Search

Marine heatwaves (MHWs) caused by multiple phenomena with days to months duration are increasingly common disturbances in ocean ecosystems. We investigated the impacts of MHWs on pelagic communities using spatially resolved time‐series of multiple trophic levels from the Southern California Current Ecosystem. Indices of phytoplankton biomass mostly declined during MHWs because of reduced nutrient supply (excepting Prochlorococcus) and were generally more sensitive to marine heatwave intensity than duration. By contrast, mesozooplankton (as estimated by zooplankton displacement volume) were somewhat more strongly correlated with MHW duration than intensity. Zooplankton anomalies were also positively correlated with fucoxanthin (diatom) anomalies, highlighting possible bottom‐up influences during MHWs. Mobile consumers (forage fish) showed more complex responses, with fish egg abundance declining during MHWs but not correlating with any MHW characteristics. Our findings provide partial evidence of how MHW characteristics can shape variable ecological responses due to the differing life spans and behaviours of different trophic levels. [ABSTRACT FROM AUTHOR]

Unveiling the interactions among phytoplankton and bacteria at the level of species requires axenic isolates to experimentally demonstrate their mutual effects. In this study, we describe the interactions among the diatoms Pseudo‐nitzschia granii and Chaetoceros tenuissimus and their associated bacterial species, isolated from surface water of a coastal upwelling system using coculture experiments. Microalgae growth was assessed in axenic monocultures or in coculture with each of their co‐isolated bacteria in the presence or absence of B vitamins. Pseudo‐nitzschia granii growth was limited by B‐vitamin supply, except when cultured with the bacteria Jannaschia cystaugens, which seemed to provide adequate levels of B vitamins to the diatom. Chaetoceros tenuissimus growth was reduced in the absence of B vitamins. Moreover, the growth of C. tenuissimus was stimulated by Alteromonas sp. and Celeribacter baekdonensis during the exponential growth. These results show a diversity of specific interactions between the diatoms and co‐isolated bacteria, ranging from allelopathy to commensalism. Understanding how interactions between phytoplankton and bacteria modulate the structure and function of marine microbial plankton communities will contribute to a greater knowledge of plankton ecology and improve our ability to predict nutrient fluxes in marine ecosystems or the formation of blooms in a context of global change. [ABSTRACT FROM AUTHOR]

Adaptive movement in response to individual interactions represents a fundamental evolutionary solution found by both unicellular organisms and metazoans to avoid predators, search for resources or conspecifics for mating, and engage in other collaborative endeavors. Displacement processes are known to affect interspecific relationships, especially when linked to foraging strategies. Various displacement phenomena occur in marine plankton, ranging from the large-scale diel vertical migration of zooplankton to microscale interactions around microalgal cells. Among these symbiotic interactions, collaboration between the centric diatom Chaetoceros coarctatus and the peritrich ciliate Vorticella oceanica is widely known and has been recorded in several studies. Here, using 2D and 3D tracking records, we describe the movement patterns of the non-motile, chain-forming diatoms (C. coarctatus) carried by epibiotic ciliates (V. oceanica). The reported data on the Chaetoceros–Vorticella association illustrated the consortium's ability to generate distinct motility patterns. We established that the currents generated by the attached ciliates, along with the variability in the contraction and relaxation of ciliate stalks in response to food concentration, resulted in three types of trajectories for the consortium. The characteristics of these distinct paths were determined using robust statistical methods, indicating that the different displacement behaviors allowed the consortium to adequately explore distributed resources and remain within the food-rich layers provided in the experimental containers. A simple mechanical–stochastic model was successfully applied to simulate the observed displacement patterns, further supporting the proposed mechanisms of collective response to the environment. [ABSTRACT FROM AUTHOR]

The Arctic Ocean experiences significant seasonal to interannual environmental changes, including in temperature, light, sea ice, and surface nutrient concentrations, that influence the dynamics of marine plankton populations. Here, we use a hindcast simulation (1948–2009) of size-structured Arctic Ocean plankton communities, ocean circulation, and biogeochemical cycles in order to better understand how seasonal to interannual changes in the environment influence phytoplankton physiology, plankton community structure, trophic dynamics, and fish production in the Arctic Ocean. The growth of model phytoplankton was primarily limited in winter, spring, and fall by light, but in summer, the growth of smaller and larger phytoplankton was mostly limited by temperature and nutrient availability, respectively. The dominant trophic pathway in summer was from phytoplankton to herbivorous zooplankton such that the average trophic position of model zooplankton was lower in the summer growing season compared to the rest of the year. On interannual timescales, changes in plankton community composition were strongly tied to interannual changes in bottom-up forcing by the environment. In the summer, in years with less ice and warmer temperatures, the biomass of phytoplankton and zooplankton was higher, the size–abundance relationship slopes were more negative (indicative of a phytoplankton community enriched in smaller phytoplankton), zooplankton had higher mean trophic position (indicative of greater carnivory), and potential fishery production was greater, fueled by increased mesozooplankton biomass and flux of organic matter to the benthos. The summertime shift toward greater carnivory in warmer and low-ice years was due primarily to changes in phenology, with phytoplankton and microzooplankton blooms occurring approximately 1 month earlier in these conditions and carnivorous zooplankton increasing in abundance during summer. The model provides a spatially and temporally complete overview of simulated changes in plankton communities in the Arctic Ocean occurring on seasonal to interannual timescales, and it provides insights into the mechanisms underlying these changes as well as their broader biogeochemical and ecosystem significance. [ABSTRACT FROM AUTHOR]

The carbon and nitrogen isotope ratios (δ13C and δ15N) of marine plankton record biogeochemical processes at the base of the food web. In the Southern Ocean, such data, predominantly from summer, have been used to infer surface CO2 concentrations and the potential for biological carbon export. However, variability in plankton δ13C and δ15N remains poorly understood, with the lack of seasonal measurements from the Southern Ocean emerging as a particular limitation. Here, we investigate the δ13C and δ15N of suspended particulate matter (SPM) and zooplankton collected from the Subantarctic Ocean in winter, summer, and autumn. The low summertime δ13CSPM and δ15NSPM can be explained by strong diatom reliance on nitrate supplied during winter mixing. A subsequent increase in δ13CSPM and decrease in δ15NSPM by autumn is consistent with iron limitation in mid‐ to late‐summer favoring diatom succession by nano‐phytoplankton that consume mainly recycled ammonium. By winter, bacterial decomposition of biomass outpaces new biomass production, decreasing δ13CSPM and raising δ15NSPM. The δ13C and δ15N of contemporaneously sampled zooplankton generally reflect the variability in δ13CSPM and δ15NSPM, with one autumn mismatch suggesting that in situ SPM is not always the dominant zooplankton food source. Our study shows how nutrient dynamics and phytoplankton community composition shape the seasonality of the Subantarctic's isotopic baselines, emphasizing a key role for iron availability. This work has implications for isotope‐based food web studies, highlighting the need to consider seasonal variability in δ13CSPM and δ15NSPM, as well as the different turnover times of phytoplankton (i.e., SPM) vs. zooplankton biomass. [ABSTRACT FROM AUTHOR]

