438 results on '"J. Trevelyan"'
Search Results
2. Daily rhythm in cortical chloride homeostasis underpins functional changes in visual cortex excitability
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Enrico Pracucci, Robert T. Graham, Laura Alberio, Gabriele Nardi, Olga Cozzolino, Vinoshene Pillai, Giacomo Pasquini, Luciano Saieva, Darren Walsh, Silvia Landi, Jinwei Zhang, Andrew J. Trevelyan, and Gian-Michele Ratto
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Science - Abstract
Abstract Cortical activity patterns are strongly modulated by fast synaptic inhibition mediated through ionotropic, chloride-conducting receptors. Consequently, chloride homeostasis is ideally placed to regulate activity. We therefore investigated the stability of baseline [Cl-]i in adult mouse neocortex, using in vivo two-photon imaging. We found a two-fold increase in baseline [Cl-]i in layer 2/3 pyramidal neurons, from day to night, with marked effects upon both physiological cortical processing and seizure susceptibility. Importantly, the night-time activity can be converted to the day-time pattern by local inhibition of NKCC1, while inhibition of KCC2 converts day-time [Cl-]i towards night-time levels. Changes in the surface expression and phosphorylation of the cation-chloride cotransporters, NKCC1 and KCC2, matched these pharmacological effects. When we extended the dark period by 4 h, mice remained active, but [Cl-]i was modulated as for animals in normal light cycles. Our data thus demonstrate a daily [Cl-]i modulation with complex effects on cortical excitability.
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- 2023
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3. AAV8 vector induced gliosis following neuronal transgene expression
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Faye McLeod, Elaine McDermott, Shermin Mak, Darren Walsh, Mark Turnbull, Fiona E. N. LeBeau, Andrew Jackson, Andrew J. Trevelyan, and Gavin J. Clowry
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gene therapy ,AAV vector ,epilepsy ,neuroinflammation ,opsins ,microglia ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
IntroductionExpression of light sensitive ion channels by selected neurons has been achieved by viral mediated transduction with gene constructs, but for this to have therapeutic uses, for instance in treating epilepsy, any adverse effects of viral infection on the cerebral cortex needs to be evaluated. Here, we assessed the impact of adeno-associated virus 8 (AAV8) carrying DNA code for a soma targeting light activated chloride channel/FusionRed (FR) construct under the CKIIa promoter.MethodsViral constructs were harvested from transfected HEK293 cells in vitro and purified. To test functionality of the opsin, cultured rodent neurons were transduced and the light response of transduced neurons was assayed using whole-cell patch-clamp recordings. In vivo expression was confirmed by immunofluorescence for FR. Unilateral intracranial injections of the viral construct were made into the mouse neocortex and non-invasive fluorescence imaging of FR expression made over 1–4 weeks post-injection using an IVIS Spectrum system. Sections were also prepared from injected mouse cortex for immunofluorescence staining of FR, alongside glial and neuronal marker proteins.ResultsIn vitro, cortical neurons were successfully transduced, showing appropriate physiological responses to light stimulation. Following injections in vivo, transduction was progressively established around a focal injection site over a 4-week period with spread of transduction proportional to the concentration of virus introduced. Elevated GFAP immunoreactivity, a marker for reactive astrocytes, was detected near injection sites associated with, and proportional to, local FR expression. Similarly, we observed reactive microglia around FR expressing cells. However, we found that the numbers of NeuN+ neurons were conserved close to the injection site, indicating that there was little or no neuronal loss. In control mice, injected with saline only, astrocytosis and microgliosis was limited to the immediate vicinity of the injection site. Injections of opsin negative viral constructs resulted in comparable levels of astrocytic reaction as seen with opsin positive constructs.DiscussionWe conclude that introduction of an AAV8 vector transducing expression of a transgene under a neuron specific promotor evokes a mild inflammatory reaction in cortical tissue without causing extensive short-term neuronal loss. The expression of an opsin in addition to a fluorescent protein does not significantly increase neuroinflammation.
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- 2024
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4. The unifying catalytic mechanism of the RING-between-RING E3 ubiquitin ligase family
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Xiangyi S. Wang, Thomas R. Cotton, Sarah J. Trevelyan, Lachlan W. Richardson, Wei Ting Lee, John Silke, and Bernhard C. Lechtenberg
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Science - Abstract
RBR E3 ubiquitin ligases utilise a 2-step catalytic mechanism previously defined for only few of the RBR family members. Here, the authors examine the poorly studied RBRs HOIL-1 and RNF216 to define general principles of RBR catalysis and regulation and identify specific functional differences.
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- 2023
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5. Energy Budget Characterisation of the Optimal Disturbance in Stratified Shear Flow
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Larry E. Godwin, Philip M. J. Trevelyan, Takeshi Akinaga, and Sotos C. Generalis
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bifurcation ,stability ,nonlinear dynamics ,Taylor–Couette flow ,convection ,buoyancy ,Thermodynamics ,QC310.15-319 ,Descriptive and experimental mechanics ,QC120-168.85 - Abstract
Stratified Taylor–Couette flow (STCF) undergoes transient growth. Recent studies have shown that there exists transient amplification in the linear regime of counter-rotating STCF. The kinetic budget of the optimal transient perturbation is analysed numerically to simulate the interaction of the shear production (SP), buoyancy flux (BP), and other energy components that contributes to the total optimal transient kinetic energy. These contributions affect the total energy by influencing the perturbation to extract kinetic energy (KE) from the mean flow. The decay of the amplification factor resulted from the positive amplification of both BP and SP, while the growth is attributed to the negative and positive amplification of BP and SP, respectively. The optimal SP is positively amplified, implying that there is the possibility of constant linear growth. These findings agree with the linear growth rate for increasing values of Grashof number.
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- 2024
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6. Optogenetic ion pumps differ with respect to the secondary pattern of K+ redistribution
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R. Ryley Parrish, Tom Jackson‐Taylor, Juha Voipio, and Andrew J. Trevelyan
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archaerhodopsin ,chloride ,chloride‐cation‐cotransporter ,halorhodopsin ,potassium ,Physiology ,QP1-981 - Abstract
Abstract We recently reported that strong activation of the optogenetic chloride pump, halorhodopsin leads to a secondary redistribution of K+ ions into the cell, through tonically open, “leak” K+ channels. Here we show that this effect is not unique to halorhodopsin but is also seen with activation of another electrogenic ion pump, archaerhodopsin. The two opsins differ however in the size of the rebound rise in extracellular potassium, [K+]o, after the end of activation, which is far larger with halorhodopsin than for archaerhodopsin activation. Multiple linear regression modeling indicates that the variance in the postillumination surge in [K+]o was explained both by the size of the preceding, illumination‐induced drop in [K+]o and also by the type of opsin. These data provide additional support for the hypothesis that intense chloride‐loading of cells, as occurs naturally following intense bursts of GABAergic synaptic bombardment, or artificially following halorhodopsin activation, is followed by extrusion of both Cl− and K+ coupled together. We discuss this with respect to the pattern of [K+]o rise that occurs at the onset of seizure‐like events.
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- 2023
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7. Transient Dynamics in Counter-Rotating Stratified Taylor–Couette Flow
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Larry E. Godwin, Philip M. J. Trevelyan, Takeshi Akinaga, and Sotos C. Generalis
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bifurcation ,stability ,nonlinear dynamics ,Taylor–Couette flow ,convection ,buoyancy ,Mathematics ,QA1-939 - Abstract
This study focuses on the investigation of stratified Taylor–Couette flow (STCF) using non-modal analysis, which has received relatively limited attention compared to other shear flows. The dynamics of perturbations under different temperature conditions are explored, and their patterns of amplification are analyzed. The study highlights the correlation between flow configurations, emphasizing the similarity in transient dynamics despite different speed ratios. The subcritical effects of thermal stratification on disturbance dynamics are examined, considering the interplay between viscous and buoyancy effects counteracted by strong centrifugal forces. It is found that increasing the wall temperature beyond a critical value leads to buoyancy forces dominating, resulting in a linear increase in the amplification factor. The research reveals significant deviations from previous results, indicating the significant role of temperature stratification.
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- 2023
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8. m6A Regulates the Stability of Cellular Transcripts Required for Efficient KSHV Lytic Replication
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Oliver Manners, Belinda Baquero-Perez, Timothy J. Mottram, Ivaylo D. Yonchev, Christopher J. Trevelyan, Katherine L. Harper, Sarah Menezes, Molly R. Patterson, Andrew Macdonald, Stuart A. Wilson, Julie L. Aspden, and Adrian Whitehouse
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KSHV ,m6A methylation ,RNA modification ,lytic replication ,GPCR5A ,cell signalling ,Microbiology ,QR1-502 - Abstract
The epitranscriptomic modification N6-methyladenosine (m6A) is a ubiquitous feature of the mammalian transcriptome. It modulates mRNA fate and dynamics to exert regulatory control over numerous cellular processes and disease pathways, including viral infection. Kaposi’s sarcoma-associated herpesvirus (KSHV) reactivation from the latent phase leads to the redistribution of m6A topology upon both viral and cellular mRNAs within infected cells. Here we investigate the role of m6A in cellular transcripts upregulated during KSHV lytic replication. Our results show that m6A is crucial for the stability of the GPRC5A mRNA, whose expression is induced by the KSHV latent–lytic switch master regulator, the replication and transcription activator (RTA) protein. Moreover, we demonstrate that GPRC5A is essential for efficient KSHV lytic replication by directly regulating NFκB signalling. Overall, this work highlights the central importance of m6A in modulating cellular gene expression to influence viral infection.
