lafontaine, René‐Marie, Scofield, R. Paul, Lou, Yingqiang, Somarathna, Lankani, Lepage, Denis, Illif, Marshall, Neuschulz, Eike Lena, Templin, Mathias, Dehling, D. Matthias, Cooper, Jacob C., Pauwels, Olivier S. G., Analuddin, Kangkuso, Fjeldså, Jon, Seddon, Nathalie, Sweet, Paul R., DeClerck, Fabrice A. J., Naka, Luciano N., Brawn, Jeffrey D., Aleixo, Alexandre, Böhning‐Gaese, Katrin, Rahbek, Carsten, Fritz, Susanne A., Thomas, Gavin H., Schleuning, Matthias (2022): AVONET: morphological, ecological and geographical data for all birds. Ecology Letters 25 (3): 581-597, DOI: 10.1111/ele.13898, URL: http://dx.doi.org/10.1111/ele.13898

Movalli, Paola et al., The chemical industry is the leading sector in the EU in terms of added value. However, contaminants pose a major threat and significant costs to the environment and human health. While EU legislation and international conventions aim to reduce this threat, regulators struggle to assess and manage chemical risks, given the vast number of substances involved and the lack of data on exposure and hazards. The European Green Deal sets a ‘zero pollution ambition for a toxic free environment’ by 2050 and the EU Chemicals Strategy calls for increased monitoring of chemicals in the environment. Monitoring of contaminants in biota can, inter alia: provide regulators with early warning of bioaccumulation problems with chemicals of emerging concern; trigger risk assessment of persistent, bioaccumulative and toxic substances; enable risk assessment of chemical mixtures in biota; enable risk assessment of mixtures; and enable assessment of the effectiveness of risk management measures and of chemicals regulations overall. A number of these purposes are to be addressed under the recently launched European Partnership for Risk Assessment of Chemicals (PARC). Apex predators are of particular value to biomonitoring. Securing sufficient data at European scale implies large-scale, long-term monitoring and a steady supply of large numbers of fresh apex predator tissue samples from across Europe. Natural science collections are very well-placed to supply these. Pan-European monitoring requires effective coordination among field organisations, collections and analytical laboratories for the flow of required specimens, processing and storage of specimens and tissue samples, contaminant analyses delivering pan-European data sets, and provision of specimen and population contextual data. Collections are well-placed to coordinate this. The COST Action European Raptor Biomonitoring Facility provides a well-developed model showing how this can work, integrating a European Raptor Biomonitoring Scheme, Specimen Bank and Sampling Programme. Simultaneously, the EU-funded LIFE APEX has demonstrated a range of regulatory applications using cutting-edge analytical techniques. PARC plans to make best use of such sampling and biomonitoring programmes. Collections are poised to play a critical role in supporting PARC objectives and thereby contribute to delivery of the EU’s zero-pollution ambition., This paper was carried out in collaboration between ‘European Raptor Biomonitoring Facility’ (COST Action 16224), and the project ‘LIFE APEX—Systematic use of contaminant data from apex predators and their prey in chemicals management’ (LIFE17 ENV/SK/000355). European Raptor Biomonitoring Facility is supported by COST (European Cooperation in Science and Technology) and funded by the Horizon 2020 Framework Programme of the European Union. LIFE APEX is funded by the LIFE Programme, the EU’s funding instrument for the environment and climate action.

Avian pathogens such as bornaviruses, circoviruses and polyomaviruses are widely distributed in captive collections of psittacine birds worldwide and can cause fatal diseases. In contrast, only lit...

Chlorospingus flavopectus, a widely distributed member of the New World sparrows and finches (Passerellidae), is among the most variable and complex Neotropical bird species. With up to 28 subspecies that inhabit montane forest from Mexico south to Argentina, it presents a recurring leapfrog pattern, with many genetically differentiated lineages, but even more morphologically distinguishable taxa. Chlorospingus flavopectus phaeocephalus is distributed along the eastern Andean slope (from southern Colombia to northern Peru) and in localized patches along the central and southwestern slopes of the Ecuadorian Andes, in the forest remnants of Chimborazo, El Oro, and adjacent Loja provinces. This allopatric distribution was based on plumage similarities, but no genetic or vocal analysis has tested if these populations share a common ancestry. Here, we compared data for populations of C. f. phaeocephalus, C. semifuscus semifuscus from northwest Ecuador, and C. s. livingstoni from west Colombia, and analyzed them in the context of other Chlorospingus. Our phylogenetic analyses revealed that the putative west Ecuadorian populations of C. f. phaeocephalus are nested within C. semifuscus. They also present diagnostic characters when compared to other populations of C. semifuscus and C. f. phaeocephalus. Based on these results, we recognize the population from El Oro and adjacent Loja Provinces as a new subspecies of C. semifuscus, and the population from Chimborazo Province as a morphological variation of C. s. semifuscus.

