38 results on '"Lyann Sim"'
Search Results
2. X-ray crystallographic structure of a bacterial polysialyltransferase provides insight into the biosynthesis of capsular polysialic acid
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Christian Lizak, Liam J. Worrall, Lars Baumann, Moritz M. Pfleiderer, Gesa Volkers, Tianjun Sun, Lyann Sim, Warren Wakarchuk, Stephen G. Withers, and Natalie C. J. Strynadka
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Medicine ,Science - Abstract
Abstract Polysialic acid (polySia) is a homopolymeric saccharide that is associated with some neuroinvasive pathogens and is found on selective cell types in their eukaryotic host. The presence of a polySia capsule on these bacterial pathogens helps with resistance to phagocytosis, cationic microbial peptides and bactericidal antibody production. The biosynthesis of bacterial polySia is catalysed by a single polysialyltransferase (PST) transferring sialic acid from a nucleotide-activated donor to a lipid-linked acceptor oligosaccharide. Here we present the X-ray structure of the bacterial PST from Mannheimia haemolytica serotype A2, thereby defining the architecture of this class of enzymes representing the GT38 family. The structure reveals a prominent electropositive groove between the two Rossmann-like domains forming the GT-B fold that is suitable for binding of polySia chain products. Complex structures of PST with a sugar donor analogue and an acceptor mimetic combined with kinetic studies of PST active site mutants provide insight into the principles of substrate binding and catalysis. Our results are the basis for a molecular understanding of polySia biosynthesis in bacteria and might assist the production of polysialylated therapeutic reagents and the development of novel antibiotics.
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- 2017
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3. Unexpected high digestion rate of cooked starch by the Ct-maltase-glucoamylase small intestine mucosal α-glucosidase subunit.
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Amy Hui-Mei Lin, Buford L Nichols, Roberto Quezada-Calvillo, Stephen E Avery, Lyann Sim, David R Rose, Hassan Y Naim, and Bruce R Hamaker
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Medicine ,Science - Abstract
For starch digestion to glucose, two luminal α-amylases and four gut mucosal α-glucosidase subunits are employed. The aim of this research was to investigate, for the first time, direct digestion capability of individual mucosal α-glucosidases on cooked (gelatinized) starch. Gelatinized normal maize starch was digested with N- and C-terminal subunits of recombinant mammalian maltase-glucoamylase (MGAM) and sucrase-isomaltase (SI) of varying amounts and digestion periods. Without the aid of α-amylase, Ct-MGAM demonstrated an unexpected rapid and high digestion degree near 80%, while other subunits showed 20 to 30% digestion. These findings suggest that Ct-MGAM assists α-amylase in digesting starch molecules and potentially may compensate for developmental or pathological amylase deficiencies.
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- 2012
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4. Vinyl Halide‐Modified Unsaturated Cyclitols are Mechanism‐Based Glycosidase Inhibitors
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Phillip M. Danby, Andrew Jeong, Lyann Sim, Ryan P. Sweeney, Jacob F. Wardman, Ryan Karimi, Andreas Geissner, Liam J. Worrall, Jolene. P. Reid, Natalie C. J. Strynadka, and Stephen G. Withers
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General Medicine ,General Chemistry ,Catalysis - Published
- 2023
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5. Mammalian sialyltransferases allow efficient Escherichia coli-based production of mucin-type O-glycoproteins but can also transfer Kdo
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Lyann Sim, Nicole Thompson, Andreas Geissner, Stephen G Withers, and Warren W Wakarchuk
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Mammals ,Swine ,Escherichia coli ,Mucins ,Animals ,Antigens, Viral, Tumor ,Biochemistry ,Sialyltransferases ,Glycoproteins - Abstract
The prospect of producing human-like glycoproteins in bacteria is becoming attractive as an alternative to already-established but costly mammalian cell expression systems. We previously described an Escherichia coli expression platform that uses a dual-plasmid approach to produce simple mucin type O-glycoproteins: one plasmid encoding the target protein and another O-glycosylation machinery. Here, we expand the capabilities of our platform to carry out sialylation and demonstrate the high-yielding production of human interferon α2b and human growth hormone bearing mono- and disialylated T-antigen glycans. This is achieved through engineering an E. coli strain to produce CMP-Neu5Ac and introducing various α-2,3- and α-2,6 mammalian or bacterial sialyltransferases into our O-glycosylation operons. We further demonstrate that mammalian sialyltransferases, including porcine ST3Gal1, human ST6GalNAc2 and human ST6GalNAc4, are very effective in vivo and outperform some of the bacterial sialyltransferases tested, including Campylobacter jejuni Cst-I and Cst-II. In the process, we came upon a way of modifying T-Antigen with Kdo, using a previously uncharacterised Kdo-transferase activity of porcine ST3Gal1. Ultimately, the heterologous expression of mammalian sialyltransferases in E. coli shows promise for the further development of bacterial systems in therapeutic glycoprotein production.
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- 2021
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6. Prevention of vascular-allograft rejection by protecting the endothelial glycocalyx with immunosuppressive polymers
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Caigan Du, Haiming D. Luo, Megan K. Levings, Christine M. Wardell, Kevin Rey, Jayachandran N. Kizhakkedathu, Lyann Sim, Jonathan C. Choy, Qiunong Guan, Stephen G. Withers, Zheng J. Zhang, Franklin Tam, Mahdis Monajemi, Haisle Moon, Majid Mojibian, Ashani Montgomery, Erika M. J. Siren, Winnie Enns, and Jiao Jing Wang
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Pathology ,medicine.medical_specialty ,Biomedical Engineering ,Medicine (miscellaneous) ,Adhesion (medicine) ,Bioengineering ,Regenerative medicine ,Organ transplantation ,03 medical and health sciences ,0302 clinical medicine ,Tissue engineering ,Medicine ,030304 developmental biology ,0303 health sciences ,Kidney ,business.industry ,medicine.disease ,3. Good health ,Computer Science Applications ,Transplantation ,surgical procedures, operative ,medicine.anatomical_structure ,business ,Ligation ,Perfusion ,030215 immunology ,Biotechnology - Abstract
Systemic immunosuppression for the mitigation of immune rejection after organ transplantation causes adverse side effects and constrains the long-term benefits of the transplanted graft. Here we show that protecting the endothelial glycocalyx in vascular allografts via the enzymatic ligation of immunosuppressive glycopolymers under cold-storage conditions attenuates the acute and chronic rejection of the grafts after transplantation in the absence of systemic immunosuppression. In syngeneic and allogeneic mice that received kidney transplants, the steric and immunosuppressive properties of the ligated polymers largely protected the transplanted grafts from ischaemic reperfusion injury, and from immune-cell adhesion and thereby immunocytotoxicity. Polymer-mediated shielding of the endothelial glycocalyx following organ procurement should be compatible with clinical procedures for transplant preservation and perfusion, and may reduce the damage and rejection of transplanted organs after surgery. Protection of the endothelial glycocalyx in vascular allografts via the enzymatic ligation of immunosuppressive glycopolymers prevents allograft rejection after transplantation in the absence of systemic immunosuppression.
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- 2021
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7. Discovery and Development of Promiscuous O-Glycan Hydrolases for Removal of Intact Sialyl T-Antigen
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Lyann Sim, Peter Rahfeld, Connor Morgan-Lang, Stephen G. Withers, Jacob F. Wardman, Feng Liu, and Steven J. Hallam
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Glycan ,Erythrocytes ,Glycosylation ,CAZy ,Glycoside Hydrolases ,Swine ,Sequence analysis ,CHO Cells ,Biochemistry ,Substrate Specificity ,03 medical and health sciences ,Cricetulus ,Bacterial Proteins ,Hydrolase ,Animals ,Humans ,030304 developmental biology ,0303 health sciences ,biology ,Chemistry ,030302 biochemistry & molecular biology ,Mucins ,General Medicine ,Protein engineering ,carbohydrates (lipids) ,Streptococcus pneumoniae ,Mutation ,Mutagenesis, Site-Directed ,biology.protein ,Molecular Medicine ,Phylogenetic profiling ,Sequence space (evolution) ,Function (biology) - Abstract
Mucin-type O-glycosylation (O-glycosylation) is a common post-translational modification that confers distinct biophysical properties to proteins and plays crucial roles in intercellular signaling. Yet, despite the importance of O-glycans, relatively few tools exist for their analysis and modification. In particular, there is a need for enzymes that can cleave the wide range of O-glycan structures found on protein surfaces, to facilitate glycan profiling and editing. Through functional metagenomic screening of the human gut microbiome, we discovered endo-O-glycan hydrolases from CAZy family GH101 that are capable of slowly cleaving the intact sialyl T-antigen trisaccharide (a ubiquitous O-glycan structure in humans) in addition to their primary activity against the T-antigen disaccharide. We then further explored this sequence space through phylogenetic profiling and analysis of representative enzymes, revealing large differences in the levels of this promiscuous activity between enzymes within the family. Through structural and sequence analysis, we identified active site residues that modulate specificity. Through subsequent rational protein engineering, we improved the activity of an enzyme identified by phylogenetic profiling sufficiently that substantial removal of the intact sialyl T-antigen from proteins could be readily achieved. Our best sialyl T-antigen hydrolase mutant, SpGH101 Q868G, is further shown to function on a number of proteins, tissues, and cells. Access to this enzyme opens up improved methodologies for unraveling the glycan code.
