207,347 results on '"Maria, M."'
Search Results
2. The Advantages of Polarization Control in RABBITT
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Popova, Maria M., Yudin, Sergei N., Grum-Grzhimailo, Alexei N., and Gryzlova, Elena V.
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Physics - Atomic Physics - Abstract
The RABBITT setup is theoretically studied for various combinations of XUV and IR field components polarization: 'linear+linear', `linear+circular' with crossed propagation directions, and `circular+circular' with parallel propagation directions. The general properties of photoelectron angular distributions and their responses to the variation of the IR pulse delay are studied. Numerical simulations are performed for the neon valence shell ionization into the region of structureless continuum using two approaches based on time dependent perturbation theory and solution of rate equations. To distinguish between "geometrical" governed by fields' polarization and spectroscopic features, additional analysis for the case of $s$-shell ionization is presented., Comment: 10 pages, 5 figures; some references were misplaced in the first version + minor polishing
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- 2024
3. Disruption of a massive molecular cloud by a supernova in the Galactic Centre: Initial results from the ACES project
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Nonhebel, M., Barnes, A. T., Immer, K., Armijos-Abendaño, J., Bally, J., Battersby, C., Burton, M. G., Butterfield, N., Colzi, L., García, P., Ginsburg, A., Henshaw, J. D., Hu, Y., Jiménez-Serra, I., Klessen, R. S., Kruijssen, J. M. D., Liang, F. -H., Longmore, S. N., Lu, X., Martín, S., Mills, E. A. C., Nogueras-Lara, F., Petkova, M. A., Pineda, J. E., Rivilla, V. M., Sánchez-Monge, Á., Santa-Maria, M. G., Smith, H. A., Sofue, Y., Sormani, M. C., Tolls, V., Walker, D. L., Wallace, J., Wang, Q. D., Williams, G. M., and Xu, F. -W.
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Astrophysics - Astrophysics of Galaxies - Abstract
The Milky Way's Central Molecular Zone (CMZ) differs dramatically from our local solar neighbourhood, both in the extreme interstellar medium conditions it exhibits (e.g. high gas, stellar, and feedback density) and in the strong dynamics at play (e.g. due to shear and gas influx along the bar). Consequently, it is likely that there are large-scale physical structures within the CMZ that cannot form elsewhere in the Milky Way. In this paper, we present new results from the Atacama Large Millimeter/submillimeter Array (ALMA) large programme ACES (ALMA CMZ Exploration Survey) and conduct a multi-wavelength and kinematic analysis to determine the origin of the M0.8$-$0.2 ring, a molecular cloud with a distinct ring-like morphology. We estimate the projected inner and outer radii of the M0.8$-$0.2 ring to be 79" and 154", respectively (3.1 pc and 6.1 pc at an assumed Galactic Centre distance of 8.2 kpc) and calculate a mean gas density $> 10^{4}$ cm$^{-3}$, a mass of $\sim$ $10^6$ M$_\odot$, and an expansion speed of $\sim$ 20 km s$^{-1}$, resulting in a high estimated kinetic energy ($> 10^{51}$ erg) and momentum ($> 10^7$ M$_\odot$ km s$^{-1}$). We discuss several possible causes for the existence and expansion of the structure, including stellar feedback and large-scale dynamics. We propose that the most likely cause of the M0.8$-$0.2 ring is a single high-energy hypernova explosion. To viably explain the observed morphology and kinematics, such an explosion would need to have taken place inside a dense, very massive molecular cloud, the remnants of which we now see as the M0.8$-$0.2 ring. In this case, the structure provides an extreme example of how supernovae can affect molecular clouds., Comment: 17 pages, 13 figures, and 2 tables. Published in Astronomy & Astrophysics
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- 2024
4. Quartz Clouds in the Dayside Atmosphere of the Quintessential Hot Jupiter HD 189733 b
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Inglis, Julie, Batalha, Natasha E., Lewis, Nikole K., Kataria, Tiffany, Knutson, Heather A., Kilpatrick, Brian M., Gagnebin, Anna, Mukherjee, Sagnick, Pettyjohn, Maria M., Crossfield, Ian J. M., Foote, Trevor O., Grant, David, Henry, Gregory W., Lally, Maura, McKemmish, Laura K., Sing, David K., Wakeford, Hannah R., Trujillo, Juan C. Zapata, and Zellem, Robert T.
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Astrophysics - Earth and Planetary Astrophysics - Abstract
Recent mid-infrared observations with JWST/MIRI have resulted in the first direct detections of absorption features from silicate clouds in the transmission spectra of two transiting exoplanets, WASP-17 b and WASP-107 b. In this paper, we measure the mid-infrared ($5-12$ $\mu$m) dayside emission spectrum of the benchmark hot Jupiter HD 189733 b with MIRI LRS by combining data from two secondary eclipse observations. We confirm the previous detection of H$_2$O absorption at 6.5 $\mu$m from Spitzer/IRS and additionally detect H$_2$S as well as an absorption feature at 8.7 $\mu$m in both secondary eclipse observations. The excess absorption at 8.7 $\mu$m can be explained by the presence of small ($\sim$0.01 $\mu$m) grains of SiO$_2$[s] in the uppermost layers of HD 189733 b's dayside atmosphere. This is the first direct detection of silicate clouds in HD 189733 b's atmosphere, and the first detection of a distinct absorption feature from silicate clouds on the day side of any hot Jupiter. We find that models including SiO$_2$[s] are preferred by $6-7\sigma$ over clear models and those with other potential cloud species. The high altitude location of these silicate particles is best explained by formation in the hottest regions of HD 189733 b's dayside atmosphere near the substellar point. We additionally find that HD 189733 b's emission spectrum longward of 9 $\mu$m displays residual features not well captured by our current atmospheric models. When combined with other JWST observations of HD 189733 b's transmission and emission spectrum at shorter wavelengths, these observations will provide us with the most detailed picture to date of the atmospheric composition and cloud properties of this benchmark hot Jupiter., Comment: 21 pages, 7 Figures, 3 Tables, Accepted to ApJL
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- 2024
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5. Positive Effects of a 9-Week Programme on Fundamental Movement Skills of Rural School Children
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Mere Idamokoro, Anita E. Pienaar, Barry Gerber, and Maria M. van Gent
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Background: Motor development of many children in rural areas of South Africa is compromised because of various socio-economic factors, hence, the need to address these developmental needs. Aim: To examine the immediate and sustainable effects of a 9-week movement programme on fundamental movement skills (FMS) of school children. Setting: Seven to eight years old school children in Raymond Mhlaba Municipality, Eastern Cape province. Methods: A two-group, pre-post-re-test research design was used. Fundamental movement skills (FMS) proficiency was assessed using the Test of Gross Motor Development-Third Edition (TGMD-3) at pre-test, post-test and re-test after 6 months. Ninety-three school children (intervention group [IG] = 57) and (control group = 36), with a mean age of 7.12 (± 0.71) participated in the study. The twice-a-week FMS programme of 30 min was conducted during school hours. Statistical analysis included an ANOVA type of hierarchical linear model (HLM) (mixed models) procedure to test for intervention effects with school, time, sex and group as covariants. Cohen's effect size was calculated to assess the practical significance of changes. Results: Immediate and sustainable effects were found on locomotor (p < 0.05; d > 1.7, p < 0.05; d > 2.0), ball skills (p < 0.05; d > 0.7, p < 0.05; d > 1.5) and the gross motor index (GMI) of the IG (p < 0.05; d > 1.0, p < 0.05; d > 2.0). Conclusions: A short-duration FMS intervention significantly improve locomotor, ball skills, and GMI of school children in rural areas. Contributions: Interventions of this nature are encouraged to improve the FMS development of school children, especially in rural areas, as it can enhance the building blocks required in the future development of these children.
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- 2024
6. Gender differences in the association between education and late‐life cognitive function in the LifeAfter90 Study: A multiethnic cohort of the oldest–old
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Lam, Jennifer O, Whitmer, Rachel A, Corrada, Maria M, Kawas, Claudia H, Vieira, Katherine E, Quesenberry, Charles P, and Gilsanz, Paola
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Biological Psychology ,Cognitive and Computational Psychology ,Psychology ,Applied and Developmental Psychology ,Aging ,Alzheimer's Disease ,Behavioral and Social Science ,Basic Behavioral and Social Science ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Mental Health ,Women's Health ,Neurodegenerative ,Neurosciences ,Dementia ,Clinical Research ,Acquired Cognitive Impairment ,Brain Disorders ,Quality Education ,Gender Equality ,aging ,cognition ,cognitive function ,disparity ,education ,gender ,Clinical Sciences ,Geriatrics ,Clinical sciences ,Biological psychology - Abstract
IntroductionFew studies have examined the relationship between education and cognition among the oldest-old.MethodsCognitive assessments were conducted biannually for 803 participants (62.6% women) of LifeAfter90, a longitudinal study of individuals ≥ 90 years old. Gender differences in associations between education (
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- 2024
7. Contextual modulation of language comprehension in a dynamic neural model of lexical meaning
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Stern, Michael C. and Piñango, Maria M.