Abstract Multiple molecular phylogenetic studies have demonstrated that two Neotropical raptors, tiny hawk Accipiter superciliosus and its sister species semicollared hawk A. collaris, are not closely related to core Accipiter, and that A. superciliosus, at least, possesses osteological characters not replicated in the remainder of the genus. Based on these data, there is a need to recognise their distinctiveness at generic level. However, as recently noted in two global bird checklists, no name is available to accommodate them, so we provide a new nomen here. Furthermore, two Asian accipitrids, crested goshawk A. trivirgatus and its presumed closest relative Sulawesi goshawk A. griseiceps, are also phylogenetically distinctive; in this case the genus-group name Lophospiza is applicable. We also designate type species for two genus-group names (Hieraspiza and Eusparvius) currently in the synonymy of Accipiter, and, as an aid to future workers, we provide a synonymy of the genus Accipiter and a list of species currently included in Accipiter for which published molecular phylogenetic data are apparently lacking.

SummaryThree subspecies of Island Thrush Turdus poliocephalus were historically found in New Caledonia. All these subspecies were considered extinct until 1978, when T. p. xanthopus was rediscovered on two small islands, Néba (∼ 3.5 km2) and Yandé (∼ 13 km2). On Néba, we estimated the population at 44–58 individuals. This Island Thrush population is dependent on the coastal forest, the richest habitat for invertebrates. However, the coastal forest habitat has been degraded in quality and extent. The Island Thrush forages in the litter by removing leaves with its bill. Fruits (diameter < 10 mm), picked from trees and swallowed whole, are also a significant component of its diet. Néba and Yandé are currently free of two nest predator species, the black rat Rattus rattus and the New Caledonian Crow Corvus moneduloides. On Néba, a low breeding success rate of 15.4% was found. To ensure conservation of these relict thrush populations, two actions at least should be implemented: setting up a biosecurity programme to keep islands free of black rats and increasing the area of coastal forest. The latter could be done by cutting down coconut trees in abandoned groves and planting tree species used by the Island Thrush to provide shade, fruits, good leaf litter, and nest support.

Due to their limited ranges and inherent isolation, island species have long been recognized as crucial systems for tackling a range of evolutionary questions, including in the early study of speciation.1,2 Such species have been less studied in the understanding of the evolutionary forces driving DNA sequence evolution. Island species usually have lower census population sizes (N) than continental species and, supposedly, lower effective population sizes (Ne). Given that both the rates of change caused by genetic drift and by selection are dependent upon Ne, island species are theoretically expected to exhibit (1) lower genetic diversity, (2) less effective natural selection against slightly deleterious mutations,3,4 and (3) a lower rate of adaptive evolution.5, 6, 7, 8 Here, we have used a large set of newly sequenced and published whole-genome sequences of Passerida species (14 insular and 11 continental) to test these predictions. We confirm that island species exhibit lower census size and Ne, supporting the hypothesis that the smaller area available on islands constrains the upper bound of Ne. In the insular species, we find lower nucleotide diversity in coding regions, higher ratios of non-synonymous to synonymous polymorphisms, and lower adaptive substitution rates. Our results provide robust evidence that the lower Ne experienced by island species has affected both the ability of natural selection to efficiently remove weakly deleterious mutations and also the adaptive potential of island species, therefore providing considerable empirical support for the nearly neutral theory. We discuss the implications for both evolutionary and conservation biology., This research was funded by the French ANR (BirdIslandGenomic project, ANR-14-CE02-0002). J.C.I. was funded by the Spanish Ministry of Science, Innovation and Universities (Ref.: PGC2018-097575-B-I00) and by a GRUPIN research grant from the Regional Government of Asturias (Ref.: IDI/2018/000151). B.M. and M.R. were partly funded by the Spanish Ministry of Science and Innovation (grant PGC2018-098897-B-I00), and M.R. was supported by a doctoral fellowship from the Spanish Ministry of Education, Culture, and Sport (FPU16/05724).