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- 2021
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8. 425.5: Achieving Localized Immunosuppression Through Ex Vivo Engineering of Organ Blood Vessels
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Daniel Luo, Erika MJ Siren, Winnie Enns, Lyann Sim, Franklin Tam, Javairia Rahim, Caigan Du, Dicken Ko, Steve Withers, Jonathan C Choy, and Jayachandran N Kizhakkedathu
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Transplantation - Published
- 2022
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9. An enzymatic pathway in the human gut microbiome that converts A to universal O type blood
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Iren Constantinescu, Stephen G. Withers, Peter Rahfeld, Connor Morgan-Lang, Steven J. Hallam, Lyann Sim, Jayachandran N. Kizhakkedathu, and Haisle Moon
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Microbiology (medical) ,chemistry.chemical_classification ,0303 health sciences ,CAZy ,030306 microbiology ,Chemistry ,Immunology ,Cell Biology ,H antigen ,Applied Microbiology and Biotechnology ,Microbiology ,03 medical and health sciences ,Enzyme ,Antigen ,Biochemistry ,Hydrolase ,Genetics ,Microbiome ,Gene ,030304 developmental biology ,Whole blood - Abstract
Access to efficient enzymes that can convert A and B type red blood cells to 'universal' donor O would greatly increase the supply of blood for transfusions. Here we report the functional metagenomic screening of the human gut microbiome for enzymes that can remove the cognate A and B type sugar antigens. Among the genes encoded in our library of 19,500 expressed fosmids bearing gut bacterial DNA, we identify an enzyme pair from the obligate anaerobe Flavonifractor plautii that work in concert to efficiently convert the A antigen to the H antigen of O type blood, via a galactosamine intermediate. The X-ray structure of the N-acetylgalactosamine deacetylase reveals the active site and mechanism of the founding member of an esterase family. The galactosaminidase expands activities within the CAZy family GH36. Their ability to completely convert A to O of the same rhesus type at very low enzyme concentrations in whole blood will simplify their incorporation into blood transfusion practice, broadening blood supply.
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- 2019
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10. Prevention of vascular-allograft rejection by protecting the endothelial glycocalyx with immunosuppressive polymers
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Erika M J, Siren, Haiming D, Luo, Franklin, Tam, Ashani, Montgomery, Winnie, Enns, Haisle, Moon, Lyann, Sim, Kevin, Rey, Qiunong, Guan, Jiao-Jing, Wang, Christine M, Wardell, Mahdis, Monajemi, Majid, Mojibian, Megan K, Levings, Zheng J, Zhang, Caigan, Du, Stephen G, Withers, Jonathan C, Choy, and Jayachandran N, Kizhakkedathu
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Graft Rejection ,Mice ,Polymers ,Animals ,Allografts ,Glycocalyx ,Immunosuppressive Agents - Abstract
Systemic immunosuppression for the mitigation of immune rejection after organ transplantation causes adverse side effects and constrains the long-term benefits of the transplanted graft. Here we show that protecting the endothelial glycocalyx in vascular allografts via the enzymatic ligation of immunosuppressive glycopolymers under cold-storage conditions attenuates the acute and chronic rejection of the grafts after transplantation in the absence of systemic immunosuppression. In syngeneic and allogeneic mice that received kidney transplants, the steric and immunosuppressive properties of the ligated polymers largely protected the transplanted grafts from ischaemic reperfusion injury, and from immune-cell adhesion and thereby immunocytotoxicity. Polymer-mediated shielding of the endothelial glycocalyx following organ procurement should be compatible with clinical procedures for transplant preservation and perfusion, and may reduce the damage and rejection of transplanted organs after surgery.
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- 2020
11. Characterization of a thermostable endoglucanase fromCellulomonas fimiATCC484
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Stephen G. Withers, Hirak Saxena, Marc de Asis, Mirko Zierke, Lyann Sim, Warren W. Wakarchuk, and Bryan Hsu
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0301 basic medicine ,Protein Denaturation ,Cellulase ,Polysaccharide ,medicine.disease_cause ,Biochemistry ,Microbiology ,Cell wall ,03 medical and health sciences ,Cell Wall ,Enzyme Stability ,medicine ,Biomass ,Cellulomonas ,Molecular Biology ,Escherichia coli ,chemistry.chemical_classification ,030102 biochemistry & molecular biology ,biology ,Hydrolysis ,Temperature ,Cell Biology ,biology.organism_classification ,030104 developmental biology ,chemistry ,biology.protein ,Carbohydrate-binding module ,Bacteria ,Mesophile - Abstract
Bacteria in the genus Cellulomonas are well known as secretors of a variety of mesophilic carbohydrate degrading enzymes (e.g., cellulases and hemicellulases), active against plant cell wall polysaccharides. Recent proteomic analysis of the mesophilic bacterium Cellulomonas fimi ATCC484 revealed uncharacterized enzymes for the hydrolysis of plant cell wall biomass. Celf_1230 (CfCel6C), a secreted protein of Cellulomonas fimi ATCC484, is a novel member of the GH6 family of cellulases that could be successfully expressed in Escherichia coli. This enzyme displayed very little enzymatic/hydrolytic activity at 30 °C, but showed an optimal activity around 65 °C, and exhibited a thermal denaturation temperature of 74 °C. In addition, it also strongly bound to filter paper despite having no recognizable carbohydrate binding module. Our experiments show that CfCel6C is a thermostable endoglucanase with activity on a variety of β-glucans produced by an organism that struggles to grow above 30 °C.
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- 2018
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12. Directed evolution of bacterial polysialyltransferases
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Bettina Janesch, Warren W. Wakarchuk, Alison Mark, Stephen G. Withers, Lars Baumann, Nicole K. Thompson, Sadia Rahmani, and Lyann Sim
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Mutant ,Biochemistry ,law.invention ,03 medical and health sciences ,chemistry.chemical_compound ,law ,Glycosyltransferase ,Enzyme Stability ,Escherichia coli ,030304 developmental biology ,Gene Library ,chemistry.chemical_classification ,0303 health sciences ,biology ,Chemistry ,030302 biochemistry & molecular biology ,Wild type ,Directed evolution ,In vitro ,Sialyltransferases ,Sialic acid ,High-Throughput Screening Assays ,Enzyme ,Solubility ,Mutation ,biology.protein ,Recombinant DNA ,Biocatalysis ,Directed Molecular Evolution - Abstract
Polysialyltransferases (polySTs) are glycosyltransferases that synthesize polymers of sialic acid found in vertebrates and some bacterial pathogens. Bacterial polySTs have utility in the modification of therapeutic proteins to improve serum half-life, and the potential for tissue engineering. PolySTs are membrane-associated proteins and as recombinant proteins suffer from inherently low solubility, low expression levels and poor thermal stability. To improve their physicochemical and biochemical properties, we applied a directed evolution approach using a FACS-based ultrahigh-throughput assay as a simple, robust and reliable screening method. We were able to enrich a large mutant library and, in combination with plate-based high-throughput secondary screening, we discovered mutants with increased enzymatic activity and improved stability compared to the wildtype enzyme. This work presents a powerful strategy for the screening of directed evolution libraries of bacterial polySTs to identify better catalysts for in vitro polysialylation of therapeutics.
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- 2018
13. Structural and biochemical characterization of the<scp>N</scp>‐terminal domain of flocculin<scp>L</scp>g‐<scp>F</scp>lo1p from<scp>S</scp>accharomyces pastorianusreveals a unique specificity for phosphorylated mannose
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Anette Henriksen, Kjeld Olesen, Lyann Sim, and Magnus Groes
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Models, Molecular ,Surface Properties ,Molecular Sequence Data ,Mannose ,Biology ,Crystallography, X-Ray ,Biochemistry ,Substrate Specificity ,Fungal Proteins ,Saccharomyces ,chemistry.chemical_compound ,Yeast flocculation ,Amino Acid Sequence ,Molecular Biology ,Conserved Sequence ,Binding selectivity ,Mannan ,Binding Sites ,Mannosephosphates ,Osmolar Concentration ,Glucosephosphates ,Flocculation ,Lectin ,Cell Biology ,computer.file_format ,Hydrogen-Ion Concentration ,Protein Data Bank ,Saccharomyces pastorianus ,biology.organism_classification ,Yeast ,Protein Structure, Tertiary ,Mannose-Binding Lectins ,chemistry ,Structural Homology, Protein ,biology.protein ,Calcium ,computer ,Protein Binding - Abstract
UNLABELLED The mechanism of yeast flocculation is generally considered to be mediated through the interaction of cell surface flocculins and mannan carbohydrates. In the present study, the crystal structure of the soluble 25-kDa lectin domain of flocculin 1 from brewer's yeast (Lg-Flo1p) was resolved to 2.5 A, and its binding specificity towards oligosaccharides was investigated by fluorescence spectroscopy. Lg-Flo1p displays broad specificity towards sugars and has a 14-fold higher affinity for mannose 1-phosphate and glucose 1-phosphate compared to their unphosphorylated counterparts. Based on the results of a structural analysis, we propose that this higher affinity is the result of a charge interaction with a lysine residue in a carbohydrate-binding loop region, NAKAL, unique to NewFlo type flocculins. This raises the possibility of a unique mechanism of flocculation in NewFlo type yeast, which recognizes phosphorylated cell surface mannans. DATABASE Structural data have been deposited in the Protein Data Bank under accession number 4GQ7.