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- 2023
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9. Resilient Hippocampal Gamma Rhythmogenesis and Parvalbumin-Expressing Interneuron Function Before and After Plaque Burden in 5xFAD Alzheimer’s Disease Model
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Connie A. Mackenzie-Gray Scott, Kenneth A. Pelkey, Adam P. Caccavano, Daniel Abebe, Mandy Lai, Khayla N. Black, Nicolette D. Brown, Andrew J. Trevelyan, and Chris J. McBain
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gamma oscillations ,5xFAD ,parvalbumin interneurons ,Alzheimer’s disease ,carbachol ,kainate ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Recent studies have implicated impaired Parvalbumin Fast-Spiking Interneuron (PVIN) function as a precipitating factor underlying abnormalities in network synchrony, oscillatory rhythms, and cognition associated with Alzheimer’s disease (AD). However, a complete developmental investigation of potential gamma deficits, induced by commonly used carbachol or kainate in ex vivo slice preparations, within AD model mice is lacking. We examined gamma oscillations using field recordings in acute hippocampal slices from 5xFAD and control mice, through the period of developing pathology, starting at 3 months of age, when there is minimal plaque presence in the hippocampus, through to 12+ months of age, when plaque burden is high. In addition, we examined PVIN participation in gamma rhythms using targeted cell-attached recordings of genetically-reported PVINs, in both wild type and mutant mice. In parallel, a developmental immunohistochemical characterisation probing the PVIN-associated expression of PV and perineuronal nets (PNNs) was compared between control and 5xFAD mice. Remarkably, this comprehensive longitudinal evaluation failed to reveal any obvious correlations between PVIN deficits (electrical and molecular), circuit rhythmogenesis (gamma frequency and power), and Aβ deposits/plaque formation. By 6–12 months, 5xFAD animals have extensive plaque formation throughout the hippocampus. However, a deficit in gamma oscillatory power was only evident in the oldest 5xFAD animals (12+ months), and only when using kainate, and not carbachol, to induce the oscillations. We found no difference in PV firing or phase preference during kainate-induced oscillations in younger or older 5xFAD mice compared to control, and a reduction of PV and PNNs only in the oldest 5xFAD mice. The lack of a clear relationship between PVIN function, network rhythmicity, and plaque formation in our study highlights an unexpected resilience in PVIN function in the face of extensive plaque pathology associated with this model, calling into question the presumptive link between PVIN pathology and Alzheimer’s progression.
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- 2022
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10. Exotic dynamics of bimolecular reaction-diffusion fronts in immiscible systems.
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Sotirios C. Generalis, Anne De Wit, and Philip M. J. Trevelyan
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- 2023
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11. Modulation of brain cation-Cl− cotransport via the SPAK kinase inhibitor ZT-1a
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Jinwei Zhang, Mohammad Iqbal H. Bhuiyan, Ting Zhang, Jason K. Karimy, Zhijuan Wu, Victoria M. Fiesler, Jingfang Zhang, Huachen Huang, Md Nabiul Hasan, Anna E. Skrzypiec, Mariusz Mucha, Daniel Duran, Wei Huang, Robert Pawlak, Lesley M. Foley, T. Kevin Hitchens, Margaret B. Minnigh, Samuel M. Poloyac, Seth L. Alper, Bradley J. Molyneaux, Andrew J. Trevelyan, Kristopher T. Kahle, Dandan Sun, and Xianming Deng
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Science - Abstract
SPAK kinase is a master regulator of cation-Cl− cotransporters. Here the authors describe a new SPAK inhibitor with robust protective effects in rodent hydrocephalous and ischemic stroke models.
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- 2020
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12. Multiscale recordings reveal the dynamic spatial structure of human seizures
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Catherine A. Schevon, Steven Tobochnik, Tahra Eissa, Edward Merricks, Brian Gill, R. Ryley Parrish, Lisa M. Bateman, Guy M. McKhann, Jr, Ronald G. Emerson, and Andrew J. Trevelyan
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Epilepsy ,Human single unit activity ,Focal seizures ,Surround inhibition ,Seizure localization ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
The cellular activity underlying human focal seizures, and its relationship to key signatures in the EEG recordings used for therapeutic purposes, has not been well characterized despite many years of investigation both in laboratory and clinical settings. The increasing use of microelectrodes in epilepsy surgery patients has made it possible to apply principles derived from laboratory research to the problem of mapping the spatiotemporal structure of human focal seizures, and characterizing the corresponding EEG signatures. In this review, we describe results from human microelectrode studies, discuss some data interpretation pitfalls, and explain the current understanding of the key mechanisms of ictogenesis and seizure spread.
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- 2019
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13. Training future generations to deliver evidence‐based conservation and ecosystem management
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Harriet Downey, Tatsuya Amano, Marc Cadotte, Carly N. Cook, Steven J. Cooke, Neal R. Haddaway, Julia P. G. Jones, Nick Littlewood, Jessica C. Walsh, Mark I. Abrahams, Gilbert Adum, Munemitsu Akasaka, Jose A. Alves, Rachael E. Antwis, Eduardo C. Arellano, Jan Axmacher, Holly Barclay, Lesley Batty, Ana Benítez‐López, Joseph R. Bennett, Maureen J. Berg, Sandro Bertolino, Duan Biggs, Friederike C. Bolam, Tim Bray, Barry W. Brook, Joseph W. Bull, Zuzana Burivalova, Mar Cabeza, Alienor L. M. Chauvenet, Alec P. Christie, Lorna Cole, Alison J. Cotton, Sam Cotton, Sara A. O. Cousins, Dylan Craven, Will Cresswell, Jeremy J. Cusack, Sarah E. Dalrymple, Zoe G. Davies, Anita Diaz, Jennifer A. Dodd, Adam Felton, Erica Fleishman, Charlie J. Gardner, Ruth Garside, Arash Ghoddousi, James J. Gilroy, David A. Gill, Jennifer A. Gill, Louise Glew, Matthew J. Grainger, Amelia A. Grass, Stephanie Greshon, Jamie Gundry, Tom Hart, Charlotte R. Hopkins, Caroline Howe, Arlyne Johnson, Kelly W. Jones, Neil R. Jordan, Taku Kadoya, Daphne Kerhoas, Julia Koricheva, Tien Ming Lee, Szabolcs Lengyel, Stuart W. Livingstone, Ashley Lyons, Gráinne McCabe, Jonathan Millett, Chloë Montes Strevens, Adam Moolna, Hannah L. Mossman, Nibedita Mukherjee, Andrés Muñoz‐Sáez, Nuno Negrões, Olivia Norfolk, Takeshi Osawa, Sarah Papworth, Kirsty J. Park, Jérôme Pellet, Andrea D. Phillott, Joshua M. Plotnik, Dolly Priatna, Alejandra G. Ramos, Nicola Randall, Rob M. Richards, Euan G. Ritchie, David L. Roberts, Ricardo Rocha, Jon Paul Rodríguez, Roy Sanderson, Takehiro Sasaki, Sini Savilaakso, Carl Sayer, Cagan Sekercioglu, Masayuki Senzaki, Grania Smith, Robert J. Smith, Masashi Soga, Carl D. Soulsbury, Mark D. Steer, Gavin Stewart, E. F. Strange, Andrew J. Suggitt, Ralph R. J. Thompson, Stewart Thompson, Ian Thornhill, R. J. Trevelyan, Hope O. Usieta, Oscar Venter, Amanda D. Webber, Rachel L. White, Mark J. Whittingham, Andrew Wilby, Richard W. Yarnell, Veronica Zamora‐Gutierrez, and William J. Sutherland
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critical thinking ,education ,evidence ,open access ,Environmental sciences ,GE1-350 ,Ecology ,QH540-549.5 - Abstract
Abstract 1. To be effective, the next generation of conservation practitioners and managers need to be critical thinkers with a deep understanding of how to make evidence‐based decisions and of the value of evidence synthesis. 2. If, as educators, we do not make these priorities a core part of what we teach, we are failing to prepare our students to make an effective contribution to conservation practice. 3. To help overcome this problem we have created open access online teaching materials in multiple languages that are stored in Applied Ecology Resources. So far, 117 educators from 23 countries have acknowledged the importance of this and are already teaching or about to teach skills in appraising or using evidence in conservation decision‐making. This includes 145 undergraduate, postgraduate or professional development courses. 4. We call for wider teaching of the tools and skills that facilitate evidence‐based conservation and also suggest that providing online teaching materials in multiple languages could be beneficial for improving global understanding of other subject areas.
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- 2021
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14. A mathematical model of nutrient influence on fungal competition
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Jabed A. Choudhury, M., M. J. Trevelyan, Philip, and P. Boswell, Graeme
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- 2018
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15. Chloride dynamics alter the input-output properties of neurons.
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Christopher B Currin, Andrew J Trevelyan, Colin J Akerman, and Joseph V Raimondo
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Biology (General) ,QH301-705.5 - Abstract
Fast synaptic inhibition is a critical determinant of neuronal output, with subcellular targeting of synaptic inhibition able to exert different transformations of the neuronal input-output function. At the receptor level, synaptic inhibition is primarily mediated by chloride-permeable Type A GABA receptors. Consequently, dynamics in the neuronal chloride concentration can alter the functional properties of inhibitory synapses. How differences in the spatial targeting of inhibitory synapses interact with intracellular chloride dynamics to modulate the input-output function of neurons is not well understood. To address this, we developed computational models of multi-compartment neurons that incorporate experimentally parametrised mechanisms to account for neuronal chloride influx, diffusion, and extrusion. We found that synaptic input (either excitatory, inhibitory, or both) can lead to subcellular variations in chloride concentration, despite a uniform distribution of chloride extrusion mechanisms. Accounting for chloride changes resulted in substantial alterations in the neuronal input-output function. This was particularly the case for peripherally targeted dendritic inhibition where dynamic chloride compromised the ability of inhibition to offset neuronal input-output curves. Our simulations revealed that progressive changes in chloride concentration mean that the neuronal input-output function is not static but varies significantly as a function of the duration of synaptic drive. Finally, we found that the observed effects of dynamic chloride on neuronal output were mediated by changes in the dendritic reversal potential for GABA. Our findings provide a framework for understanding the computational effects of chloride dynamics on dendritically targeted synaptic inhibition.
