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Introduction: Current eggplant variety breeding is still mainly based on conventional methods, and there remains a lack of effective molecular breeding systems for complex traits controlled by multiple genes, such as yield and quality. To accelerate the research progress of eggplant genetics and molecular breeding, it is necessary to implement a genome-based breeding strategy. Methods: Therefore, in this study, a SNP array containing 50K liquid-phase probes was designed on the basis of the resequencing data of 577 eggplants. Results: The developed 50K liquid-phase probes were used to perform targeted capture sequencing on 12 eggplant lines, and the efficiency of probe capture exceeded 99.25%. Principal component, phylogenetic, and population structure analyses divided the 577 eggplants into 7 subgroups, and statistical analysis was performed on the fruit shape and color of the materials in the different subgroups. Further analysis of the geographical distribution of 428 Chinese eggplant materials revealed that the geographical regions of different subgroups were similar. The 50K SNP liquid-phase array was used to perform bulked- segregant analysis combined with whole-genome resequencing (BSA-seq) of fruit shape in the F2 population, which consisted of 1435 lines constructed with E421 as the maternal parent and 145 as the paternal parent. The BSA-seq data were located in the 78444173−84449348 interval on chromosome 3, with a size of 6 Mb, which was narrowed to 712.6 kb through fine mapping. Further sequence alignment and expression analysis revealed SmIQD14 as a candidate gene controlling eggplant fruit shape. The 50K SNP liquid-phase array can be widely used in future eggplant molecular breeding research. [ABSTRACT FROM AUTHOR]

Introduction: Current eggplant variety breeding is still mainly based on conventional methods, and there remains a lack of effective molecular breeding systems for complex traits controlled by multiple genes, such as yield and quality. To accelerate the research progress of eggplant genetics and molecular breeding, it is necessary to implement a genome-based breeding strategy. Methods: Therefore, in this study, a SNP array containing 50K liquid-phase probes was designed on the basis of the resequencing data of 577 eggplants. Results: The developed 50K liquid-phase probes were used to perform targeted capture sequencing on 12 eggplant lines, and the efficiency of probe capture exceeded 99.25%. Principal component, phylogenetic, and population structure analyses divided the 577 eggplants into 7 subgroups, and statistical analysis was performed on the fruit shape and color of the materials in the different subgroups. Further analysis of the geographical distribution of 428 Chinese eggplant materials revealed that the geographical regions of different subgroups were similar. The 50K SNP liquid-phase array was used to perform bulked- segregant analysis combined with whole-genome resequencing (BSA-seq) of fruit shape in the F2 population, which consisted of 1435 lines constructed with E421 as the maternal parent and 145 as the paternal parent. The BSA-seq data were located in the 78444173−84449348 interval on chromosome 3, with a size of 6 Mb, which was narrowed to 712.6 kb through fine mapping. Further sequence alignment and expression analysis revealed SmIQD14 as a candidate gene controlling eggplant fruit shape. The 50K SNP liquid-phase array can be widely used in future eggplant molecular breeding research. [ABSTRACT FROM AUTHOR]

Eggplant (Solanum melongena L.) is a widely cultivated vegetable belonging to the family Solanaceae. However, it is highly susceptible to yield reduction owing to soil-borne diseases caused by bacterial wilt (BW) (Ralstonia solanacearum L.). Therefore, understanding the mechanism of bacterial wilt resistance in eggplant is helpful for genetic improvement to create cultivars with strong bacterial wilt resistance. In this study, we conducted a comparative analysis of transcriptomics from eggplant varieties of different genotypes following infection with R. solanacearum. Transcriptome analysis revealed the majority of differentially expressed genes (DEGs) primarily implicated in pathways such as the MAPK signaling pathway, plant hormone signal transduction, and plant–pathogen interactions, as determined using Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis. The expression profiles of hormone pathway genes suggest that salicylic acid, ethylene, and jasmonic acid may play significant roles in conferring bacterial wilt resistance. DEGs from the leaves, roots, and stems were partitioned into 14 modules. Among these, the black module exhibited the strongest correlation with target traits and 16 hub genes were identified using gene co-expression network analysis. Subsequently, seven hub genes were selected for validation using RT-qPCR, and the results were consistent with the RNA-seq data. Notably, upon gene annotation, a significant proportion of the hub genes were annotated as heat shock proteins (HSPs) or heat shock transcription factors (HSFs). These findings offer valuable insights for advancing research on the molecular genetic mechanisms through which HSPs/HSFs contribute to bacterial wilt resistance in eggplant. [ABSTRACT FROM AUTHOR]