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- 2013
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14. Mapping the intestinal alpha-glucogenic enzyme specificities of starch digesting maltase-glucoamylase and sucrase-isomaltase
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Lyann Sim, Roberto Quezada-Calvillo, David R. Rose, Kyra Jones, B. Mario Pinto, Hassan Y. Naim, Jayakanthan Kumarasamy, Buford L. Nichols, Sankar Mohan, Hui Liu, and Stephen E. Avery
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1-Deoxynojirimycin ,Glycoside Hydrolase Inhibitors ,Clinical Biochemistry ,Pharmaceutical Science ,Biochemistry ,Sugar Alcohols ,Catalytic Domain ,Drug Discovery ,medicine ,Glycoside hydrolase ,Enzyme Inhibitors ,Selenium Compounds ,Molecular Biology ,Acarbose ,chemistry.chemical_classification ,Maltase-glucoamylase ,biology ,Sulfates ,Miglitol ,Monosaccharides ,Organic Chemistry ,Starch ,alpha-Glucosidases ,Sucrase-Isomaltase Complex ,Kinetics ,Enzyme ,chemistry ,biology.protein ,Molecular Medicine ,Sucrase-isomaltase ,Glucosidases ,medicine.drug - Abstract
Inhibition of intestinal α-glucosidases and pancreatic α-amylases is an approach to controlling blood glucose and serum insulin levels in individuals with Type II diabetes. The two human intestinal glucosidases are maltase-glucoamylase and sucrase-isomaltase. Each incorporates two family 31 glycoside hydrolases responsible for the final step of starch hydrolysis. Here we compare the inhibition profiles of the individual N- and C-terminal catalytic subunits of both glucosidases by clinical glucosidase inhibitors, acarbose and miglitol, and newly discovered glucosidase inhibitors from an Ayurvedic remedy used for the treatment of Type II diabetes. We show that features of the compounds introduce selectivity towards the subunits. Together with structural data, the results enhance the understanding of the role of each catalytic subunit in starch digestion, helping to guide the development of new compounds with subunit specific antidiabetic activity. The results may also have relevance to other metabolic diseases such as obesity and cardiovascular disease.
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- 2011
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15. A Bacterial Expression Platform for Production of Therapeutic Proteins Containing Human-like O-Linked Glycans
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Sadia Rahmani, Stephen G. Withers, Laura Kell, Warren W. Wakarchuk, Nakita Buenbrazo, Lyann Sim, Shawn Defrees, and Ting Du
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Glycan ,Glycosylation ,Operon ,Clinical Biochemistry ,Protein Disulfide-Isomerases ,Isomerase ,Interferon alpha-2 ,medicine.disease_cause ,01 natural sciences ,Biochemistry ,Campylobacter jejuni ,UDPglucose 4-Epimerase ,chemistry.chemical_compound ,Plasmid ,Bacterial Proteins ,Polysaccharides ,Drug Discovery ,Escherichia coli ,medicine ,Humans ,Transferase ,Molecular Biology ,Pharmacology ,biology ,010405 organic chemistry ,Galactosyltransferases ,biology.organism_classification ,Recombinant Proteins ,0104 chemical sciences ,carbohydrates (lipids) ,chemistry ,Growth Hormone ,biology.protein ,N-Acetylgalactosaminyltransferases ,Molecular Medicine ,lipids (amino acids, peptides, and proteins) - Abstract
Summary We have developed an Escherichia coli strain for the in vivo production of O-glycosylated proteins. This was achieved using a dual plasmid approach: one encoding a therapeutic protein target, and a second encoding the enzymatic machinery required for O-glycosylation. The latter plasmid encodes human polypeptide N-acetylgalactosaminyl transferase as well as a β1,3-galactosyl transferase and UDP-Glc(NAc)-4-epimerase, both from Campylobacter jejuni, and a disulfide bond isomerase of bacterial or human origin. The effectiveness of this two-plasmid synthetic operon system has been tested on three proteins with therapeutic potential: the native and an engineered version of the naturally O-glycosylated human interferon α-2b, as well as human growth hormone with one engineered site of glycosylation. Having established proof of principle for the addition of the core-1 glycan onto proteins, we are now developing this system as a platform for producing and modifying human protein therapeutics with more complex O-glycan structures in E. coli.
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- 2019
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16. Probing the active-site requirements of human intestinal N-terminal maltase-glucoamylase: Synthesis and enzyme inhibitory activities of a six-membered ring nitrogen analogue of kotalanol and its de-O-sulfonated derivative
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David R. Rose, Lyann Sim, Sankar Mohan, and B. Mario Pinto
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1-Deoxynojirimycin ,Nitrogen ,Stereochemistry ,Glucosidase Inhibitor ,Clinical Biochemistry ,Pharmaceutical Science ,Biochemistry ,Chemical synthesis ,Structure-Activity Relationship ,Catalytic Domain ,Drug Discovery ,Hydrolase ,medicine ,Humans ,Glycoside Hydrolase Inhibitors ,Glycoside hydrolase ,Sulfones ,Enzyme Inhibitors ,Molecular Biology ,Maltase-glucoamylase ,Glucosamine ,biology ,Sulfates ,Chemistry ,Miglitol ,Monosaccharides ,Organic Chemistry ,Active site ,alpha-Glucosidases ,Intestines ,Kinetics ,Enzyme inhibitor ,biology.protein ,Molecular Medicine ,medicine.drug - Abstract
In order to probe the active-site requirements of the human N-terminal subunit of maltase-glucoamylase (ntMGAM), one of the clinically relevant intestinal enzymes targeted for the treatment of type-2 diabetes, the syntheses of two new inhibitors are described. The target compounds are structural hybrids of kotalanol, a naturally occurring glucosidase inhibitor with a unique five-membered ring sulfonium-sulfate inner salt structure, and miglitol, a six-membered ring antidiabetic drug that is currently in clinical use. The compounds comprise the six-membered ring of miglitol and the side chain of kotalanol or its de-O-sulfonated derivative. Inhibition studies of these hybrid molecules with human ntMGAM indicated that they are inhibitors of this enzyme with comparable K i values to that of miglitol (kotalanol analogue: 2.3 ± 0.6 μM; corresponding de-O-sulfonated analogue: 1.4 ± 0.5 μM; miglitol: 1.0 ± 0.1 μM). However, they are less active compared to kotalanol ( K i = 0.19 ± 0.03 μM). These results suggest that the 3 T 2 enzyme-bound conformation of the five-membered thiocyclitol moiety of the kotalanol class of compounds more closely resembles the 4 H 3 conformation of the proposed transition state for the formation of an enzyme–substrate covalent intermediate in the glycosidase hydrolase family 31 (GH31)-catalyzed reaction.
- Published
- 2010
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17. A new class of glucosidase inhibitor: Analogues of the naturally occurring glucosidase inhibitor salacinol with different ring heteroatom substituents and acyclic chain extension
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Hui Liu, Lyann Sim, Rose, David R., and Pinto, B. Mario
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Type 2 diabetes -- Care and treatment ,Enzyme inhibitors -- Health aspects ,Biological sciences ,Chemistry - Abstract
Six chain-extended analogues of the naturally occurring glycosidase inhibitor salacinol, with ring-heteroatom variation, are synthesized for structure-activity studies with different glycosidase enzymes. The results show that four of these compounds inhibit recombinant human maltase glucoamylase with K(sub 1) values in the micromolar range, thus providing lead candidates for the treatment of Type 2 diabetes.
