1. Development of SSR markers based on the head transcriptome of Pantala flavescens (Fabricius, 1798) (Odonata: Libellulidae)
- Author
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L.Z. Cao and Y.G. Yuan
- Subjects
0106 biological sciences ,Genetics ,Genetic diversity ,biology ,Pantala flavescens ,Amplicon ,Dragonfly ,biology.organism_classification ,Odonata ,010603 evolutionary biology ,01 natural sciences ,010602 entomology ,Insect Science ,Complementary DNA ,Microsatellite ,Ecology, Evolution, Behavior and Systematics ,Libellulidae - Abstract
Pantala flavescens (Fabricius, 1798) is one of the most common species of dragonflies and has been found throughout from tropic to temperate zones worldwide. In this study, RNA-seq of P. flavescens was carried out through Illumina high-throughput sequencing technology. Approximately 37,868 unigenes and 47,188 transcripts were obtained. The average length of the assembled unigenes was 908.59 bp. We identified 1442 cDNA simple sequence repeats (SSRs) among the 37,868 unigenes, with 864 (59.91%) di-nucleotide repeats, 537 (37.32%) tri-nucleotide repeats, 32 (2.22%) complex-nucleotide repeats, and 9 (0.62%) with tetra-nucleotide repeats. Sixty microsatellite molecular markers were randomly selected to test amplification. Of the 60 markers, 32 (53.33%) produced clear amplicons of the expected size, 10 (16.67%) amplified nonspecific products, and 18 (30%) failed to amplify the DNA products. In order to assess their applicability, genetic diversity of the 32 SSR loci was tested in 32 individuals from Nanchang in...
- Published
- 2018