Low temperature storage is widely used for storage and transportation of fruits and vegetables after harvest. As a cold-sensitive fruit vegetable, post-harvest solanaceous vegetables and fruits are susceptible to chilling injury during low temperature storage, which reduces its sensory quality and edible quality and shortens its storage period, thus leading to huge economic losses. Therefore, it is an essential to clarify the occurrence mechanism of chilling injury caused by low temperature storage in solanaceous vegetables and fruits, and to propose corresponding prevention and control measures for chilling injury. In recent years, a series of progress has been made in the research on chilling injury prevention and control and low temperature stress tolerance of solanaceous vegetables and fruits. This paper describes the chilling injury symptoms of postharvest solanaceous vegetables and fruits, clarifies the physiological and biochemical mechanisms in the chilling injury process, the molecular mechanisms, and prevention and control measures, and summarizes the latest research advancements on chilling injury and chilling tolerance regulation of solanaceous vegetables and fruits, which can provide valuable references for low temperature storage and chilling injury prevention and control measures of solanaceous vegetables and fruits. [ABSTRACT FROM AUTHOR]

CCT family genes play crucial roles in photoperiodic flowering and environmental stress response; however, there are limited reports in Solanum species with considerable edible and medicinal value. In this study, we conducted genome-wide characterization and expression profiling analysis of the CCT gene family in two Solanum species: tomato (Solanum lycopersicum L.) and eggplant (Solanum melongena L.). A total of 27 SlCCT and 29 SmCCT genes were identified in the tomato and eggplant genomes, respectively. Phylogenetic analysis showed that the CCT gene family could be divided into six subgroups (COL I, COL II, COL III, PRR, CMF I, and CMF II) in Oryza sativa and Arabidopsis thaliana. The similarity in the distribution of exon–intron structures and conserved motifs within the same subgroup indicated the conservation of SlCCT and SmCCT genes during evolution. Intraspecies collinearity analysis revealed that six pairs of SlCCT genes and seven pairs of SmCCT genes showed collinear relationships, suggesting that segmental duplication played a vital role in the expansion of the SlCCT and SmCCT family genes. Cis-acting element prediction indicated that SlCCT and SmCCT were likely to be involved in multiple responses stimulated by light, phytohormones, and abiotic stress. RT-qPCR analysis revealed that SmCCT15, SlCCT6/SlCCT14, and SlCCT23/SmCCT9 responded significantly to salt, drought, and cold stress, respectively. Our comprehensive analysis of the CCT gene family in tomato and eggplant provides a basis for further studies on its molecular role in regulating flowering and resistance to abiotic stress, and provides valuable candidate gene resources for tomato and eggplant molecular breeding. [ABSTRACT FROM AUTHOR]

Coastal saline soils are an important soil resource that, when restored, can enhance arable land and preserve the natural ecology. With the aim of improving the use of coastal saline soils, we conducted a spot survey at Bohai coastal saline land to investigate the differences in soil properties between different vegetation types. The soil physical and chemical properties of various vegetation types, including Aeluropus sinensis, Imperata cylindrica, Tamarix chinensis, Lycium chinense, Hibiscus moscheutos, Helianthus annuus, Gossypium hirsutum, and Zea mays, were examined at two depth layers: 0–20 cm and 20–40 cm, and in two seasons, spring and autumn. The soil properties were compared with bare land as a control. The results indicated that the electrical conductivity, total soil salt content, sodium adsorption ratio, and bulk density of soils with vegetation cover were lower than those with bare land. On the other hand, soil pH, organic matter content, mean weight diameter, and saturated hydraulic conductivity were higher. The redundancy analysis results revealed a substantial positive correlation between soil pH, saturated hydraulic conductivity, water content, mean weight diameter, and organic matter content, as well as a significant positive correlation between soil electrical conductivity, total soil salt content, sodium adsorption ratio, and bulk density. Soil pH, saturated hydraulic conductivity, water content, mean weight diameter, organic matter content, and soil electrical conductivity, total soil salt content, sodium adsorption ratio, and bulk density were negatively correlated. The results of the structural equation model and variance decomposition showed that soil organic matter and bulk density were the key factors affecting the degree of soil salinization, and compared with their independent effects, their combined effect on soil salinization was greater. This study's conclusions can provide a point of reference for further research on the mechanisms of soil improvement and desalinization in coastal saline land. [ABSTRACT FROM AUTHOR]