Few studies have quantified the extent of genetic differentiation within widely distributed polytypic African bird species with disjunct ranges. Current knowledge indicates that high levels of genetic differentiation are found for such lineages but generalization of the pattern requires further comparisons with other co-distributed taxa. We assessed the extent of phylogeographical structure across the range of the Olive Woodpecker Dendropicos griseocephalus using mitochondrial and nuclear intron data. The Olive Woodpecker occupies the forests of Central (Dendropicos griseocephalus ruwenzori) and Eastern (Dendropicos g. kilimensis) Africa, with a disjunct morphological lineage (Dendropicos g. griseocephalus) occurring in southern Africa. Each of the subspecies lineages can be diagnosed using morphology. Phylogenetic analyses of our sequence data recovered three monophyletic lineages with kilimensis sister to ruwenzori, and griseocephalus as sister to the clade uniting these two taxa. Molecular species delimitation methods and estimates of gene flow under the isolation-with-migration model suggest that the clade uniting the central and eastern subspecies may be recognized as distinct at the species level from the nominate subspecies, which is restricted to southern Africa. We conclude that D. griseocephalus (Boddaert, 1783) and D. ruwenzori (Sharpe, 1902) (including subspecies kilimensis) should be considered full species. The biogeographical pattern we uncover for the Olive Woodpecker differs from that of other co-distributed widespread species both in terms of the order of sequence divergence of lineages occupying different areas of endemism in Africa, and in the timing of divergence, being younger (0.5–0.7 mya BP) than that recovered for the co-distributed Square-tailed Drongo Dicrurus ludwigii (0.9–1.6 mya BP).

The White-vented Storm-petrel Oceanites gracilis is one of the world's least known seabirds and is listed as Data Deficient by the IUCN. To date, only one breeding colony, with less than ten pairs, is known from the Chungungo Islet in Chile. To understand the breeding habitat and the threats faced by the species, it is crucial to search for other colonies. We carried out field surveys of this species in the Atacama Desert between 2013 and 2020, searching for nests along c. 870 km of coastline, from sea level to 1700 m.a.s.l. We also revisited the breeding colony at the Chungungo Islet. To detect nests, we used endoscopic cameras and scent-trained dogs. We found two new breeding colonies in Pampa Hermosa and Pampa del Indio Muerto in the Atacama Desert, and additionally, we found two non-active breeding sites in Tocopilla and Sierra Miranda. Colonies were on different substrates, including crevices in saltpetre formations, gypsum and rocks (only Chungungo Islet). The threats identified for each breeding site include light pollution and habitat destruction by mining and energy projects. Further surveys are needed to estimate the population size and to assess the conservation status of this species.

Whole-genome sequencing projects are increasingly populating the tree of life and characterizing biodiversity1–4. Sparse taxon sampling has previously been proposed to confound phylogenetic inference5, and captures only a fraction of the genomic diversity. Here we report a substantial step towards the dense representation of avian phylogenetic and molecular diversity, by analysing 363 genomes from 92.4% of bird families—including 267 newly sequenced genomes produced for phase II of the Bird 10,000 Genomes (B10K) Project. We use this comparative genome dataset in combination with a pipeline that leverages a reference-free whole-genome alignment to identify orthologous regions in greater numbers than has previously been possible and to recognize genomic novelties in particular bird lineages. The densely sampled alignment provides a single-base-pair map of selection, has more than doubled the fraction of bases that are confidently predicted to be under conservation and reveals extensive patterns of weak selection in predominantly non-coding DNA. Our results demonstrate that increasing the diversity of genomes used in comparative studies can reveal more shared and lineage-specific variation, and improve the investigation of genomic characteristics. We anticipate that this genomic resource will offer new perspectives on evolutionary processes in cross-species comparative analyses and assist in efforts to conserve species., A dataset of the genomes of 363 species from the Bird 10,000 Genomes Project shows increased power to detect shared and lineage-specific variation, demonstrating the importance of phylogenetically diverse taxon sampling in whole-genome sequencing.

International audience; The Resplendent Quetzal Pharomachrus mocinno is a rare Neotropical bird included in the IUCN red list as Near Threatened. Fragmentation of its habitat, the cloud forest, is considered as the principal threat. Two subspecies are currently recognised but genetic and morphometric studies suggested they could be considered as full species. We assessed whether male vocalisation would support a species delimitation hypothesis. We recorded in the field and downloaded from sound archives vocalisation of 57 individuals from 30 different localities distributed in 11 countries. We estimated the acoustic differences of all the Pharomachrus taxa with multivariate analyses and machine learning techniques. Our results show vocal differences between P. m. mocinno and P. m. costaricensis that could have a molecular basis, potentially due to genetic drift developed during the more than three million years of separation of P. m. mocinno (from Mexico to Nicaragua) and P. m. costaricensis (Costa Rica and Panama). We therefore suggest that P. mocinno could potentially be divided into two species. A possible separation of these taxa into two species could have important consequences for the conservation status of the Resplendent Quetzals, and redirect conservation efforts for these taxa.