Environmental DNA (eDNA) preserved in marine sediments is increasingly being used to study past ecosystems. However, little is known about how accurately marine biodiversity is recorded in sediment eDNA archives, especially planktonic taxa. Here, we address this question by comparing eukaryotic diversity in 273 eDNA samples from three water depths and the surface sediments of 24 stations in the Nordic Seas. Analysis of 18S‐V9 metabarcoding data reveals distinct eukaryotic assemblages between water and sediment eDNA. Only 40% of Amplicon Sequence Variants (ASVs) detected in water were also found in sediment eDNA. Remarkably, the ASVs shared between water and sediment accounted for 80% of total sequence reads suggesting that a large amount of plankton DNA is transported to the seafloor, predominantly from abundant phytoplankton taxa. However, not all plankton taxa were equally archived on the seafloor. The plankton DNA deposited in the sediments was dominated by diatoms and showed an underrepresentation of certain nano‐ and picoplankton taxa (Picozoa or Prymnesiophyceae). Our study offers the first insights into the patterns of plankton diversity recorded in sediment in relation to seasonality and spatial variability of environmental conditions in the Nordic Seas. Our results suggest that the genetic composition and structure of the plankton community vary considerably throughout the water column and differ from what accumulates in the sediment. Hence, the interpretation of sedimentary eDNA archives should take into account potential taxonomic and abundance biases when reconstructing past changes in marine biodiversity. [ABSTRACT FROM AUTHOR]

Plankton play an indispensable role in the biogeochemical processes of marine ecosystem. However, unraveling the intricate interactions among biodiversity, trophic linkages, and biotic-abiotic interplay between phytoplankton-zooplankton remains a significant challenge. Here, we conducted field studies in the neritic area of the Bohai Sea during autumn 2023 and spring 2024 to explore seasonal variations of both phytoplankton and zooplankton through microscope. Our analysis revealed a sharp decline in trophic interactions across phytoplankton and zooplankton, with an abundance ratio in autumn 2023 being 5.5 times higher than in spring 2024. Additionally, dominant plankton species (Y ≥ 0.02) exhibited obvious differences between the two seasons, with higher species diversity observed in autumn. Moreover, each dominant zooplankton species had distinct preferred food items in both seasons, with Rhizosolenia setigera being favored by Noctiluca scintillans and Acartia pacifica. Furthermore, a multivariate biota-environment analysis indicated that each dominant plankton species had unique correlation with specific environmental parameters, highlighting how plankton can fully exploit external environmental conditions to survive in seasonal variations. Ultimately, our findings emphasize significant seasonal dynamics and provide a solid foundation for assessing the potential impacts of environmental changes on plankton in coastal marine realm. [ABSTRACT FROM AUTHOR]

The marine ecosystem is one of the most extensive and abundant ecosystems on Earth. Marine plankton is an important component, and its abundance, number of species, and dominant species are regarded as important monitoring indicators. Aiming at the problems of low accuracy and high complexity in identifying plankton based on convolutional neural networks, this study proposes a lightweight identification algorithm for plankton images based on the improved MobileNetV2. Firstly, the network layer structure is extracted by redesigning features to balance the depth and width of the network to reduce the model parameters; secondly, the lightweight coordinate attention (CA) mechanism is introduced to strengthen the attention and extraction ability of key areas; in addition, the structure of the network classifier is optimized to improve the utilization efficiency of the model parameters. The results show that the model achieves a 95.46% accuracy and 94.48% recall in 12 kinds of images. Compared with the initial MobileNetV2, the parameters and calculation amount are reduced by 72.47% and 52.09%, respectively, and the reasoning time for a single image is 6.15 ms. The model realizes the accurate identification of plankton in situ under the premise of ensuring it is lightweight. Combining time information and depth data, it is of great significance for marine ecological environment monitoring and prediction to obtain the abundance of various plankton. [ABSTRACT FROM AUTHOR]

Environmental DNA metabarcoding (eDNA metaB) is fundamental for monitoring marine biodiversity and its spread in coastal ecosystems. We applied eDNA metaB to seawater samples to investigate the spatiotemporal variability of plankton and small pelagic fish, comparing sites with different environmental conditions across a coast-to-offshore gradient at river mouths along the Campania coast (Italy) over 2 years (2020–2021). We found a marked seasonality in the planktonic community at the regional scale, likely owing to the hydrodynamic connection among sampling sites, which was derived from numerical simulations. Nonetheless, spatial variability among plankton communities was detected during summer. Overall, slight changes in plankton and fish composition resulted in the potential reorganization of the pelagic food web at the local scale. This work supports the utility of eDNA metaB in combination with hydrodynamic modelling to study marine biodiversity in the water column of coastal systems. This article is part of the theme issue 'Connected interactions: enriching food web research by spatial and social interactions'. [ABSTRACT FROM AUTHOR]

Marine plankton communities form intricate networks of interacting organisms at the base of the food chain, and play a central role in regulating ocean biogeochemical cycles and climate. However, predicting plankton community shifts in response to climate change remains challenging. While species distribution models are valuable tools for predicting changes in species biogeography under climate change scenarios, they generally overlook the key role of biotic interactions, which can significantly shape ecological processes and ecosystem responses. Here, we introduce a novel statistical framework, association distribution modelling (ADM), designed to model and predict ecological associations distribution in space and time. Applied on a Tara Oceans genome-resolved metagenomics dataset, the present-day biogeography of ADM-inferred marine plankton associations revealed four major biogeographic biomes organized along a latitudinal gradient. We predicted the evolution of these biome-specific communities in response to a climate change scenario, highlighting differential responses to environmental change. Finally, we explored the functional potential of impacted plankton communities, focusing on carbon fixation, outlining the predicted evolution of its geographical distribution and implications for ecosystem function. This article is part of the theme issue 'Connected interactions: enriching food web research by spatial and social interactions'. [ABSTRACT FROM AUTHOR]

Although usually considered part of the plankton, cubozoans are strong swimmers. The aim of this study was to determine the influence of the active swimming ability of the box jellyfish Carybdea marsupialis on the spatial distribution of a well‐studied population in the NW Mediterranean where adults and juveniles do not overlap geographically. To accomplish this, we analyzed the swimming speed, effective velocity, effective displacement index (EDI), and proficiency of 27 individuals with diagonal bell widths (DBWs) ranging from 1.1 to 36 mm. The laboratory analysis utilized conventional video recordings and the video analysis tool Tracker. Mean swimming speed for small juveniles, medium juveniles and adults was 9.7 ± 0.8, 21.9 ± 2.3 and 43.1 ± 1.8 mm s−1 (mean ± se), respectively. Effective velocity was also proportional to size, ranging from 5.0 ± 0.7 to 38.8 ± 3.1 mm s−1 (mean ± se). The calculated EDI for each group was 0.51 ± 0.05, 0.84 ± 0.06 and 0.90 ± 0.05 (mean ± se), respectively. Proficiency showed an inverse trend, from 6.4 ± 0.6 s−1 for the small juveniles to 1.36 ± 0.05 for adults (mean ± se). Comparing the swimming speed results with the local currents obtained from drifting buoys analyzed in the area, adults would be able to swim strongly enough to overcome almost 70% of the currents, whereas the small juveniles would not reach 17%. This would allow larger individuals to select their habitat, while smaller individuals are left dependent on advection. Although experiments adding currents in aquaria would be necessary to confirm these theoretical results, the data obtained would be useful in improving the performance of bio‐mathematical models used to predict jellyfish blooms since, even though the sting of C. marsupialis is non‐fatal, it may produce systemic effects in sensitive swimmers. [ABSTRACT FROM AUTHOR]