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- 2020
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16. Graphical user interface for simultaneous profiling of activity patterns in multiple neuronal subclasses
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R. Ryley Parrish, John Grady, Neela K. Codadu, Claudia Racca, and Andrew J. Trevelyan
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Computer applications to medicine. Medical informatics ,R858-859.7 ,Science (General) ,Q1-390 - Abstract
We provide notes on how to use a graphical user interface (GUI), implemented with MATLAB, for aligning imaging datasets of biological tissue. The original use was for matching two imaging data sets, where one set was taken of the living preparation and another was taken post-fixation and following immunohistochemical processing. This technique is described in detail in an accompanying paper (Parrish et al., [1], where we also include information about the experimental procedures, and examples of the usage of the GUI. Keywords: Pyramidal neurons, Interneurons, Glia, Astrocytes, MATLAB, Immunohistochemistry, Ca2+ imaging
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- 2018
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17. Indirect Effects of Halorhodopsin Activation: Potassium Redistribution, Nonspecific Inhibition, and Spreading Depolarization
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R. Ryley Parrish, Connie MacKenzie-Gray Scott, Tom Jackson-Taylor, Alex Grundmann, Faye McLeod, Neela K. Codadu, Alexandru Călin, Hannah Alfonsa, Rob C. Wykes, Juha Voipio, and Andrew J. Trevelyan
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General Neuroscience - Abstract
The movement of ions in and out of neurons can exert significant effects on neighboring cells. Here we report several experimentally important consequences of activation of the optogenetic chloride pump, halorhodopsin. We recorded extracellular K+concentration ([K+]extra) in neocortical brain slices prepared from young adult mice (both sexes) which express halorhodopsin in pyramidal cells. Strong halorhodopsin activation induced a pronounced drop in [K+]extrathat persisted for the duration of illumination. Pharmacological blockade of K+channels reduced the amplitude of this drop, indicating that it represents K+redistribution into cells during the period of hyperpolarization. Halorhodopsin thus drives the inward movement of both Cl–directly, and K+secondarily. When the illumination period ended, a rebound surge in extracellular [K+] developed over tens of seconds, partly reflecting the previous inward redistribution of K+, but additionally driven by clearance of Cl–coupled to K+by the potassium-chloride cotransporter, KCC2. The drop in [K+]extraduring light activation leads to a small (2-3 mV) hyperpolarization also of other cells that do not express halorhodopsin. Its activation therefore has both direct and indirect inhibitory effects. Finally, we show that persistent strong activation of halorhodopsin causes cortical spreading depolarizations (CSDs), bothin vitroandin vivo. This novel means of triggering CSDs is unusual, in that the events can arise during the actual period of illumination, when neurons are being hyperpolarized and [K+]extrais low. We suggest that this fundamentally different experimental model of CSDs will open up new avenues of research to explain how they occur naturally.SIGNIFICANCE STATEMENTHalorhodopsin is a light-activated electrogenic chloride pump, which has been widely used to inhibit neurons optogenetically. Here, we demonstrate three previously unrecognized consequences of its use: (1) intense activation leads to secondary movement of K+ions into the cells; (2) the resultant drop in extracellular [K+] reduces excitability also in other, nonexpressing cells; and (3) intense persistent halorhodopsin activation can trigger cortical spreading depolarization (CSD). Halorhodopsin-induced CSDs can occur when neurons are hyperpolarized and extracellular [K+] is low. This contrasts with the most widely used experimental models that trigger CSDs with high [K+]. Both models, however, are consistent with the hypothesis that CSDs arise following net inward ionic movement into the principal neuron population.
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- 2022
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18. MicroRNA-214 in Health and Disease
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Meer M. J. Amin, Christopher J. Trevelyan, and Neil A. Turner
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microRNAs ,cardiovascular ,cancer ,bone ,cell differentiation ,Cytology ,QH573-671 - Abstract
MicroRNAs (miRNAs) are endogenously expressed, non-coding RNA molecules that mediate the post-transcriptional repression and degradation of mRNAs by targeting their 3′ untranslated region (3′-UTR). Thousands of miRNAs have been identified since their first discovery in 1993, and miR-214 was first reported to promote apoptosis in HeLa cells. Presently, miR-214 is implicated in an extensive range of conditions such as cardiovascular diseases, cancers, bone formation and cell differentiation. MiR-214 has shown pleiotropic roles in contributing to the progression of diseases such as gastric and lung cancers but may also confer cardioprotection against excessive fibrosis and oxidative damage. These contrasting functions are achieved through the diverse cast of miR-214 targets. Through silencing or overexpressing miR-214, the detrimental effects can be attenuated, and the beneficial effects promoted in order to improve health outcomes. Therefore, discovering novel miR-214 targets and understanding how miR-214 is dysregulated in human diseases may eventually lead to miRNA-based therapies. MiR-214 has also shown promise as a diagnostic biomarker in identifying breast cancer and coronary artery disease. This review provides an up-to-date discussion of miR-214 literature by describing relevant roles in health and disease, areas of disagreement, and the future direction of the field.
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- 2021
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19. Coagulation Factor Xa Induces Proinflammatory Responses in Cardiac Fibroblasts via Activation of Protease-Activated Receptor-1
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Elisa D’Alessandro, Billy Scaf, Chantal Munts, Arne van Hunnik, Christopher J. Trevelyan, Sander Verheule, Henri M. H. Spronk, Neil A. Turner, Hugo ten Cate, Ulrich Schotten, and Frans A. van Nieuwenhoven
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coagulation FXa ,cardiac fibroblasts ,inflammation ,PARs ,Cytology ,QH573-671 - Abstract
Coagulation factor (F) Xa induces proinflammatory responses through activation of protease-activated receptors (PARs). However, the effect of FXa on cardiac fibroblasts (CFs) and the contribution of PARs in FXa-induced cellular signalling in CF has not been fully characterised. To answer these questions, human and rat CFs were incubated with FXa (or TRAP-14, PAR-1 agonist). Gene expression of pro-fibrotic and proinflammatory markers was determined by qRT-PCR after 4 and 24 h. Gene silencing of F2R (PAR-1) and F2RL1 (PAR-2) was achieved using siRNA. MCP-1 protein levels were measured by ELISA of FXa-conditioned media at 24 h. Cell proliferation was assessed after 24 h of incubation with FXa ± SCH79797 (PAR-1 antagonist). In rat CFs, FXa induced upregulation of Ccl2 (MCP-1; >30-fold at 4 h in atrial and ventricular CF) and Il6 (IL-6; ±7-fold at 4 h in ventricular CF). Increased MCP-1 protein levels were detected in FXa-conditioned media at 24 h. In human CF, FXa upregulated the gene expression of CCL2 (>3-fold) and IL6 (>4-fold) at 4 h. Silencing of F2R (PAR-1 gene), but not F2RL1 (PAR-2 gene), downregulated this effect. Selective activation of PAR-1 by TRAP-14 increased CCL2 and IL6 gene expression; this was prevented by F2R (PAR-1 gene) knockdown. Moreover, SCH79797 decreased FXa-induced proliferation after 24 h. In conclusion, our study shows that FXa induces overexpression of proinflammatory genes in human CFs via PAR-1, which was found to be the most abundant PARs isoform in this cell type.
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- 2021
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20. Synergistic Positive Feedback Mechanisms Underlying Seizure Initiation
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Andrew J. Trevelyan, Robert T. Graham, R. Ryley Parrish, and Neela K. Codadu
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Neurology (clinical) - Abstract
Investigations into seizure initiation, in recent years, have focused almost entirely upon alterations of interneuronal function, chloride homeostasis, and extracellular potassium levels. In contrast, little attention has been directed toward a possible role of dendritic plateau potentials in the actual ictogenic transition, despite a substantial literature dating back 40 years regarding its importance generally in epilepsy. Here, we argue that an increase in dendritic excitability, coordinated across the population of pyramidal cells, is a key stage in ictogenesis.
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- 2022
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21. Divergent paths to seizure‐like events
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Neela K. Codadu, Robert T. Graham, Richard J. Burman, R. Thomas Jackson‐Taylor, Joseph V. Raimondo, Andrew J. Trevelyan, and R. Ryley Parrish
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Epilepsy ,ictal events ,interneurons ,interictal events ,Physiology ,QP1-981 - Abstract
Abstract Much debate exists about how the brain transitions into an epileptic seizure. One source of confusion is that there are likely to be critical differences between experimental seizure models. To address this, we have compared the evolving activity patterns in two widely used in vitro models of epileptic discharges. Brain slices from young adult mice were prepared in the same way and bathed either in 0 Mg2+ or 100 µmol/L 4AP artificial cerebrospinal fluid. We have found that while local field potential recordings of epileptiform discharges in the two models appear broadly similar, patch‐clamp analysis reveals an important difference in the relative degree of glutamatergic involvement. 4AP affects parvalbumin‐expressing interneurons more than other cortical populations, destabilizing their resting state and inducing spontaneous bursting behavior. Consequently, the most prominent pattern of transient discharge (“interictal event”) in this model is almost purely GABAergic, although the transition to seizure‐like events (SLEs) involves pyramidal recruitment. In contrast, interictal discharges in 0 Mg2+ are only maintained by a very large glutamatergic component that also involves transient discharges of the interneurons. Seizure‐like events in 0 Mg2+ have significantly higher power in the high gamma frequency band (60–120Hz) than these events do in 4AP, and are greatly delayed in onset by diazepam, unlike 4AP events. We, therefore, conclude that the 0 Mg2+ and 4AP models display fundamentally different levels of glutamatergic drive, demonstrating how ostensibly similar pathological discharges can arise from different sources. We contend that similar interpretative issues will also be relevant to clinical practice.
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- 2019
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22. Cl-out is a novel cooperative optogenetic tool for extruding chloride from neurons
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Hannah Alfonsa, Jeremy H. Lakey, Robert N. Lightowlers, and Andrew J. Trevelyan
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Science - Abstract
Chloride regulation is important for setting GABAergic reversal potential, though tools to manipulate chloride levels are limited. Here, the authors combine Archaerhodopsin with a chloride channel opsin to generate an optogenetic chloride extrusion strategy, ‘Cl-out’, which they demonstrate in hippocampal slices.