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Computer Science - Computation and Language - Abstract
We propose and computationally implement a dynamic neural model of lexical meaning, and experimentally test its behavioral predictions. We demonstrate the architecture and behavior of the model using as a test case the English lexical item 'have', focusing on its polysemous use. In the model, 'have' maps to a semantic space defined by two continuous conceptual dimensions, connectedness and control asymmetry, previously proposed to parameterize the conceptual system for language. The mapping is modeled as coupling between a neural node representing the lexical item and neural fields representing the conceptual dimensions. While lexical knowledge is modeled as a stable coupling pattern, real-time lexical meaning retrieval is modeled as the motion of neural activation patterns between metastable states corresponding to semantic interpretations or readings. Model simulations capture two previously reported empirical observations: (1) contextual modulation of lexical semantic interpretation, and (2) individual variation in the magnitude of this modulation. Simulations also generate a novel prediction that the by-trial relationship between sentence reading time and acceptability should be contextually modulated. An experiment combining self-paced reading and acceptability judgments replicates previous results and confirms the new model prediction. Altogether, results support a novel perspective on lexical polysemy: that the many related meanings of a word are metastable neural activation states that arise from the nonlinear dynamics of neural populations governing interpretation on continuous semantic dimensions.
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- 2024
8. Thermal Preconditioning of Membrane Stress to Control the Shapes of Ultrathin Crystals
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Wan, Hao, Jeon, Geunwoong, Grason, Gregory M., and Santore, Maria M.
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Condensed Matter - Soft Condensed Matter ,Condensed Matter - Materials Science - Abstract
We employ the phospholipid bilayer membranes of giant unilamellar vesicles as a free-standing environment for the growth of membrane-integrated ultrathin phospholipid crystals possessing a variety of shapes with 6-fold symmetry. Crystal growth within vesicle membranes, where more elaborate shapes grow on larger vesicles is dominated by the bending energy of the membrane itself, creating a means to manipulate crystal morphology. Here we demonstrate how cooling rate preconditions the membrane tension before nucleation, in turn regulating nucleation and growth, and directing the morphology of crystals by the time they are large enough to be visualized. The crystals retain their shapes during further growth through the two phase region. Experiments demonstrate this behavior for single crystals growing within the membrane of each vesicle, ultimately comprising up to 13% of the vesicle area and length scales of up to 50 microns. A model for stress evolution, employing only physical property data, reveals how the competition between thermal membrane contraction and water diffusion from tensed vesicles produces a size- and time-dependence of the membrane tension as a result of cooling history. The tension, critical in the contribution of bending energy in the fluid membrane regions, in turn selects for crystal shape for vesicles of a given size. The model reveals unanticipated behaviors including a low steady state tension on small vesicles that allows compact domains to develop, rapid tension development on large vesicles producing flower-shaped domains, and a stress relaxation through water diffusion across the membrane with a time constant scaling as the square of the vesicle radius, consistent with measurable tensions only in the largest vesicles., Comment: Main text 32 pages and 7 figures; SI 4 pages and 4 figures
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- 2024
9. Associations of Amyloid Burden, White Matter Hyperintensities, and Hippocampal Volume With Cognitive Trajectories in the 90+ Study
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Wang, Jingxuan, Ackley, Sarah, Woodworth, Davis C, Sajjadi, Seyed Ahmad, Decarli, Charles S, Fletcher, Evan F, Glymour, M Maria, Jiang, Luohua, Kawas, Claudia, and Corrada, Maria M
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Biomedical and Clinical Sciences ,Neurosciences ,Clinical Sciences ,Dementia ,Alzheimer's Disease Related Dementias (ADRD) ,Clinical Research ,Aging ,Acquired Cognitive Impairment ,Brain Disorders ,Vascular Cognitive Impairment/Dementia ,Neurodegenerative ,Alzheimer's Disease ,Behavioral and Social Science ,Biomedical Imaging ,Cerebrovascular ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,2.1 Biological and endogenous factors ,Neurological ,Humans ,Female ,Male ,White Matter ,Hippocampus ,Aged ,80 and over ,Longitudinal Studies ,Magnetic Resonance Imaging ,Cognitive Dysfunction ,Positron-Emission Tomography ,Cognition ,Cohort Studies ,Organ Size ,Ethylene Glycols ,Aniline Compounds ,Amyloid beta-Peptides ,Amyloid ,Cognitive Sciences ,Neurology & Neurosurgery ,Clinical sciences - Abstract
Background and objectivesAmyloid pathology, vascular disease pathology, and pathologies affecting the medial temporal lobe are associated with cognitive trajectories in older adults. However, only limited evidence exists on how these pathologies influence cognition in the oldest old. We evaluated whether amyloid burden, white matter hyperintensity (WMH) volume, and hippocampal volume (HV) are associated with cognitive level and decline in the oldest old.MethodsThis was a longitudinal, observational community-based cohort study. We included participants with 18F-florbetapir PET and MRI data from the 90+ Study. Amyloid load was measured using the standardized uptake value ratio in the precuneus/posterior cingulate with eroded white matter mask as reference. WMH volume was log-transformed. All imaging measures were standardized using sample means and SDs. HV and log-WMH volume were normalized by total intracranial volume using the residual approach. Global cognitive performance was measured by the Mini-Mental State Examination (MMSE) and modified MMSE (3MS) tests, repeated every 6 months. We used linear mixed-effects models with random intercepts; random slopes; and interaction between time, time squared, and imaging variables to estimate the associations of imaging variables with cognitive level and cognitive decline. Models were adjusted for demographics, APOE genotype, and health behaviors.ResultsThe sample included 192 participants. The mean age was 92.9 years, 125 (65.1%) were female, 71 (37.0%) achieved a degree beyond college, and the median follow-up time was 3.0 years. A higher amyloid load was associated with a lower cognitive level (βMMSE = -0.82, 95% CI -1.17 to -0.46; β3MS = -2.77, 95% CI -3.69 to -1.84). A 1-SD decrease in HV was associated with a 0.70-point decrease in the MMSE score (95% CI -1.14 to -0.27) and a 2.27-point decrease in the 3MS score (95% CI -3.40 to -1.14). Clear nonlinear cognitive trajectories were detected. A higher amyloid burden and smaller HV were associated with faster cognitive decline. WMH volume was not significantly associated with cognitive level or decline.DiscussionAmyloid burden and hippocampal atrophy are associated with both cognitive level and cognitive decline in the oldest old. Our findings shed light on how different pathologies contributed to driving cognitive function in the oldest old.