Superabundant microbes (SAMs), such as marine phytoplankton, are extremely important in Earth's ecosystems. Evolutionary processes have been mainly studied in much smaller populations, and it is poorly understood how evolution works in the huge populations of SAMs. The standard tools of evolutionary genetics were developed for populations of smaller sizes, and many of these tools may not be suitable to study evolution in astronomically large SAM populations. Nucleotide sequence polymorphism is surprisingly low in SAMs, corresponding to a population of a few million individuals, but the reasons for this lack of diversity are unclear. Marine phytoplankton play crucial roles in the Earth's ecological, chemical, and geological processes. They are responsible for about half of global primary production and drive the ocean biological carbon pump. Understanding how plankton species may adapt to the Earth's rapidly changing environments is evidently an urgent priority. This problem requires evolutionary genetic approaches as evolution occurs at the level of allele frequency change within populations driven by genetic drift and natural selection (microevolution). Plankters such as the coccolithophore Gephyrocapsa huxleyi and the cyanobacterium Prochlorococcus 'marinus' are among Earth's most abundant organisms. In this opinion paper we discuss how evolution in astronomically large populations of superabundant microbes (SAMs) may act fundamentally differently than it does in the populations of more modest size found in well-studied organisms. This offers exciting opportunities to study evolution in the conditions that have yet to be explored and also leads to unique challenges. Exploring these opportunities and challenges is the goal of this article. [ABSTRACT FROM AUTHOR]

Marine plankton capable of photosynthesis and predation ("mixoplankton") comprise up to 50% of protist plankton and include many harmful species. However, marine environmental management policies, including the European Union Marine Strategy Framework Directive (MSFD) and the USEPA, assume a strict dichotomy between autotrophic phytoplankton and heterotrophic zooplankton. Mixoplankton often differ significantly from these two categories in their response to environmental pressures and affect the marine environment in ways we are only beginning to understand. While the management policies may conceptually provide scope for incorporating mixoplankton, such action is rarely implemented. We suggest that the effectiveness of monitoring and management programs could benefit from explicit implementations regarding the ecological roles and impact of mixoplankton. Taking the MSFD as an example of marine management guidelines, we propose appropriate methods to explicitly include mixoplankton in monitoring and marine management. Integr Environ Assess Manag 2024;20:1366–1383. © 2024 The Authors. Integrated Environmental Assessment and Management published by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC). Key Points: Mixoplankton (capable of photo‐ and heterotrophy) are a broad trophic group that is currently not considered by marine environmental management, while they often display different responses to environmental changes than strict phytoplankton or zooplankton due to their unique physiology.Many harmful algal species that are currently being monitored due to their impact on public health and the economy are mixoplankton, and effective forecasting systems may be challenging to establish by not considering their unique trophic mode.We showcase where the current omission of mixoplankton from marine management can misinform on the environmental status of marine ecosystems and how existing management and monitoring programs can benefit from including mixoplankton.Using the European Marine Strategy Framework Directive as an example, we show how mixoplankton can be integrated into existing management programs and where research gaps still exist. [ABSTRACT FROM AUTHOR]

Plankton plays important roles in the marine ecosystems as important producers for primary production, major components in the global biogeochemical cycles, and the foundation of the marine food web. Despite their importance, long-term monitoring data about marine plankton are fairly limited, especially in the Asia-Pacific region. We fill this knowledge gap by providing a 29-year long-term monitoring data on the coastal areas of western Taiwan quarterly from 1993 to 2021. This long-term monitoring data can be used to set proper baseline for detecting human-induced impacts on the plankton, as well as modelling future scenarios under global changes. [ABSTRACT FROM AUTHOR]

We present a new, annually resolved coccolithophore relative abundance record (1889–1993 CE) from a laminated marine sediment core obtained from the northeastern Arabian Sea to document assemblage variations during the last century. Our analysis revealed that ∼80% of the assemblage is composed of the coccolithophore species Gephyrocapsa oceanica, Emiliania huxleyi, and Florisphaera profunda. Hierarchical clustering of the coccolithophore data delineates time intervals (1889–1909 CE, 1910–1959 CE, 1960–1993 CE) comparable to previously reported interdecadal changes of the El Niño–Southern Oscillation (ENSO)–Indian monsoon variance. We find that F. profunda (Fp%) is positively correlated with central Pacific ENSO (Niño 4 and Niño 3.4). Frequency analyses of Fp% match ENSO quasiperiodicity reported from instrumental data and proxy records and support the existence of previously described ENSO–Indian monsoon teleconnections. Furthermore, the increased variance of Fp% and associated decrease in marine primary productivity starting ∼1960 CE appears to be driven by decreased upward nutrient transport linked to increased surface water stratification due to surface ocean warming. With the predicted increases in frequency and strength of central Pacific El Niño as well as surface ocean warming and upper ocean stratification in the Indian Ocean over the coming century, our results imply further impacts on coccolithophores in the northeastern Arabian Sea that may have cascading effects on the marine food web and global biogeochemical cycles. Plain Language Summary: Coccolithophores are photosynthetic marine plankton with calcium carbonate coverings and form the base of the marine food web. Therefore, documenting the response of coccolithophores to environmental variables over the instrumental period may improve understanding of how they will react to anthropogenic climate change—with important implications for the marine ecosystem. Here, we analyzed coccolithophores preserved in yearly deposited sediments from the Arabian Sea and identified potential drivers of their variations over the last century, a time period highly relevant in societal time frames. Our results show that the coccolithophore assemblage responds in relation to previously described interdecadal changes in the Indian monsoon system and the El Niño–Southern Oscillation (ENSO). We also find a 4–5‐year cycle in the coccolithophore assemblage that matches the ENSO cycle. Atmospheric processes in India related to ENSO may have weakened the Indian monsoon winds, decreased the intensity of surface ocean water mixing and lessened the availability of nutrients. Therefore, nutrient availability is likely the main driver of the changes in the coccolithophore assemblage in our record. Predicted future warming of the oceans might result in further decrease in surface nutrients that may impact coccolithophores and the marine ecosystem. Key Points: A yearly coccolithophore assemblage record from the Arabian Sea documents changes linked to climatic variability in the last centuryChanges in the coccolithophore assemblage composition independently delineate El Niño–Southern Oscillation and Indian monsoon variationsDecreased land–ocean thermal gradients weakened the monsoon and increased water stratification [ABSTRACT FROM AUTHOR]

Aim: We are using the fossil record of different marine plankton groups to determine how their biodiversity has changed during past climate warming comparable to projected future warming. Location: North Atlantic Ocean and adjacent seas. Time series cover a latitudinal range from 75° N to 6° S. Time period: Past 24,000 years, from the Last Glacial Maximum (LGM) to the current warm period covering the last deglaciation. Major taxa studied: Planktonic foraminifera, dinoflagellates and coccolithophores. Methods: We analyse time series of fossil plankton communities using principal component analysis and generalized additive models to estimate the overall trend of temporal compositional change in each plankton group and to identify periods of significant change. We further analyse local biodiversity change by analysing species richness, species gains and losses, and the effective number of species in each sample, and compare alpha diversity to the LGM mean. Results: All plankton groups show remarkably similar trends in the rates and spatio‐temporal dynamics of local biodiversity change and a pronounced non‐linearity with climate change in the current warm period. Assemblages of planktonic foraminifera and dinoflagellates started to change significantly with the onset of global warming around 15,500 to 17,000 years ago and continued to change at the same rate during the current warm period until at least 5000 years ago, while coccolithophore assemblages changed at a constant rate throughout the past 24,000 years, seemingly irrespective of the prevailing temperature change. Main conclusions: Climate change during the transition from the LGM to the current warm period led to a long‐lasting reshuffling of zoo‐ and phytoplankton assemblages, likely associated with the emergence of new ecological interactions and possibly a shift in the dominant drivers of plankton assemblage change from more abiotic‐dominated causes during the last deglaciation to more biotic‐dominated causes with the onset of the Holocene. [ABSTRACT FROM AUTHOR]