Avian pathogens such as bornaviruses, circoviruses and polyomaviruses are widely distributed in captive collections of psittacine birds worldwide and can cause fatal diseases. In contrast, only little is known about their presence in free-ranging psittacines and their impact on these populations. Rose-ringed parakeets (

Molecular phylogenetic studies of woodpeckers (Picidae) have generally focused on relationships within specific clades or have sampled sparsely across the family. We compared DNA sequences of six loci from 203 of the 217 recognized species of woodpeckers to construct a comprehensive tree of intrafamilial relationships. We recovered many known, but also numerous unknown, relationships among clades and species. We found, for example, that the three picine tribes are related as follows (Picini, (Campephilini, Melanerpini)) and that the genus Dinopium is paraphyletic. We used the tree to analyze rates of diversification and biogeographic patterns within the family. Diversification rate increased on two occasions during woodpecker history. We also tested diversification rates between temperate and tropical species but found no significant difference. Biogeographic analysis supported an Old World origin of the family and identified at least six independent cases of New World-Old World sister relationships. In light of the tree, we discuss how convergence, mimicry, and potential cases of hybridization have complicated woodpecker taxonomy.

In Supplementary Table 1 of this Article, 23 samples (B10K-DU-029-32, B10K-DU-029-33, B10K-DU-029-36 to B10K-DU-029-44, B10K-DU- 029-46, B10K-DU-029-47, B10K-DU-029-49 to B10K-DU-029-53, B10K-DU- 029-75 to B10K-DU-029-77, B10K-DU-029-80, and B10K-DU-030-03; styled in boldface in the revised table) were assigned to the incorrect institution. Supplementary Table 1 has been amended to reflect the correct source institution for these samples, and associated data (tissue, museum ID/source specimen ID, site, state/province, latitude, longitude, date collected and sex) have been updated accordingly. The original table is provided as Supplementary Information to this Amendment, and the original Article has been corrected online.

Diversification of avifaunas associated with savannah and steppes appears to correlate with open habitats becoming available, starting in the Miocene. Few comparative analyses exist for families fo ...

Amongst 15 bird species, representative of 7 orders, recurrent breakages evocating the presence of fragile sites were detected in the chromosomes of the 5 species belonging to Passeriformes. These breaks appeared when 5-bromodeoxyuridine (BrdU) was added to the cell culture medium at a dose inefficient for inducing chromosome structure alterations in other birds and mammals. They involved, similarly in male and female, 3 loci on the Z chromosome of 3 Turdus species (Turdidae). Labeling by BrdU antibody confirmed the correlation between BrdU incorporation into DNA and breakage, especially around and in the sites of breakage. Thus, 3 BrdU-sensitive fragile sites were present in the Z chromosomes of these birds. Three fragile sites were also detected at different locations in the Z chromosomes of the European robin (Erithacus rubecula, Muscicapidae), suggesting that a structural rearrangement occurred during the evolution of Turdidae and Muscicapidae. Chromosome banding confirmed this interpretation. Finally, in the more distantly related species Parus major (Paridae), the almost acrocentric Z chromosome displayed a single BrdU-sensitive fragile site in its short arm, and the W appeared to be pulverized by BrdU incorporation. Although it cannot be excluded that the BrdU-sensitive fragile sites may be involved in rearrangements, their conservation in many species, and possibly all Passeriformes, provides evidence that they do not constitute a pejorative character during evolution.

International audience; The Eurasian treecreeper (Certhia familiaris) comprises two mitochondrial lineages that diverged during the mid-Pleistocene. One palaeoendemic lineage has an allopatric range currently restricted to the island of Corsica and the Caucasus region, whereas the second one has a very large Eurasian range. Here, we used microsatellites (N = 6) and mitochondrial DNA (COI) to assess the genetic structure of insular and mainland populations from Corsica, mainland France and Central Italy (N = 258) and the level of mitochondrial and nuclear gene flow among these populations. Concordant with the mitochondrial DNA signal, the results for microsatellites clearly demonstrate that the Corsican population (Certhia familiaris corsa) is strongly divergent from nearby mainland populations (Certhia familiaris macrodactyla). Microsatellite data also support significant divergence and low gene flow between the Central Italian and mainland French populations. Our results suggest low nuclear gene flow from the mainland into Corsica and no mitochondrial gene flow. Sporadic gene flow from the nearby mainland might explain the presence of continental nuclear alleles in the genome of 5% of sampled insular birds. Our study confirms the existence of an endemic Corsican treecreeper lineage with important conservation value. Our results also imply that Eurasian treecreepers from Central Italy constitute a distinct management unit.