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- 2024
10. Characterizing Long COVID in Children and Adolescents
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Gross, Rachel S, Thaweethai, Tanayott, Kleinman, Lawrence C, Snowden, Jessica N, Rosenzweig, Erika B, Milner, Joshua D, Tantisira, Kelan G, Rhee, Kyung E, Jernigan, Terry L, Kinser, Patricia A, Salisbury, Amy L, Warburton, David, Mohandas, Sindhu, Wood, John C, Newburger, Jane W, Truong, Dongngan T, Flaherman, Valerie J, Metz, Torri D, Karlson, Elizabeth W, Chibnik, Lori B, Pant, Deepti B, Krishnamoorthy, Aparna, Gallagher, Richard, Lamendola-Essel, Michelle F, Hasson, Denise C, Katz, Stuart D, Yin, Shonna, Dreyer, Benard P, Carmilani, Megan, Coombs, K, Fitzgerald, Megan L, Güthe, Nick, Hornig, Mady, Letts, Rebecca J, Peddie, Aimee K, Taylor, Brittany D, Foulkes, Andrea S, Stockwell, Melissa S, Balaraman, Venkataraman, Bogie, Amanda, Bukulmez, Hulya, Dozor, Allen J, Eckrich, Daniel, Elliott, Amy J, Evans, Danielle N, Farkas, Jonathan S, Faustino, E Vincent S, Fischer, Laura, Gaur, Sunanda, Harahsheh, Ashraf S, Hasan, Uzma N, Hsia, Daniel S, Huerta-Montanez, Gredia, Hummel, Kathy D, Kadish, Matt P, Kaelber, David C, Krishnan, Sankaran, Kosut, Jessica S, Larrabee, Jerry, Lim, Peter Paul C, Michelow, Ian C, Oliveira, Carlos R, Raissy, Hengameh, Rosario-Pabon, Zaira, Ross, Judith L, Sato, Alice I, Stevenson, Michelle D, Talavera-Barber, Maria M, Teufel, Ronald J, Weakley, Kathryn E, Zimmerman, Emily, Bind, Marie-Abele C, Chan, James, Guan, Zoe, Morse, Richard E, Reeder, Harrison T, Akshoomoff, Natascha, Aschner, Judy L, Bhattacharjee, Rakesh, Cottrell, Lesley A, Cowan, Kelly, D'Sa, Viren A, Fiks, Alexander G, Gennaro, Maria L, Irby, Katherine, Khare, Manaswitha, Landeo Guttierrez, Jeremy, McCulloh, Russell J, Narang, Shalu, Ness- Cochinwala, Manette, Nolan, Sheila, Palumbo, Paul, Ryu, Julie, Salazar, Juan C, Selvarangan, Rangaraj, Stein, Cheryl R, Werzberger, Alan, Zempsky, William T, Aupperle, Robin, and Baker, Fiona C
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Biomedical and Clinical Sciences ,Clinical Sciences ,Health Sciences ,Emerging Infectious Diseases ,Neurosciences ,Coronaviruses ,Infectious Diseases ,Pediatric ,Minority Health ,Pain Research ,Infection ,Good Health and Well Being ,RECOVER-Pediatrics Consortium ,RECOVER-Pediatrics Group Authors ,Medical and Health Sciences ,General & Internal Medicine ,Biomedical and clinical sciences ,Health sciences - Abstract
ImportanceMost research to understand postacute sequelae of SARS-CoV-2 infection (PASC), or long COVID, has focused on adults, with less known about this complex condition in children. Research is needed to characterize pediatric PASC to enable studies of underlying mechanisms that will guide future treatment.ObjectiveTo identify the most common prolonged symptoms experienced by children (aged 6 to 17 years) after SARS-CoV-2 infection, how these symptoms differ by age (school-age [6-11 years] vs adolescents [12-17 years]), how they cluster into distinct phenotypes, and what symptoms in combination could be used as an empirically derived index to assist researchers to study the likely presence of PASC.Design, setting, and participantsMulticenter longitudinal observational cohort study with participants recruited from more than 60 US health care and community settings between March 2022 and December 2023, including school-age children and adolescents with and without SARS-CoV-2 infection history.ExposureSARS-CoV-2 infection.Main outcomes and measuresPASC and 89 prolonged symptoms across 9 symptom domains.ResultsA total of 898 school-age children (751 with previous SARS-CoV-2 infection [referred to as infected] and 147 without [referred to as uninfected]; mean age, 8.6 years; 49% female; 11% were Black or African American, 34% were Hispanic, Latino, or Spanish, and 60% were White) and 4469 adolescents (3109 infected and 1360 uninfected; mean age, 14.8 years; 48% female; 13% were Black or African American, 21% were Hispanic, Latino, or Spanish, and 73% were White) were included. Median time between first infection and symptom survey was 506 days for school-age children and 556 days for adolescents. In models adjusted for sex and race and ethnicity, 14 symptoms in both school-age children and adolescents were more common in those with SARS-CoV-2 infection history compared with those without infection history, with 4 additional symptoms in school-age children only and 3 in adolescents only. These symptoms affected almost every organ system. Combinations of symptoms most associated with infection history were identified to form a PASC research index for each age group; these indices correlated with poorer overall health and quality of life. The index emphasizes neurocognitive, pain, and gastrointestinal symptoms in school-age children but change or loss in smell or taste, pain, and fatigue/malaise-related symptoms in adolescents. Clustering analyses identified 4 PASC symptom phenotypes in school-age children and 3 in adolescents.Conclusions and relevanceThis study developed research indices for characterizing PASC in children and adolescents. Symptom patterns were similar but distinguishable between the 2 groups, highlighting the importance of characterizing PASC separately for these age ranges.
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- 2024
11. Observation and manipulation of charge carrier distribution at the SiO$_2$/Si interface
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Martins, Maria M., Kumar, Piyush, Bathen, Marianne E., Salman, Zaher, Grossner, Ulrike, and Prokscha, Thomas
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Condensed Matter - Other Condensed Matter ,Physics - Applied Physics - Abstract
Using low-energy muons, we map the charge carrier concentration as a function of depth and electric field across the \SiOSi interface up to a depth of \SI{100}{\nano\meter} in Si-based MOS capacitors. The results show that the formation of the anisotropic bond-centered muonium \MuBCz state in Si serves as a direct measure of the local changes in electronic structures. Different band-bending conditions could be distinguished, and the extension of the depletion width was directly extracted using the localized stopping and probing depth of the muons. Furthermore, electron build-up on the Si side of the \SiOO/Si interface, caused by the mirror charge induced by the fixed positive charge in the oxide and the image force effect, was observed. Our work represents a significant extension of the application of the muon spin rotation technique ($\mu$SR) and lays the foundation for further research on direct observation of charge carrier density manipulation at technologically important semiconductor device interfaces.
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- 2024
12. Shape equilibria of vesicles with rigid planar inclusions
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Jeon, Geunwoong, Fagnoni, Justin, Wan, Hao, Santore, Maria M., and Grason, Gregory M.
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Condensed Matter - Soft Condensed Matter ,Condensed Matter - Materials Science - Abstract
Motivated by recent studies of two-phase lipid vesicles possessing 2D solid domains integrated within a fluid bilayer phase, we study the shape equilibria of closed vesicles possessing a single planar, circular inclusion. While 2D solid elasticity tends to expel Gaussian curvature, topology requires closed vesicles to maintain an average, non-zero Gaussian curvature leading to an elementary mechanism of shape frustration that increases with inclusion size. We study elastic ground states of the Helfrich model of the planar-fluid composite vesicles, analytically and computationally, as a function of planar fraction and reduced volume. Notably, we show that incorporation of a planar inclusion of only a few percent dramatically shifts the ground state shapes of vesicles from predominantly {\it prolate} to {\it oblate}, and moreover, shifts the optimal surface to volume ratio far from spherical shapes. We show that for sufficiently small planar inclusions, the elastic ground states break symmetry via a complex variety of asymmetric oblate, prolate, and triaxial shapes, while inclusion sizes above about $8\%$ drive composite vesicles to adopt axisymmetric oblate shapes. These predictions cast useful light on the emergent shape and mechanical responses of fluid-solid composite vesicles., Comment: 15 pages, 13 figures, 3 appendices
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- 2024
13. Section 504 Plans: Examining Inequitable Access and Misuse
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University of Colorado at Boulder, National Education Policy Center (NEPC), Lewis, Maria M., and Muñiz, Raquel
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When either privileged or under-resourced families navigate gray areas in the law, including federal laws related to students with disabilities such as Section 504 of the Rehabilitation Act, inequities are revealed. Research and emerging trends have raised increasing concerns about unfairness and abuses of disability policies, particularly with regard to intersectional disadvantages and advantages that may emerge in the implementation of Section 504, depending on a student's social identities. In this policy brief, the authors present research that should inform policymaking around Section 504. They also consider the trends documenting ongoing and even increasing inequities in how the law is being used. Because many of these inequities are systemic, they provide recommendations that include policy actions at the federal, state, and local levels.
