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CX-ASAP is a new open-source software project designed to greatly reduce the time required to analyse crystallographic data collected under varying conditions. Scripted in Python3, CX-ASAP can automatically refine, finalize and analyse data collections with wide-ranging temperatures, pressures etc. This is achieved using a reference structure, allowing for quick identification of problems, phase changes and even model comparison. The modular design means that new features and customized scripts can be easily added, tailoring the capabilities to the specific needs of the user. It is envisioned that CX-ASAP will help to close the growing gap between fast collection times and slow data finalization.

As complex materials are widely used in emerging technologies for environmental and energy applications, it is important to be able to quantify their stimuli-response behaviors. Light is a useful stimulus to modulate multifunctional electrochemical, magnetic, optical, and structural properties in metal–organic frameworks (MOFs); however, the underlying mechanisms and kinetics of light-induced structural changes are not well understood. Herein, a double [2 + 2] photocyclization in photoactive [Cd2(stil)2(Py2TTF)2] (stil2– = 4,4′-stilbenedicarboxylic acid, Py2TTF = 2,6-bis(4′-pyridyl)-tetrathiafulvalene) offers a powerful platform to quantitatively probe solid-state photocyclization kinetics. Variable-temperature Raman spectroscopy revealed a nonlinear temperature dependence of these parameters, which could be analyzed using the Johnson–Mehl–Avrami–Kolmogorov (JMAK) kinetic model to yield a maximum rate observed between 0 °C and 20 °C of approximately 0.172 s–1. These results offer the first example of the quantification of the photocyclization kinetics in a MOF. Density functional theory (DFT) calculations support a singlet reaction mechanism for the double [2 + 2] photocyclization, which is facilitated by the cofacial alignment of Py2TTF ligands. Establishing mechanistic and kinetic models that can be applied to multistimuli-responsive materials provides a powerful platform for their future design for applications in sensing, switching, and molecular separations.

A detailed study of the two-dimensional (2-D) Hofmann-like framework [Fe(furpy)

We report here a triply interlocked cage with the ability to encapsulate planar guests in aqueous medium. This property was then employed to efficiently separate planar and non-planar aromatic hydrocarbons by aqueous extraction.

The use of an angular ligand drives the formation of an irregular Hofmann framework whereby 6-coordinate and rare 5-coordinate FeII species co-exist – the 6-coordinate species show a spin-crossover transition.

Both sterics and metal ion radius influences the outcomes of self-assembly reactions.

Coordination polymers exhibiting mechanical flexibility including elastic or plastic bending are rare. Here, we report an example of a mechanically flexible one-dimensional coordination polymer that shows elastic bending. Quantitative insights on the inter and intra-chain bonding as well as structural flexibility from a combination of techniques including variable temperature single crystal X-ray diffraction (XRD), high-pressure crystallography (ambient─15 GPa), synchrotron micro-XRD mapping of the bent crystal, and high-resolution synchrotron X-ray charge density analysis show that the helical coordination polymer behaves like a spring when subjected to external stimuli. Changes that occur with the variation of temperature, pressure, or bending, however, result in very different mechanistic changes. The exceptional coordination sphere flexibility rendered by the presence of Jahn-Teller distorted coordination bonds leads to the flexibility of the polymer.

Organic materials are promising candidates for the development of efficient sensors for many medicinal and materials science applications. Single crystals of a small molecule, 4-trifluoromethyl phenyl isothiocyanate (4CFNCS), exhibit plastic deformation when bent, twisted, or coiled. Synchrotron micro-focus X-ray diffraction mapping of the bent region of the crystal confirms the mechanism of deformation. The crystals are incorporated into a flexible piezoresistive sensor using a composite constituting PEDOT: PSS/4CFNCS, which shows an impressive performance at high-pressure ranges (sensitivity 0.08 kPa

Binding hydrophilic anions such as sulfate in water is a significant academic challenge, in particular for neutral receptors. To achieve this, typically a large molecular receptor is designed that wraps around a bound anion in a hydrophobic microenvironment. Such receptors require multi-step synthesis and often display selectivity towards hydrophobic anions such as iodide. We here report the one-pot synthesis of a [2.2.2]urea cryptand (cage) and its ability to bind sulfate in water with sub-millimolar affinity achievable by incorporation into micelles. Unlike existing neutral receptors, the cage has >10-fold selectivity for sulfate against hydrophobic anions even in pure water. The cage displays rare slow-exchange NMR responses to divalent anions in DMSO-water allowing for simultaneous analysis of multiple divalent anions in water analogous to an ion chromatography instrument. Our results demonstrate the pre-organization of strong directional NH hydrogen bond donors in a cage scaffold as a synthetically less-demanding, yet effective approach to achieving selective binding of hydrophilic anions in water.