- Published
- 2006
18. New Glucosidase Inhibitors from an Ayurvedic Herbal Treatment for Type 2 Diabetes: Structures and Inhibition of Human Intestinal Maltase-Glucoamylase with Compounds from Salacia reticulata
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Ravindranath Nasi, Lyann Sim, Kumarasamy Jayakanthan, David R. Rose, Blair D. Johnston, B. M. Pinto, and Sankar Mohan
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Salacia reticulata ,Glycoside Hydrolase Inhibitors ,Pharmacology ,Crystallography, X-Ray ,Biochemistry ,Structure-Activity Relationship ,Sugar Alcohols ,Salacia ,medicine ,Humans ,Hypoglycemic Agents ,Glycoside hydrolase ,Enzyme Inhibitors ,Acarbose ,chemistry.chemical_classification ,Maltase-glucoamylase ,Binding Sites ,biology ,Plant Extracts ,Sulfates ,Chemistry ,Miglitol ,alpha-Glucosidases ,biology.organism_classification ,Medicine, Ayurvedic ,Kinetics ,Enzyme ,Diabetes Mellitus, Type 2 ,biology.protein ,Glucosidases ,medicine.drug - Abstract
An approach to controlling blood glucose levels in individuals with type 2 diabetes is to target alpha-amylases and intestinal glucosidases using alpha-glucosidase inhibitors acarbose and miglitol. One of the intestinal glucosidases targeted is the N-terminal catalytic domain of maltase-glucoamylase (ntMGAM), one of the four intestinal glycoside hydrolase 31 enzyme activities responsible for the hydrolysis of terminal starch products into glucose. Here we present the X-ray crystallographic studies of ntMGAM in complex with a new class of alpha-glucosidase inhibitors derived from natural extracts of Salacia reticulata, a plant used traditionally in Ayuverdic medicine for the treatment of type 2 diabetes. Included in these extracts are the active compounds salacinol, kotalanol, and de-O-sulfonated kotalanol. This study reveals that de-O-sulfonated kotalanol is the most potent ntMGAM inhibitor reported to date (K(i) = 0.03 microM), some 2000-fold better than the compounds currently used in the clinic, and highlights the potential of the salacinol class of inhibitors as future drug candidates.
- Published
- 2009
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19. Total Syntheses of Casuarine and Its 6-O-α-Glucoside: Complementary Inhibition towards Glycoside Hydrolases of the GH31 and GH37 Families
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Shirley M. Roberts, Andrea Goti, Francesca Cardona, Lyann Sim, Camilla Parmeggiani, Claudia Bonaccini, Gideon J. Davies, Tracey M. Gloster, Paola Gratteri, Enrico Faggi, and David R. Rose
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Glycoside Hydrolases ,Stereochemistry ,Catalysis ,Nitrone ,chemistry.chemical_compound ,Alkaloids ,Glucosides ,Glucoside ,Catalytic Domain ,Hydrolase ,Organic chemistry ,Pyrroles ,Glycoside hydrolase ,Trehalase ,Enzyme Inhibitors ,chemistry.chemical_classification ,Chemistry ,Organic Chemistry ,Total synthesis ,Hydrogen Bonding ,General Chemistry ,Cycloaddition ,Kinetics ,Enzyme ,Glucan 1,4-alpha-Glucosidase - Abstract
Total synthesis of naturally occurring casuarine (1) and the first total synthesis of casuarine 6-O-alpha-glucoside (2) were achieved through complete stereoselective nitrone cycloaddition, Tamao-Fleming oxidation and selective alpha-glucosylation as key steps. Biological assays of the two compounds proved their strong and selective inhibitory properties towards glucoamylase NtMGAM and trehalase Tre37A, respectively, which place them among the most powerful inhibitors of these enzymes. The structural determination of the complexes of NtMGAM with 1 and of Tre37A with 2 revealed interesting similarities in the catalytic sites of these two enzymes which belong to different families and clans.
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- 2009
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20. Luminal Starch Substrate 'Brake' on Maltase-Glucoamylase Activity Is Located within the Glucoamylase Subunit3
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Buford L. Nichols, Bruce R. Hamaker, Erwin E. Sterchi, Lyann Sim, Andrea Quaroni, Roberto Quezada-Calvillo, Gary D. Brayer, Zihua Ao, Claudia C. Robayo-Torres, and David R. Rose
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Maltase-glucoamylase ,Nutrition and Dietetics ,biology ,Medicine (miscellaneous) ,Active site ,Substrate (chemistry) ,Maltose ,Sucrase-isomaltase complex ,chemistry.chemical_compound ,chemistry ,Biochemistry ,Alpha-glucosidase ,biology.protein ,Maltotriose ,Maltase - Abstract
The detailed mechanistic aspects for the final starch digestion process leading to effective alpha-glucogenesis by the 2 mucosal alpha-glucosidases, human sucrase-isomaltase complex (SI) and human maltase-glucoamylase (MGAM), are poorly understood. This is due to the structural complexity and vast variety of starches and their intermediate digestion products, the poorly understood enzyme-substrate interactions occurring during the digestive process, and the limited knowledge of the structure-function properties of SI and MGAM. Here we analyzed the basic catalytic properties of the N-terminal subunit of MGAM (ntMGAM) on the hydrolysis of glucan substrates and compared it with those of human native MGAM isolated by immunochemical methods. In relation to native MGAM, ntMGAM displayed slower activity against maltose to maltopentose (G5) series glucose oligomers, as well as maltodextrins and alpha-limit dextrins, and failed to show the strong substrate inhibitory "brake" effect caused by maltotriose, maltotetrose, and G5 on the native enzyme. In addition, the inhibitory constant for acarbose was 2 orders of magnitude higher for ntMGAM than for native MGAM, suggesting lower affinity and/or fewer binding configurations of the active site in the recombinant enzyme. The results strongly suggested that the C-terminal subunit of MGAM has a greater catalytic efficiency due to a higher affinity for glucan substrates and larger number of binding configurations to its active site. Our results show for the first time, to our knowledge, that the C-terminal subunit of MGAM is responsible for the MGAM peptide's "glucoamylase" activity and is the location of the substrate inhibitory brake. In contrast, the membrane-bound ntMGAM subunit contains the poorly inhibitable "maltase" activity of the internally duplicated enzyme.
- Published
- 2008
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21. Synthesis of analogues of salacinol containing a carboxylate inner salt and their inhibitory activities against human maltase glucoamylase
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Wang Chen, Lyann Sim, B. Mario Pinto, and David R. Rose
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Models, Molecular ,Glycoside Hydrolases ,Stereochemistry ,Sulfonium ,Sulfonium Compounds ,Salt (chemistry) ,Biochemistry ,Analytical Chemistry ,Adduct ,Structure-Activity Relationship ,chemistry.chemical_compound ,Sugar Alcohols ,Nucleophile ,Humans ,Glycoside Hydrolase Inhibitors ,Carboxylate ,Enzyme Inhibitors ,chemistry.chemical_classification ,Maltase-glucoamylase ,Sulfates ,Organic Chemistry ,alpha-Glucosidases ,General Medicine ,Kinetics ,chemistry ,Yield (chemistry) ,Counterion - Abstract
The syntheses of analogues of the naturally occurring glycosidase inhibitor, salacinol, containing a carboxylate inner salt are described. Salacinol is a sulfonium ion with an internal sulfate counterion. The synthetic strategy relies on the nucleophilic attack of 1,4-anhydro-2,3,5-tri- O -benzyl-4-thio- d - or l -arabinitol at the least hindered carbon of 4,5-anhydro-2,3- O -isopropylidene- d -ribonic acid benzyl ester to yield coupled adducts. Deprotection of the coupled products gives the target compounds. The compound derived from d -arabinitol inhibits recombinant human maltase glucoamylase, one of the key intestinal enzymes involved in the breakdown of glucose oligosaccharides in the small intestine, with a K i value of 10 ± 1 μM.