International audience; Secondary contact zones are natural systems which can be efficiently used to measure genetic differentiation and gene flow and thus provide a good opportunity to assess the level of reproductive isolation between divergent evolutionary lineages. In this study, we used ten Z-linked and nine autosomal loci from seven chromosomes and twenty males to evaluate gene flow across a secondary contact zone between two mitochondrial lineages of the Eurasian Green Woodpecker (Picus viridis), that diverged around 1 million years ago. One lineage (Picus viridissharpei) is distributed throughout the Iberian Peninsula whereas the other one (Picus viridisviridis) is widespread across the Western Palearctic. These two lineages form a secondary contact zone in southern France. Formerly treated as two subspecies of Picus viridis, several authors have recently proposed assigning a specific rank to P. viridis sharpei and P. viridis viridis. Our results indicate no introgression of nuclear loci in allopatric populations located on both sides of the contact zone, which thus acts as an efficient barrier to gene flow. All males sampled within the contact zone and one male sampled near its eastern border were slightly admixed revealing that reproductive isolation between P. viridissharpei and P viridis viridis has not been completely achieved. In accordance with the geographical range of each lineage, the two admixed males sampled near the western border of the contact zone harboured a large proportion of P. viridissharpei alleles whereas admixed males sampled eastwardly near the Rhone Valley had a high proportion of P. viridis viridis alleles. Overall our results further support considering P. viridissharpei and P. viridisviridis as two biological species.

In diesem Beitrag berichtet Jerome Fuchs, der Kommandeur der GSG 9, uber die Herausforderungen der Fuhrung der Spezialeinheit der Bundespolizei zur Bekampfung von Terrorismus und schwerster Gewaltkriminalitat, die auch unter Gefahr fur das eigene Leben einsatzbereit sein muss. Gute Fuhrung zeichnet sich in dieser Spezialeinheit u. a. durch Fuhrung von vorn aus, durch offene Kommunikation, gegenseitige Akzeptanz und partnerschaftlichen Umgang. Dabei muss eine Reihe von Voraussetzungen erfullt sein wie Teamfahigkeit, gegenseitiges Vertrauen, Intelligenz, physische und psychische Eignung sowie die intrinsische Motivation, Besonderes leisten zu wollen.

The present study examines the colonization history and phylogeography of the brush-warblers (Nesillas), a genus of passerines endemic to islands of the western Indian Ocean (Madagascar, Comoros, and Aldabra Atoll). The phylogeny of all recognized Nesillas taxa was reconstructed employing Bayesian phylogenetic methods and divergence times were estimated using a range of substitution rates and clock assumptions. Spatiotemporal patterns of population expansion were inferred and niches of different lineages were compared using ecological niche modelling. Our results indicate that taxa endemic to the Comoros are paraphyletic and that the two endemic species on Madagascar (Nesillas typica and Nesillas lantzii) are not sister taxa. The brush-warblers started to diversify approximately 1.6 Mya, commencing with the separation of the clade formed by two species endemic to the Comoros (Nesillas brevicaudata and Nesillas mariae) from the rest of the genus. The lineages leading to the two Malagasy species diverged approximately 0.9 Mya; each with significantly different modern ecological niches and the subject of separate demographic processes. Patterns of diversification and endemism in Nesillas were shaped by multiple long distance dispersal events and inter-island colonization, a recurring pattern for different lineages on western Indian Ocean islands. The diversification dynamics observed for Nesillas are also consistent with the taxon cycle hypothesis.

We investigated the evolutionary history of the spotted flycatcher Muscicapa striata, a long distance migratory passerine having a widespread range, using mitochondrial markers and nuclear introns. Our mitochondrial results reveal the existence of one insular lineage restricted to the western Mediterranean islands (Balearics, Corsica, Sardinia) and possibly to the Tyrrhenian coast of Italy that diverged from the mainland lineages around 1 Mya. Mitochondrial genetic distance between insular and mainland lineages is around 3.5%. Limited levels of shared nuclear alleles among insular and mainland populations further support the genetic distinctiveness of insular spotted flycatchers with respect to their mainland counterparts. Moreover, lack of mitochondrial haplotypes sharing between Balearic birds (M. s. balearica) and Corso-Sardinian birds (M. s. tyrrhenica) suggest the absence of recent matrilineal gene flow between these two insular subspecies. Accordingly, we suggest that insular spotted flycatchers could be treated as one polytypic species (Muscicapa tyrrhenica) that differs from M. striata in morphology, migration, mitochondrial and nuclear DNA and comprises two subspecies (the nominate and M. t. balearica) that diverged recently phenotypically and in mitochondrial DNA and but still share the same nuclear alleles. This study provides an interesting case-study illustrating the crucial role of western Mediterranean islands in the evolution of a passerine showing high dispersal capabilities. Our genetic results highlight the role of glacial refugia of these islands that allowed initial allopatric divergence of insular populations. We hypothesize that differences in migratory and breeding phenology may prevent any current gene flow between insular and mainland populations of the spotted flycatcher that temporarily share the same insular habitats during the spring migration.