Currently, the mismanagement of marine by-products (head, skin, guts, blood, and bones) is a problem for the seafood processing industry, causing economic losses and environmental problems. Shrimp is a high-protein marine plankton species, and after processing, 45% of the total weight is discarded. Therefore, processes must be developed to recover biomolecules from this waste. Hydrolysis of shrimp by-products is an efficient way to add value to the protein for the extraction of bioactive peptides. The present review focuses on recent research on the use of marine by-products to obtain bioactive peptides, especially those from shrimp waste, and discusses their benefits for human health. Protein hydrolysates from shrimp by-products are a viable and technological strategy to obtain peptides of different sizes and improved antioxidant, anti-hypertensive, antiinflammatory, and hypocholesterolaemic activities. Therefore, the reuse and valorisation of shrimp by-products by obtaining bioactive peptides is an active research area, with potential applications and beneficial effects for human health, the environment, and the economy. However, further studies are needed to ensure their safe use, and to understand their mechanism of action. [ABSTRACT FROM AUTHOR]

Slightly acidic electrolyzed water (SAEW) is a highly safe sterilizing water that consists of an aqueous solution of hypochlorous acid (HOCl). It exhibits high sterilizing power even at low concentrations of HOCl. In this study, we evaluated the effect of SAEW on marine plankton to understand its impact on marine environments and consider its possible application on ballast water treatment or aquaculture. Experiments conducted on plankton communities obtained from Tokyo Bay showed an approximately 65% reduction in the S‐size plankton population (≥10 and <50 μm) at an available chlorine concentration of 0.5 mg/L, whereas an approximately 50% reduction of the L‐size plankton population (≥50 μm) was observed at an available chlorine concentration of 2 mg/L. We also verified the sterilization effect of SAEW against two types of single‐species plankton: Chaetoceros densum as S‐size plankton and Tigriopus japonicus as L‐size plankton. Results showed 100% population decrease for C. densum and T. japonicus at available chlorine concentrations of 3.5 and 11 mg/L, respectively. [ABSTRACT FROM AUTHOR]

The morphology of members of the order Rhizostomeae is revisited considering all life cycle stages, but with emphasis on the medusa. The current classification of the group is presented, and some aspects of species diversity are discussed. The main issues investigated since the 1970s are briefly presented by decade. [ABSTRACT FROM AUTHOR]

Plankton studies serve as a basis for marine ecosystem research, but knowledge of marine plankton is still incomplete due to its extreme taxonomic and functional complexity. The application of metabarcoding is very valuable for the characterisation of the plankton community. The plankton community of the Southern Adriatic is subject to strong environmental fluctuations and changes, which underlines the need for frequent, reliable and comprehensive characterisation of the plankton. The aim of this study was to determine the taxonomic composition and seasonal distribution of eukaryotic plankton in the Southern Adriatic. Plankton samples were collected monthly for one year at the coastal station of the Southern Adriatic and metabarcoding was used for taxonomic identification. The results showed a high taxonomic diversity and dynamic seasonal distribution patterns for both the protist and metazoan plankton communities. Metabarcoding revealed both the core, year-round plankton community and previously unrecorded plankton organisms in the Southern Adriatic. The results provide for the first time a comprehensive overview of the plankton community in this area by metabarcoding. The identified seasonal patterns of plankton genera and species in the Southern Adriatic will contribute to the understanding of plankton interactions and future changes in community diversity characterisation. [ABSTRACT FROM AUTHOR]

Picophytoplankton are a ubiquitous component of marine plankton communities and are expected to be favored by global increases in seawater temperature and stratification associated with climate change. Eukaryotic and prokaryotic picophytoplankton have distinct ecology, and global models predict that the two groups will respond differently to future climate scenarios. At a nearshore observatory on the Northeast US Shelf, however, decades of year‐round monitoring have shown these two groups to be highly synchronized in their responses to environmental variability. To reconcile the differences between regional and global predictions for picophytoplankton dynamics, we here investigate the picophytoplankton community across the continental shelf gradient from the nearshore observatory to the continental slope. We analyze flow cytometry data from 22 research cruises, comparing the response of picoeukaryote and Synechococcus communities to environmental variability across time and space. We find that the mechanisms controlling picophytoplankton abundance differ across taxa, season, and distance from shore. Like the prokaryote, Synechococcus, picoeukaryote division rates are limited nearshore by low temperatures in winter and spring, and higher temperatures offshore lead to an earlier spring bloom. Unlike Synechococcus, picoeukaryote concentration in summer decreases dramatically in offshore surface waters and exhibits deeper subsurface maxima. The offshore picoeukaryote community appears to be nutrient limited in the summer and subject to much greater loss rates than Synechococcus. This work both produces and demonstrates the necessity of taxon‐ and site‐specific knowledge for accurately predicting the responses of picophytoplankton to ongoing environmental change. [ABSTRACT FROM AUTHOR]

Long-term monitoring of coupled environmental and biological components in upwelling ecosystems is critical for early warning under the global warming context. Temperature, salinity, nutrients, and plankton populations are promising indicators of the ecosystem state that help us to address the current status of the oceans and construct better predictions for the future. The Cabo Frio Upwelling System (CFUS) is a regionally productive wind-driven coastal upwelling ecosystem on the northern boundary of the South Brazilian Shelf sustaining diverse marine life including large stocks of fish and squid. Like other cold marine ecosystems, most of its functioning is likely threatened by ocean warming which emphasizes the need for ecological indicators. This study aimed to analyze the causal relationships between the temporal changes in the physical and chemical properties and the dominant planktonic communities leveraging long-term observations (20 years). The results suggested a link between the temporal changes in the ecosystem conditions and the composition of the plankton assemblage, notably an increasing proportion of dinoflagellates relative to diatoms and cladocerans relative to copepods. This increase in the proportional abundance of dinoflagellates and cladocerans over time suggests a regime shift in the plankton assemblages during the 2000s, highlighting some large phytoplankton and zooplankton groups as early indicators of productivity shifts in upwelling ecosystems.

ABSTRACT Seasonal fluctuations profoundly affect marine microeukaryotic plankton composition and metabolism, but accurately tracking these changes has been a long-standing challenge. In this study, we present a year-long metatranscriptomic data set from the Southern Bight of the North Sea, shedding light on the seasonal dynamics in temperate plankton ecosystems. We observe distinct shifts in active plankton species and their metabolic processes in response to seasonal changes. We characterized the metabolic signatures of different seasonal phases in detail, thereby revealing the metabolic versatility of dinoflagellates, the heterotrophic dietary strategy of Phaeocystis during its late-stage blooms, and stark variations in summer and fall diatom abundance and metabolic activity across nearby sampling stations. Our data illuminate the varied contributions of microeukaryotic taxa to biomass production and nutrient cycling at different times of the year and allow delineation of their ecological niches.IMPORTANCEEcosystem composition and metabolic functions of temperate marine microeukaryote plankton are strongly influenced by seasonal dynamics. Although monitoring of species composition of microeukaryotes has expanded recently, few methods also contain seasonally resolved information on ecosystem functioning. We generated a year-long spatially resolved metatranscriptomic data set to assess seasonal dynamics of microeukaryote species and their associated metabolic functions in the Southern Bight of the North Sea. Our study underscores the potential of metatranscriptomics as a powerful tool for advancing our understanding of marine ecosystem functionality and resilience in response to environmental changes, emphasizing its potential in continuous marine ecosystem monitoring to enhance our ecological understanding of the ocean's eukaryotic microbiome.