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- 2007
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22. New Synthetic Routes to Chain-Extended Selenium, Sulfur, and Nitrogen Analogues of the Naturally Occurring Glucosidase Inhibitor Salacinol and their Inhibitory Activities against Recombinant Human Maltase Glucoamylase
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Heather Heipel, Ravindranath Nasi, Lyann Sim, Hui Liu, David R. Rose, B Mario Pinto, and Kumarasamy Jayakanthan
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chemistry.chemical_classification ,Cyclic compound ,Magnetic Resonance Spectroscopy ,Nitrogen ,Sulfates ,Chemistry ,Stereochemistry ,Sulfonium ,Glucosidase Inhibitor ,Organic Chemistry ,Oligosaccharide ,Chemical synthesis ,Recombinant Proteins ,Stereocenter ,Selenium ,chemistry.chemical_compound ,Sugar Alcohols ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Humans ,Moiety ,Glycoside Hydrolase Inhibitors ,Enzyme Inhibitors ,Protecting group ,Sulfur - Abstract
Six heteroanalogues (X = S, Se, NH) of the naturally occurring glucosidase inhibitor salacinol, containing polyhydroxylated, acyclic chains of 6-carbons, were synthesized for structure-activity studies with different glycosidase enzymes. The target zwitterionic compounds were synthesized by means of nucleophilic attack of the PMB-protected 1,4-anhydro-4-seleno-, 1,4-anhydro-4-thio-, and 1,4-anhydro-4-imino-D-arabinitols at the least hindered carbon atom of 1,3-cyclic sulfates. These 1,3-cyclic sulfates were derived from D-glucose and D-galactose, and significantly, they utilized butane diacetal as the protecting groups for the trans 2,3-diequatorial positions. Deprotection of the coupled products proceeded smoothly, unlike in previous attempts with different protecting groups, and afforded the target selenonium, sulfonium, and ammonium sulfates with different stereochemistry at the stereogenic centers. The four new heterosubstituted compounds (X = Se, NH) inhibited recombinant human maltase glucoamylase (MGA), one of the key intestinal enzymes involved in the breakdown of glucose oligosaccharides in the small intestine. The two selenium derivatives each had Ki values of 0.10 microM, giving the most active compounds to date in this general series of zwitterionic glycosidase inhibitors. The two nitrogen compounds also inhibited MGA but were less active, with Ki values of 0.8 and 35 microM. The compounds in which X = S showed Ki values of 0.25 and 0.17 microM. Comparison of these data with those reported previously for related compounds reinforces the requirements for an effective inhibitor of MGA. With respect to chain extension, the configurations at C-2' and C-4' are critical for activity, the configuration at C-3', bearing the sulfate moiety, being unimportant. It would also appear that the configuration at C-5' is important but the relationship is dependent on the heteroatom.
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- 2007
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23. New Chain-Extended Analogues of Salacinol and Blintol and Their Glycosidase Inhibitory Activities. Mapping the Active-Site Requirements of Human Maltase Glucoamylase
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Ravindranath Nasi, Lyann Sim, David R. Rose, and B Mario Pinto
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Maltase-glucoamylase ,Binding Sites ,Molecular Structure ,biology ,Sulfates ,Chemistry ,Stereochemistry ,Sulfonium ,Organic Chemistry ,Active site ,alpha-Glucosidases ,Chemical synthesis ,chemistry.chemical_compound ,Sugar Alcohols ,biology.protein ,Trifluoroacetic acid ,Humans ,Glycoside Hydrolase Inhibitors ,Glycoside hydrolase ,Enzyme Inhibitors ,Selenium Compounds ,Maltase ,Isomaltase - Abstract
The synthesis of new chain-extended sulfonium and selenonium salts of 1,4-anhydro-4-thio-(or 4-seleno)-d-arabinitol, analogues of the naturally occurring glycosidase inhibitor salacinol, is described. Nucleophilic attack at the least hindered carbon atom of 4,6-O-benzylidene-2,5-di-O-p-methoxybenzyl-d-mannitol-1,3-cyclic sulfate by 2,3,5-tri-O-p-methoxybenzyl-1,4-anhydro-4-thio-(or 4-seleno)-d-arabinitol gave the sulfonium and selenonium sulfates, respectively. Subsequent deprotection with trifluoroacetic acid yielded the target compounds. In these analogues, an extended polyhydroxylated aliphatic side chain has been incorporated while maintaining the stereochemistry of C-2' and C-3' of salacinol or blintol. These compounds were designed to probe the premise that they would bind with higher affinity to glucosidases than salacinol because the extra hydroxyl groups in the acyclic chain would make favorable polar contacts within the active site. Both target compounds inhibited recombinant human maltase glucoamylase, one of the key intestinal enzymes involved in the breakdown of glucose oligosaccharides in the small intestine, with Ki values in the low micromolar range. Comparison of these values to those of related compounds synthesized in previous studies has provided a better understanding of structure-activity relationships and the optimal stereochemistry at the different stereogenic centers required of an inhibitor of this enzyme. With respect to chain extension, the configurations at C-2' and C-4' are critical for activity, the configuration at C-3', bearing the sulfate moiety, being unimportant. The desired configuration at C-5' is also specified. However, comparison of the activities of the chain-extended analogues with those of salacinol and blintol indicates that there is no particular advantage of the chain-extension relative to salacinol or blintol. These results are similar to those reported earlier for kotalanol, a 7-carbon-extended derivative, versus salacinol against rat intestinal maltase, sucrase, and isomaltase.
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- 2006
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24. Inhibition of recombinant human maltase glucoamylase by salacinol and derivatives
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Dagmar Hahn, B. M. Pinto, Ahmad Ghavami, Douglas A. Kuntz, Lyann Sim, Elena J. Rossi, Buford L. Nichols, Erwin E. Sterchi, Blair D. Johnston, David R. Rose, Nag S. Kumar, and Monica G. Szczepina
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Glycoside Hydrolase Inhibitors ,Biology ,Transfection ,Biochemistry ,law.invention ,Sugar Alcohols ,Sulfation ,law ,Chlorocebus aethiops ,medicine ,Animals ,Humans ,Hypoglycemic Agents ,Glycoside hydrolase ,Enzyme Inhibitors ,Molecular Biology ,Cells, Cultured ,Acarbose ,Maltase-glucoamylase ,Sulfates ,Miglitol ,alpha-Glucosidases ,Cell Biology ,Recombinant Proteins ,Kinetics ,Drosophila melanogaster ,COS Cells ,Recombinant DNA ,medicine.drug - Abstract
Inhibitors targeting pancreatic alpha-amylase and intestinal alpha-glucosidases delay glucose production following digestion and are currently used in the treatment of Type II diabetes. Maltase-glucoamylase (MGA), a family 31 glycoside hydrolase, is an alpha-glucosidase anchored in the membrane of small intestinal epithelial cells responsible for the final step of mammalian starch digestion leading to the release of glucose. This paper reports the production and purification of active human recombinant MGA amino terminal catalytic domain (MGAnt) from two different eukaryotic cell culture systems. MGAnt overexpressed in Drosophila cells was of quality and quantity suitable for kinetic and inhibition studies as well as future structural studies. Inhibition of MGAnt was tested with a group of prospective alpha-glucosidase inhibitors modeled after salacinol, a naturally occurring alpha-glucosidase inhibitor, and acarbose, a currently prescribed antidiabetic agent. Four synthetic inhibitors that bind and inhibit MGAnt activity better than acarbose, and at comparable levels to salacinol, were found. The inhibitors are derivatives of salacinol that contain either a selenium atom in place of sulfur in the five-membered ring, or a longer polyhydroxylated, sulfated chain than salacinol. Six-membered ring derivatives of salacinol and compounds modeled after miglitol were much less effective as MGAnt inhibitors. These results provide information on the inhibitory profile of MGAnt that will guide the development of new compounds having antidiabetic activity.
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- 2006
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25. A New Class of Glucosidase Inhibitor: Analogues of the Naturally Occurring Glucosidase Inhibitor Salacinol with Different Ring Heteroatom Substituents and Acyclic Chain Extension
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Lyann Sim, Hui Liu, B Mario Pinto, and David R. Rose
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chemistry.chemical_classification ,Biological Products ,Cyclic compound ,Magnetic Resonance Spectroscopy ,Molecular Structure ,Sulfates ,Sulfonium ,Stereochemistry ,Glucosidase Inhibitor ,Organic Chemistry ,Thio ,Iminium ,alpha-Glucosidases ,Oligosaccharide ,Chemical synthesis ,Heterocyclic Compounds, 1-Ring ,chemistry.chemical_compound ,Sugar Alcohols ,chemistry ,Humans ,Glycoside Hydrolase Inhibitors ,Glycoside hydrolase ,Acids, Acyclic ,Enzyme Inhibitors - Abstract
Six chain-extended analogues of the naturally occurring glycosidase inhibitor salacinol, with ring-heteroatom variation, were synthesized for structure-activity studies with different glycosidase enzymes. The syntheses involved the reaction of PMB-protected D- and L- seleno-, thio-, and iminoarabinitol with a benzylidene- and isopropylidene-protected 1,3-cyclic sulfate, derived from commercially available D-sorbitol, in 1,1,1,3,3,3-hexafluoro-2-propanol containing potassium carbonate. Deprotection of the products afforded the novel selenonium, sulfonium, and iminium analogues of salacinol containing polyhydroxylated, monosulfated, extended acyclic chains of 6-carbons, differing in stereochemistry at the stereogenic centers and ring-heteroatom constitution. Four of these compounds inhibit recombinant human maltase glucoamylase, one of the key intestinal enzymes involved in the breakdown of glucose oligosaccharides in the small intestine, with Ki values in the micromolar range, thus providing lead candidates for the treatment of Type 2 diabetes.