The achievement of targeted properties in spin crossover (SCO) materials is complicated by often unpredictable cooperative interactions in the solid state. Herein, we report a dinuclear Fe(II) triple helicate 1, which is a rare example of a SCO material possessing two distinct magnetic behaviors that depend upon the thermal scan rate. Desolvated 1 was seen to undergo spin transition (ST) which was complete following slow cooling (1 K min-1), but incomplete ST (corresponding to 50% conversion) on fast cooling (10 K min-1). The incomplete ST observed in the latter case was accompanied by a higher temperature onset of ST, differing from TIESST (Temperature-Induced Excited Spin-State Trapping) materials. The two SCO pathways have been shown to arise from the interconversion between two structural phases (a and b), with both phases having associated high spin (HS) and low spin (LS) states. SCXRD (Single Crystal X-ray Diffraction) experiments using controlled cooling rates and a synchrotron light source enabled short collection times (2-3 minutes per dataset) which has enabled the identification of a mechanism by which the slow-cooled material may fully relax. In contrast, fast-cooled materials exhibit disordered arrangements of multiple structural phases, which has in turn revealed that the [HS-LS] ↔ [LS-HS] equilibria are controllable in the solid by varying the scan rate. Such behavior has been previously observed in solution studies, but its control in solids has not been reported up to now. This study demonstrates how intermolecular cooperativity can allow multiple distinct magnetic behaviors, and provides some insight into how [HS-LS] ↔ [LS-HS] equilibria can be controlled in the solid state, which may assist in the design of next-generation logic and signaling devices.

A range of morphologically distinct metallosupramolecular Cu(II) and Pd(II) complexes has been constructed, based on the tritopic ligand 1,1',1″-(benzene-1,3,5-triyl)tris(4,4-dimethylpentane-1,3-dione) (H). By control of the reaction conditions, it is possible to generate distinct coordination assemblies possessing either macrocyclic or polymeric structures and more importantly distinct activity in catalysis of the Suzuki-Miyaura cross-coupling.

A spin-crossover (SCO) active dinuclear Fe(II) triple helicate of the form [Fe] was combined with additional supramolecular components in order to manipulate the interhelical separation and steric congestion and to study the magneto-structural effects on the ensuing composite materials. A more separated array of SCO units produced more extensive spin-transitions, while a tightly arranged lattice environment stabilized the low-spin state. This study highlights the important interplay between crystal packing, intermolecualr interactions, and the magentic behavior of SCO materials.

In a recent study, Dey et al.1 propose a mechanism of elastic bending in co-crystals of caffeine, 4-chloro-3-nitrobenzoic acid and methanol (1) in which mechanical interlocking is proposed to allow for the reversible flexibility observed. We have now determined the mechanism to atomic resolution using micro-focused synchrotron radiation,2 which is different to that previously reported. When subjected to strain the inter-molecular distances change and hydrogen-bonded dimers rotate over two orthogonal directions to allow the compression and expansion producing flexibility.

We probe, here, a family of 2D Hofmann-type frameworks, [FeII(Pd(CN)4)(bztrzX)2]·nH2O [X·nH2O; X = F, Cl, Br; n = 1 (X = Cl, Br) and 3 (X = F); bztrzX = (E)-1-(2-Xphen-1-yl)-N-(4H-1,2,4-triazol-4-yl)methanimine], with halogen-appended ligands. In all cases, there are two crystallographically distinct FeII sites, ({Fe1-Fe2}), driven by the presence of a range of host-host and host-guest interactions. We find that lattice modification through X variation influences the elastic coupling between the FeII sites, the emergence of ferroelastic or antiferroelastic interactions between these sites, and the relative spin-state stabilization/destabilization at each site. In Cl·H2O, the FeII sites show strong elastic coupling, as evidenced by both FeII sites undergoing a spin transition in a single cooperative step, as driven by the volume strain over the high-spin (HS)-to-low-spin (LS) transition. The FeII sites in F·3H2O are also elastically coupled; however, the change of the X atom characteristics and increased guest molecules in the pores result in an antiferroelastic interaction characteristic between Fe1 and Fe2 and a resultant two-step spin-state transition. The change of the X atom to Br in Br·H2O results in the FeII sites being decoupled due to halogen atom steric bulk, resulting in the independent spin-state transition of Fe1 and Fe2 sites and a two-step spin-state transition pathway. Uniquely, all three possible spin-state transition pathways of a two-site switching system are observed in this family [(1) {HS-HS} ↔ {HS-LS} ↔ {LS-LS} for Br·H2O, (2) {HS-HS} ↔ {LS-HS} ↔ {LS-LS} for F·3H2O, and (3) {HS-HS} ↔ {LS-LS} for Cl·H2O for {Fe1-Fe2}]. Overall, these findings broadly support recent theoretical models but highlight that additional structural and topological complexities are needed to form a holistic picture of the drivers of elastic frustration.