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- 2023
14. High specificity but low sensitivity of lab-on-a-disk technique in detecting soil-transmitted helminth eggs among pre- and school-aged children in North-Western Tanzania
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Mazigo, Humphrey D, Justine, Nyanda C, Bhuko, Jeffer, Rubagumya, Sarah, Basinda, Namanya, Zinga, Maria M, Ruganuza, Deodatus, Misko, Vyacheslav R, Briet, Matthieu, Legein, Filip, and De Malsche, Wim
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- 2024
15. Glutamylation imbalance impairs the molecular architecture of the photoreceptor cilium
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Mercey, Olivier, Gadadhar, Sudarshan, Magiera, Maria M, Lebrun, Laura, Kostic, Corinne, Moulin, Alexandre, Arsenijevic, Yvan, Janke, Carsten, Guichard, Paul, and Hamel, Virginie
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- 2024
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16. Acceptance of emerging renal oncocytic neoplasms: a survey of urologic pathologists
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Mohanty, Sambit K., Lobo, Anandi, Jha, Shilpy, Sangoi, Ankur R., Akgul, Mahmut, Trpkov, Kiril, Hes, Ondrej, Mehra, Rohit, Hirsch, Michelle S., Moch, Holger, Smith, Steven C., Shah, Rajal B., Cheng, Liang, Amin, Mahul B., Epstein, Jonathan I., Parwani, Anil V., Delahunt, Brett, Desai, Sangeeta, Przybycin, Christopher G., Manini, Claudia, Luthringer, Daniel J., Sirohi, Deepika, Jain, Deepika, Midha, Divya, Jain, Ekta, Maclean, Fiona, Giannico, Giovanna A., Paner, Gladell P., Martignoni, Guido, Al-Ahmadie, Hikmat A., McKenney, Jesse, Srigley, John R., Lopez, Jose Ignacio, Kunju, L. Priya, Browning, Lisa, Aron, Manju, Picken, Maria M., Tretiakova, Maria, Zhou, Ming, Sable, Mukund, Kuroda, Naoto, Pattnaik, Niharika, Gupta, Nilesh S., Rao, Priya, Fine, Samson W., Mishra, Pritinanda, Adhya, Amit K., Kulkarni, Bijal N., Dixit, Mallika, Baisakh, Manas R., Arora, Samriti, Sancheti, Sankalp, Menon, Santosh, Wobker, Sara E., Tickoo, Satish K., Kaushal, Seema, Soni, Shailesh, Kandukuri, Shivani, Sharma, Shivani, Mitra, Suvradeep, Reuter, Victor E., Malik, Vipra, Rao, Vishal, Chen, Ying-Bei, and Williamson, Sean R.
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- 2024
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17. Sleep Characteristics Among Children with a Parental History of Alcohol Use Disorder
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Wong, Maria M. and Hillebrant-Openshaw, Madisen
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- 2024
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18. The impact of design and operational parameters on the optimal performance of direct air capture units using solid sorbents
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Ward, Adam, Papathanasiou, Maria M., and Pini, Ronny
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- 2024
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19. Molecular identification of Sarcocystis aucheniae in the wild South American camelid Vicugna vicugna
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Wieser, Sarah N., Cafrune, Maria M., Romero, Sandra R., Schnittger, Leonhard, and Florin-Christensen, Monica
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- 2024
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20. Enhancing soil health and carbon sequestration through phytogenic treatment: insights into microbial functional pathways in pasture dieback affected soil
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Ren, Xipeng, Whitton, Maria M., Trotter, Tieneke, Ashwath, Nanjappa, Stanley, Dragana, and Bajagai, Yadav S.
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- 2024
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21. Antibiotic Residues and Zinc Concentrations in the Livers and Kidneys of Portuguese Piglets—Relationship to Antibiotic and Zinc Resistance in Intestinal Escherichia coli
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Cardoso, Olga, Assis, Gabriela, Donato, Maria M., Henriques, Sara Carolina, Freitas, Andreia, and Ramos, Fernando
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- 2024
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22. Zooming in on what counts as core and auxiliary: A case study on recognition models of visual working memory
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Robinson, Maria M., Williams, Jamal R., Wixted, John T., and Brady, Timothy F.
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- 2024
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23. Local but not global graph theoretic measures of semantic networks generalize across tasks
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Robinson, Maria M., DeStefano, Isabella C., Vul, Edward, and Brady, Timothy F.
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- 2024
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24. Bending Energy-Driven Cooperative Patterning of 2D Colloids in Elastic 2D Fluids
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Xin, Weiyue and Santore, Maria M.
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Physics - Applied Physics ,Condensed Matter - Materials Science - Abstract
Suspensions of colloidal microplates in contoured 2D elastic fluids sheets are dominated by the bending mechanics and shear rigidity of the plates and the contrasting in-plane shear flow of the 2D fluid. Using the phase separated phospholipid membranes of individual giant unilamellar vesicles as models of contoured 2D suspensions, where solid domains act as colloids in a fluid membrane, we explore bending elasticity-driven assembly. The plate-shaped domains are varied between 1-10 {\mu}m in diameter, with 4-100 plates per vesicle depending on size, contributing a solid area of 17 plus minus 3%. Three classes of reversible plate arrangements evidence inter-plate attractions and repulsions: persistent hexagonal vesicle-encompassing quasi-lattices, persistent closely associated configurations (chains or concentrated lattices), and a dynamic disordered state. The vesicle-encompassing quasi-lattice is stable to vesicle dehydration by 30% relative to an inflated sphere. Excess area or membrane slack, for a fixed composition, dominates the preferred configuration while domain size and number contribute pattern intricacy. Different from the gradual variations in domain interactions and tunable positions in two-colloid systems, multibody interactions vary sharply within a particular range of excess area, producing cooperative assembly reminiscent of a phase transition.
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- 2024
25. The Madrid-2019 force field for electrolytes in water using TIP4P/2005 and scaled charges: extension to the ions F$^-$, Br$^-$, I$^-$, Rb$^+$, Cs$^+$
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Blazquez, Samuel, Conde, Maria M., Abascal, Jose L. F., and Vega, Carlos
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Physics - Chemical Physics - Abstract
In this work, an extension of the Madrid-2019 force field is presented. We have added the cations Rb + and Cs + and the anions F$^-$, Br$^-$ and I$^-$. These ions were the remaining alkaline and halogen ions not previously considered in the Madrid-2019 force field. The force field, denoted as Madrid-2019-Extended, does not include polarizability, and uses the TIP4P/2005 model of water and scaled charges for the ions. A charge of 0.85 e is assigned to monovalent ions. The force field developed provides an accurate description of the aqueous solution densities over a wide range of concentrations up to the solubility limit of each salt studied. Good predictions of viscosity and diffusion coefficients are obtained for concentrations below 2 m. Structural properties obtained with this force field are also in reasonable agreement with the experiment. The number of contact ion pairs has been controlled to be low so as to avoid precipitation of the system at concentrations close to the experimental solubility limit. A comprehensive comparison of the performance for aqueous solutions of alkaline halides of force fields of electrolytes using scaled and integer charges is now possible. This comparison will help in the future to learn about the benefits and limitations of the use of scaled charges to describe electrolyte solutions.
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- 2024
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26. Deep learning enhanced mixed integer optimization: Learning to reduce model dimensionality
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Triantafyllou, Niki and Papathanasiou, Maria M.
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Mathematics - Optimization and Control ,Computer Science - Artificial Intelligence ,Computer Science - Machine Learning - Abstract
This work introduces a framework to address the computational complexity inherent in Mixed-Integer Programming (MIP) models by harnessing the potential of deep learning. By employing deep learning, we construct problem-specific heuristics that identify and exploit common structures across MIP instances. We train deep learning models to estimate complicating binary variables for target MIP problem instances. The resulting reduced MIP models are solved using standard off-the-shelf solvers. We present an algorithm for generating synthetic data enhancing the robustness and generalizability of our models across diverse MIP instances. We compare the effectiveness of (a) feed-forward neural networks (ANN) and (b) convolutional neural networks (CNN). To enhance the framework's performance, we employ Bayesian optimization for hyperparameter tuning, aiming to maximize the occurrence of global optimum solutions. We apply this framework to a flow-based facility location allocation MIP formulation that describes long-term investment planning and medium-term tactical scheduling in a personalized medicine supply chain.
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- 2024
27. A Union's and University's Responses to Violence against a Woman Professor: Neoliberal Restructuring, Hypermasculinity, Male Privilege and Hegemonic Inequality
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Maria M. Majerski
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Although Eastern Canadian liberal arts universities are portrayed as progressive work environments that cultivate inclusivity and diversity, the corporatisation of these public spaces has transformed them from institutions that once encouraged pluralism and acceptance among all social groups to spaces that unevenly distribute privileges among faculty and students based on ascribed characteristics, social class, and adherence to cisnormative and heteronormative expectations. Under neoliberal reforms, universities and unions adopt their own policies and procedures that legitimate institutional power abuse over marginalised women Contract Limited Term (CLT) assistant professors. Using material evidence from complaints filed with a province's Human Rights Commission and Labour Board, this critical autoethnographic case study explores the institutionalised responses to a disenfranchised woman CLT's discrimination and harassment by a student, departmental chair, faculty and university staff. A theory of genocidal mobbing is developed to conceptualise the organisational processes and practices that maintain the status quo of white heteropatriarchy and disentitle women CLTs to safety, equality and fair representation by their unions. Genocidal mobbing is efficient, because misogynistic administrators only require weaponising one disgruntled student, and effective, because administrators utilise the most fatal and insidious of gendered narcissistic abuse: "gaslighting." The current neoliberal climate within academia puts marginalised women faculty at increased risk of genocidal mobbing from those with institutional power and from students with ethnic/racial and/or economic privilege. This article illuminates the union's culpability in the genocidal mobbing of women CLTs disenfranchised by multiple marginalised intersectional identities. Implications for future research and on policy are presented.
