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1. Evidence of coat color variation sheds new light on ancient canids.

Author

Morgane Ollivier, Anne Tresset, Christophe Hitte, Coraline Petit, Sandrine Hughes, Benjamin Gillet, Marilyne Duffraisse, Maud Pionnier-Capitan, Laetitia Lagoutte, Rose-Marie Arbogast, Adrian Balasescu, Adina Boroneant, Marjan Mashkour, Jean-Denis Vigne, and Catherine Hänni

Subjects
Medicine, Science
Abstract

We have used a paleogenetics approach to investigate the genetic landscape of coat color variation in ancient Eurasian dog and wolf populations. We amplified DNA fragments of two genes controlling coat color, Mc1r (Melanocortin 1 Receptor) and CBD103 (canine-β-defensin), in respectively 15 and 19 ancient canids (dogs and wolf morphotypes) from 14 different archeological sites, throughout Asia and Europe spanning from ca. 12 000 B.P. (end of Upper Palaeolithic) to ca. 4000 B.P. (Bronze Age). We provide evidence of a new variant (R301C) of the Melanocortin 1 receptor (Mc1r) and highlight the presence of the beta-defensin melanistic mutation (CDB103-K locus) on ancient DNA from dog-and wolf-morphotype specimens. We show that the dominant K(B) allele (CBD103), which causes melanism, and R301C (Mc1r), the variant that may cause light hair color, are present as early as the beginning of the Holocene, over 10,000 years ago. These results underline the genetic diversity of prehistoric dogs. This diversity may have partly stemmed not only from the wolf gene pool captured by domestication but also from mutations very likely linked to the relaxation of natural selection pressure occurring in-line with this process.

Published
2013
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2. Dogs accompanied humans during the Neolithic expansion into Europe

Author

Mikhail V. Sablin, László Bartosiewicz, Adrian Bălăşescu, Rivka Rabinovich, Rose-Marie Arbogast, Morgane Ollivier, Christophe Hitte, Laurent A. F. Frantz, Ophélie Lebrasseur, Stéphanie Bréhard, Marjan Mashkour, Greger Larson, Anne Tresset, Catherine Hänni, Adina Boroneanţ, Karyne Debue, Jean-Denis Vigne, Maud Pionnier-Capitan, Plateforme nationale de Paléogénétique (Palgene), École normale supérieure - Lyon (ENS Lyon), Archéozoologie, archéobotanique : sociétés, pratiques et environnements (AASPE), Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS), Queen Mary University of London (QMUL), University of Oxford [Oxford], Romanian Academy of Sciences, Etude des Civilisations de l'Antiquité (UMR 7044), Centre National de la Recherche Scientifique (CNRS)-Université Marc Bloch - Strasbourg II-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA)), The Hebrew University of Jerusalem (HUJ), Laboratoire d'Ecologie Alpine (LECA ), Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry])-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019]), Institut de Génétique et Développement de Rennes (IGDR), Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique )-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), ERC-2013-StG-337574-UNDEAD, H2020 European Research Council, NE/K005243/1 and NE/K003259/1, Natural Environment Research Council, 12676VE, Nestlé Purina, Egide Econet, PN-IIRU-TE-2014-4-0519, Authority for Scientific Research, CNCS - UEFISCDI, AAAA-A17-117022810195-3, ZIN RAS, École normale supérieure de Lyon (ENS de Lyon), University of Oxford, Étude des Civilisations de l'Antiquité : de la Préhistoire à Byzance (ARCHIMEDE), Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Université Marc Bloch - Strasbourg II-Centre National de la Recherche Scientifique (CNRS), and Université de Rennes (UR)-Centre National de la Recherche Scientifique (CNRS)-Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique )

Subjects
0301 basic medicine, Population, Zoology, Biology, DNA, Mitochondrial, Haplogroup, 03 medical and health sciences, domestication, Dogs, Bronze Age, Animals, Humans, 0601 history and archaeology, Neolithic, education, Domestication, ancient DNA, Mesolithic, education.field_of_study, Evolutionary Biology, [SDV.GEN]Life Sciences [q-bio]/Genetics, 060102 archaeology, Fossils, Agriculture, 06 humanities and the arts, Chalcolithic, Sequence Analysis, DNA, Agricultural and Biological Sciences (miscellaneous), Europe, 030104 developmental biology, Ancient DNA, Archaeology, Haplotypes, dog, General Agricultural and Biological Sciences, Human mitochondrial DNA haplogroup
Abstract