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- 2006
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26. Oligosaccharide and substrate binding in the starch debranching enzyme barley limit dextrinase
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Birte Svensson, Marie Sofie Møller, Marie Bøjstrup, Anette Henriksen, Maher Abou Hachem, Monica M. Palcic, Lyann Sim, Ole Hindsgaul, and Michael Skovbo Windahl
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Models, Molecular ,Glycoside Hydrolases ,Starch ,Protein Conformation ,Substrate specificity ,Oligosaccharides ,Crystallography, X-Ray ,Substrate Specificity ,chemistry.chemical_compound ,Structural Biology ,Catalytic Domain ,Hydrolase ,α-1,6-glucosidase ,Thio-oligosaccharide ,Limit dextrinase ,Binding site ,Maltose ,Molecular Biology ,Binding Sites ,biology ,Hydrolysis ,food and beverages ,Active site ,Substrate (chemistry) ,Hordeum ,Pullulanase ,Transglycosylase ,chemistry ,Biochemistry ,Amylopectin ,biology.protein - Abstract
Complete hydrolytic degradation of starch requires hydrolysis of both the α-1,4- and α-1,6-glucosidic bonds in amylopectin. Limit dextrinase (LD) is the only endogenous barley enzyme capable of hydrolyzing the α-1,6-glucosidic bond during seed germination, and impaired LD activity inevitably reduces the maltose and glucose yields from starch degradation. Crystal structures of barley LD and active-site mutants with natural substrates, products and substrate analogues were sought to better understand the facets of LD–substrate interactions that confine high activity of LD to branched maltooligosaccharides. For the first time, an intact α-1,6-glucosidically linked substrate spanning the active site of a LD or pullulanase has been trapped and characterized by crystallography. The crystal structure reveals both the branch and main-chain binding sites and is used to suggest a mechanism for nucleophilicity enhancement in the active site. The substrate, product and analogue complexes were further used to outline substrate binding subsites and substrate binding restraints and to suggest a mechanism for avoidance of dual α-1,6- and α-1,4-hydrolytic activity likely to be a biological necessity during starch synthesis.
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- 2014
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27. Crystal Structure of the Chlamydomonas Starch Debranching Enzyme Isoamylase ISA1 Reveals Insights into the Mechanism of Branch Trimming and Complex Assembly
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Justin Findinier, Lyann Sim, David Dauvillée, Sophie R. Beeren, Anette Henriksen, Monica M. Palcic, Steven G. Ball, carlsberg institute, Institut carlsberg, Unité de Glycobiologie Structurale et Fonctionnelle UMR 8576 (UGSF), Institut National de la Recherche Agronomique (INRA)-Université de Lille-Centre National de la Recherche Scientifique (CNRS), CNRS, Université de Lille, IT University of Copenhagen [ITU], University of Copenhagen = Københavns Universitet [UCPH], Unité de Glycobiologie Structurale et Fonctionnelle - UMR 8576 [UGSF], Unité de Glycobiologie Structurale et Fonctionnelle UMR 8576 [UGSF], Unité de Glycobiologie Structurale et Fonctionnelle - UMR 8576 (UGSF), Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA), Carlsberg Fondation = Carlsbergfondet [Copenhague], Université de Lille-Centre National de la Recherche Scientifique (CNRS), and Université de Lille-Institut National de la Recherche Agronomique (INRA)-Centre National de la Recherche Scientifique (CNRS)
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Starch ,Chlamydomonas reinhardtii ,Biology ,Crystallography, X-Ray ,Biochemistry ,Glycogen debranching enzyme ,chemistry.chemical_compound ,Hydrolase ,Glycoside hydrolase ,Isoamylase ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,Molecular Biology ,Glucans ,Protein Structure, Tertiary ,Crystal Structure ,X-ray Crystallography ,Carbohydrate Biosynthesis ,Chlamydomonas ,Debranching Enzyme ,Starch Metabolism ,Glycosidase ,Plant Proteins ,Polysaccharide ,food and beverages ,Cell Biology ,biology.organism_classification ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM] ,chemistry ,Amylopectin ,Protein Structure and Folding - Abstract
International audience; The starch debranching enzymes isoamylase 1 and 2 (ISA1 and ISA2) are known to exist in a large complex and are involved in the biosynthesis and crystallization of starch. It is suggested that the function of the complex is to remove misplaced branches of growing amylopectin molecules, which would otherwise prevent the association and crystallization of adjacent linear chains. Here, we investigate the function of ISA1 and ISA2 from starch producing alga Chlamydomonas. Through complementation studies, we confirm that the STA8 locus encodes for ISA2 and sta8 mutants lack the ISA1*ISA2 heteromeric complex. However, mutants retain a functional dimeric ISA1 that is able to partly sustain starch synthesis in vivo. To better characterize ISA1, we have overexpressed and purified ISA1 from Chlamydomonas reinhardtii (CrISA1) and solved the crystal structure to 2.3 Å and in complex with maltoheptaose to 2.4 Å. Analysis of the homodimeric CrISA1 structure reveals a unique elongated structure with monomers connected end-to-end. The crystal complex reveals details about the mechanism of branch binding that explains the low activity of CrISA1 toward tightly spaced branches and reveals the presence of additional secondary surface carbohydrate binding sites.
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- 2014
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28. Maltase Glucoamylase (MGAM): Putting Diabetes in its Place! (LB85)
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Adesuwa Ero, Priya Muradia, Andrew Burwash, Alexandra Dolganow, Iris Liu, Susan M. Wall, Lyann Sim, and Alessandro Eid-Ricci
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Maltase-glucoamylase ,chemistry.chemical_classification ,Salacia reticulata ,biology ,Chemistry ,Glucosidase Inhibitor ,Type 2 diabetes ,Pharmacology ,medicine.disease ,biology.organism_classification ,Biochemistry ,Enzyme ,Diabetes mellitus ,Genetics ,medicine ,Regular insulin ,Molecular Biology ,Biotechnology ,Acarbose ,medicine.drug - Abstract
By 2050 1 in 3 Americans will have type 2 diabetes, a disease characterized by excessively high blood glucose levels. Typically, diabetes is treated with regular insulin injections and blood sugar monitoring. For centuries, Aryuvedic medicine has had a massive following, in part due to its natural remedies for diabetes deriving from an Indian herb, Salacia reticulata. These extracts were found to contain α-glucosidase inhibitors, a class of anti-diabetic drugs that competitively inhibit intestinal starch-digesting enzymes such as human Maltase Glucoamylase (MGAM). As MGAM is responsible for catalyzing the final glucose-releasing step of starch digestion, inhibiting MGAM would delay glucose absorption into the bloodstream. The Ashbury SMART (Students Modeling a Research Topic) Team modeled MGAM in complex with two inhibitors, salacinol and Acarbose, (PDBID 2QMJ & 3L4Z) using Jmol and 3D printing technology. The binding of -glucosidase inhibitor salacinol, derived from Salacia reticulata extracts and Acarbo...
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- 2014
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29. Convergent Evolution of Polysaccharide Debranching Defines a Common Mechanism for Starch Accumulation in Cyanobacteria and Plants
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Amandine Durand-Terrasson, Yasunori Nakamura, Jennifer Nirmal-Raj, Jean-Luc Putaux, Monica M. Palcic, Daiki Kobayashi, Christophe Colleoni, Lyann Sim, Emmanuel Maes, Malika Chabi, Debashish Bhattacharya, Xavier Roussel, Anne-Sophie Vercoutter-Edouart, Mathieu Ducatez, Maria Cecilia Arias, Yoshinori Utsumi, Satoshi Sasaki, Catherine Tirtiaux, Ugo Cenci, Eiji Suzuki, Steven G. Ball, Unité de Glycobiologie Structurale et Fonctionnelle UMR 8576 (UGSF), Institut National de la Recherche Agronomique (INRA)-Université de Lille-Centre National de la Recherche Scientifique (CNRS), Graduate School of Agricultural and Life Sciences [UTokyo] (GSALS), The University of Tokyo (UTokyo), Centre de Recherches sur les Macromolécules Végétales (CERMAV), Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF), Department of Ecology, Evolution, and Natural Resources and Institute of Marine and Coastal Sciences, Rutgers University, Rutgers, The State University of New Jersey [New Brunswick] (RU), Rutgers University System (Rutgers)-Rutgers University System (Rutgers), carlsberg institute, Institut carlsberg, Université de Lille-Centre National de la Recherche Scientifique (CNRS), Université Joseph Fourier - Grenoble 1 (UJF)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Carlsberg Fondation = Carlsbergfondet [Copenhague], inconnu, Inconnu, Unité de Glycobiologie Structurale et Fonctionnelle - UMR 8576 (UGSF), Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA), Department of Global Agricultural Sciences Graduate School of Agricultural and Life Sciences, The University of Tokyo, and Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes (UGA)
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0106 biological sciences ,Starch ,Plant Science ,Biology ,Photosynthesis ,Polysaccharide ,Cyanobacteria ,01 natural sciences ,Glycogen debranching enzyme ,03 medical and health sciences ,chemistry.chemical_compound ,Bacterial Proteins ,Plastid ,Cloning, Molecular ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,Phylogeny ,Research Articles ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,Plant Proteins ,2. Zero hunger ,chemistry.chemical_classification ,0303 health sciences ,Endosymbiosis ,Glycogen ,food and beverages ,Glycogen Debranching Enzyme System ,Oryza ,Cell Biology ,Biological Evolution ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM] ,Enzyme ,chemistry ,Biochemistry ,Mutagenesis ,010606 plant biology & botany - Abstract
International audience; : Starch, unlike hydrosoluble glycogen particles, aggregates into insoluble, semicrystalline granules. In photosynthetic eukaryotes, the transition to starch accumulation occurred after plastid endosymbiosis from a preexisting cytosolic host glycogen metabolism network. This involved the recruitment of a debranching enzyme of chlamydial pathogen origin. The latter is thought to be responsible for removing misplaced branches that would otherwise yield a water-soluble polysaccharide. We now report the implication of starch debranching enzyme in the aggregation of semicrystalline granules of single-cell cyanobacteria that accumulate both glycogen and starch-like polymers. We show that an enzyme of analogous nature to the plant debranching enzyme but of a different bacterial origin was recruited for the same purpose in these organisms. Remarkably, both the plant and cyanobacterial enzymes have evolved through convergent evolution, showing novel yet identical substrate specificities from a preexisting enzyme that originally displayed the much narrower substrate preferences required for glycogen catabolism.