We describe a new species of drongo in the Square-tailed Drongo (Dicrurus ludwigii) complex using a combination of biometric and genetic data. The new species differs from previously described taxa in the Square-tailed Drongo complex by possessing a significantly heavier bill and via substantial genetic divergence (6.7%) from its sister-species D. sharpei. The new species is distributed across the gallery forests of coastal Guinea, extending to the Niger and Benue Rivers of Nigeria. We suspect that this taxon was overlooked by previous avian systematists because they either lacked comparative material from western Africa or because the key diagnostic morphological character (bill characteristics) was not measured. We provide an updated taxonomy of the Square-tailed Drongo species complex.

International audience; Background: The Cambodian Tailorbird (Orthotomus chaktomuk) was one of the most recent major ornithological discoveries in South-east Asia as it originated from lowland seasonally flooded scrub within the densely inhabited floodplain around the Tonle Sap, Mekong and Bassac rivers (Cambodia). The Cambodian Tailorbird is sister to the Dark-necked Tailorbird (O. atrogularis) with very limited genetics and biometric differentiation. Between 2004 and 2012, evidences of a new population of Ashy Tailorbird (O. ruficeps) in SE Cambodia/Vietnam accumulated but no museum specimens were ever reported. The Ashy Tailorbird currently consists of eight subspecies among which the closest geographical populations, O. r. cineraceus (SE Burma to Malay Peninsula, Sumatra, Bangka and Belitung) and O. r. borneoensis (Borneo), are allopatric. Subspecific identification of the Cambodian Ashy Tailorbirds individuals was not possible because of the limited differences in plumage among subspecies.Methods: We inspected the Orthotomus ruficeps specimens housed at the Museum National d’Histoire Naturelle (Paris) and discovered five specimens of O. ruficeps collected by Louis Rodolphe Germain in ‘Cochinchina’ (corresponding to southern Vietnam) during the nineteenth century. We sequenced one mitochondrial locus and gathered biometric data from these specimens and compared them with other Orthotomus lineages.Results: The Ashy Tailord population from SE Cambodia and Vietnam is distinct from the two geographically close subspecies O. r. borneoensis (1.7%) and O. r. cineraceus (1.3%). O. chaktomuk is nested within O. atrogularis in the mitochondrial gene tree. The SE Cambodia/Vietnam population of O. ruficeps is distinct from the two other subspecies in bill shape.Conclusion: Our study described the biometric and molecular distinctiveness of a recently re-discovered population of Ashy Tailord in SE Cambodia and Vietnam and suggests that this population constitutes an independent evolutionary lineage that we describe here as a new subspecies. The newly described Cambodian Tailorbird is nested within the Dark-necked Tailorbird and the genetic divergence is much lower than initially described (0.4‒0.7% vs 1.1‒1.4%).

An ideal taxonomy for organisms incorporates comprehensive knowledge of existing species diversity and their phylogenetic relationships. This knowledge is used in developing consistent criteria for recognizing and naming species as well as monophyletic groups (clades) above the species level, including genera, families, and orders. This provides well-justified, consensus names for taxa that can be used globally in studying and managing the health of species and their populations. Having the taxonomic hierarchy of names reflects evolutionary history and advances our understanding of the origins and causes of change over time in biological diversity.

We report here the successful assembly of the complete mitochondrial genomes of the northern spotted owl (Strix occidentalis caurina) and the barred owl (S. varia). We utilized sequence data from two sequencing methodologies, Illumina paired-end sequence data with insert lengths ranging from approximately 250 nucleotides (nt) to 9,600 nt and read lengths from 100–375 nt and Sanger-derived sequences. We employed multiple assemblers and alignment methods to generate the final assemblies. The circular genomes ofS. o. caurinaandS. variaare comprised of 19,948 nt and 18,975 nt, respectively. Both code for two rRNAs, twenty-two tRNAs, and thirteen polypeptides. They both have duplicated control region sequences with complex repeat structures. We were not able to assemble the control regions solely using Illumina paired-end sequence data. By fully spanning the control regions, Sanger-derived sequences enabled accurate and complete assembly of these mitochondrial genomes. These are the first complete mitochondrial genome sequences of owls (Aves: Strigiformes) possessing duplicated control regions. We searched the nuclear genome ofS. o. caurinafor copies of mitochondrial genes and found at least nine separate stretches of nuclear copies of gene sequences originating in the mitochondrial genome (Numts). TheNumtsranged from 226–19,522 nt in length and included copies of all mitochondrial genes excepttRNAPro,ND6, andtRNAGlu.Strix occidentalis caurinaandS. variaexhibited an average of 10.74% (8.68% uncorrectedp-distance) divergence across the non-tRNA mitochondrial genes.