International audience; Near Eastern Neolithic farmers introduced several species of domestic plants and animals as they dispersed into Europe. Dogs were the only domestic species present in both Europe and the Near East prior to the Neolithic. Here, we assessed whether early Near Eastern dogs possessed a unique mitochondrial lineage that differentiated them from Mesolithic European populations. We then analysed mitochondrial DNA sequences from 99 ancient European and Near Eastern dogs spanning the Upper Palaeolithic to the Bronze Age to assess if incoming farmers brought Near Eastern dogs with them, or instead primarily adopted indigenous European dogs after they arrived. Our results show that European pre-Neolithic dogs all possessed the mitochondrial haplogroup C, and that the Neolithic and Post-Neolithic dogs associated with farmers from Southeastern Europe mainly possessed haplogroup D. Thus, the appearance of haplogroup D most probably resulted from the dissemination of dogs from the Near East into Europe. In Western and Northern Europe, the turnover is incomplete and haplogroup C persists well into the Chalcolithic at least. These results suggest that dogs were an integral component of the Neolithic farming package and a mitochondrial lineage associated with the Near East was introduced into Europe alongside pigs, cows, sheep and goats. It got diluted into the native dog population when reaching the Western and Northern margins of Europe.

Published
2018

3. Genomic and archaeological evidence suggest a dual origin of domestic dogs

Author

Ophélie Lebrasseur, Maud Pionnier-Capitan, Anna Linderholm, Anne Tresset, Catherine Hänni, Sandrine Hughes, Éva Ágnes Nyerges, Matthew D. Teasdale, Olivier Chassaing, Evangelos A. Dimopoulos, Victoria E. Mullin, Valeria Mattiangeli, Erika Gál, Morgane Ollivier, László Bartosiewicz, Angela R. Perri, Greger Larson, Daniel G. Bradley, Benjamin Gillet, Laurent A. F. Frantz, Mikhail V. Sablin, Marilyne Duffraisse, Jean-Denis Vigne, Marjan Mashkour, Finbar McCormick, Stéphanie Bréhard, Christophe Hitte, Adrian Bălăşescu, Keith Dobney, University of Oxford, Trinity College Dublin, Institut de Génomique Fonctionnelle de Lyon (IGFL), École normale supérieure de Lyon (ENS de Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Archéozoologie, archéobotanique : sociétés, pratiques et environnements (AASPE), Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS), Max Planck Institute for Evolutionary Anthropology [Leipzig], Max-Planck-Gesellschaft, Texas A&M University [College Station], Aristotle University of Thessaloniki, Queen's University [Belfast] (QUB), Stockholm University, Hungarian Academy of Sciences (MTA), Zoological Institute of Russian Academy of Sciences, Russian Academy of Sciences [Moscow] (RAS), National Museum of Romanian History, Centre National de Recherches Pluridisciplinaires, Institut de Génétique et Développement de Rennes (IGDR), Université de Rennes (UR)-Centre National de la Recherche Scientifique (CNRS), Department of Archaeology, University of Aberdeen, University of Aberdeen, 295729-CodeX, H2020 European Research Council, NE/K003259/1, Natural Environment Research Council, PN-II-ID-PCE-2011-3-1015, Autoritatea Natională pentru Cercetare Stiintifică, Junior Research Fellowship, BDI CNRS, University of Oxford [Oxford], École normale supérieure - Lyon (ENS Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Muséum national d'Histoire naturelle (MNHN), Max Planck Institute for Evolutionary Anthropology, and Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-IFR140-Centre National de la Recherche Scientifique (CNRS)

Subjects
0106 biological sciences, 0301 basic medicine, Mitochondrial DNA, Human Migration, [SDV]Life Sciences [q-bio], Zoology, Dual (grammatical number), DNA, Mitochondrial, 010603 evolutionary biology, 01 natural sciences, 03 medical and health sciences, Dogs, Phylogenetics, Animals, East Asia, Domestication, Phylogeny, Wolves, Multidisciplinary, Asia, Eastern, Human migration, business.industry, Haplotype, Genomics, Europe, 030104 developmental biology, Geography, Archaeology, Haplotypes, Animals, Domestic, business, Far East
Abstract

A dogged investigation of domestication The history of how wolves became our pampered pooches of today has remained controversial. Frantz et al. describe high-coverage sequencing of the genome of an Irish dog from the Bronze Age as well as ancient dog mitochondrial DNA sequences. Comparing ancient dogs to a modern worldwide panel of dogs shows an old, deep split between East Asian and Western Eurasian dogs. Thus, dogs were domesticated from two separate wolf populations on either side of the Old World. Science , this issue p. 1228

Published
2016

4. Evidence of coat color variation sheds new light on ancient canids

Author

Sandrine Hughes, Anne Tresset, Maud Pionnier-Capitan, Adrian Bălăşescu, Coraline Petit, Marjan Mashkour, Morgane Ollivier, Adina Boroneant, Marilyne Duffraisse, Rose-Marie Arbogast, Christophe Hitte, Benjamin Gillet, Catherine Hänni, Jean-Denis Vigne, Laetitia Lagoutte, Institut de Génomique Fonctionnelle de Lyon (IGFL), École normale supérieure de Lyon (ENS de Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Archéozoologie, archéobotanique : sociétés, pratiques et environnements (AASPE), Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS), Institut de Génétique et Développement de Rennes (IGDR), Université de Rennes (UR)-Centre National de la Recherche Scientifique (CNRS)-Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique ), Maison Interuniversitaire des Sciences de l'Homme - Alsace (MISHA), Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS), National Museum of Romanian History, Centre National de Recherches Pluridisciplinaires, Institute of Archaeology Vasile Parvan, PALGENE, the French National Platform of Paleogenetics, École normale supérieure - Lyon (ENS Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique )-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Centre National de la Recherche Scientifique (CNRS)-Muséum national d'Histoire naturelle (MNHN), Université de Rennes 1 (UR1), and Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Centre National de la Recherche Scientifique (CNRS)-Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique )

Subjects
0106 biological sciences, Coat, Molecular Sequence Data, lcsh:Medicine, Zoology, Locus (genetics), Biology, 010603 evolutionary biology, 01 natural sciences, DNA, Mitochondrial, 03 medical and health sciences, Dogs, Animals, lcsh:Science, Domestication, Hair Color, Alleles, 030304 developmental biology, 0303 health sciences, Genetic diversity, Multidisciplinary, Wolves, Melanism, [SDV.BA]Life Sciences [q-bio]/Animal biology, lcsh:R, Paleogenetics, Ancient DNA, Mutation, lcsh:Q, Gene pool, Research Article
Abstract

International audience; We have used a paleogenetics approach to investigate the genetic landscape of coat color variation in ancient Eurasian dog and wolf populations. We amplified DNA fragments of two genes controlling coat color, Mc1r (Melanocortin 1 Receptor) and CBD103 (canine-β-defensin), in respectively 15 and 19 ancient canids (dogs and wolf morphotypes) from 14 different archeological sites, throughout Asia and Europe spanning from ca. 12 000 B.P. (end of Upper Palaeolithic) to ca. 4000 B.P. (Bronze Age). We provide evidence of a new variant (R301C) of the Melanocortin 1 receptor (Mc1r) and highlight the presence of the beta-defensin melanistic mutation (CDB103-K locus) on ancient DNA from dog-and wolf-morphotype specimens. We show that the dominant K(B) allele (CBD103), which causes melanism, and R301C (Mc1r), the variant that may cause light hair color, are present as early as the beginning of the Holocene, over 10 000 years ago. These results underline the genetic diversity of prehistoric dogs. This diversity may have partly stemmed not only from the wolf gene pool captured by domestication but also from mutations very likely linked to the relaxation of natural selection pressure occurring in-line with this process.

Published
2013

5. New evidence for Upper Palaeolithic small domestic dogs in South-Western Europe

Author

Philippe Fosse, Maud Pionnier-Capitan, Jean-Georges Ferrié, Pierre Bodu, Michel Garcià, Guy Célérier, Jean-Denis Vigne, Céline Bemilli, Archéozoologie, archéobotanique : sociétés, pratiques et environnements (AASPE), Centre National de la Recherche Scientifique (CNRS)-Muséum national d'Histoire naturelle (MNHN), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon, Ctr Archeol Grand Quevilly, Partenaires INRAE, Université Paris Ouest Nanterre la Défense, Université Sciences et Technologies - Bordeaux 1, and Université Toulouse Le Mirail (Toulouse 2) (UTM)

Subjects
010506 paleontology, Archeology, Dog (Canis familiaris), Azilian, Taphonomy, [SDV]Life Sciences [q-bio], 01 natural sciences, Domestication, REMAINS, 0601 history and archaeology, Glacial period, Magdalenian, Mesolithic, 0105 earth and related environmental sciences, SITES, Epipaleolithic, 060102 archaeology, Dhole (Cuter alpinus), 06 humanities and the arts, Archaeology, Wolf (Canis lupus), Geography, Late Glacial, EAST, Upper Paleolithic, France
Abstract

International audience; Osteoarchaeology and genetics agree that the earliest dog domestications took place during the Upper Palaeolithic. However, they partially disagree about the process of domestication. The former indicated multiple origins, when some of the results of the latter suggested that dogs mainly came from a Chinese centre of domestication. In this study, we describe and discuss new evidence for Late Glacial small dogs in the South-West (Pont d'Ambon and Montespan) and North of France (Le Closeau). Special attention was paid to the possibility of miss-identification between small early dogs and dholes (Cuon alpinus), a middle-sized Canidae, the size of which can be similar to early small dogs. Detailed analyses of the archaeological contexts alongside that of taphonomy, morphoscopy, morphometry and pathology, identified 49 small canid remains from the three sites. They allowed us to exclude the presence of dholes and to conclude that they were all small Upper Paleolithic dogs. These, together with other more sparse discoveries, confirmed the presence of Western European Upper Paleolithic Small (WEUPS) dogs from, at least, the Middle Magdalenian to the end of the Epipaleolithic (i.e. 15,000-11,500 cal BP). As they are contemporaneous with the much larger Russian Upper Paleolithic dogs, they plea for several Euro-Asian origins for Late Palaeolithic dogs. (C) 2011 Elsevier Ltd. All rights reserved.

Published
2011

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