Foremost, practical applications of spin-crossover (SCO) materials require control of the nature of the spin-state coupling. In existing SCO materials, there is a single, well-defined dimensionality relevant to the switching behavior. A new material, consisting of 1,2,4-triazole-based trimers coordinated into 1D chains by [Au(CN)] and spaced by anions and exchangeable guests, underwent SCO defined by elastic coupling across multiple dimensional hierarchies. Detailed structural, vibrational, and theoretical studies conclusively confirmed that intra-trimer coupling was an order of magnitude greater than the intramolecular coupling, which was an order of magnitude greater than intermolecular coupling. As such, a clear hierarchy on the nature of elastic coupling in SCO materials was ascertained for the first time, which is a necessary step for the technological development of molecular switching materials.

It has been previously proposed that pyridines can activate PhICl2 by displacing a chloride and forming the [PhI(Pyr)(Cl)]+ cation as a reactive intermediate. Here we show that pyridine does not displace chloride, but rather forms a weak complex with the iodine via halogen bonding along the C-I bond axis. This interaction is interrogated by NMR, structural, charge density, and theoretical investigations, which all indicate that pyridine does not activate PhICl2 as proposed.

While the first report of molecular crystals that could bend without breaking was well over a decade ago, the development of suitable characterisation tools remains a priority. Due to the broad reaching applications of these materials in advanced technologies, it is important to develop both mechanical and mechanistic understanding. Micro-focused mapping experiments were designed with the intent of bridging the gap between the measurement of mechanical properties and molecular-scale structural understanding. Herein, we describe a methodology for determining the mechanisms of deformation in flexible crystals with atomic precision and provide examples where it has been implemented. Although micro-focused mapping experiments have potential for application in the determination of mechanisms of flexibility, great care must be taken during both experimental design and data analysis.

A study on the potential activating role of pyridine in the electrophilic chlorination of anisole by PhICl2 has led to the discovery that soluble sources of chloride ions activate PhICl2 in the reaction at catalytic loadings, greatly increasing the rate of chlorination. It is further shown that presence of chloride increases the rate of decomposition of PhICl2 into PhI and Cl2. The specific mechanism by which chloride induces electrophilic chlorination and decomposition of PhICl2 remains an open question.

The synthesis and crystal structures of a series of Ln(III) (Ln = Gd, Nd, Yb as well as Y) complexes of a bis-β-diketone ligand incorporating a 1,3-substituted phenyl ring between its two β-diketone domains (1,1′-(1,3-phenylene)bis(4,4-dimethylpentane-1,3-dione), H2L1) is reported. The crystal structures show the complexes are seven coordinate in the solid state with the general formula [Ln2L13(solvent)2]. The photophysical properties of the complexes were explored in both solution and the solid state, which show an increase in coordination number in solution.

Nature builds simple molecules into highly complex assemblies, which are involved in all fundamental processes of life. Some of the most intriguing biological assemblies are those that can be precisely reconfigured to achieve different functions using the same building blocks. Understanding the reconfiguration of synthetic self-assembled systems will allow us to better understand the complexity of proteins and design useful artificial chemical systems. Here we have prepared a relatively simple system in which two distinct self-assembled structures, a [Fe2L3]4+ helicate and a [Fe4L6]8+ cage that are formed from the same precursors, coexist at equilibrium. We have measured the rates of interconversion of these two species and propose a mechanism for the transformation.

ion of a pyridine ligand from Weiss’ reagent ([PhI(Pyr)2]2+) using BF3-Et2O was found to activate Weiss’ reagent towards electrophilic aromatic substitution reactions. The activated species can be isolated when 4-DMAP is used as the pyridine ligand and was determined to be [PhI(4-DMAP)]2+ in solution. The isolated cation was reactive in electrophilic aromatic substitution reactions towards mesitylene, xylene and toluene that Weiss’ reagent itself does not react with.