Cytoplasmic male sterility (CMS) is important for commercial hybrid seed production. However, it is still not used in eggplant (Solanum melongena L.), and corresponding regulatory genes and mechanisms of action have not been reported. We report CMS line 327A, which was derived from the hybridization between cultivated and wild eggplants. By looking at different stages of anther development under a microscope, we saw that the 327A anther's tapetum layer vacuolized during meiosis, which caused abortion. To investigate the 327A CMS regulatory genes, the mitochondrial genomes of 327A and its maintainer line 327B were assembled de novo. It was found that 15 unique ORFs (Open Reading Frame) were identified in 327A. RT-PCR and RT-QPCAR tests confirmed that orf312a and orf172a, 327A-specific ORFs with a transmembrane domain, were strongly expressed in sterile anthers of 327A. In addition, orf312a has a chimeric structure with the ribosomal protein subunit rpl16. Therefore, orf312a and orf172a can be considered strong candidate genes for CMS. Concurrently, we analyzed the characteristics of CMS to develop a functional molecular marker, CMS312, targeting a future theoretical basis for eggplant CMS three-line molecular breeding. [ABSTRACT FROM AUTHOR]

GOLDEN2-like (GLK) transcription factor genes are involved in chloroplast biogenesis during all stages of plant growth and development, as well as in the response to biotic and abiotic stresses. However, little is known about this transcription factor family in eggplant. In this study, we identified 54 GLK genes in the eggplant genome (S. melongena L.) and classified them into seven groups (G1–G7). Structural analysis illustrated that the SmGLK proteins of specific groups are relatively conserved. Cis-acting elements indicated that these genes are likely to be involved in multiple responses stimulated by light, phytohormones, and abiotic stress. Collinear analysis indicated that expansion of the SmGLK gene family primarily occurred through segmental duplication. Tissue-specific expression analysis revealed that SmGLKs were preferentially expressed in leaves, fruits, and seeds. Further screening of SmGLK genes revealed their differential expression under various treatments. Notably, SmGLK18 was significantly responsive to multiple phytohormones and stress treatments, whereas SmGLK3 and SmGLK12 were highly induced by ABA, IAA, SA, and drought treatments. Our study provides new information on the eggplant GLK family systematically and comprehensively. For the first time, we propose that SmGLK18 may play a key role in improving heat resistance. This study provides valuable candidate gene resources for further functional research and will benefit eggplant molecular breeding. [ABSTRACT FROM AUTHOR]

Organic amendment is an effective method to reclaim salt-affected soil. However, in coastal land with shallow saline groundwater, it is limited known about the mechanism of organic amendment on soil desalinization. Thus, to examine the effect of topsoil organic matter content on soil water/salt transport and distribution, two-year field observations in Bohai coastal land, North China, and soil column experiments simulating salt accumulation and salt leaching were conducted, respectively. There were different organic fertilizer amendment rates in 0–20 cm topsoil, 0% (CK), 50% (OA 0.5), and 100% (OA 1.0) (w/w) for soil column experiments. Field observation showed that after organic amendment (OA), the soil's physical structure was improved, and less of the increase in topsoil salt content was observed, with more salt accumulated in deep soil layers during the dry season. In addition, OA greatly promoted salt leaching during the rainy seasons. The results of the soil column tests further indicated that OA treatments significantly inhibited soil evaporation, with less salt accumulated in the topsoil. Although there was no difference in soil water distribution between the CK and OA 0.5 treatment, the topsoil EC for the OA 0.5 treatment was significantly lower than that for CK. During soil water infiltration, the OA 0.5 and OA 1.0 treatments significantly increased the infiltration rates, enhanced the wetting front, and promoted salt leaching to deeper soil layers, compared with CK. The improvement of soil organic amounts could make the soil more self-resistant to the coastal salinization. The findings of this study provide some insights into soil water/salt regulation in heterogeneous soil masses and on the permanent management of coastal saline farmland. [ABSTRACT FROM AUTHOR]

Fruit firmness is crucial for storability, making cultivating varieties with higher firmness a key target in tomato breeding. In recent years, tomato varieties primarily rely on hybridizing ripening mutants to produce F 1 hybrids to enhance firmness. However, the undesirable traits introduced by these mutants often lead to a decline in the quality of the varieties. CRISPR/Cas9 has emerged as a crucial tool in accelerating plant breeding and improving specific target traits as technology iterates. In this study, we used a CRISPR/Cas9 system to simultaneously knock out two genes, FIS1 and PL , which negatively regulate firmness in tomato. We generated single and double gene knockout mutants utilizing the tomato genetic transformation system. The fruit firmness of all knockout mutants exhibited a significant enhancement, with the most pronounced improvement observed in the double mutant. Furthermore, we assessed other quality-related traits of the mutants; our results indicated that the fruit quality characteristics of the gene-edited lines remained statistically comparable to those of the wild type. This approach enabled us to create transgenic-free mutants with diverse genotypes across fewer generations, facilitating rapid improvements in tomato firmness. This study offers significant insights into molecular design breeding strategies for tomato.