The pied woodpecker assemblage historically included the widespread genera Picoides and Dendrocopos. The assignment of species to either of these two genera has for long puzzled systematists due to their overall plumage similarity. Recent molecular studies not only suggested that both of these genera are not monophyletic, but also that four other genera, the African Dendropicos the South American Veniliornis and two Asian monospecific genera (Hypopicus and Sapheopipo) are nested within the Dendrocopos–Picoides clade. Yet, our current understanding of the phylogeny and taxonomy of this group is still very partial because several distinctive Old World species that have been assigned to different genera throughout their taxonomic history have not been sampled yet. Here, using DNA sequence data gathered from four loci, we reconstructed a species level phylogeny of the Indo-Malayan and Palearctic Pied Woodpeckers to understand the phylogenetic relationships and biogeographic history of the Eurasian species with respect to African and New World lineages. Our phylogenetic analyses revealed nine strongly supported clades within the Dendropicini. Noticeably, two species that had disputed affinities at the genus level clustered in clades with species from the same biogeographical region: the Brown-backed Woodpecker (D. obsoletus) is nested in Dendropicos and the Arabian Woodpecker (D. dorae) is related to two Eurasian species, the Brown-fronted (D. auriceps) and Middle-spotted woodpeckers (D. medius). The nine clades have a strong biogeographic component and very few dispersal event among bioregions occurred. For example, the African species formed a clade, suggesting that only one dispersal event is needed to explain the presence of Dendropicini in Africa. Based on our phylogenetic results, we propose a new classification of the Dendropicini that recognizes nine genera.

In this study we investigated the phylogenetics of the Eurasian treecreeper (Certhia familiaris), a forest passerine with a wide Palaearctic range including Corsica, using three mitochondrial genes and three nuclear introns, and its phylogeographic history using the COI gene. Our phylogenetic results, including eight of the ten sub-species currently recognized, support the monophyly of C. familiaris with respect to its Indo-Asian sister species C. hodgsoni. C. familiaris comprises two lineages that diverged during the mid-Pleistocene (c. 1 Myr): one palaeoendemic lineage has an allopatric range nowadays restricted to the Corsica island and the Caucasus region whereas the second one, more recent and widespread, is distributed over most of Eurasia and in northern China. The most likely scenario that may explain such a pattern is a double colonization of the western Palaearctic from the eastern range of the species. During the middle Pleistocene period, a first lineage expanded its range up into Europe but did not persist through glacial cycles except in Corsica and the Caucasus region. Later, during the upper Pleistocene, a second lineage began to diversify around 0.09 Myr, spreading towards the western Palaearctic from a unique refuge likely located in the eastern Palaearctic [correction added on 6 March 2015 after first online publication: 0.9 Myr amended to 0.09 Myr]. Apart from C. f. corsa, our results do not suggest any distinct evolutionary history for other sub-species previously described on morphological grounds in Europe. Our study highlights the important conservation value of the Corsican treecreeper and emphasizes the major role of mature pine forests in the evolution of endemic bird taxa in Corsica. © 2015 The Linnean Society of London, Biological Journal of the Linnean Society, 2015, 115, 134–153.

Although recent molecular studies have clarified the phylogeny of mongooses, the systematics of the Southeast Asian species was incomplete as the collared mongoose Urva semitorquata and some debatable taxa (Hose's mongoose, Palawan mongoose) were missing in the analyses. We sequenced three mitochondrial (cytochrome b, ND2, control region) and one nuclear (beta-fibrinogen intron 7) fragments of the Southeast Asian mongooses to clarify the systematic position of the different species and populations occurring in this region. Our results showed that the collared mongoose is closely related to the crab-eating mongoose Urva urva, these two species forming a sister-group to the short-tailed mongoose Urva brachyura. Despite Sumatran collared mongooses having a peculiar orange phenotype, we showed that they exhibited very little genetic divergence to individuals from Borneo. In contrast, the populations of the short-tailed mongoose from Borneo were strongly divergent to those from Peninsular Malaysia and Sumatra, and these might represent separate species. Within the crab-eating mongoose, we observed little geographical genetic structure. Our study suggests that Hose's mongoose is not a valid species. The Palawan mongooses did not cluster with the other populations of the short-tailed mongoose; they were closer to the collared mongoose and should be included in this species. © 2014 The Linnean Society of London

We re-examine evidence from the voyage of the corvette La Coquille in respect of the Pomarea monarch flycatchers from Tahiti and Maupiti, and conclude that Pomarea maupitiensisGarnot, 1829, should be recognised as a distinct but extinct species for which we designate a lectotype, necessarily represented by the image in a colour plate.