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- 2016
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23. The ictal wavefront is the spatiotemporal source of discharges during spontaneous human seizures
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Elliot H. Smith, Jyun-you Liou, Tyler S. Davis, Edward M. Merricks, Spencer S. Kellis, Shennan A. Weiss, Bradley Greger, Paul A. House, Guy M. McKhann II, Robert R. Goodman, Ronald G. Emerson, Lisa M. Bateman, Andrew J. Trevelyan, and Catherine A. Schevon
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Science - Abstract
Epileptic brains display inhibitory restraint as manifested by the spread of synchronized activities being delayed in timing. Here, Elliot Smith and colleagues show fast-moving traveling wave that originates from the edge of ictal wavefront with subsequent depolarization and multiunit firing in the seizing brain regions in epileptic patients.
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- 2016
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24. A debate on the neuronal origin of focal seizures
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Michael Wenzel, Gilles Huberfeld, David B. Grayden, Marco de Curtis, and Andrew J. Trevelyan
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Neurology ,Neurology (clinical) - Published
- 2023
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25. The solution of the wave-diffusion equation by a caputo derivative-based finite element method formulation
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R. M. Corrêa, J. A. M. Carrer, B. S. Solheid, J. Trevelyan, M. Arndt, and R. D. Machado
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Mechanical Engineering ,Applied Mathematics ,Automotive Engineering ,General Engineering ,Aerospace Engineering ,Industrial and Manufacturing Engineering - Published
- 2023
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26. Optogenetic ion pumps differ with respect to the secondary pattern of K+redistribution
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R. Ryley Parrish, Tom Jackson-Taylor, Juha Voipio, and Andrew J. Trevelyan
- Abstract
We recently reported that strong activation of the optogenetic chloride pump, Halorhodopsin leads to a secondary redistribution of K+ions into the cell, through tonically open, “leak” K+channels. Here we show that this effect is not unique to halorhodopsin, but is also seen with activation of another electrogenic ion pump, archaerhodopsin. The two opsins differ however in the size of the rebound rise in extracellular potassium, [K+]o, after the end of activation, which is far larger with halorhodopsin than for archaerhodopsin activation. Multiple linear regression modelling indicates that most of the variance in the post-illumination surge in [K+]o was explained by the type of opsin, and almost nothing by the size of the preceding, illumination-induced drop in [K+]o. These data provide additional support for the hypothesis that intense chloride-loading of cells, as occurs naturally following intense bursts of GABAergic synaptic bombardment, or artificially following halorhodopsin activation, is followed by extrusion of both Cl and K+coupled together. We discuss this with respect to the pattern of [K+]o rise that occurs at the onset of seizure-like events.
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- 2023
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27. Cell-type specific and multiscale dynamics of human focal seizures in limbic structures
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Alexander H. Agopyan-Miu, Edward M. Merricks, Elliot H. Smith, Guy M. McKhann, Sameer A. Sheth, Neil A. Feldstein, Andrew J. Trevelyan, and Catherine A. Schevon
- Abstract
The relationship between clinically accessible epileptic biomarkers and neuronal activity underlying the seizure transition is complex, potentially leading to imprecise delineation of epileptogenic brain areas. In particular, the pattern of interneuronal firing at seizure onset remains under debate, with some studies demonstrating increased firing while others suggest reductions. Previous study of neocortical sites suggests that seizure recruitment occurs upon failure of inhibition, with intact feedforward inhibition in non-recruited territories. We investigated whether the same principles applied also in limbic structures.We analyzed simultaneous ECoG and neuronal recordings during 34 seizures in a cohort of 19 patients (10 male, 9 female) undergoing surgical evaluation for pharmacoresistant focal epilepsy. A clustering approach with five quantitative metrics computed from ECoG and multiunit data was used to distinguish three types of site-specific activity patterns during seizures, at times co-existing within seizures. 156 single-units were isolated, subclassified by cell-type, and tracked through the seizure using our previously published methods to account for impacts of increased noise and single-unit waveshape changes caused by seizures.One cluster was closely associated with clinically defined seizure onset or spread. Entrainment of high-gamma activity to low-frequency ictal rhythms was the only metric that reliably identified this cluster at the level of individual seizures (p< 0.001). A second cluster demonstrated multi-unit characteristics resembling those in the first cluster, without concomitant high-gamma entrainment, suggesting feedforward effects from the seizure. The last cluster captured regions apparently unaffected by the ongoing seizure. Across all territories, the majority of both excitatory and inhibitory neurons reduced (69.2%) or ceased firing (21.8%). Transient increases in interneuronal firing rates were rare (13.5%) but showed evidence of intact feedforward inhibition with maximal firing rate increases and waveshape deformations in territories not fully recruited but showing feedforward activity from the seizure, and a shift to burst-firing in seizure-recruited territories (p= 0.014).This study provides evidence for entrained high gamma activity as an accurate biomarker of ictal recruitment in limbic structures. However, our results of reduced neuronal firing suggest preserved inhibition in mesial temporal structures despite simultaneous indicators of seizure recruitment, in contrast to the inhibitory collapse scenario documented in neocortex. Further study is needed to determine if this activity is ubiquitous to hippocampal seizures or if it indicates a “seizure-responsive” state in which the hippocampus is not the primary driver. If the latter, distinguishing such cases may help refine surgical treatment of mesial temporal lobe epilepsy.
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- 2023
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28. Indirect Effects of Halorhodopsin Activation: Potassium Redistribution, Nonspecific Inhibition, and Spreading Depolarization
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Parrish RR, MacKenzie-Gray Scott C, Jackson-Taylor T, Grundmann A, McLeod F, Codadu NK, Calin A, Alfonsa H, Wykes RC, Voipio J, Trevelyan AJ
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- 2023
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29. Optogenetic stimulation reveals a latent tipping point in cortical networks during ictogenesis
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Robert T Graham, R Ryley Parrish, Laura Alberio, Emily L Johnson, Laura Owens, and Andrew J Trevelyan
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Neurology (clinical) - Abstract
Brain-state transitions are readily apparent from changes in brain rhythms,1 but are difficult to predict, suggestive that the underlying cause is latent to passive recording methods. Among the most important transitions, clinically, are the starts of seizures. We here show that an ‘active probing’ approach may have several important benefits for epileptic management, including by helping predict these transitions. We used mice expressing the optogenetic actuator, channelrhodopsin, in pyramidal cells, allowing this population to be stimulated in isolation. Intermittent stimulation at frequencies as low as 0.033 Hz (period = 30 s) delayed the onset of seizure-like events in an acute brain slice model of ictogenesis, but the effect was lost if stimulation was delivered at even lower frequencies (1/min). Notably, active probing additionally provides advance indication of when seizure-like activity is imminent, revealed by monitoring the postsynaptic response to stimulation. The postsynaptic response, recorded extracellularly, showed an all-or-nothing change in both amplitude and duration, a few hundred seconds before seizure-like activity began—a sufficient length of time to provide a helpful warning of an impending seizure. The change in the postsynaptic response then persisted for the remainder of the recording, indicative of a state change from a pre-epileptic to a pro-epileptic network. This occurred in parallel with a large increase in the stimulation-triggered Ca2+ entry into pyramidal dendrites, and a step increase in the number of evoked postsynaptic action potentials, both consistent with a reduction in the threshold for dendritic action potentials. In 0 Mg2+ bathing media, the reduced threshold was not associated with changes in glutamatergic synaptic function, nor of GABAergic release from either parvalbumin or somatostatin interneurons, but simulations indicate that the step change in the optogenetic response can instead arise from incremental increases in intracellular [Cl−]. The change in the response to stimulation was replicated by artificially raising intracellular [Cl−], using the optogenetic chloride pump, halorhodopsin. By contrast, increases in extracellular [K+] cannot account for the firing patterns in the response to stimulation, although this, and other cellular changes, may contribute to ictal initiation in other circumstances. We describe how these various cellular changes form a synergistic network of positive feedback mechanisms, which may explain the precipitous nature of seizure onset. This model of seizure initiation draws together several major lines of epilepsy research as well as providing an important proof-of-principle regarding the utility of open-loop brain stimulation for clinical management of the condition.