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- 2013
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30. Unexpected High Digestion Rate of Cooked Starch by the Ct-Maltase-Glucoamylase Small Intestine Mucosal α-Glucosidase Subunit
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Stephen E. Avery, Amy Hui-Mei Lin, Roberto Quezada-Calvillo, Buford L. Nichols, Hassan Y. Naim, Lyann Sim, Bruce R. Hamaker, and David R. Rose
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Hot Temperature ,Anatomy and Physiology ,Starch ,Digestive Physiology ,lcsh:Medicine ,Biochemistry ,Maize starch ,chemistry.chemical_compound ,Mice ,Intestinal mucosa ,Intestine, Small ,Amylase ,Food science ,Cooking ,Intestinal Mucosa ,lcsh:Science ,Multidisciplinary ,biology ,Recombinant Proteins ,Enzymes ,medicine.anatomical_structure ,Medicine ,Small Intestine ,Digestion ,Metabolic Pathways ,Alpha-amylase ,Research Article ,Gastroenterology and Hepatology ,medicine ,Animals ,Humans ,Obesity ,Biology ,Nutrition ,Maltase-glucoamylase ,Digestive Functions ,Enzyme Kinetics ,lcsh:R ,alpha-Glucosidases ,Small intestine ,Protein Subunits ,Metabolism ,chemistry ,biology.protein ,Gelatin ,lcsh:Q ,alpha-Amylases ,Digestive System - Abstract
For starch digestion to glucose, two luminal α-amylases and four gut mucosal α-glucosidase subunits are employed. The aim of this research was to investigate, for the first time, direct digestion capability of individual mucosal α-glucosidases on cooked (gelatinized) starch. Gelatinized normal maize starch was digested with N- and C-terminal subunits of recombinant mammalian maltase-glucoamylase (MGAM) and sucrase-isomaltase (SI) of varying amounts and digestion periods. Without the aid of α-amylase, Ct-MGAM demonstrated an unexpected rapid and high digestion degree near 80%, while other subunits showed 20 to 30% digestion. These findings suggest that Ct-MGAM assists α-amylase in digesting starch molecules and potentially may compensate for developmental or pathological amylase deficiencies.
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- 2012
31. Specific starch digestion of maize alpha‐limit dextrins by recombinant mucosal glucosidase enzymes
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Lyann Sim, David R. Rose, Bruce R. Hamaker, Amy Hui-Mei Lin, Roberto Quezada-Calvillo, and Buford L. Nichols
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chemistry.chemical_classification ,Chemistry ,Alpha (ethology) ,Starch digestion ,Biochemistry ,law.invention ,Enzyme ,law ,Botany ,Genetics ,Recombinant DNA ,Molecular Biology ,Biotechnology - Abstract
Starch digestion requires two luminal enzymes, salivary and pancreatic alpha-amylase (AMY), and four small intestinal mucosal enzyme activities from the N- and C-terminals of maltase-glucoamylase (...
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- 2010
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32. Studies directed toward the stereochemical structure determination of the naturally occurring glucosidase inhibitor, kotalanol: synthesis and inhibitory activities against human maltase glucoamylase of seven-carbon, chain-extended homologues of salacinol
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Ravindranath Nasi, B. Mario Pinto, David R. Rose, Brian O. Patrick, and Lyann Sim
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Cyclic compound ,Stereochemistry ,Sulfonium ,Sulfates ,Organic Chemistry ,Monosaccharides ,Enantioselective synthesis ,Stereoisomerism ,alpha-Glucosidases ,Chemical synthesis ,Stereocenter ,chemistry.chemical_compound ,Kinetics ,Structure-Activity Relationship ,Sugar Alcohols ,chemistry ,Structure–activity relationship ,Organic chemistry ,Humans ,Glycoside Hydrolase Inhibitors ,Enzyme Inhibitors ,Sharpless asymmetric dihydroxylation ,Nuclear Magnetic Resonance, Biomolecular - Abstract
The synthesis of new seven-carbon, chain-extended sulfonium salts of 1,4-anhydro-4-thio- d-arabinitol, analogues of the naturally occurring glycosidase inhibitor salacinol, are described. These compounds were designed on the basis of the structure activity data of chain-extended analogues of salacinol, with the intention of determining the hitherto unknown stereochemical structure of kotalanol, the naturally occurring seven-carbon chain-extended analogue of salacinol. The target zwitterionic compounds were synthesized by means of nucleophilic attack of the PMB-protected 1,4-anhydro-4-thio- d-arabinitols at the least hindered carbon atom of two 1,3-cyclic sulfates differing in stereochemistry at only one stereogenic center. The desired cyclic sulfates were synthesized starting from d-glucose via Wittig olefination and Sharpless asymmetric dihydroxylation. Deprotection of the coupled products by using a two-step sequence afforded two sulfonium sulfates. Optical rotation data for one of our compounds indicated a correspondence with that reported for kotalanol. However, comparison of (1)H and (13)C NMR spectral data of the synthetic compounds with those of kotalanol indicated discrepancies. The collective data from this and published work were used to propose a tentative structure for the naturally occurring compound, kotalanol. Comparison of physical data of previously synthesized analogues with those for the recently isolated six-carbon chain analogue, ponkoranol or reticulanol, also led to elucidation of this structure. Interestingly, both our compounds inhibited recombinant human maltase glucoamylase (MGA), as expected from our previous structure activity studies of lower homologues, with K i values of 0.13 +/- 0.02 and 0.10 +/- 0.02 microM.
- Published
- 2008
33. Synthesis of 2-deoxy-2-fluoro and 1,2-ene derivatives of the naturally occurring glycosidase inhibitor, salacinol, and their inhibitory activities against recombinant human maltase glucoamylase
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Lyann Sim, B. Mario Pinto, Niloufar Choubdar, and David R. Rose
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Glycoside Hydrolase Inhibitors ,Glycoside Hydrolases ,Stereochemistry ,Biochemistry ,Coupling reaction ,Analytical Chemistry ,law.invention ,Sugar Alcohols ,Nucleophile ,law ,Catalytic Domain ,Moiety ,Humans ,Enzyme Inhibitors ,Ene reaction ,chemistry.chemical_classification ,Maltase-glucoamylase ,Molecular Structure ,Alkene ,Sulfates ,Organic Chemistry ,Hydrogen Bonding ,alpha-Glucosidases ,General Medicine ,Fluorine ,Recombinant Proteins ,chemistry ,Models, Chemical ,Recombinant DNA - Abstract
2-Deoxy-2-fluorosalacinol and a 1,2-ene derivative of the naturally occurring glycosidase inhibitor salacinol were synthesized for structure activity studies with human maltase glucoamylase (MGA). 2-Deoxy-2-fluorosalacinol was synthesized through the coupling reaction of 2-deoxy-2-fluoro-3,5-di-O-p-methoxybenzyl-1,4-anhydro-4-thio-D-arabinitol with 2,4-O-benzylidene-l-erythritol-1,3-cyclic sulfate in hexafluoroisopropanol (HFIP) containing 0.3 equiv of K(2)CO(3). Excess of K(2)CO(3) resulted in the elimination of HF from the coupled product, and the formation of an alkene derivative of salacinol. Nucleophilic attack of the 1,4-anhydro-4-thio-D-arabinitol moiety on the cyclic sulfate did not proceed in the absence of K(2)CO(3). No reaction was observed in acetonitrile containing K(2)CO(3). The target compounds were obtained by deprotection with TFA. The 2-deoxy-1-ene derivative of salacinol and 2-deoxy-2-fluorosalacinol inhibited recombinant human maltase glucoamylase, one of the key intestinal enzymes involved in the breakdown of glucose, with an IC(50) value of 150 microM and a K(i) value of 6+/-1 microM, respectively.