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- 2024
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28. Assessment of associations between neutrophil extracellular trap biomarkers in blood and thrombi in acute ischemic stroke patients
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Baumann, Tristan, de Buhr, Nicole, Blume, Nicole, Gabriel, Maria M., Ernst, Johanna, Fingerhut, Leonie, Imker, Rabea, Abu-Fares, Omar, Kühnel, Mark, Jonigk, Danny D., Götz, Friedrich, Falk, Christine, Weissenborn, Karin, Grosse, Gerrit M., and Schuppner, Ramona
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- 2024
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29. Ataxia-telangiectasia in Latin America: clinical features, immunodeficiency, and mortality in a multicenter study
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Pereira, Renan A., Dantas, Ellen O., Loekmanwidjaja, Jessica, Mazzucchelli, Juliana T. L., Aranda, Carolina S., Serrano, Maria E. G., De La Cruz Córdoba, Elisabeth A., Bezrodnik, Liliana, Moreira, Ileana, Ferreira, Janaira F. S., Dantas, Vera M., Sales, Valéria S. F., Fernandez, Carmen C., Vilela, Maria M. S., Motta, Isabela P., Franco, Jose Luis, Arango, Julio Cesar Orrego, Álvarez-Álvarez, Jesús A., Cardozo, Lina Rocío Riaño, Orellana, Julio C., Condino-Neto, Antonio, Kokron, Cristina M., Barros, Myrthes T., Regairaz, Lorena, Cabanillas, Diana, Suarez, Carmen L. N., Rosario, Nelson A., Chong-Neto, Herberto J., Takano, Olga A., Nadaf, Maria I. S. V., Moraes, Lillian S. L., Tavares, Fabiola S., Rabelo, Flaviane, Pino, Jessica, Calderon, Wilmer C., Mendoza-Quispe, Daniel, Goudouris, Ekaterini S., Patiño, Virginia, Montenegro, Cecilia, Souza, Monica S., Branco, Aniela BXCCastelo, Forte, Wilma C. N., Carvalho, Flavia A. A., Segundo, Gesmar, Cheik, Marina F. A., Roxo-Junior, Persio, Peres, Maryanna, Oliveira, Annie M., Neto, Arnaldo C. P., Ortega-López, Maria Claudia, Lozano, Alejandro, Lozano, Natalia Andrea, Nieto, Leticia H., Grumach, Anete S., Costa, Daniele C., Antunes, Nelma M. N., Nudelman, Victor, Pereira, Camila T. M., Martinez, Maria D. M., Quiroz, Francisco J. R., Cardona, Aristoteles A., Nuñez-Nuñez, Maria E., Rodriguez, Jairo A., Cuellar, Célia M., Vijoditz, Gustavo, Bichuetti-Silva, Daniélli C., Prando, Carolina C. M., Amantéa, Sérgio L., and Costa-Carvalho, Beatriz T.
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- 2024
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30. Virtual reality reusable e-resources for clinical skills training: a mixed-methods evaluation
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Pears, Matthew, Antoniou, Panagiotis E., Schiza, Eirini, Ntakakis, Georgios, Henderson, James, Frangoudes, Fotos, Nikolaidou, Maria M., Gkougkoudi, Evangelia, Pattichis, Constantinos S., Bamidis, Panagiotis D., and Konstantinidis, Stathis Th.
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- 2024
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31. Yield and clinical impact of image-guided bone biopsy in osteomyelitis of the appendicular skeleton: a systematic review and meta-analysis
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Smayra, Karen, Miangul, Shahid, Witkowiak, Maria M., Persson, Linn K. M., Lugard, Emily E., Adra, Maamoun, Yap, Nathanael Q. E., Ball, Jake, Nakanishi, Hayato, Than, Christian A., and Khoo, Michael
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- 2024
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32. Landscape of global urban environmental resistome and its association with local socioeconomic and medical status
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Wu, Jun, Hu, Yige, Perlin, Michael H., Danko, David, Lu, Jun, Oliveira, Manuela, Werner, Johannes, Zambrano, Maria M., Sierra, Maria A., Osuolale, Olayinka O., Łabaj, Paweł, Rascovan, Nicolás, Hazrin-Chong, Nur Hazlin, Jang, Soojin, Suzuki, Haruo, Nieto-Caballero, Marina, Prithiviraj, Bharath, Lee, Patrick K. H., Chmielarczyk, Agnieszka, Różańska, Anna, Zhao, Yongxiang, Wang, Lan, Mason, Christopher E., and Shi, Tieliu
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- 2024
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33. Effects of proactive healthcare on pain, physical and activities of daily living functioning in vulnerable older adults with chronic pain: a pragmatic clinical trial with one- and two-year follow-up
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Dong, Huan-Ji, Peolsson, Anneli, and Johansson, Maria M.
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- 2024
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34. The Mediating Role of Sleep Quality, Regularity, and Insomnia on the Relationship Between Adverse Childhood Experiences and Resilience
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Hillebrant-Openshaw, Madisen J. and Wong, Maria M.
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- 2024
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35. Interfacial properties of asphaltene–brine systems and analysis of adsorption kinetics: effects of ion and water injection for EOR
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Francisco, Agatha Densy S., Santos, David C., Santos, Maria M. C., Cavadas, Leandro A., Mehl, Ana, and Couto, Paulo
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- 2024
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36. $R$-dependence of jet observables with JEWEL+v-USPhydro
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Barreto, Leonardo, Canedo, Fabio M., Paulino, Maria M. M., Noronha-Hostler, Jacquelyn, Noronha, Jorge, and Munhoz, Marcelo G.
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Nuclear Theory ,High Energy Physics - Phenomenology - Abstract
The $R$-dependence of jet observables provides a new tool in understanding the interplay between the jet energy-loss mechanism and medium response in heavy-ion collisions. This work applies the Monte Carlo events generator JEWEL and PYTHIA, coupled with $\rm T_{R}ENTo$ initial conditions and the state-of-the-art (2+1)D v-USPhydro, for the simulation of jet distributions and substructure observables for lead-lead collisions at LHC energy scales. We present the jet nuclear modification $R_{AA}$ and anisotropic flow coefficients $v_{n=2,3}$ varying the jet cone radius $R$, in the context of anti-$k_T$ jets, in addition to leading subjet fragmentation. The calculations indicate the impacts of the hydrodynamic evolution and weakly-coupled medium response, given by recoils, on the distributions. Results are compared to experimental data in a wide range of jet $p_T$ and collision centrality, and displayed along large jets ($R \ge 0.6$) predictions., Comment: 6 pages, 4 figures, contribution to the proceedings of the 11th International Conference on Hard and Electromagnetic Probes of High-Energy Nuclear Collisions (Hard Probes 2023), Aschaffenburg (Germany), March 26-31, 2023. Submitted to PoS
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- 2023
37. HCN emission from translucent gas and UV-illuminated cloud edges revealed by wide-field IRAM 30m maps of Orion B GMC: Revisiting its role as tracer of the dense gas reservoir for star formation
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Santa-Maria, M. G., Goicoechea, J. R., Pety, J., Gerin, M., Orkisz, J. H., Petit, F. Le, Einig, L., Palud, P., Magalhaes, V. de Souza, Bešlić, I., Segal, L., Bardeau, S., Bron, E., Chainais, P., Chanussot, J., Gratier, P., Guzmán, V. V., Hughes, A., Languignon, D., Levrier, F., Lis, D. C., Liszt, H. S., Bourlot, J. Le, Oya, Y., Öberg, K., Peretto, N., Roueff, E., Roueff, A., Sievers, A., Thouvenin, P. -A., and Yamamoto, S.