The analysis of eukaryotic environmental DNA (eDNA) in sediment has the potential for understanding past ecosystems, even for taxa lacking skeletons or preserved only as a part of necromass. Despite the paleoenvironmental and ecological importance of eukaryotic eDNA in marine sediment, the duration of remaining eDNA and the species of eDNA present in marine sediment has not been well investigated. Here, we analyzed eDNA extracted from 299 sediment samples down to 678 m below the seafloor at 40 geologically distinct sites. The results showed that eukaryotic eDNA was amplified from more than 80% of the sediments with a depositional age of less than 100,000 years. The eDNA was well conserved in anoxic sediments than in oxic sediments, with PCR success rates of 48% and 18%, respectively. The eukaryotic communities include non-benthic organisms such as marine plankton, including diatoms, dinoflagellates, and coccolithophores. A freshwater diatom genus Aulacoseira was detected in the Baltic Sea sediments from the last glacial lacustrine environment. These results provide new insights into the global-scale distribution of the past eukaryotic eDNA preserved in marine sediment. [ABSTRACT FROM AUTHOR]

Bioluminescence is ubiquitous in marine ecosystems and found in uni- and multicellular organisms. Bioluminescent displays can be used to deter predators, attract mates, and lure and hunt prey. Mechanically stimulated flash kinetics of zooplankton and dinoflagellates are life stage-dependent and species-specific, and could prove effective at identification and monitoring biodiversity in bioluminescent species. Here, we provide a comprehensive review of mechanically stimulated bioluminescence for the main dinoflagellate and zooplankton clades in marine environments and assemble known flash kinetics and spectral emission data. Instruments and methods used in measuring bioluminescence are also discussed. Applications, research gaps, perspectives, and biases in approaches to studying bioluminescence are identified. Moreover, emission kinetics of most zooplankton are very poorly known and constitute a critical gap. Lastly, available knowledge is interpreted in terms of potential future changes in global bioluminescence driven by climate change. [ABSTRACT FROM AUTHOR]

It is important to marine ecology research that plankton samples are collected without damage, especially for time series samples. Usually, most fixed-point plankton samplers are made using a pump with paddle blades in order to increase the flow rate. But it can easily injure soft plankton. In this paper, a shaftless hollow sampling pump is designed, which can provide a highly efficient driving component for the plankton sampler. The numerical model of the sampling pump is established, and the flow rate of the sampling pump at different rotational speeds is simulated by the computational fluid dynamics method. In order to obtain a higher flow rate, the influence of internal and external cavity size, blade angle, and blade number on the flow rate of the sampling pump with a constant rotational speed of the blade was simulated and discussed. The results show that the flow rate at the internal cavity is positively correlated with the inlet and outlet pressure differences of the internal cavity, and the greater the negative pressure at the outlet of the internal cavity, the greater the flow rate. When the internal and external cavity sizes are h = 14 mm, d = 52 mm, blade angle θ = 45°, and number of blades s = 5, the flow rate of the sampling pump internal cavity reaches the maximum. Finally, the feasibility of the shaftless hollow sampling pump is verified by experiments. The shaftless hollow sampling pump can realize non-destructive sampling of plankton. This paper presents a theoretical design foundation for a new non-destructive siphon sampling method for marine plankton, which is of great significance for marine plankton sampling and subsequent research. [ABSTRACT FROM AUTHOR]

Abstract Background Plankton seascape genomics studies have revealed different trends from large-scale weak differentiation to microscale structures. Previous studies have underlined the influence of the environment and seascape on species differentiation and adaptation. However, these studies have generally focused on a few single species, sparse molecular markers, or local scales. Here, we investigated the genomic differentiation of plankton at the macro-scale in a holistic approach using Tara Oceans metagenomic data together with a reference-free computational method. Results We reconstructed the F ST-based genomic differentiation of 113 marine planktonic taxa occurring in the North and South Atlantic Oceans, Southern Ocean, and Mediterranean Sea. These taxa belong to various taxonomic clades spanning Metazoa, Chromista, Chlorophyta, Bacteria, and viruses. Globally, population genetic connectivity was significantly higher within oceanic basins and lower in bacteria and unicellular eukaryotes than in zooplankton. Using mixed linear models, we tested six abiotic factors influencing connectivity, including Lagrangian travel time, as proxies of oceanic current effects. We found that oceanic currents were the main population genetic connectivity drivers, together with temperature and salinity. Finally, we classified the 113 taxa into parameter-driven groups and showed that plankton taxa belonging to the same taxonomic rank such as phylum, class or order presented genomic differentiation driven by different environmental factors. Conclusion Our results validate the isolation-by-current hypothesis for a non-negligible proportion of taxa and highlight the role of other physicochemical parameters in large-scale plankton genetic connectivity. The reference-free approach used in this study offers a new systematic framework to analyse the population genomics of non-model and undocumented marine organisms from a large-scale and holistic point of view.

Strombidium is a species‐rich genus of oligotrichid ciliates mainly inhabiting the marine pelagial. In molecular phylogenies, the genus emerged as non‐monophyletic, and cladistic analyses suggest that it is largely characterized by plesiomorphies. A reliable split of the genus and the establishment of new genera necessitate, however, support by novel morphological and/or ultrastructural features. In the present study, the arrangement and ultrastructure of trichites are proposed as taxonomically relevant characters. Strombidium biarmatum Agatha et al., 2005 differs in the trichite pattern from the type species Strombidium sulcatum and most congeners. Aside from the trichites inserting anteriorly to the girdle kinety and generating the typical funnel‐shaped complex in the posterior cell portion, the species displays additional trichites between the adoral membranelles even visible in live cells. Here, this exceptional trichite arrangement is detailed based on transmission electron microscopic investigations. In molecular phylogenies, S. biarmatum forms a monophylum with two congeners sharing its trichite arrangement. Therefore, the strombidiid genus Heteropilum nov. gen. is established with S. biarmatum as type species to also include H. paracapitatum (Song et al., 2015) nov. comb. and H. basimorphum (Martin & Montagnes, 1993) nov. comb. Further differences discovered in the trichite ultrastructure support the organelles' taxonomic significance. [ABSTRACT FROM AUTHOR]

DNA metabarcoding (DNA-MB) targeting the whole plankton community is a promising approach in studies of sediment samples from water bodies, but its effectiveness in ancient material is not well demonstrated. We applied DNA-MB of plankton in a sediment core to reconstruct the paleo-environment of Lake Shinji, Japan, through a marine lagoon/freshwater lake transition during the past 2300 years. We interpreted core-sample plankton taxonomy and habitat by reference to the modern plankton community in water samples. OTUs (operational taxonomic units) belonging to Dictyochophyceae were 81.05% of the total reads in sediments. However, Ciliophora, Copepoda and Labyrinthulea formed the majority of plankton taxa in the water samples, suggesting that they are under-represented in sediment. A drastic change in plankton composition correlated with a large decrease in sediment sulfur concentration, implying the change of aquatic environment from marine lagoon to freshwater lake. This event took place ca. 1200 CE in Lake Shinji. A 250 year-long transitional period followed, during which the total DNA sequence reads were very low. This suggests that salinity fluctuations created a hostile environment for both marine and freshwater plankton species. Our results show that DNA-MB of the whole plankton community is effective in reconstructing paleo-environments. [ABSTRACT FROM AUTHOR]