Molecular machines and switches, supramolecular chemistry, and crystal engineering are vibrant areas of research. Organic chemists have devoted considerable efforts to develop a wide range of complex functional building blocks with enhanced properties and chemically responsive properties to advance these fields. However, the rational design of topologically versatile and chemically responsive building blocks in the main group arena is largely unexplored. Within this context, we have rationally designed a series of NH-bridged acyclic dimeric cyclodiphosphazanes species, [(μ-NH){PE(μ-NtBu)2PE(NHtBu)}2] (E= O and S), displaying bimodal bifurcated R21(8) and trifurcated R31(8,8) hydrogen bonding motifs. The reported species reversibly switch their topological arrangement in the presence of anions. Our results underscore these species as versatile building blocks for molecular machines and switches, as well as supramolecular chemistry and crystal engineering based on cyclophosphazane frameworks.

Anthracene crude oil is a common source of phenanthrene for its industrial use. The isolation of phenanthrene from this source is a challenging task due to very similar physical properties to its isomer anthracene. We report here a water-soluble Pd(II) molecular boat (

Preferential formation of cis- or trans-palladium(II) complexes controlled via the exocyclic binding sites embedded in dithiamacrocycles (L1 = -S(CH2)2S-; L2 = -S(CH2)2O(CH2)2S-) is reported. From the reaction with K2PdCl4, the shorter sulfur-to-sulfur separation in L1 preferentially leads to the formation of cis-[Pd(L1)Cl2] (1), while L2, incorporating a larger sulfur-to-sulfur separation, coordinates in a trans fashion to form a cyclic dimer, trans-[Pd2(L2)2Cl4] (2). The observed results illustrate the possibility for the controlled formation of cis/trans square-planar complexes through binding-site design. When palladium(II) acetate was substituted for K2PdCl4 in the above reaction, L1 gave no product, while L2 resulted in the formation of a unique tripalladium(II) complex, [Pd3(L2)(CH3C(═N)OC(═N)CH3)(CH3COO)4] (3), in which three PdII atoms are linked by acetimidic anhydride, CH3C(═N)OC(═N)CH3, derived from the acetonitrile solvent employed. In the 1H NMR spectrum for 3, specific methylene signals for methylene protons adjacent to S donors exhibit large complexation-induced splitting of the geminal proton signals into axial and equatorial proton peaks, thus indicating magnetically nonequivalent geminal protons that reflect the restricted conformation of the metallabicycle.

A two-dimensional molecular square (MC) was obtained by the self-assembly of a bis(tetrazole) linker, 4,4'-bis(1H-tetrazol-5-yl)-1,1'-biphenyl (H2L1), with a square-planar metal acceptor M [M = (tmeda)Pd(NO3)2, where tmeda = N,N,N',N'-tetramethylethane-1,2-diamine] in dimethyl sulfoxide (DMSO) followed by crystallization. The uncommon 2,3-binding mode through N atoms of the tetrazole rings in this assembly leads to the formation of an octanuclear molecular square. The molecular square MC [Pd8(L1)4(NO3)8] is unstable in DMSO and slowly converts to a dynamic mixture of a 3D tetrahedral cage T1 [Pd12(L1)6(NO3)12] and the macrocycle MC. A tetrahedral cage (T1) is formed by the usual 1,3-binding mode of the tetrazole rings. However, self-assembly of the T1 [Pd12(L1)6(PF6)12] was possible to access in the pure form in a less polar solvent like acetonitrile. The pure T1 [Pd12(L1)6(PF6)12] also converts to a mixture of T1 and MC in DMSO. Interestingly, when a tris(tetrazole) linker, tris(4-(1H-tetrazol-5-yl)phenyl)amine (H3L2), was treated with the acceptor M, it produced a tetrahedral nanocage T2 [Pd12(L2)4(NO3)12] through 1,3-binding mode of the tetrazole rings without any trace of an octahedral cage through 2,3-binding mode of the tetrazole moieties.

The structural changes that occur in the strongly hysteretic spin-crossover complex [Fe(qsal-I)2]NTf2 (1) have been determined for the full width of the hysteresis. In the cooling mode, structural ...

Two Co L tetrahedral cages prepared from similar building blocks showed contrasting host-guest properties. One cage did not bind guests, whereas the second encapsulated a series of anions, due to electronic and geometric effects. When the building blocks of both cages were present during self-assembly, a library of five Co L L cages was formed in a statistical ratio in the absence of guests. Upon incorporation of anions able to interact preferentially with some library members, the products obtained were redistributed in favor of the best anion binders. To quantify the magnitudes of these templation effects, ESI-MS was used to gauge the effect of each template upon library redistribution.

Encasing the classic spin-crossover (SCO) complex cation [Co(terpy)2]2+ in different anionic supramolecular frameworks modulates its SCO behavior, tuning both its T1/2 (shift of up to 200 K) and th...