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- 2022
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30. Ferric carboxymaltose for iron deficiency at discharge after acute heart failure
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Stefano Savonitto, D Soon, V Tseluyko, J Heymeriks, L Petrescu, Fabio T. M. Costa, P Garcia Pacho, G Chapidze, Michael Motro, M Diez, A Prado, Piotr Ponikowski, Sanjib Kumar Sharma, DL Serban, A. Salvioni, S del Prado, Giuseppe Boriani, Stephan von Haehling, HG Cestari, PR Nierop, LC Iosipescu, Hans Kragten, Má Hominal, Bridget-Anne Kirwan, Andre Keren, D Horvat, J Thierer, D Sim, Rabih R. Azar, Peter van der Meer, G Stanciulescu, F Cosmi, Sy Loh, Jarosław Drożdż, David Sim, K Paposhvili, M Berli, Alain Cohen-Solal, Stefan D. Anker, Arnaout, ML Parody, GO Zapata, T Ben-Gal, J Schaap, Bas L.J.H. Kietselaer, O Raed, G Kiwan, Marco Metra, Shaul Atar, Udo Michael Göhring, Edoardo Gronda, A Ružić, C Beltrano, Dpw Beelen, Davor Milicic, R Ray, JM Weinstein, FI Ga Bosa Ojeda, Y-K Wong, Dalton Bertolim Précoma, Javed Butler, JR Gonzalez Juanatey, V Chumburidze, Gerasimos Filippatos, V Witzling, Y Malynovsky, I Kraiz, A Samodol, J Trevelyan, L Nigro Maia, M Stanislavchuk, Gilmar Reis, I Khintibidze, D Zdrenghea, Beata Wożakowska-Kapłon, BD Molina, C Abdallah, Ham van Kesteren, Tim Friede, Marcin Gruchała, Majdi Halabi, Ewa A. Jankowska, P Van Bergen, Constantin Militaru, O Koval, DA Darabantiu, A Kormann, J Szachniewicz, Maria Dorobantu, M van de Wetering, R Nijmeijer, H Hamdan, Stefano Ghio, Henry J. Dargie, G Azize, Nicolas Danchin, S Chaaban, S Gerward, P Pimentel Filho, M Uguccioni, K Abdelbaki, N Vita, J.F.K. Saraiva, D Almeida, Michael Shochat, M Ohlsson, R Van de Wal, V Zolotaikina, W Kinany, A Tycińska, A Hershson, T Shaburishvili, Vincent Fabien, FR dos Santos, Alfredo Bardají, Rgej Groutars, M Flugelman, J Bono, M Udovicic, M Artuković, K Šutalo, J Drozdz, TJ Yeo, F Ferre Pacora, Z Lominadze, M Emans, S Pettit, HA Luquez, P Terrosu, Marcus Ohlsson, M Gąsior, S Tušek, Enrico Passamonti, Nyy Al-Windy, P Midi, DA Pascual Figal, P van der Meer, V Zvi, Wilco Tanis, Felipe Martinez, RR Borelli, Diana A. Gorog, O Parhomenko, Klaus H Jensen, M Meijs, J Nessler, M Piepoli, DM Toader, Jose C. Nicolau, A Glenny, José Luis Zamorano, L Tilling, T McDonagh, K Pesek, H Fernandez, Davor Miličić, Domingo A. Pascual-Figal, Theresa McDonagh, G Khabeishvili, Josep Comin-Colet, Israel Gotsman, S Rassi, M Dorobantu, E Straburzyńska-Migaj, L Fattore, L Rudenko, D Crisu, S.S. Kabbani, M Gomez Bueno, Basil S. Lewis, S Goland, Y Arbel, M Bronisz, I Vakaliuk, A Fucili, A Mortara, R Zukermann, N Emukhvari, B Hassouna, K Mizia-Stec, F Turrini, R Szelemej, A Rodica Dan, L Lobo Marquez, Hadi Skouri, A Kabir, Frank Ruschitzka, R García Durán, R Gil, Michael Shechter, P Westendorp, Piergiuseppe Agostoni, A Fernandez, Oscar Pereira Dutra, P Ameri, Wolfram Doehner, JG Smith, Irakli Khintibidze, Luciano Moreira Baracioli, J Šikić, Stuart Pocock, Olivier C. Manintveld, MC Tomescu, M Di Biase, Luiz Carlos Bodanese, E Mirek-Bryniarska, Alexander Parkhomenko, Cardiovascular Centre (CVC), Restoring Organ Function by Means of Regenerative Medicine (REGENERATE), Cardiology, leboeuf, Christophe, Wrocław Medical University, London School of Hygiene and Tropical Medicine (LSHTM), Charité - UniversitätsMedizin = Charité - University Hospital [Berlin], King's College Hospital (KCH), Universitatea din Bucuresti (UB), University of Lódź, Vifor Pharma Ltd [Glattbrugg, Switzerland], National and Kapodistrian University of Athens (NKUA), Hadassah Hebrew University Medical Center [Jerusalem], Tbilisi State University, Maastricht University Medical Centre (MUMC), Maastricht University [Maastricht], Prague University of Economics and Business, Università degli Studi di Brescia = University of Brescia (UniBs), University of Zagreb, Universidade de São Paulo = University of São Paulo (USP), Skane University Hospital [Malmo], Lund University [Lund], National Scientific Center 'M.D. Strazhesko Institute of Cardiology' [Kyiv, Ukraine] (NSC/MDSIC), Universidad de Murcia, University hospital of Zurich [Zurich], National Heart Centre Singapore (NHCS), Saint Joseph Medical Center [Beirut], University Medical Center Groningen [Groningen] (UMCG), Clinical Cardiovascular Research Institute [Haifa, Israel] (2CRI), Bellvitge University Hospital [Barcelona, Spain], University Medical Center Göttingen (UMG), Biomarqueurs CArdioNeuroVASCulaires (BioCANVAS), Université Paris 13 (UP13)-Université Paris Diderot - Paris 7 (UPD7)-Institut National de la Santé et de la Recherche Médicale (INSERM), Hôpital Européen Georges Pompidou [APHP] (HEGP), Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Hôpitaux Universitaires Paris Ouest - Hôpitaux Universitaires Île de France Ouest (HUPO), Charité Campus Virchow-Klinikum (CVK), University of Glasgow, Tel Aviv University (TAU), University of Southern Mississippi (USM), Socar Research S.A. [Nyon, Switzerland] (SR), and AFFIRM-AHF investigators: G Azize, A Fernandez, G O Zapata, P Garcia Pacho, A Glenny, F Ferre Pacora, M L Parody, J Bono, C Beltrano, A Hershson, N Vita, H A Luquez, H G Cestari, H Fernandez, A Prado, M Berli, R García Durán, J Thierer, M Diez, L Lobo Marquez, R R Borelli, M Á Hominal, M Metra, P Ameri, P Agostoni, A Salvioni, L Fattore, E Gronda, S Ghio, F Turrini, M Uguccioni, M Di Biase, M Piepoli, S Savonitto, A Mortara, P Terrosu, A Fucili, G Boriani, P Midi, E Passamonti, F Cosmi, P van der Meer, P Van Bergen, M van de Wetering, Nyy Al-Windy, W Tanis, M Meijs, Rgej Groutars, Hks The, B Kietselaer, Ham van Kesteren, Dpw Beelen, J Heymeriks, R Van de Wal, J Schaap, M Emans, P Westendorp, P R Nierop, R Nijmeijer, O C Manintveld, M Dorobantu, D A Darabantiu, D Zdrenghea, D M Toader, L Petrescu, C Militaru, D Crisu, M C Tomescu, G Stanciulescu, A Rodica Dan, L C Iosipescu, D L Serban, J Drozdz, J Szachniewicz, M Bronisz, A Tycińska, B Wozakowska-Kaplon, E Mirek-Bryniarska, M Gruchała, J Nessler, E Straburzyńska-Migaj, K Mizia-Stec, R Szelemej, R Gil, M Gąsior, I Gotsman, M Halabi, M Shochat, M Shechter, V Witzling, R Zukermann, Y Arbel, M Flugelman, T Ben-Gal, V Zvi, W Kinany, J M Weinstein, S Atar, S Goland, D Milicic, D Horvat, S Tušek, M Udovicic, K Šutalo, A Samodol, K Pesek, M Artuković, A Ružić, J Šikić, T McDonagh, J Trevelyan, Y-K Wong, D Gorog, R Ray, S Pettit, S Sharma, A Kabir, H Hamdan, L Tilling, L Baracioli, L Nigro Maia, O Dutra, G Reis, P Pimentel Filho, J F Saraiva, A Kormann, F R Dos Santos, L Bodanese, D Almeida, D Precoma, S Rassi, F Costa, S Kabbani, K Abdelbaki, C Abdallah, M S Arnaout, R Azar, S Chaaban, O Raed, G Kiwan, B Hassouna, A Bardaji, J Zamorano, S Del Prado, J R Gonzalez Juanatey, F I Ga Bosa Ojeda, M Gomez Bueno, B D Molina, D A Pascual Figal, D Sim, T J Yeo, S Y Loh, D Soon, M Ohlsson, J G Smith, S Gerward, I Khintibidze, Z Lominadze, G Chapidze, N Emukhvari, G Khabeishvili, V Chumburidze, K Paposhvili, T Shaburishvili, G Khabeishvili, O Parhomenko, I Kraiz, O Koval, V Zolotaikina, Y Malynovsky, I Vakaliuk, L Rudenko, V Tseluyko, M Stanislavchuk.
- Subjects
Male ,medicine.medical_specialty ,Anemia ,030204 cardiovascular system & hematology ,Rate ratio ,Placebo ,Ferric Compounds ,Ventricular Function, Left ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,[SDV.MHEP.CSC]Life Sciences [q-bio]/Human health and pathology/Cardiology and cardiovascular system ,Double-Blind Method ,Randomized controlled trial ,law ,Internal medicine ,medicine ,Humans ,030212 general & internal medicine ,Maltose ,Adverse effect ,TOLVAPTAN ,Aged ,Aged, 80 and over ,Heart Failure ,RISK ,Ejection fraction ,Anemia, Iron-Deficiency ,business.industry ,MORTALITY ,Hazard ratio ,DEATH ,General Medicine ,Middle Aged ,medicine.disease ,Patient Discharge ,[SDV.MHEP.CSC] Life Sciences [q-bio]/Human health and pathology/Cardiology and cardiovascular system ,3. Good health ,Hospitalization ,Treatment Outcome ,Heart failure ,Administration, Intravenous ,Female ,HOSPITALIZATIONS ,business - Abstract
Background: Intravenous ferric carboxymaltose has been shown to improve symptoms and quality of life in patients with chronic heart failure and iron deficiency. We aimed to evaluate the effect of ferric carboxymaltose, compared with placebo, on outcomes in patients who were stabilised after an episode of acute heart failure. Methods: AFFIRM-AHF was a multicentre, double-blind, randomised trial done at 121 sites in Europe, South America, and Singapore. Eligible patients were aged 18 years or older, were hospitalised for acute heart failure with concomitant iron deficiency (defined as ferritin
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- 2020
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31. CPL library - A minimal framework for coupled particle and continuum simulation.
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Edward Ronald Smith, D. J. Trevelyan, Eduardo Ramos Fernandez, Adnan Sufian, Catherine O'Sullivan, and Daniele Dini
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- 2020
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32. Mechanisms underlying different onset patterns of focal seizures.
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Yujiang Wang, Andrew J Trevelyan, Antonio Valentin, Gonzalo Alarcon, Peter N Taylor, and Marcus Kaiser
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Biology (General) ,QH301-705.5 - Abstract
Focal seizures are episodes of pathological brain activity that appear to arise from a localised area of the brain. The onset patterns of focal seizure activity have been studied intensively, and they have largely been distinguished into two types-low amplitude fast oscillations (LAF), or high amplitude spikes (HAS). Here we explore whether these two patterns arise from fundamentally different mechanisms. Here, we use a previously established computational model of neocortical tissue, and validate it as an adequate model using clinical recordings of focal seizures. We then reproduce the two onset patterns in their most defining properties and investigate the possible mechanisms underlying the different focal seizure onset patterns in the model. We show that the two patterns are associated with different mechanisms at the spatial scale of a single ECoG electrode. The LAF onset is initiated by independent patches of localised activity, which slowly invade the surrounding tissue and coalesce over time. In contrast, the HAS onset is a global, systemic transition to a coexisting seizure state triggered by a local event. We find that such a global transition is enabled by an increase in the excitability of the "healthy" surrounding tissue, which by itself does not generate seizures, but can support seizure activity when incited. In our simulations, the difference in surrounding tissue excitability also offers a simple explanation of the clinically reported difference in surgical outcomes. Finally, we demonstrate in the model how changes in tissue excitability could be elucidated, in principle, using active stimulation. Taken together, our modelling results suggest that the excitability of the tissue surrounding the seizure core may play a determining role in the seizure onset pattern, as well as in the surgical outcome.