Vibrio aestuarianus is a bacterium related to mass mortality outbreaks of the Pacific oyster, Crassostrea gigas in Europe. In this study, the role of different planktonic substrates (phytoplankton cells, marine aggregates and chitin fragments) in mediating V. aestuarianus 02/041 infection of oysters was evaluated by controlled infection experiments. It was shown that phytoplankton cells and, to a greater extent, marine aggregates, significantly promote V. aestuarianus 02/041 intake by C. gigas maintained under stressful conditions in the laboratory. Such intake is associated with higher concentration of the pathogen in the bivalve hemolymph and compromised health status of infected oysters. In contrast, chitin particles do not play a significant role as transmission vector for V. aestuarianus 02/041 infecting its bivalve host. Interestingly, incorporation into marine aggregates foster extracellular proteases (ECPs) activity and a higher expression of bacterial virulence genes, that are potentially involved in bivalve infection. Results from this study contribute to elucidate transmission patterns of V. aestuarianus 02/041 to C. gigas that may be useful for the development of efficient measures to prevent and control oyster disease outbreaks. [ABSTRACT FROM AUTHOR]

The patterns of species diversity of plankton functional groups (PFGs) remain poorly understood although they matter greatly for marine ecosystem functioning. Here, we use an ensemble of empirical species distribution models for 845 plankton species to estimate the global species richness of three phytoplankton and 11 zooplankton functional groups as a function of objectively selected environmental predictors. The annual mean species richness of all PFGs decreases from the low to the high latitudes, but the steepness and the shape of this decrease vary significantly across PFGs. Pteropods, small copepods (Oithonids and Poecilostomatoids) and Salps have the steepest latitudinal gradients, whereas Amphipods and the three phytoplankton groups have the weakest ones. Temperature, irradiance and nutrient concentration are the first-order control on the latitudinal richness patterns, whilst the environmental conditions associated to upwelling systems, boundary currents and oxygen minimum zones modulate the position of the peaks and troughs in richness. The species richness of all PFGs increases with net primary production but decreases with particles size and the efficiency of the biological carbon pump. Our study puts forward emergent biodiversity–ecosystem functioning relationships and hypotheses about their underlying drivers for future field-based and modelling research. [ABSTRACT FROM AUTHOR]

Plankton are an important component of life on Earth. Since the 19th century, scientists have attempted to quantify species distributions using many techniques, such as direct counting, sizing, and classification with microscopes. Since then, extraordinary work has been performed regarding the development of plankton imaging systems, producing a massive backlog of images that await classification. Automatic image processing and classification approaches are opening new avenues for avoiding time-consuming manual procedures. While some algorithms have been adapted from many other applications for use with plankton, other exciting techniques have been developed exclusively for this issue. Achieving higher accuracy than that of human taxonomists is not yet possible, but an expeditious analysis is essential for discovering the world beyond plankton. Recent studies have shown the imminent development of real-time, in situ plankton image classification systems, which have only been slowed down by the complex implementations of algorithms on low-power processing hardware. This article compiles the techniques that have been proposed for classifying marine plankton, focusing on automatic methods that utilize image processing, from the beginnings of this field to the present day. [ABSTRACT FROM AUTHOR]

The Plankton Manifesto, launched in September 2024, advocates for the protection of plankton, emphasizing its crucial role in addressing climate change, pollution, and biodiversity loss. The Manifesto, led by Vincent Doumeizel, has garnered support from international experts and institutions, sparking discussions on conservation strategies and policy implications. The document calls for increased research, education, and international collaboration to safeguard plankton and its ecosystems. The launch event at the UN General Assembly featured high-level speakers endorsing the Manifesto, highlighting the ecological importance and economic potential of plankton. Efforts are underway to engage governments, NGOs, and scientific bodies to ensure plankton remains a priority on the global environmental agenda. [Extracted from the article]

Cobalt (Co) is a scarce but essential micronutrient for marine plankton in the Southern Ocean and coastal Antarctic seas, where dissolved cobalt (dCo) concentrations can be extremely low. This study presents total dCo and labile dCo distributions measured via shipboard voltammetry in the Amundsen Sea, the Ross Sea and Terra Nova Bay during the CICLOPS (Cobalamin and Iron Co-Limitation of Phytoplankton Species) expedition. A significantly smaller dCo inventory was observed during the 2017/2018 CICLOPS expedition compared to two 2005/2006 expeditions to the Ross Sea conducted over a decade earlier. The dCo inventory loss (∼ 10–20 pM) was present in both the surface and deep ocean and was attributed to the loss of labile dCo, resulting in the near-complete complexation of dCo by strong ligands in the photic zone. A changing dCo inventory in Antarctic coastal seas could be driven by the alleviation of iron (Fe) limitation in coastal areas, where the flux of Fe-rich sediments from melting ice shelves and deep sediment resuspension may have shifted the region towards vitamin B 12 and/or zinc (Zn) limitation, both of which are likely to increase the demand for Co among marine plankton. High demand for Zn by phytoplankton can result in increased Co and cadmium (Cd) uptake because these metals often share the same metal uptake transporters. This study compared the magnitudes and ratios of Zn, Cd and Co uptake (ρ) across upper-ocean profiles and the observed order-of-magnitude uptake trends (ρ Zn > ρ Cd > ρ Co) that paralleled the trace metal concentrations in seawater. High rates of Co and Zn uptake were observed throughout the region, and the speciation of available Co and Zn appeared to influence trends in dissolved metal : phosphate stoichiometry and uptake rates over depth. Multi-year loss of the dCo inventory throughout the water column may be explained by an increase in Co uptake into particulate organic matter and subsequently an increased flux of Co into sediments via sinking and burial. This perturbation of the Southern Ocean Co biogeochemical cycle could signal changes in the nutrient limitation regimes, phytoplankton bloom composition and carbon sequestration sink of the Southern Ocean. [ABSTRACT FROM AUTHOR]

Satellite remote sensing is a powerful tool to monitor the global dynamics of marine plankton. Previous research has focused on developing models to predict the size or taxonomic groups of phytoplankton. Here, we present an approach to identify community types from a global plankton network that includes phytoplankton and heterotrophic protists and to predict their biogeography using global satellite observations. Six plankton community types were identified from a co-occurrence network inferred using a novel rDNA 18 S V4 planetary-scale eukaryotic metabarcoding dataset. Machine learning techniques were then applied to construct a model that predicted these community types from satellite data. The model showed an overall 67% accuracy in the prediction of the community types. The prediction using 17 satellite-derived parameters showed better performance than that using only temperature and/or the concentration of chlorophyll a. The constructed model predicted the global spatiotemporal distribution of community types over 19 years. The predicted distributions exhibited strong seasonal changes in community types in the subarctic–subtropical boundary regions, which were consistent with previous field observations. The model also identified the long-term trends in the distribution of community types, which suggested responses to ocean warming. [ABSTRACT FROM AUTHOR]

For decades, marine plankton have been investigated for their capacity to modulate biogeochemical cycles and provide fishery resources. Between the sunlit (epipelagic) layer and the deep dark waters, lies a vast and heterogeneous part of the ocean: the mesopelagic zone. How plankton composition is shaped by environment has been well-explored in the epipelagic but much less in the mesopelagic ocean. Here, we conducted comparative analyses of trans-kingdom community assemblages thriving in the mesopelagic oxygen minimum zone (OMZ), mesopelagic oxic, and their epipelagic counterparts. We identified nine distinct types of intermediate water masses that correlate with variation in mesopelagic community composition. Furthermore, oxygen, NO3− and particle flux together appeared as the main drivers governing these communities. Novel taxonomic signatures emerged from OMZ while a global co-occurrence network analysis showed that about 70% of the abundance of mesopelagic plankton groups is organized into three community modules. One module gathers prokaryotes, pico-eukaryotes and Nucleo-Cytoplasmic Large DNA Viruses (NCLDV) from oxic regions, and the two other modules are enriched in OMZ prokaryotes and OMZ pico-eukaryotes, respectively. We hypothesize that OMZ conditions led to a diversification of ecological niches, and thus communities, due to selective pressure from limited resources. Our study further clarifies the interplay between environmental factors in the mesopelagic oxic and OMZ, and the compositional features of communities. [ABSTRACT FROM AUTHOR]