Two new oxygenated terpenes (1 and 2) have been characterized from the Australian nudibranch Goniobranchus coi. Broadened 1H NMR signals, together with the absence of individual carbon NMR signals, complicated analysis of 5,9-epoxydendrillolide A (1); increasing the temperature to 323 K revealed the missing NMR signals. Low-temperature 1H NMR experiments provided an activation barrier of ∼15 kcal mol–1 and, together with DFT calculations, supported interconversion of a twist chair conformer with two different chair conformers. X-ray crystallographic analysis coupled with biosynthetic reasoning suggested a (5R, 8S, 9R, 13R, 14R, 15R, 16R) configuration. Ketone 2 demonstrated similar dynamic conformational processes to 1.

Gaining a fundamental understanding of charge transfer mechanisms in three-dimensional Metal–Organic Frameworks (MOFs) is crucial to the development of electroactive and conductive porous materials. These materials have potential in applications in porous conductors, electrocatalysts and energy storage devices; however the structure–property relationships pertaining to charge transfer and its quantification are relatively poorly understood. Here, the cofacial Cd(II)-based MOF [Cd(BPPTzTz)(tdc)]·2DMF (where BPPTzTz = 2,5-bis(4-(pyridin-4-yl)phenyl)thiazolo[5,4-d]thiazole, tdc2− = 2,5-thiophene dicarboxylate) exhibits Intervalence Charge Transfer (IVCT) within its three-dimensional structure by virtue of the close, cofacial stacking of its redox-active BPPTzTz ligands. The mixed-valence and IVCT properties are characterised using a combined electrochemical, spectroelectrochemical and computational approach. Single crystal electronic absorption spectroscopy was employed to obtain the solid-state extinction coefficient, enabling the application of Marcus–Hush theory. The electronic coupling constant, Hab, of 145 cm−1 was consistent with the localised mixed-valence properties of both this framework and analogous systems that use alternative methods to obtain the Hab parameter. This work demonstrates the first report of the successful characterisation of IVCT in a MOF material using single crystal electronic absorption spectroscopy and serves as an attractive alternative to more complex methods due to its simplicity and applicability.

Two of the most successful strategies for the preparation of three-dimensional coordination polymers and MOFs are reticular synthesis and pillaring. Here we present a new approach which combines aspects of both of these by employing a heterofunctional dicarboxylic and dipyridyl ligand, 2,5-di(pyridin-4-yl)terephthalic acid (H2L). The reaction of H2L with zinc(II) produces a non-interpenetrated 3D coordination polymer [ZnL(H2O)]n.

ion of a pyridine ligand from Weiss' reagent ([PhI(Pyr)

Extracts of the mantle and viscera of the Indo-Pacific nudibranchs Goniobranchus aureopurpureus and Goniobranchus sp. 1 afforded 11 new diterpenoids (1–11), all of which possess a tetracyclic spongian-16-one scaffold with extensive oxidation at C-6, C-7, C-11, C-12, C-13, and/or C-20. The structures and relative configuration were investigated by NMR experiments, while X-ray crystallography provided the absolute configuration of 1, including a 2′S configuration for the 2-methylbutanoate substituent located at C-7. Dissection of animal tissue revealed that the mantle and viscera tissues differed in their metabolite composition with diterpenes 1–11 present in the mantle tissue of the two nudibranch species.

The discovery of molecular single crystals that display interesting elastic behaviour has generated excitement regarding their potential applications as it has upended the common perception of crystals as brittle objects. In order to design new functional materials based on molecular crystals, a comprehensive understanding of how these materials respond to deformation on a molecular-level is required. An introduction to the underlying mechanical theory and how it may be applied to single crystals is provided, along with a comprehensive discussion on how these mechanical properties can be characterised. While this field has already presented a large number of elastically flexible crystals, there is a lack of detailed mechanical characterisation data and some contention regarding the atomic-scale mechanism of elasticity. Due to the discrepancies and contradictions between theories proposed in the literature, it is not yet understood why some crystals are elastic while others shatter under applied force. To dispel ambiguity and guide future research, a set of criteria are proposed to define an elastically flexible crystal, so that these materials may find applications among future technologies.

A study on the potential activating role of pyridine in the electrophilic chlorination of anisole by PhICl2 has led to the discovery that soluble sources of chloride ions activate PhICl2 in the reaction at catalytic loadings, greatly increasing the rate of chlorination. It is further shown that presence of chloride increases the rate of decomposition of PhICl2 into PhI and Cl2. The specific mechanism by which chloride induces electrophilic chlorination and decomposition of PhICl2 remains an open question.