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Astrophysics - Astrophysics of Galaxies - Abstract
We present 5 deg^2 (~250 pc^2) HCN, HNC, HCO+, and CO J=1-0 maps of the Orion B GMC, complemented with existing wide-field [CI] 492 GHz maps, as well as new pointed observations of rotationally excited HCN, HNC, H13CN, and HN13C lines. We detect anomalous HCN J=1-0 hyperfine structure line emission almost everywhere in the cloud. About 70% of the total HCN J=1-0 luminosity arises from gas at A_V < 8 mag. The HCN/CO J=1-0 line intensity ratio shows a bimodal behavior with an inflection point at A_V < 3 mag typical of translucent gas and UV-illuminated cloud edges. We find that most of the HCN J=1-0 emission arises from extended gas with n(H2) ~< 10^4 cm^-3, even lower density gas if the ionization fraction is > 10^-5 and electron excitation dominates. This result explains the low-A_V branch of the HCN/CO J=1-0 intensity ratio distribution. Indeed, the highest HCN/CO ratios (~0.1) at A_V < 3 mag correspond to regions of high [CI] 492 GHz/CO J=1-0 intensity ratios (>1) characteristic of low-density PDRs. Enhanced FUV radiation favors the formation and excitation of HCN on large scales, not only in dense star-forming clumps. The low surface brightness HCN and HCO+ J=1-0 emission scale with I_FIR (a proxy of the stellar FUV radiation field) in a similar way. Together with CO J=1-0, these lines respond to increasing I_FIR up to G0~20. On the other hand, the bright HCN J=1-0 emission from dense gas in star-forming clumps weakly responds to I_FIR once the FUV radiation field becomes too intense (G0>1500). The different power law scalings (produced by different chemistries, densities, and line excitation regimes) in a single but spatially resolved GMC resemble the variety of Kennicutt-Schmidt law indexes found in galaxy averages. As a corollary for extragalactic studies, we conclude that high HCN/CO J=1-0 line intensity ratios do not always imply the presence of dense gas., Comment: accepted for publication in A&A. 24 pages, 18 figures, plus Appendix. Abridged Abstract
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- 2023
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38. Neuropathologic Burden and Dementia in Nonagenarians and Centenarians
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Cholerton, Brenna, Latimer, Caitlin S, Crane, Paul K, Corrada, Maria M, Gibbons, Laura E, Larson, Eric B, Kawas, Claudia H, Keene, C Dirk, and Montine, Thomas J
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Biomedical and Clinical Sciences ,Neurosciences ,Clinical Sciences ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Brain Disorders ,Cerebrovascular ,Alzheimer's Disease ,Dementia ,Neurodegenerative ,Acquired Cognitive Impairment ,Aging ,2.1 Biological and endogenous factors ,Neurological ,Aged ,80 and over ,Humans ,Alzheimer Disease ,Brain ,Centenarians ,Nonagenarians ,Nervous System Diseases ,Cognitive Sciences ,Neurology & Neurosurgery ,Clinical sciences - Abstract
Background and objectivesThe aim of this study was to compare 2 large clinicopathologic cohorts of participants aged 90+ and to determine whether the association between neuropathologic burden and dementia in these older groups differs substantially from those seen in younger-old adults.MethodsAutopsied participants from The 90+ Study and Adult Changes in Thought (ACT) Study community-based cohort studies were evaluated for dementia-associated neuropathologic changes. Associations between neuropathologic variables and dementia were assessed using logistic or linear regression, and the weighted population attributable fraction (PAF) per type of neuropathologic change was estimated.ResultsThe 90+ Study participants (n = 414) were older (mean age at death = 97.7 years) and had higher amyloid/tau burden than ACT
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- 2024
39. Potential Effects of Long-Term Exposure to Air Pollution on Dementia: A Longitudinal Analysis in American Indians Aged 55 Years and Older
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Zhu, Yachen, Shi, Yuxi, Bartell, Scott M, Corrada, Maria M, Manson, Spero M, O’Connell, Joan, and Jiang, Luohua
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Epidemiology ,Environmental Sciences ,Pollution and Contamination ,Health Sciences ,Acquired Cognitive Impairment ,Prevention ,Aging ,Brain Disorders ,Clinical Research ,American Indian or Alaska Native ,Climate-Related Exposures and Conditions ,Dementia ,Rural Health ,Toxicology - Abstract
(1) Background: American Indians are disproportionately affected by air pollution, an important risk factor for dementia. However, few studies have investigated the effects of air pollution on the risk of dementia among American Indians. (2) Methods: This retrospective cohort study included a total of 26,871 American Indians who were 55+ years old in 2007, with an average follow-up of 3.67 years. County-level average air pollution data were downloaded from land-use regression models. All-cause dementia was identified using ICD-9 diagnostic codes from the Indian Health Service’s (IHS) National Data Warehouse and related administrative databases. Cox models were employed to examine the association of air pollution with dementia incidence, adjusting for co-exposures and potential confounders. (3) Results: The average PM2.5 levels in the IHS counties were lower than those in all US counties, while the mean O3 levels in the IHS counties were higher than the US counties. Multivariable Cox regressions revealed a positive association between dementia and county-level O3 with a hazard ratio of 1.24 (95% CI: 1.02–1.50) per 1 ppb standardized O3. PM2.5 and NO2 were not associated with dementia risk after adjusting for all covariates. (4) Conclusions: O3 is associated with a higher risk of dementia among American Indians.
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- 2024
40. How does the sensory-motor brain integrate and give rise to cognition and learning?
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Schöner, Gregor, Trifonova, Iliyana, Spencer, John, Piñango, Maria M, Shaw, Jason A., Stern, Michael C., Buss, Aaron, Samuelson, Larissa K, and Borst, Jelmer
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Language learning ,Language understanding ,Speech recognition ,Dynamic Systems Modeling ,Neural Networks - Abstract
The brain evolved as a sensory-motor machine that drives behavior while being linked to the world through sensors. Human cognition abstracts from these sensory-motor roots but retains intimate ties. The brain's structure reflects this history. How do neural processes at different distances from the sensory and motor surfaces integrate to achieve meaningful and grounded cognition? This is a challenge given the time-continuous and graded nature of sensory-motor processing, which enables continuous online updating. It is also a major challenge to understanding development and autonomous learning, in which the coupling across functional boundaries evolves under the influence of online activation patterns.
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- 2024
41. Linear Word Order Modulates the Cost of Metonymy Comprehension: Dynamics of Conceptual Composition
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Borneo, Maria Teresa and Piñango, Maria M
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Linguistics ,Cognitive architectures ,Event cognition ,Language understanding ,Semantics ,Knowledge representation ,Statistics - Abstract
We investigate the relation between conceptual and syntactic structure by focusing on the phenomenon of circumstantial metonymy e.g., “Table #6 wants another pizza”. We hypothesize that the construal of a metonymic interpretation is facilitated when the metonymized argument e.g., “Table #6” is retrieved before the metonymy-trigger e.g., “wants”, since this gives the processor more time to build the event structure that metonymy demands. This predicts greater cost of metonymy composition when the argument is in object position (after the trigger) relative to subject position (before the trigger). An acceptability task shows a main effect of metonymy for both syntactic positions. A self-paced reading task demonstrates a cost for metonymy only in object position. This indicates that the cost of metonymy composition is rooted in the requirement that the conceptual structure for the metonymic argument be fully retrieved, a process constrained by the order of lexical retrieval provided by syntactic structure.
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- 2024
42. Diagnostic yield of dental radiography and digital tomosynthesis for the identification of anatomic structures in cats
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Soltero-Rivera, Maria M, Nguyen, Richard, Goldschmidt, Stephanie Lynne, Hatcher, David C, and Arzi, Boaz
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Veterinary Sciences ,Agricultural ,Veterinary and Food Sciences ,Bioengineering ,Prevention ,cats ,dental radiography ,dentition ,digital tomosynthesis ,imaging ,oral anatomy ,Veterinary sciences - Abstract
IntroductionDigital tomosynthesis (DT) has emerged as a potential imaging modality for evaluating anatomic structures in veterinary medicine. This study aims to validate the diagnostic yield of DT in identifying predefined anatomic structures in feline cadaver heads, comparing it with conventional intraoral dental radiography (DR).MethodsA total of 16 feline cadaver heads were utilized to evaluate 19 predefined clinically relevant anatomic structures using both DR and DT. A semi-quantitative scoring system was employed to characterize the ability of each imaging method to identify these structures.ResultsDT demonstrated a significantly higher diagnostic yield compared to DR for all evaluated anatomic structures. Orthogonal DT imaging identified 13 additional anatomic landmarks compared to a standard 10-view feline set obtained via DR. Moreover, DT achieved statistically significant higher scores for each of these landmarks, indicating improved visualization over DR.DiscussionThese findings validate the utility of DT technology in reliably identifying clinically relevant anatomic structures in the cat skull. This validation serves as a foundation for further exploration of DT imaging in detecting dentoalveolar and other maxillofacial bony lesions and pathologies in cats.