- Published
- 2017
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33. The unifying catalytic mechanism of the RING-between-RING E3 ligase family
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Xiangyi S. Wang, Thomas R. Cotton, Sarah J. Trevelyan, Lachlan W. Richardson, Wei Ting Lee, John Silke, and Bernhard C. Lechtenberg
- Abstract
The RING-between-RING (RBR) E3 ubiquitin ligase family in humans comprises 14 members and is defined by a two-step catalytic mechanism in which ubiquitin is first transferred from an E2 to the RBR active site and then to the substrate. To define the core features of this catalytic mechanism, we structurally and biochemically characterise the two RBRs HOIL-1 and RNF216. Crystal structures of both enzymes in their RBR/E2-Ub/Ub transthiolation complexes capturing the first catalytic step, in combination with complementary functional experiments, reveal the defining features of the RBR catalytic mechanism. RBRs catalyse ubiquitination via a conserved transthiolation complex structure that enables efficient E2-to-RBR ubiquitin transfer. Our data also highlight a conserved RBR allosteric mechanism by distinct ubiquitin linkages that suggests that RBRs employ a feed-forward mechanism accelerating their signalling pathways. We finally identify that the HOIL-1 RING2 domain contains an unusual Zn2/Cys6 bivalent zinc cluster that may represent a specific adaptation enabling HOIL-1’s atypical substrate specificity.
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- 2022
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34. Altered synaptic connectivity in an in vitro human model of STXBP1 encephalopathy
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Faye McLeod, Anna Dimtsi, Amy C Marshall, David Lewis-Smith, Rhys Thomas, Gavin J Clowry, and Andrew J Trevelyan
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Neurology (clinical) - Abstract
Early infantile developmental and epileptic encephalopathies are devastating conditions, generally of genetic origin, but the pathological mechanisms often remain obscure. A major obstacle in this field of research is the difficulty of studying cortical brain development in humans, at the relevant time period in utero. To address this, we established an in vitro assay to study the impact of gene variants on the developing human brain by using living organotypic cultures of the human subplate and neighbouring cortical regions, prepared from ethically sourced, 14–17 post-conception week brain tissue (www.hdbr.org). We were able to maintain cultures for several months, during which time the gross anatomical structures of the cortical plate, subplate and marginal zone persisted, while neurons continued to develop morphologically and form new synaptic networks. This preparation thus permits the study of genetic manipulations and their downstream effects on an intact developing human cortical network. We focused on STXBP1 haploinsufficiency, which is among the most common genetic causes of developmental and epileptic encephalopathy. This was induced using shRNA interference, leading to impaired synaptic function and a reduced density of glutamatergic synapses. We thereby provide a critical proof-of-principle for how to study the impact of any gene of interest on the development of the human cortex.
- Published
- 2022
35. Numerical evaluation of the two-dimensional partition of unity boundary integrals for Helmholtz problems.
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M. E. Honnor, J. Trevelyan, and Daan Huybrechs
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- 2010
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36. An integration scheme for electromagnetic scattering using plane wave edge elements.
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M. E. Honnor, J. Trevelyan, P. Bettess, M. El-hachemi, Oubay Hassan, Kenneth Morgan, and Joseph J. Shirron
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- 2009
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37. Neuronal Firing and Waveform Alterations through Ictal Recruitment in Humans
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Sameer A. Sheth, Paul A. House, Lisa M. Bateman, Robert R. Goodman, Andrew J. Trevelyan, Ronald G. Emerson, Guy M. McKhann, Bradley Greger, Edward M. Merricks, Catherine A. Schevon, and Elliot H. Smith
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Adult ,Male ,Recruitment, Neurophysiological ,0301 basic medicine ,Drug Resistant Epilepsy ,Neuronal firing ,Wavelet Analysis ,Action Potentials ,Biology ,Young Adult ,03 medical and health sciences ,Epilepsy ,0302 clinical medicine ,Seizures ,medicine ,Humans ,Waveform ,Premovement neuronal activity ,Ictal ,Research Articles ,030304 developmental biology ,Cerebral Cortex ,Neurons ,0303 health sciences ,General Neuroscience ,Electroencephalography ,Multielectrode array ,Middle Aged ,medicine.disease ,Brain Waves ,Cortex (botany) ,030104 developmental biology ,nervous system ,Spike sorting ,Ionic conductance ,Female ,Tonic firing ,Animal studies ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Clinical analyses of neuronal activity during seizures, invariably using extracellular recordings, is greatly hindered by various phenomena that are well established in animal studies: changes in local ionic concentration, changes in ionic conductance, and intense, hypersynchronous firing. The first two alter the action potential waveform, whereas the third increases the “noise”; all three factors confound attempts to detect and classify single neurons (units). To address these analytical difficulties, we developed a novel template-matching based spike sorting method, which enabled identification of 1,239 single units in 27 patients with intractable focal epilepsy, that were tracked throughout multiple seizures. These new analyses showed continued neuronal firing through the ictal transition, which was defined as a transient period of intense tonic firing consistent with previous descriptions of the ictal wavefront. After the ictal transition, neurons displayed increased spike duration (p < 0.001) and reduced spike amplitude (p < 0.001), in keeping with prior animal studies; units in non-recruited territories, by contrast, showed more stable waveforms. All units returned to their pre-ictal waveforms after seizure termination. Waveshape changes were stereotyped across seizures within patients. Our analyses of single neuron firing patterns, at the ictal wavefront, showed widespread intense activation, and commonly involving marked waveshape alteration. We conclude that the distinction between tissue that has been recruited to the seizure versus non-recruited territories is evident at the level of single neurons, and that increased waveform duration and decreased waveform amplitude are hallmarks of seizure invasion that could be used as defining characteristics of local recruitment.Significance StatementAnimal studies consistently show marked changes in action potential waveform during epileptic discharges, but acquiring similar evidence in humans has proved difficult. Assessing neuronal involvement in ictal events is pivotal to understanding seizure dynamics and in defining clinical localization of epileptic pathology. Using a novel method to track neuronal firing, we analyzed microelectrode array recordings of spontaneously occurring human seizures, and here report two dichotomous activity patterns. In cortex that is recruited to the seizure, neuronal firing rates increase and waveforms become longer in duration and shorter in amplitude, while penumbral tissue shows stable action potentials, in keeping with the “dual territory” model of seizure dynamics.
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- 2020
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38. Mathematical modelling of fungi-initiated siderophore–iron interactions
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Graeme P. Boswell, Philip M. J. Trevelyan, and M. Jabed A. Choudhury
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0301 basic medicine ,Siderophore ,Iron ,030106 microbiology ,Biological Transport, Active ,Siderophores ,Models, Biological ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,symbols.namesake ,Spatio-Temporal Analysis ,Computer Simulation ,Biomass ,Algebraic number ,General Environmental Science ,Mathematics ,Pharmacology ,Iron uptake ,Partial differential equation ,General Immunology and Microbiology ,Mathematical model ,Applied Mathematics ,General Neuroscience ,Fungi ,Mathematical Concepts ,General Medicine ,Function (mathematics) ,030104 developmental biology ,Distribution (mathematics) ,Modeling and Simulation ,symbols ,Biological system ,Bessel function - Abstract
Nearly all life forms require iron to survive and function. Microorganisms utilize a number of mechanisms to acquire iron including the production of siderophores, which are organic compounds that combine with ferric iron into forms that are easily absorbed by the microorganism. There has been significant experimental investigation into the role, distribution and function of siderophores in fungi but until now no predictive tools have been developed to qualify or quantify fungi-initiated siderophore–iron interactions. In this investigation, we construct the first mathematical models of siderophore function related to fungi. Initially, a set of partial differential equations are calibrated and integrated numerically to generate quantitative predictions on the spatio-temporal distributions of siderophores and related populations. This model is then reduced to a simpler set of equations that are solved algebraically giving rise to solutions that predict the distributions of siderophores and resultant compounds. These algebraic results require the calculation of zeros of cross products of Bessel functions and thus new algebraic expansions are derived for a variety of different cases that are in agreement with numerically computed values. The results of the modelling are consistent with experimental data while the analysis provides new quantitative predictions on the time scales involved between siderophore production and iron uptake along with how the total amount of iron acquired by the fungus depends on its environment. The implications to bio-technological applications are briefly discussed.
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- 2020
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39. Seizure pathways change on circadian and slower timescales in individual patients with focal epilepsy
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John S. Duncan, Rob Forsyth, Andrew Jackson, Yujiang Wang, Jane de Tisi, Peter N Taylor, Beate Diehl, Gabrielle M Schroeder, Fahmida A Chowdhury, and Andrew J. Trevelyan
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focal epilepsy ,Models, Biological ,Corrections ,intracranial EEG ,03 medical and health sciences ,Epilepsy ,0302 clinical medicine ,Seizures ,medicine ,Humans ,within-patient variability ,Circadian rhythm ,Pathological ,030304 developmental biology ,0303 health sciences ,Biological Variation, Individual ,Multidisciplinary ,business.industry ,Functional connectivity ,functional connectivity ,Biological Sciences ,Tailored treatment ,medicine.disease ,Intracranial eeg ,3. Good health ,Biophysics and Computational Biology ,Brain state ,seizure dynamics ,Physical Sciences ,Electrocorticography ,Epilepsies, Partial ,business ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Significance Epilepsy is an episodic disease characterized by brief periods of abnormal brain activity, known as seizures, that often have clinical correlates. In many patients, seizures preferentially happen during certain stages of daily and multiday cycles. However, it is unclear whether and how seizures themselves change over time, even though such variability may have clinical implications. To address this knowledge gap, we quantitatively analyze the nature of within-patient variability in seizure network evolutions. Contrary to common expectations, we find seizure variability throughout our cohort. Moreover, we demonstrate that seizures do not change randomly; instead, they also appear to fluctuate over daily and slower timescales. Ultimately, we may improve treatments by tailoring interventions to the full repertoire of seizures in each patient., Personalized medicine requires that treatments adapt to not only the patient but also changing factors within each individual. Although epilepsy is a dynamic disorder characterized by pathological fluctuations in brain state, surprisingly little is known about whether and how seizures vary in the same patient. We quantitatively compared within-patient seizure network evolutions using intracranial electroencephalographic (iEEG) recordings of over 500 seizures from 31 patients with focal epilepsy (mean 16.5 seizures per patient). In all patients, we found variability in seizure paths through the space of possible network dynamics. Seizures with similar pathways tended to occur closer together in time, and a simple model suggested that seizure pathways change on circadian and/or slower timescales in the majority of patients. These temporal relationships occurred independent of whether the patient underwent antiepileptic medication reduction. Our results suggest that various modulatory processes, operating at different timescales, shape within-patient seizure evolutions, leading to variable seizure pathways that may require tailored treatment approaches.