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- 2008
34. Human intestinal maltase-glucoamylase: crystal structure of the N-terminal catalytic subunit and basis of inhibition and substrate specificity
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Erwin E. Sterchi, Roberto Quezada-Calvillo, David R. Rose, Lyann Sim, and Buford L. Nichols
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Models, Molecular ,Stereochemistry ,Protein subunit ,Molecular Sequence Data ,Crystallography, X-Ray ,Protein Structure, Secondary ,Substrate Specificity ,chemistry.chemical_compound ,Protein structure ,Apoenzymes ,Structural Biology ,Glycoside hydrolase family 31 ,Catalytic Domain ,Hydrolase ,Humans ,Glycosyl ,Amino Acid Sequence ,Cysteine ,Disulfides ,Enzyme Inhibitors ,Intestinal Mucosa ,Molecular Biology ,Maltase-glucoamylase ,Binding Sites ,biology ,Sequence Homology, Amino Acid ,Active site ,Hydrogen Bonding ,alpha-Glucosidases ,Maltose ,Recombinant Proteins ,Intestines ,Molecular Weight ,Kinetics ,Protein Subunits ,chemistry ,Biochemistry ,Models, Chemical ,Mutation ,biology.protein ,Acarbose ,Protein Binding - Abstract
Human maltase-glucoamylase (MGAM) is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. MGAM is anchored to the small-intestinal brush-border epithelial cells and contains two homologous glycosyl hydrolase family 31 catalytic subunits: an N-terminal subunit (NtMGAM) found near the membrane-bound end and a C-terminal luminal subunit (CtMGAM). In this study, we report the crystal structure of the human NtMGAM subunit in its apo form (to 2.0 A) and in complex with acarbose (to 1.9 A). Structural analysis of the NtMGAM-acarbose complex reveals that acarbose is bound to the NtMGAM active site primarily through side-chain interactions with its acarvosine unit, and almost no interactions are made with its glycone rings. These observations, along with results from kinetic studies, suggest that the NtMGAM active site contains two primary sugar subsites and that NtMGAM and CtMGAM differ in their substrate specificities despite their structural relationship. Additional sequence analysis of the CtMGAM subunit suggests several features that could explain the higher affinity of the CtMGAM subunit for longer maltose oligosaccharides. The results provide a structural basis for the complementary roles of these glycosyl hydrolase family 31 subunits in the bioprocessing of complex starch structures into glucose.
- Published
- 2007
35. Synthesis and glycosidase inhibitory activities of chain-modified analogues of the glycosidase inhibitors salacinol and blintol
- Author
-
Ravindranath Nasi, B. Mario Pinto, David R. Rose, and Lyann Sim
- Subjects
Models, Molecular ,Glycoside Hydrolases ,Stereochemistry ,Heteroatom ,Alkylation ,Biochemistry ,Analytical Chemistry ,law.invention ,chemistry.chemical_compound ,Sugar Alcohols ,law ,Trifluoroacetic acid ,Carbohydrate Conformation ,Moiety ,Glycoside hydrolase ,Enzyme Inhibitors ,Selenium Compounds ,Maltase-glucoamylase ,Chemistry ,Sulfates ,Organic Chemistry ,General Medicine ,Kinetics ,Recombinant DNA ,Indicators and Reagents ,Carbohydrate conformation - Abstract
The synthesis of chain-modified analogues of the naturally-occurring glycosidase inhibitor, salacinol, and its selenium analogue, blintol is described. The modification consists of a frame shift of the sulfate moiety by one carbon atom in the zwitterionic structures as well as an extension of the acyclic chain to five carbons. The target molecules were synthesized by alkylation of 1,4-anhydro-2,3,5-tri-O-p-methoxybenzyl-4-thio (or seleno)-D-arabinitol at the ring heteroatom by 2,3,5-tri-O-p-methoxybenzyl D- or L-xylitol-1,4-cyclic sulfate, followed by deprotection with trifluoroacetic acid. Two of the four compounds inhibit recombinant human maltase glucoamylase, one of the key intestinal enzymes involved in the breakdown of glucose oligosaccharides in the small intestine, with Ki values of 20+/-4 and 53+/-5 microM.
- Published
- 2007
36. Synthesis of S-alkylated sulfonium-ions and their glucosidase inhibitory activities against recombinant human maltase glucoamylase
- Author
-
David R. Rose, B. Mario Pinto, Sankar Mohan, and Lyann Sim
- Subjects
Magnetic Resonance Spectroscopy ,Alkylation ,Stereochemistry ,Sulfonium ,Sulfonium Compounds ,Biochemistry ,Analytical Chemistry ,law.invention ,chemistry.chemical_compound ,law ,Humans ,Enzyme Inhibitors ,Alkyl ,chemistry.chemical_classification ,Maltase-glucoamylase ,Molecular Structure ,Organic Chemistry ,alpha-Glucosidases ,General Medicine ,Nuclear magnetic resonance spectroscopy ,Boron trichloride ,Recombinant Proteins ,Kinetics ,Enzyme ,chemistry ,Recombinant DNA ,Glucosidases - Abstract
The syntheses of nine S-alkylated, cyclic sulfonium-ions with varying alkyl chain lengths, as mimics of N-alkylated imino sugars, and their glucosidase inhibitory activities are described. The target compounds were synthesized by alkylation of 2,3,5-tri-O-benzyl-1,4-anhydro-4-thio-d-arabinitol at the ring sulfur atom using various alkyl halides, followed by deprotection using boron trichloride. Enzyme inhibitory assays against recombinant human maltase glucoamylase (MGA), a critical enzyme in the small intestine involved in the breakdown of glucose oligosaccharides into glucose itself, shows that they are effective inhibitors of MGA with K(i) values ranging from 6 to 75 microM.
- Published
- 2006
37. Synthesis, enzymatic activity, and X-ray crystallography of an unusual class of amino acids
- Author
-
Wang Chen, Douglas A. Kuntz, David R. Rose, B. Mario Pinto, Lyann Sim, and Tamika Hamlet
- Subjects
Magnetic Resonance Spectroscopy ,Glycoside Hydrolases ,Stereochemistry ,Clinical Biochemistry ,Pharmaceutical Science ,Golgi Apparatus ,Crystallography, X-Ray ,Biochemistry ,Chemical synthesis ,chemistry.chemical_compound ,Sugar Alcohols ,Salacia ,Drug Discovery ,Hydrolase ,Mannosidases ,Carbohydrate Conformation ,Animals ,Enzyme Inhibitors ,Molecular Biology ,chemistry.chemical_classification ,Binding Sites ,biology ,Chemistry ,Sulfates ,Hydrolysis ,Organic Chemistry ,Active site ,Stereoisomerism ,Oligosaccharide ,Ascorbic acid ,Recombinant Proteins ,Amino acid ,Enzyme ,Drosophila melanogaster ,Carbohydrate Sequence ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Aldonic acid ,biology.protein ,Molecular Medicine - Abstract
The synthesis of two novel amino acids, nitrogen analogues of the naturally occurring glycosidase inhibitor, salacinol, containing a carboxylate inner salt are described, along with the crystal structure of one of these analogues in the active site of Drosophila melanogaster Golgi mannosidase II (dGMII). Salacinol, a naturally occurring sulfonium ion, is one of the active principals in the aqueous extracts of Salacia reticulata that are traditionally used in Sri Lanka and India for the treatment of diabetes. The synthetic strategy relies on the nucleophilic attack of 2,3,5-tri- O -benzyl-1,4-dideoxy-1,4-imino l - or d -arabinitol at the least hindered carbon of 5,6-anhydro-2,3-di- O -benzyl- l -ascorbic acid to yield coupled adducts. Deprotection, stereoselective catalytic reduction, and hydrolysis of the coupled products give the target compounds. The compound derived from d -arabinitol inhibits dGMII, one of the critical enzymes in the glycoprotein processing pathway, with an IC 50 of 0.3 mM. Inhibition of GMII has been identified as a target for control of metastatic cancer. An X-ray crystal structure of the complex of this compound with dGMII provides insight into the requirements for an effective inhibitor. The same compound inhibits recombinant human maltase glucoamylase, one of the key intestinal enzymes involved in the breakdown of glucose oligosaccharides in the small intestine, with a K i value of 21 μM.
- Published
- 2006
38. T1731 Individual Mammalian Mucosal Glucosidase Subunits Digest Various Starch Structures Differently
- Author
-
Lyann Sim, Amy Hui-Mei Lin, Roberto Quezada-Calvillo, Buford L. Nichols, David R. Rose, and Bruce R. Hamaker
- Subjects
chemistry.chemical_compound ,Hepatology ,Biochemistry ,chemistry ,Starch ,Gastroenterology ,Biology - Published
- 2010
- Full Text
- View/download PDF
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