Marine plankton communities play a vital role in global carbon and nutrient cycles. Ensuring the robustness of these intricate ecosystems is critical for sustainable environmental management. In this paper, we apply complex network analysis to assess plankton community resilience against disturbances. We construct ecological interaction networks and simulate disruptions using four attack strategies targeting vertices and edges. Our multi-indicator evaluation scheme provides a more nuanced measure of robustness compared to single metrics. Our experiments revealed varying vulnerabilities across networks. Targeted attacks caused abrupt collapse, while random failures led to gradual decline. Identifying critical species and linkages is key to guiding protection efforts. Overall, plankton networks proved fragile, especially against deliberate attacks on central hubs. In our simulations, betweenness-based attacks were the most destructive. The multi-indicator robustness coefficient achieved better performance than individual metrics, with under 3% variance. This network methodology reveals hidden topological vulnerabilities and complements traditional plankton research. The quantitative insights provided in this paper can support marine conservation and governance. [ABSTRACT FROM AUTHOR]

Dinoflagellates constitute an abundant and diversified component of marine plankton, mostly associated with stratified conditions typical of late spring through autumn in temperate regions. Yet, difficulties with the identification of many species limit the knowledge of their composition and seasonal succession. Here we use a 3‐year V4‐18S rDNA metabarcoding dataset (4,366,007 reads, 4650 Amplicon Sequence Variants, ASVs) collected on 48 dates at the Long‐Term Ecological Research site MareChiara (LTER–MC) to explore the diversity and temporal distribution of dinoflagellates in the Gulf of Naples (Mediterranean Sea). A large fraction of dinoflagellate ASVs (55%, 68% of the reads) were assigned to 187 species in 85 genera, while 33% (23% of the reads) were attributed to undetermined Syndiniales, and the remainder to unidentified groups. A total of 147 ASVs were assigned at 100% similarity to 135 reference sequences, corresponding to 116 species, 46 of which were putative new records for the Gulf of Naples. Cluster analysis conducted on a normalized dataset of 1199 ASVs identified four sample clusters that corresponded largely to the spring, summer, autumn and winter seasons, respectively, each including samples from all 3 years. Syndiniales were particularly abundant (43.1%) in the winter cluster, whereas Gyrodinium reached higher percentages in the summer and autumn ones (38.6% and 57.8%), Gymnodiniales sensu stricto were more abundant in spring (11.5%) and Gonyaulacales in summer (13.5%). Almost half of the ASVs analysed (561) were significantly associated with one of the four seasonal clusters (p <.05). The winter group of ASVs was particularly rich (348 ASVs) and mainly consisted of naked and parasitic taxa, which are impossible to identify in routine phytoplankton observations in light microscopy. Despite biases mainly ascribed to both the incompleteness of the reference dataset and the limited resolution of the marker gene, the metabarcoding approach has provided new insights into the ecology and distribution of this important component of the plankton, highlighting its marked seasonality along with the existence of a diversified and previously overlooked dinoflagellate community in winter. [ABSTRACT FROM AUTHOR]

Among the various exometabolitic effects of marine microorganisms, massive mucilage events in the coastal zones of temperate and tropical seas are the most spectacular and environmentally important. Abundant mucilage material in the form of aggregates appears in late spring/early summer in the water column of the Adriatic Sea. These macroaggregate biopolymers originate mainly from plankton exometabolites, with both autochthonous and allochthonous components, and strongly impact the tourism, fisheries, and economy of coastal countries. In contrast to extensive studies on the structural and chemical nature of macroaggregates performed over past decades, the full elemental composition of these substances remains poorly known, which does not allow for a complete understanding of their origin, evolution, and necessary remediation measures. Here, we report the results of comprehensive analyses of 55 major and trace elements in the composition of macro aggregates collected at the surface and in the water column during massive mucilage events. Through normalization of the elemental chemical composition of the upper earth crust (UCC), river suspended material (RSM), mean oceanic plankton, and mean oceanic particulate suspended material, we demonstrate that the water column macroaggregates reflect a superposition of the signal from plankton and marine particulate matter. The surface macroaggregates were preferentially enriched in lithogenic component, and carried the signature of planktonic material. The rare earth element (REE) signal was strongly dominated by plankton and, to a lesser degree, by oceanic particulate matter, while at the same time being strongly (>80 times) impoverished compared with UCC and RSM. Taken together, the elemental composition of macroaggregates allows for distinguishing the lithogenic and biogenic impacts on the occurrence of these unique large-scale mucilage events, linked to the exometabolism of marine plankton combined with the input of allochthonous inorganic material. [ABSTRACT FROM AUTHOR]

A major premise of ecological neutral theory is that population size is inversely related to extinction risk. This idea is central to modern biodiversity conservation efforts, which often rely on abundance metrics to partially determine species extinction risk. However, limited empirical studies have tested whether extinction is indeed more probable for species with low abundances. Here we use the fossil record of Neogene radiolaria to test the relationship between relative abundance and longevity (time from first to last occurrence). Our dataset includes abundance histories for 189 polycystine radiolarian species from the Southern Ocean, and 101 species from the tropical Pacific. Using linear regression analyses, we show that neither maximum nor average relative abundance are significant predictors of longevity in either oceanographic region. This suggests that neutral theory fails to explain the plankton ecological-evolutionary dynamics we observe. Extrinsic factors are likely more important than neutral dynamics in controlling radiolarian extinction. Abundance or rarity of species in the fossil record, contrary to expectation of neutral theory, does not predict their longevity in ocean ecosystems. [ABSTRACT FROM AUTHOR]

Challengerids, phaeogromids rhizarian protists, are emblematic protists of the deep sea but are also enigmatic as they occur in very low concentrations. In previous studies, we reported on temporal changes in abundance at a near‐shore mesopelagic site, but only as part of sampling of the entire microplankton assemblage, not well‐suited for examining phaeogromids. Consequently, we turned to using a closing plankton net to provide material from large volumes of seawater, thus allowing for more robust estimates of concentrations and material for observations of living cells, to our knowledge the first made. Here, we report our results on the four most commonly occurring species: Challengeranium diadon, Challengereron willemoesii, Challengeria xiphodon, and Euphysetta lucani. In contrast to our previous report, we found that changes in concentrations were not related to water column stratification, and the four species roughly co‐varied with time. Observations of live cells revealed that all four species deploy tentacle‐like pseudopods and also very large unstructured webs of fine pseudopods. The similarities in feeding webs suggest similar prey are exploited, and the similar temporal changes in abundances suggest a common factor or factors (unknown at this time) govern their concentrations. Films of live cells are provided in Supplementary Files. [ABSTRACT FROM AUTHOR]

Tintinnids play a pivotal role in the marine plankton ecosystem and are model organisms in plankton studies. However, the biogeographic distribution type and community variation of tintinnids from coastal to open waters in the western Pacific have never been studied before. In the present study, 42 surface tintinnid samples were collected from coastal water to the western Pacific warm pool. A total of 84 tintinnid species were identified. The Kuroshio intrusion has obvious influence on tintinnid distribution and community structure. Fifty-two tintinnid species with relatively high occurrence frequency were classified into neritic, transitional, Kuroshio, warm-pool and cosmopolitan species. We verified the existence of tintinnid transitional species and community in Mixed Water between Neritic and Kuroshio Waters (KW). Tintinnid species richness, abundance, Shannon-Wiener index and Pielou index were higher in the KW than in the Warm-pool Water. The community complexity and stability was highest in the KW. Our findings provide a profound understanding of planktonic biogeography and community variation from nearshore to open waters in tropical and subtropical oceans. [ABSTRACT FROM AUTHOR]