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- 2020
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40. Rayleigh–Taylor instabilities in miscible fluids with initially piecewise linear density profiles
- Author
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S. Cowell, James Kent, and Philip M. J. Trevelyan
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Physics ,General Mathematics ,Mathematical analysis ,General Engineering ,Eigenfunction ,01 natural sciences ,Omega ,Instability ,Stability (probability) ,010305 fluids & plasmas ,010101 applied mathematics ,Piecewise linear function ,Step function ,0103 physical sciences ,Growth rate ,0101 mathematics ,Constant (mathematics) - Abstract
The stability of some simple density profiles in a vertically orientated two-dimensional porous medium is considered. The quasi-steady-state approximation is made so that the stability of the system can be approximated. As the profiles diffuse in time, the instantaneous growth rates evolve in time. For an initial step function density profile, the instantaneous growth rate was numerically found to decay like $$T^{-1/2}$$ for large times T, and the corresponding eigenfunctions scale with $$\mathrm{e}^{\omega \sqrt{T}}$$ where $$\omega $$ is a constant. For density profiles initially corresponding to a finite layer, the instantaneous growth rate eventually decayed like $$T^{-1}$$. This corresponds to an instability with algebraic growth, and the eigenfunctions scale with $$T^p$$ (where p is a constant) for large time. For a species initially linearly distributed in a finite layer, when the concentration has an increasing gradient in the downwards direction, the stability of the system was similar to that found for a uniformly distributed finite layer. However, when the concentration had a decreasing gradient in the downwards direction, the growth rates remained constant for a long period time, but eventually decayed in the same way as found in a uniformly distributed finite layer, for very large times. Numerical simulations were performed to validate the predictions made by the linear stability analysis.
- Published
- 2020
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41. Divisive gain modulation enables flexible and rapid entrainment in a neocortical microcircuit model
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Andrew J. Trevelyan, Marcus Kaiser, Christoforos A. Papasavvas, and Yujiang Wang
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Physiology ,Models, Neurological ,Neocortex ,neural entrainment ,Inhibitory postsynaptic potential ,03 medical and health sciences ,gain control ,0302 clinical medicine ,Interneurons ,Animals ,Humans ,030304 developmental biology ,Physics ,0303 health sciences ,musculoskeletal, neural, and ocular physiology ,General Neuroscience ,Neural Inhibition ,inhibitory interneurons ,Wilson–Cowan model ,Excitatory postsynaptic potential ,Neural Networks, Computer ,Nerve Net ,Entrainment (chronobiology) ,Neuroscience ,030217 neurology & neurosurgery ,Research Article ,neocortical dynamics - Abstract
Neocortical circuits exhibit a rich dynamic repertoire, and their ability to achieve entrainment (adjustment of their frequency to match the input frequency) is thought to support many cognitive functions and indicate functional flexibility. Although previous studies have explored the influence of various circuit properties on this phenomenon, the role of divisive gain modulation (or divisive inhibition) is unknown. This gain control mechanism is thought to be delivered mainly by the soma-targeting interneurons in neocortical microcircuits. In this study, we use a neural mass model of the neocortical microcircuit (extended Wilson–Cowan model) featuring both soma-targeting and dendrite-targeting interneuronal subpopulations to investigate the role of divisive gain modulation in entrainment. Our results demonstrate that the presence of divisive inhibition in the microcircuit, as delivered by the soma-targeting interneurons, enables its entrainment to a wider range of input frequencies. Divisive inhibition also promotes a faster entrainment, with the microcircuit needing less time to converge to the fully entrained state. We suggest that divisive inhibition, working alongside subtractive inhibition, allows for more adaptive oscillatory responses in neocortical circuits and, thus, supports healthy brain functioning. NEW & NOTEWORTHY We introduce a computational neocortical microcircuit model that features two inhibitory neural populations, with one providing subtractive and the other divisive inhibition to the excitatory population. We demonstrate that divisive inhibition widens the range of input frequencies to which the microcircuit can become entrained and diminishes the time needed to reach full entrainment. We suggest that divisive inhibition enables more adaptive oscillatory activity, with important implications for both normal and pathological brain function.
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- 2020
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42. The solution of the anomalous diffusion equation by a finite element method formulation based on the Caputo derivative
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R. M. Corrêa, J. A. M. Carrer, B. S. Solheid, and J. Trevelyan
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Mechanical Engineering ,Applied Mathematics ,Automotive Engineering ,General Engineering ,Aerospace Engineering ,Industrial and Manufacturing Engineering - Published
- 2022
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43. PTPRD and DCC Are Novel BACE1 Substrates Differentially Expressed in Alzheimer's Disease: A Data Mining and Bioinformatics Study
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Hannah A. Taylor, Katie J. Simmons, Eva M. Clavane, Christopher J. Trevelyan, Jane M. Brown, Lena Przemyłska, Nicole T. Watt, Laura C. Matthews, and Paul J. Meakin
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Amyloid beta-Peptides ,Organic Chemistry ,Receptor-Like Protein Tyrosine Phosphatases, Class 2 ,Computational Biology ,Alzheimer’s disease ,beta secretase 1 (BACE1) ,Netrin receptor DCC ,protein tyrosine phosphatase receptor type D (PTPRD) ,BACE1 substrates ,General Medicine ,DCC Receptor ,Catalysis ,Phosphoric Monoester Hydrolases ,Computer Science Applications ,Inorganic Chemistry ,Amyloid beta-Protein Precursor ,Alzheimer Disease ,mental disorders ,Aspartic Acid Endopeptidases ,Data Mining ,Humans ,Physical and Theoretical Chemistry ,Amyloid Precursor Protein Secretases ,Molecular Biology ,Spectroscopy - Abstract
The β-site Amyloid precursor protein Cleaving Enzyme 1 (BACE1) is an extensively studied therapeutic target for Alzheimer’s disease (AD), owing to its role in the production of neurotoxic amyloid beta (Aβ) peptides. However, despite numerous BACE1 inhibitors entering clinical trials, none have successfully improved AD pathogenesis, despite effectively lowering Aβ concentrations. This can, in part, be attributed to an incomplete understanding of BACE1, including its physiological functions and substrate specificity. We propose that BACE1 has additional important physiological functions, mediated through substrates still to be identified. Thus, to address this, we computationally analysed a list of 533 BACE1 dependent proteins, identified from the literature, for potential BACE1 substrates, and compared them against proteins differentially expressed in AD. We identified 15 novel BACE1 substrates that were specifically altered in AD. To confirm our analysis, we validated Protein tyrosine phosphatase receptor type D (PTPRD) and Netrin receptor DCC (DCC) using Western blotting. These findings shed light on the BACE1 inhibitor failings and could enable the design of substrate-specific inhibitors to target alternative BACE1 substrates. Furthermore, it gives us a greater understanding of the roles of BACE1 and its dysfunction in AD.
- Published
- 2022
44. An Isogeometric Boundary Element Formulation for Stress Concentration Problems in Couple Stress Elasticity
- Author
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G. Hattori, J. Trevelyan, and P.A. Gourgiotis
- Subjects
Mechanics of Materials ,Mechanical Engineering ,Computational Mechanics ,General Physics and Astronomy ,Computer Science Applications - Abstract
An isogeometric boundary element method (IGABEM) is developed for the analysis of two-dimensional linear and isotropic elastic bodies governed by the couple stress theory. This theory is the simplest generalised continuum theory that can eectively model size eects in solids. The couple stress fundamental solutions are explicitly derived and used to construct the boundary integral equations. A new boundary integral equation arises to obtain the moments and rotations introduced by the couple stress formulation. A new analytical solution is also derived in the present work for an elliptical opening in an innite sheet under uniaxial far-eld stress. Several stress concentration problems are examined to illustrate and validate the application of the IGABEM in couple stress elasticity. It is shown that the IGABEM scheme exhibits advantageous convergence properties in comparison with the conventional BEM for boundary value problems within the framework of couple stress elasticity.