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- 2024
43. Subtleties in Clathrin heavy chain binding boxes provide selectivity among adaptor proteins of budding yeast
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Lucas A. Defelipe, Katharina Veith, Osvaldo Burastero, Tatiana Kupriianova, Isabel Bento, Michal Skruzny, Knut Kölbel, Charlotte Uetrecht, Roland Thuenauer, and Maria M. García-Alai
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Science - Abstract
Abstract Clathrin forms a triskelion, or three-legged, network that regulates cellular processes by facilitating cargo internalization and trafficking in eukaryotes. Its N-terminal domain is crucial for interacting with adaptor proteins, which link clathrin to the membrane and engage with specific cargo. The N-terminal domain contains up to four adaptor-binding sites, though their role in preferential occupancy by adaptor proteins remains unclear. In this study, we examine the binding hierarchy of adaptors for clathrin, using integrative biophysical and structural approaches, along with in vivo functional experiments. We find that yeast epsin Ent5 has the highest affinity for clathrin, highlighting its key role in cellular trafficking. Epsins Ent1 and Ent2, crucial for endocytosis but thought to have redundant functions, show distinct binding patterns. Ent1 exhibits stronger interactions with clathrin than Ent2, suggesting a functional divergence toward actin binding. These results offer molecular insights into adaptor protein selectivity, suggesting they competitively bind clathrin while also targeting three different clathrin sites.
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- 2024
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44. Characteristics of autosomal dominant WFS1-associated optic neuropathy and its comparability to OPA1-associated autosomal dominant optic atrophy
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Cansu de Muijnck, Lonneke Haer-Wigman, Judith A. M. van Everdingen, Tanya Lushchyk, Pam A. T. Heutinck, Marieke F. van Dooren, Anneke J. A. Kievit, Virginie J. M. Verhoeven, Marleen E. H. Simon, Rosemarie A. Wasmann, Irene C. Notting, Elfride De Baere, Sophie Walraedt, Julie De Zaeytijd, Filip Van den Broeck, Bart P. Leroy, Camiel J. F. Boon, and Maria M. van Genderen
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WFS1 ,Optic atrophy ,OPA1 ,DOA ,Inherited optic neuropathy ,Medicine ,Science - Abstract
Abstract This study aims to describe the ophthalmic characteristics of autosomal dominant (AD) WFS1-associated optic atrophy (AD WFS1-OA), and to explore phenotypic differences with dominant optic atrophy (DOA) caused by mutations in the OPA1-gene. WFS1-associated diseases, or ‘wolframinopathies’, exhibit a spectrum of ocular and systemic phenotypes, of which the autosomal recessive Wolfram syndrome has been the most extensively studied. AD mutations in WFS1 also cause various phenotypical changes including OA. The most common phenotype in AD WFS1-associated disease, the combination of OA and hearing loss (HL), clinically resembles the ‘plus’ phenotype of DOA. We performed a comprehensive medical record review across tertiary referral centers in the Netherlands and Belgium resulting in 22 patients with heterozygous WFS1 variants. Eighteen (82%) had HL in addition to OA. Diabetes mellitus was found in 7 (32%). Four patients had isolated OA. One patient had an unusual phenotype with anterior chamber abnormalities and malformations of the extremities. Compared to DOA, AD WFS1-OA patients had different color vision abnormalities (red-green vs blue-yellow in DOA), abnormal OPL lamination on macular OCT (absent in DOA), more generalized thinning of the retinal nerve fiber layer, and more reduced and delayed pattern reversal visual evoked potentials.
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- 2024
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45. Emoticon in Development of Virtual Graphic Emotionology
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Maria M. Ivanova-Yakushko, Karpis S. Anumyan, and Mikhail N. Karabulatov
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emotions ,emoticon ,graphic emotionology ,virtual communication ,graphic emotive metaphor ,Philology. Linguistics ,P1-1091 ,Social Sciences - Abstract
Emoticons are a vivid example of graphic emotionology in virtual communication. The interdisciplinary character of this research made it possible to combine linguistics with exact and natural sciences, including the young science of emotional artificial intelligence. Transmitting psycho-emotional experiences is important for effective virtual communication. Emotional pictography provides a more accurate understanding of the emotive content in a message. It relies on associative links between the image of a specific psycho-emotional state and its perception by a carrier of a specific linguistic culture. Basic emoticons are of universal nature, and internet users with different cultural and linguistic backgrounds tend to interpret them similarly. However, members of different ethno-linguistic communities sometimes decode the same emotions differently, which may lead to misunderstanding, as well as to serve as a marker on the friend – foe axis. Emoticons represent a clearly verified range of emotive states, which can be appealed to in virtual communication. The authors developed a classification of emoticons and proposed graphic emotionology as a new branch of linguistic semiotics. The metaphorical nature of the emoticon as a coded emotion with additional evaluative shades is revealed as a certain unified image or a complex of signs due to the accepted emotive norms of speech behavior. In addition, emoticons provide efficient compression during virtual communication. Intercultural virtual communication enriches the range of emoticons both linguistically and culturally, thus developing graphic emotionology internationally. Emoticons provide insight into the development of graphic emotionology.
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- 2024
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46. Toward a roadmap for sustainable lean adoption in hospitals: a Delphi study
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Maria M. Van Zyl-Cillié, Desirée H. van Dun, and Hanneke Meijer
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Lean in healthcare ,Lean implementation ,Change management ,Maturity models ,Implementation science ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background The benefits of lean adoption in healthcare include improved process efficiency and quality of patient care. However, research indicates that lean implementation in healthcare, and specifically hospitals, is often not sustained. Furthermore, there is a need for maturity models that guide lean implementation, specifically in hospitals. This study develops a prescriptive maturity model named the Sustaining of Lean Adoption in Hospitals Roadmap (SOLAR) that acts as a practical guideline for the sustainable adoption of lean in hospitals. Methods The SOLAR has three theoretical foundations, namely lean implementation success factors in hospitals, implementation science, and change management theory. A systematic literature review was conducted to determine the lean implementation success factors in hospitals as the first building block. Secondly, practices from implementation science were used to create the action items in the SOLAR. Ten change steps were elicited from change management theory as the third theoretical building block of the roadmap. We refined the roadmap through three Delphi rounds that verified its useability in hospitals. Results The final SOLAR consists of four maturity phases (prepare, plan, experiment and learn, and sustain) and includes action items for each phase related to the hospital’s strategy, resources, engaging of people, and culture. The action items and change management steps shown in the SOLAR are not intended as an exhaustive list but provide guidelines on aspects hospitals must consider when they aim to adopt lean sustainably. Conclusions The strong theoretical base of the SOLAR enables hospitals to safely experiment and learn which implementation methods are best suited to their unique environment. The SOLAR is, therefore, an actionable guideline that informs both academics and practitioners involved in lean adoption in hospitals. This roadmap can guide future retrospective longitudinal or action research.