Understanding the spatial and temporal distribution of marine plankton is essential to detect trends and predict their response to climate change. Seasonality, fronts, and dispersion by currents and eddies condition the distribution from micro- to macroscales. Here, we address comparatively the structure of planktonic protist communities and the assemblages of tintinnid and diatom species in subsurface waters of the western Weddell Sea during February 2005. We analyze to which extent the biogeographic patterns based on different hierarchical levels and ecological variables reveal spatial similarities, and how these patterns reflect frontal processes. Abundance and carbon biomass were estimated for eight groups of protists and for diatom and tintinnid taxa in relation with chlorophyll-a and environmental variables. The Weddell Sea boosted the proliferation of flagellated cells. Diatoms showed an unclear distribution trend and, with the exception of a few species, those primarily contributing to abundance were clearly others than those primarily contributing to biomass. Biogeographic patterns differed according to hierarchical levels and the ecological variables considered. All levels explored showed an uneven distribution in most of the area except for the range of latitudes between ~67°S and 70°S, where the trends were notably homogeneous. Three rich carbon biomass patches were found, two of them in shelf waters (South Orkney Islands and Filchner Trough) and a major one in the Marginal Ice Zone. Based on a disruption of species distribution, the Antarctic Slope Front-Antarctic Slope Current system is suggested to be located at 73.35°S. A refinement of previous biogeographic schemes was provided. [ABSTRACT FROM AUTHOR]

Mesoscale eddies which origin in Eastern Boundary Upwelling Systems (EBUS) such as the Canary Current System entrap nutrient rich coastal water and travel offshore while ageing. We have analyzed the protistan plankton community structures in the deep chlorophyll maximum (DCM), sub-DCM and oxygen minimum zone (OMZ) of three differently aged cyclonic EBUS eddies off Northwest Africa as well as of non-eddy affected reference sites using DNA metabarcoding. Throughout all water depths, we found that the investigated eddies generated local dispersal-driven hotspots of protistan plankton diversity in the naturally oligotrophic subtropical offshore waters off Northwest Africa. Based on the taxonomic composition of protistan plankton communities, these diversity hotspots are likely to play an important role in carbon sequestration and for regional food webs up to top predatory levels. Thereby, the life-span of an eddy emerged as an important criterion, how local offshore protistan plankton diversity is transformed quantitatively and qualitatively: each of the three eddies was characterized by notably distinct protistan plankton communities. This could be linked to the physicochemical water properties (predominantly macronutrients, temperature and salinity) of the eddies' cores and rings, which experience pronounced changes during the eddies' westward trajectories. Furthermore, we found evidence that eddy-specific deep-water protistan communities are relatively short-lived compared to the ones in the sunlit DCM. However, our results do not only witness from the importance of fine-scale physical ocean features for regional ecosystem processes, but they also show the complexity of these ocean features and that we are still far from understanding the biological processes and their driving forces in such features. [ABSTRACT FROM AUTHOR]

Understanding marine biodiversity is of paramount importance. Recently, we developed a polymerase chain reaction (PCR)‐free small‐organelle‐enriched metagenomics (SoEM) method with enhanced performance in species identification compared to multimarker DNA metabarcoding. However, this method has a problem of applicability for field surveys, for example, the need to filter large volumes of seawater. Here, we propose an improved version of the original SoEM method (SoEM pioneer version [SoEM‐pv]) for marine biodiversity assessment. There are three major contributions to this proposed SoEM method (SoEM v1.0): (1) presentation of PCR‐free protocols for seawater environmental DNA analysis; (2) provision of widely applicable optimal DNA extraction protocols that can be applied to small volumes (approximately 2 liters) of coastal waters; and (3) description of easy‐to‐use bioinformatics pipelines for analysis of the SoEM data. To validate the accuracy and sensitivity of SoEM v1.0, we evaluated the performance of the taxonomic capture capacity from seawater samples and found that, given the sample volume of 2 liters, (1) SoEM v1.0 had an approximately 5‐ to 10‐fold higher DNA extraction yield than the SoEM‐pv; (2) SoEM v1.0 had the highest taxonomic diversity compared to the other methods, 1.6‐fold higher than PCR‐based multi‐locus DNA metabarcoding and 1.2‐fold higher than shotgun metagenomic sequencing; and (3) the number of species identified did not increase proportionally with increasing sample size from 2 to 20 liters. We suggest that SoEM v1.0 is a promising and feasible method for marine eukaryotic diversity studies and expect it to be welcomed by biological oceanographers and coastal resource managers. [ABSTRACT FROM AUTHOR]

Simple Summary: Plankton are a key component of Arctic marine ecosystems, connecting all trophic levels and being involved in organic matter recycling. Our main purpose was to reveal differences in plankton characteristics in two Arctic sites that were strongly affected by the inflow of warm Atlantic waters during the period of polar night. We detected similar bacterial abundances in both regions, while other plankton parameters were significantly different. Temperature, salinity, and sampling depth shaped the plankton communities. Phytoplankton biomass also had a marked influence on microbial abundance and zooplankton assemblages. Changes in the proportions of boreal taxa suggested the Atlantification of pelagic communities, a phenomenon reported in the Arctic due to global warming. We studied the spatial patterns of the planktonic ecosystems at two Arctic sites strongly affected by Atlantic Inflow (FS, the Fram Strait; and BS, the Barents Sea). A high degree of similarity in the bacterial abundance (mean: 3.1 × 105 cells mL−1 in FS vs. 3.5 × 105 cells mL−1 in BS) was found, while other plankton characteristics were different. Bacterial biomass reached a maximum in BS (3.2–7.9 mg C m−3), while viral abundances tended to be higher in FS (2.0–5.7 × 106 particles mL−1). Larger bacterial cells were found in BS, suggesting the presence of different bacterial populations at both locations. The virus-to-bacteria ratio was significantly higher in FS than in BS (13.5 vs. 4.7). Chlorophyll a concentration was extremely low (<0.25 mg m−3). The highest zooplankton abundance was in the surface layer (919 individuals m−3 in FS vs. 602 ind. m−3 in BS). Zooplankton biomass strongly varied (1–39 mg C m−3), with the maximum in BS. High proportions of boreal taxa in the total zooplankton abundance indicate the Atlantification of pelagic ecosystems in the Arctic. Plankton indicators are correlated with temperature, salinity, and sampling depth. Strong intercorrelations were found between major plankton groups, suggesting tight links in the studied plankton ecosystems. [ABSTRACT FROM AUTHOR]

Planktonic foraminifera are unicellular marine zooplankton with calcite shells. Important characteristics of planktonic foraminifera include the preservability of calcite shells as microfossils in sediments and the recordability of environmental and ecological information as their shells were calcified. Some planktonic foraminifera species have been found to possess an endosymbiotic relationship with algae, known as 'photosymbiosis.' Overall, photosymbiosis is an evolutionary and nutritionally important ecology, and it also plays an important role in understanding the Earthʼs surface system in terms of material cycling and carbon cycling in particular. In this paper, I briefly review the current knowledge on planktonic foraminifera and photosymbiosis and outline the studies we have conducted so far with focus on the extraction of photosymbiotic signals and the biological phenomena concerning photosymbiosis. Finally, I discuss the prospects of further research on photosymbiotic marine protistan plankton. [ABSTRACT FROM AUTHOR]