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- 2022
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45. Rayleigh–Taylor instability of classical diffusive density profiles for miscible fluids in porous media: a linear stability analysis
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P. M. J. Trevelyan, A. De Wit, and J. Kent
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General Mathematics ,General Engineering - Published
- 2021
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46. Coagulation Factor Xa Induces Proinflammatory Responses in Cardiac Fibroblasts via Activation of Protease-Activated Receptor-1
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Frans A. van Nieuwenhoven, Sander Verheule, Ulrich Schotten, Arne van Hunnik, Chantal Munts, Neil A. Turner, Elisa D'Alessandro, Hugo ten Cate, Billy Scaf, Christopher J. Trevelyan, Henri M. H. Spronk, RS: Carim - H08 Experimental atrial fibrillation, RS: Carim - B04 Clinical thrombosis and Haemostasis, Biochemie, Fysiologie, RS: Carim - Heart, Interne Geneeskunde, MUMC+: HVC Pieken Trombose (9), MUMC+: MA Alg Interne Geneeskunde (9), MUMC+: HVC Trombosezorg (8), and RS: Carim - H06 Electro mechanics
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Gene isoform ,Adult ,QH301-705.5 ,030204 cardiovascular system & hematology ,Article ,Proinflammatory cytokine ,03 medical and health sciences ,0302 clinical medicine ,Downregulation and upregulation ,Gene expression ,Gene silencing ,FIBROSIS ,Animals ,Humans ,Receptor, PAR-1 ,Heart Atria ,Biology (General) ,Rats, Wistar ,Receptor ,cardiac fibroblasts ,Chemokine CCL2 ,030304 developmental biology ,Cell Proliferation ,Inflammation ,0303 health sciences ,Gene knockdown ,Chemistry ,Interleukin-6 ,Myocardium ,Thrombin ,General Medicine ,Fibroblasts ,PARs ,Molecular biology ,Up-Regulation ,Protease-Activated Receptor 1 ,coagulation FXa ,Factor Xa ,HEART ,Cattle - Abstract
Coagulation factor (F) Xa induces proinflammatory responses through activation of protease-activated receptors (PARs). However, the effect of FXa on cardiac fibroblasts (CFs) and the contribution of PARs in FXa-induced cellular signalling in CF has not been fully characterised. To answer these questions, human and rat CFs were incubated with FXa (or TRAP-14, PAR-1 agonist). Gene expression of pro-fibrotic and proinflammatory markers was determined by qRT-PCR after 4 and 24 h. Gene silencing of F2R (PAR-1) and F2RL1 (PAR-2) was achieved using siRNA. MCP-1 protein levels were measured by ELISA of FXa-conditioned media at 24 h. Cell proliferation was assessed after 24 h of incubation with FXa ± SCH79797 (PAR-1 antagonist). In rat CFs, FXa induced upregulation of Ccl2 (MCP-1, >, 30-fold at 4 h in atrial and ventricular CF) and Il6 (IL-6, ±7-fold at 4 h in ventricular CF). Increased MCP-1 protein levels were detected in FXa-conditioned media at 24 h. In human CF, FXa upregulated the gene expression of CCL2 (>, 3-fold) and IL6 (>, 4-fold) at 4 h. Silencing of F2R (PAR-1 gene), but not F2RL1 (PAR-2 gene), downregulated this effect. Selective activation of PAR-1 by TRAP-14 increased CCL2 and IL6 gene expression, this was prevented by F2R (PAR-1 gene) knockdown. Moreover, SCH79797 decreased FXa-induced proliferation after 24 h. In conclusion, our study shows that FXa induces overexpression of proinflammatory genes in human CFs via PAR-1, which was found to be the most abundant PARs isoform in this cell type.
- Published
- 2021
47. Altered synaptic connectivity in anin vitrohuman model of STXBP1 encephalopathy
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Faye McLeod, Rhys H. Thomas, Gavin J. Clowry, Anna Dimtsi, Andrew J. Trevelyan, and David Lewis-Smith
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Glutamatergic ,medicine.anatomical_structure ,Cortex (anatomy) ,Subplate ,Encephalopathy ,medicine ,STXBP1 ,Human brain ,Biology ,medicine.disease ,Haploinsufficiency ,Marginal zone ,Neuroscience - Abstract
Early infantile developmental and epileptic encephalopathies are devastating conditions, generally of genetic origin, but the pathological mechanisms often remain obscure. A major obstacle in this field of research is the difficulty of studying cortical brain development in humans,in utero. To address this, we established anin vitroassay to study the impact of gene variants on the developing human brain, using living organotypic cultures of the human subplate and neighbouring cortical regions, prepared from ethically sourced, 14-17 post conception week brain tissue (www.hdbr.org). We were able to maintain cultures for several months, during which time, the gross anatomical structures of the cortical plate, subplate and marginal zone persisted, while neurons continued to develop morphologically, and form new synaptic networks. This preparation thus permits the study of genetic manipulations, and their downstream effects upon an intact developing human cortical network. We focused upon STXBP1 haploinsufficiency, which is among the most common genetic causes of developmental and epileptic encephalopathy. This was induced using shRNA interference, leading to impaired synaptic function and a drop in the number of glutamatergic synapses. We thereby provide a critical proof-of-principle for how to study the impact of any gene of interest on the development of the human cortex.
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- 2021
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48. PV-specific loss of the transcriptional coactivator PGC-1α slows down the evolution of epileptic activity in an acute ictogenic model
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Darren Walsh, R. Ryley Parrish, Connie Mackenzie-Gray-Scott, Rita M. Cowell, Andrew J. Trevelyan, and Claudia Racca
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chemistry.chemical_classification ,0303 health sciences ,biology ,Interneuron ,Peroxisome proliferator-activated receptor ,SYT2 ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,chemistry ,Transcriptional Coactivator ,Coactivator ,biology.protein ,medicine ,GABAergic ,Latency (engineering) ,Neuroscience ,030217 neurology & neurosurgery ,Parvalbumin ,030304 developmental biology - Abstract
The transcriptional coactivator, PGC-1α (peroxisome proliferator activated receptor gamma coactivator 1α), plays a key role coordinating energy requirement within cells. Its importance is reflected in the growing number of psychiatric and neurological conditions that have been associated with reduced PGC-1α levels. In cortical networks, PGC-1α is required for the induction of parvalbumin (PV) expression in interneurons, and PGC-1α deficiency affects synchronous GABAergic release. It is unknown, however, how this affects cortical excitability. We show here that knocking down PGC-1α specifically in the PV-expressing cells (PGC-1αPV-/-), blocks the activity-dependent regulation of the synaptic proteins, SYT2 and CPLX1. More surprisingly, this cell-class specific knock-out of PGC-1α appears to have a novel anti-epileptic effect, as assayed in brain slices bathed in 0 Mg2+ media. The rate of pre-ictal discharges developed approximately equivalently in wild-type and PGC-1αPV-/- brain slices, but the intensity of these discharges was lower in PGC-1αPV-/- slices, as evident from the reduced power in the gamma range and reduced firing rates in both PV interneurons and pyramidal cells during these discharges. Reflecting this reduced intensity in the pre-ictal discharges, the PGC-1αPV-/- brain slices experienced many more discharges before transitioning into a seizure-like event. Consequently, there was a large increase in the latency to the first seizure-like event in brain slices lacking PGC-1α in PV interneurons. We conclude that knocking down PGC-1α limits the range of PV interneuron firing, and this slows the pathophysiological escalation during ictogenesis.
- Published
- 2021
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49. Genetically encoded sensors for Chloride concentration
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Claudia Lodovichi, Gian Michele Ratto, Andrew J. Trevelyan, and Daniele Arosio
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Neurons ,Chlorides ,General Neuroscience ,Brain ,Hydrogen-Ion Concentration ,2-photon ,Neuronal excitability ,Chloride imaging ,Fluorescent proteins ,Functional optical imaging - Abstract
Insights into chloride regulation in neurons have come slowly, but they are likely to be critical for our understanding of how the brain works. The reason is that the intracellular Cl- level ([Cl-]i) is the key determinant of synaptic inhibitory function, and this in turn dictates all manner of neuronal network function. The true impact on the network will only be apparent, however, if Cl- is measured at many locations at once (multiple neurons, and also across the subcellular compartments of single neurons), which realistically, can only be achieved using imaging. The development of genetically-encoded anion biosensors (GABs) brings the additional benefit that Cl- imaging may be done in identified cell-classes and hopefully in subcellular compartments. Here, we describe the historical background and motivation behind the development of these sensors and how they have been used so far. There are, however, still major limitations for their use, the most important being the fact that all GABs are sensitive to both pH and Cl-. Disambiguating the two signals has proved a major challenge, but there are potential solutions; notable among these is ClopHensor, which has now been developed for in vivo measurements of both ion species. We also speculate on how these biosensors may yet be improved, and how this could advance our understanding of Cl- regulation and its impact on brain function.
- Published
- 2021
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50. Diurnal variation in neuronal chloride levels and seizure susceptibility, in neocortex, reflecting changes in activity of chloride-cation-cotransporters
- Author
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Laura Alberio, Rob Graham, Enrico Pracucci, Silvia Landi, Andrew J. Trevelyan, Vinoshene Pillai, Jinwei Zhang, Luciano Saieva, Darren Walsh, Olga Cozzolino, Gabriele Nardi, and Gian Michele Ratto
- Subjects
Neocortex ,medicine.anatomical_structure ,Chemistry ,Synaptic plasticity ,medicine ,Biophysics ,Premovement neuronal activity ,GABAergic ,Circadian rhythm ,Inhibitory postsynaptic potential ,Cotransporter ,Chloride ,medicine.drug - Abstract
SummaryThe main inhibitory synaptic currents, gated by gamma-aminobutyric acid (GABA), are mediated by Cl--conducting channels1–3, and are therefore sensitive to changes in the chloride electrochemical gradient. GABAergic activity dictates the neuronal firing range4,5 and timing6–9, which in turn influences the rhythms of the brain, synaptic plasticity, and flow of information in neuronal networks7,10–12. The intracellular chloride concentration [Cl-]i is, therefore, ideally placed to be a regulator of neuronal activity. Chloride levels have been thought to be stable in adult cortical networks, except when associated with pathological activation13–16. Here, we used 2-photon LSSmClopHensor imaging, in anaesthetized young adult mice13, to show that [Cl-] inside pyramidal cells shows a physiological diurnal rhythm, with an approximately 1.8-fold range, equating to an ~15mV positive shift in ECl at times when mice are typically awake (midnight), relative to when they are usually asleep (midday). This change of [Cl-]i alters the stability of cortical networks, as demonstrated by a greater than 3-fold longer latency to seizures induced by 4-aminopyridine at midday, compared to midnight. Importantly, both [Cl-]i and latency to seizure, in night-time experiments, were shifted in line with day-time measures, by inhibition of NKCC1. The redistribution of [Cl-]i reflects diurnal changes in surface expression and phosphorylation states of the cation-chloride-co-transporters, KCC2 and NKCC1, leading to a greatly reduced chloride-extrusion capacity at night (awake period). Our data demonstrate a means by which changes in the biochemical state of neurons are transduced into altered brain states.
- Published
- 2021
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