The ever increasing number of analysed loci in phylogenetics has not only allowed resolution of some parts of the Tree of Life but has also highlighted parts of the tree where incongruent signals among loci were detected. Previous molecular studies suggested conflicting relationships for the New World genus Campephilus, being either associated to the Megapicini or Dendropocini. Yet, the limited number of analysed loci and the use of the concatenation approach to reconstruct the phylogeny prevented the disentanglement of lineage sorting and introgression as causal explanation of this topological conflict. We sequenced four mitochondrial, nine autosomal and three Z-linked loci and used a method that incorporates population level processes into the phylogenetic framework to understand which process (lineage sorting of genetic polymorphism or hybridization/introgression) best explains this conflict. Our analyses revealed that the autosomal FGB intron-7 and to a lesser extent the Z-linked loci have a different phylogenetic history from the mitochondrial loci and some other nuclear loci we analysed. We suggest that this conflicting pattern is the result of introgression consecutive to a hybridization event at the time when members of the Campephilus and melanerpine (Melanerpes and Sphyrapicus) lineages colonized the New World. The case of Campephilus highlights that the mitochondrial genome does not always carry the 'wrong' phylogenetic signal after a past hybridization event. Indeed, we here emphasise that the signature of such event can also be detected in the nuclear genome. With the ongoing increase in the number of loci analysed in phylogenetic studies, it is very likely that further cases will be discovered. Our current results indicate that (1) the genus Campephilus is related to the Asian genera Blythipicus, Chrysocolaptes and Reinwardtipicus, in accordance with morphological data and (2) that the nuclear genome of Campephilus is likely the mixture of two unrelated lineages. Yet, further work with a denser sampling of loci is necessary to evaluate the extant of the Sphyrapicus/Melanerpes lineage nuclear genome that introgressed into the Campephilus genome.

We investigated phylogenetic relationships among Otus scops owls from Socotra Island, the Arabian Peninsula and East Africa using molecular, vocalization and biometric data. The Socotra Scops Owl Otus senegalensis socotranus, currently treated as a subspecies of the African Scops Owl Otus senegalensis, is more closely related to the Oriental Scops Owl Otus sunia and to the endemic Seychelles Scops Owl Otus insularis. Considerable mitochondrial genetic distance and significant morphological differentiation from its two closest relatives, as well as its distinctive vocalizations compared with O. insularis, strongly support recognition of Socotra Scops Owl as a full species. Unexpectedly, two taxa from the Arabian Peninsula, Pallid Scops Owl Otus brucei and African Scops Owl Otus senegalensis pamelae, represent very distinct lineages; O. brucei is basal to a clade that includes taxa found in the Indo-Malayan region and on Indian Ocean islands. In contrast, O. s. pamelae occupies a well-supported basal position within a clade of continental Afro-Palaearctic taxa. The uncorrected-p genetic distance between O. s. pamelae and its closest relatives (other populations of senegalensis from mainland Africa) is c. 4%. As O. s. pamelae is also well differentiated phylogenetically, morphologically and vocally from O. s. senegalensis, we recommend its elevation to species status, as Otus pamelae. Among mainland African O. senegalensis subspecies, Ethiopian populations appear to represent the most divergent lineage, whereas other lineages from Somalia, Kenya and South Africa are poorly differentiated. The large genetic distance between the Ethiopian haplotype and other African haplotypes (3.2%) suggests that the Ethiopian Otus may represent a cryptic taxon, and we recommend that more individuals be sampled to assess the taxonomic status of this population.

We conduct a phylogeographic study of the Crested Drongo (Dicrurus forficatus forficatus), a broadly distributed bird species on Madagascar. We first determined the demographic and spatial pattern inferred from mitochondrial and nuclear data, and then compared these results with predictions from a present to 0.120-Myr-old reconstruction of the spatial dynamics of the range of D.f.forficatus on Madagascar, enabling putative areas of stability (lineage persistence) to be detected. Weak genetic structure along an eastwest pattern and comparatively low genetic diversity were recovered, with strong evidence of population expansion found at all ten loci sampled. The palaeoclimatic distribution models over the past 0.120Myr suggest the presence of extensive areas of suitable climate in the east and west for the species since its colonization of Madagascar, a result in strong concordance with the spatial and genetic signal derived from our multilocus data set.