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- 2024
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47. The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics
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Ann M. Mc Cartney, Giulio Formenti, Alice Mouton, Diego De Panis, Luísa S. Marins, Henrique G. Leitão, Genevieve Diedericks, Joseph Kirangwa, Marco Morselli, Judit Salces-Ortiz, Nuria Escudero, Alessio Iannucci, Chiara Natali, Hannes Svardal, Rosa Fernández, Tim De Pooter, Geert Joris, Mojca Strazisar, Jonathan M. D. Wood, Katie E. Herron, Ole Seehausen, Phillip C. Watts, Felix Shaw, Robert P. Davey, Alice Minotto, José M. Fernández, Astrid Böhne, Carla Alegria, Tyler Alioto, Paulo C. Alves, Isabel R. Amorim, Jean-Marc Aury, Niclas Backstrom, Petr Baldrian, Laima Baltrunaite, Endre Barta, Bertrand BedHom, Caroline Belser, Johannes Bergsten, Laurie Bertrand, Helena Bilandija, Mahesh Binzer-Panchal, Iliana Bista, Mark Blaxter, Paulo A. V. Borges, Guilherme Borges Dias, Mirte Bosse, Tom Brown, Rémy Bruggmann, Elena Buena-Atienza, Josephine Burgin, Elena Buzan, Alessia Cariani, Nicolas Casadei, Matteo Chiara, Sergio Chozas, Fedor Čiampor, Angelica Crottini, Corinne Cruaud, Fernando Cruz, Love Dalen, Alessio De Biase, Javier del Campo, Teo Delic, Alice B. Dennis, Martijn F. L. Derks, Maria Angela Diroma, Mihajla Djan, Simone Duprat, Klara Eleftheriadi, Philine G. D. Feulner, Jean-François Flot, Giobbe Forni, Bruno Fosso, Pascal Fournier, Christine Fournier-Chambrillon, Toni Gabaldon, Shilpa Garg, Carmela Gissi, Luca Giupponi, Jessica Gomez-Garrido, Josefa González, Miguel L. Grilo, Björn Grüning, Thomas Guerin, Nadege Guiglielmoni, Marta Gut, Marcel P. Haesler, Christoph Hahn, Balint Halpern, Peter W. Harrison, Julia Heintz, Maris Hindrikson, Jacob Höglund, Kerstin Howe, Graham M. Hughes, Benjamin Istace, Mark J. Cock, Franc Janžekovič, Zophonias O. Jonsson, Sagane Joye-Dind, Janne J. Koskimäki, Boris Krystufek, Justyna Kubacka, Heiner Kuhl, Szilvia Kusza, Karine Labadie, Meri Lähteenaro, Henrik Lantz, Anton Lavrinienko, Lucas Leclère, Ricardo Jorge Lopes, Ole Madsen, Ghislaine Magdelenat, Giulia Magoga, Tereza Manousaki, Tapio Mappes, Joao Pedro Marques, Gemma I. Martinez Redondo, Florian Maumus, Shane A. McCarthy, Hendrik-Jan Megens, Jose Melo-Ferreira, Sofia L. Mendes, Matteo Montagna, Joao Moreno, Mai-Britt Mosbech, Mónica Moura, Zuzana Musilova, Eugene Myers, Will J. Nash, Alexander Nater, Pamela Nicholson, Manuel Niell, Reindert Nijland, Benjamin Noel, Karin Noren, Pedro H. Oliveira, Remi-Andre Olsen, Lino Ometto, Rebekah A. Oomen, Stephan Ossowski, Vaidas Palinauskas, Snaebjorn Palsson, Jerome P. Panibe, Joana Pauperio, Martina Pavlek, Emilie Payen, Julia Pawlowska, Jaume Pellicer, Graziano Pesole, Joao Pimenta, Martin Pippel, Anna Maria Pirttilä, Nikos Poulakakis, Jeena Rajan, Rúben M.C. Rego, Roberto Resendes, Philipp Resl, Ana Riesgo, Patrik Rodin-Morch, Andre E. R. Soares, Carlos Rodriguez Fernandes, Maria M. Romeiras, Guilherme Roxo, Lukas Rüber, Maria Jose Ruiz-Lopez, Urmas Saarma, Luis P. da Silva, Manuela Sim-Sim, Lucile Soler, Vitor C. Sousa, Carla Sousa Santos, Alberto Spada, Milomir Stefanovic, Viktor Steger, Josefin Stiller, Matthias Stöck, Torsten H. Struck, Hiranya Sudasinghe, Riikka Tapanainen, Christian Tellgren-Roth, Helena Trindade, Yevhen Tukalenko, Ilenia Urso, Benoit Vacherie, Steven M. Van Belleghem, Kees Van Oers, Carlos Vargas-Chavez, Nevena Velickovic, Noel Vella, Adriana Vella, Cristiano Vernesi, Sara Vicente, Sara Villa, Olga Vinnere Pettersson, Filip A. M. Volckaert, Judit Voros, Patrick Wincker, Sylke Winkler, Claudio Ciofi, Robert M. Waterhouse, and Camila J. Mazzoni
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General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
Abstract A genomic database of all Earth’s eukaryotic species could contribute to many scientific discoveries; however, only a tiny fraction of species have genomic information available. In 2018, scientists across the world united under the Earth BioGenome Project (EBP), aiming to produce a database of high-quality reference genomes containing all ~1.5 million recognized eukaryotic species. As the European node of the EBP, the European Reference Genome Atlas (ERGA) sought to implement a new decentralised, equitable and inclusive model for producing reference genomes. For this, ERGA launched a Pilot Project establishing the first distributed reference genome production infrastructure and testing it on 98 eukaryotic species from 33 European countries. Here we outline the infrastructure and explore its effectiveness for scaling high-quality reference genome production, whilst considering equity and inclusion. The outcomes and lessons learned provide a solid foundation for ERGA while offering key learnings to other transnational, national genomic resource projects and the EBP.
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- 2024
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48. Molecular pathology, developmental changes and synaptic dysfunction in (pre-) symptomatic human C9ORF72-ALS/FTD cerebral organoids
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Astrid T. van der Geest, Channa E. Jakobs, Tijana Ljubikj, Christiaan F. M. Huffels, Marta Cañizares Luna, Renata Vieira de Sá, Youri Adolfs, Marina de Wit, Daan H. Rutten, Marthe Kaal, Maria M. Zwartkruis, Mireia Carcolé, Ewout J. N. Groen, Elly M. Hol, Onur Basak, Adrian M. Isaacs, Henk-Jan Westeneng, Leonard H. van den Berg, Jan H. Veldink, Domino K. Schlegel, and R. Jeroen Pasterkamp
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ALS ,Brain ,Neural organoid ,C9ORF72 ,Development ,Presymptomatic ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract A hexanucleotide repeat expansion (HRE) in C9ORF72 is the most common genetic cause of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). Human brain imaging and experimental studies indicate early changes in brain structure and connectivity in C9-ALS/FTD, even before symptom onset. Because these early disease phenotypes remain incompletely understood, we generated iPSC-derived cerebral organoid models from C9-ALS/FTD patients, presymptomatic C9ORF72-HRE (C9-HRE) carriers, and controls. Our work revealed the presence of all three C9-HRE-related molecular pathologies and developmental stage-dependent size phenotypes in cerebral organoids from C9-ALS/FTD patients. In addition, single-cell RNA sequencing identified changes in cell type abundance and distribution in C9-ALS/FTD organoids, including a reduction in the number of deep layer cortical neurons and the distribution of neural progenitors. Further, molecular and cellular analyses and patch-clamp electrophysiology detected various changes in synapse structure and function. Intriguingly, organoids from all presymptomatic C9-HRE carriers displayed C9-HRE molecular pathology, whereas the extent to which more downstream cellular defects, as found in C9-ALS/FTD models, were detected varied for the different presymptomatic C9-HRE cases. Together, these results unveil early changes in 3D human brain tissue organization and synaptic connectivity in C9-ALS/FTD that likely constitute initial pathologies crucial for understanding disease onset and the design of therapeutic strategies.
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- 2024
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49. The citizen science project “AmphiBiom”: a quest to mitigate habitat loss for the European green toad
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Stephan Burgstaller, Janette Siebert, Maria M. Krall, Yurii V. Kornilev, Magdalena Spießberger, David Hamernik, Janis Kremser, Thomas Ofenböck, Johann G. Zaller, Silke Schweiger, Wolfram Graf, Daniel Dörler, Florian Heigl, and Lukas Landler
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AmphiApp ,amphibian ,aquatic invertebrates ,breedi ,Science - Abstract
We aim to understand the distribution and environmental drivers for the occurrence of the European green toad (Bufotes viridis) in Austria and create breeding habitats for it. Citizen scientists can use a custom smartphone application (AmphiApp) to record data such as the calls of anurans and photographic documentation. The records are validated by experts. To provide breeding habitats for green toads, we gave citizen scientists 300 small plastic ponds (1.20L × 0.9W × 0.4D m) to place on their land (garden, backyard). These citizen scientists will monitor their pond every two weeks for two seasons (March–August 2024 & 2025) for the occurrence of amphibians and their invertebrate prey. During the first two months, most pond owners have been highly motivated and have followed the monitoring scheme, despite the involved procedure, likely due to our active engagement with them (e.g., during the pond delivery by team members, emails, phone calls and messaging within AmphiApp).
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- 2024
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50. Understanding species-specific and conserved RNA-protein interactions in vivo and in vitro
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Sarah E. Harris, Maria S. Alexis, Gilbert Giri, Francisco F. Cavazos, Yue Hu, Jernej Murn, Maria M. Aleman, Christopher B. Burge, and Daniel Dominguez
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Science - Abstract
Abstract While evolution is often considered from a DNA- and protein-centric view, RNA-based regulation can also impact gene expression and protein sequences. Here we examine interspecies differences in RNA-protein interactions using the conserved neuronal RNA-binding protein, Unkempt (UNK) as model. We find that roughly half of mRNAs bound in human are also bound in mouse. Unexpectedly, even when transcript-level binding was conserved across species differential motif usage was prevalent. To understand the biochemical basis of UNK-RNA interactions, we reconstitute the human and mouse UNK-RNA interactomes using a high-throughput biochemical assay. We uncover detailed features driving binding, show that in vivo patterns are captured in vitro, find that highly conserved sites are the strongest bound, and associate binding strength with downstream regulation. Furthermore, subtle sequence differences surrounding motifs are key determinants of species-specific binding. We highlight the complex features driving protein-RNA interactions and how these evolve to confer species-specific regulation.
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- 2024
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