206 results on '"Melkote, S."'
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2. Host Immune Responses Against Peste des Petits Ruminants Virus
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Renukaradhya, Gourapura J., Shaila, Melkote S., and Munir, Muhammad, editor
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- 2015
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3. 100th Anniversary Issue of the Manufacturing Engineering Division Paper A Review of Advances in Modeling of Conventional Machining Processes: From Merchant to the Present
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Melkote, S., primary, Liang, S., additional, Özel, T., additional, Jawahir, I. S., additional, Stephenson, D. A., additional, and Wang, B., additional
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- 2022
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4. Laser-assisted microgrinding of ceramics
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Kumar, M., Melkote, S., and Lahoti, G.
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- 2011
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5. Mechanistic models of thrust force and torque in step-drilling of Al7075-T651
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Flachs, J. R., Salahshoor, M., and Melkote, S. N.
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- 2014
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6. Host Immune Responses Against Peste des Petits Ruminants Virus
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Renukaradhya, Gourapura J., primary and Shaila, Melkote S., additional
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- 2014
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7. An experimental evaluation of graphite nanoplatelet based lubricant in micro-milling
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Marcon, A., Melkote, S., Kalaitzidou, K., and DeBra, D.
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- 2010
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8. The large protein ‘L’ of Peste-des-petits-ruminants virus exhibits RNA triphosphatase activity, the first enzyme in mRNA capping pathway
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Deepa Rajagopalan, Piyush Kumar Singh, Melkote S. Shaila, Asutosh Bellur, Mohammad Yunus Ansari, and Purnima Shanmugam
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RNA Caps ,Guanylyltransferase ,Conventional mRNA capping ,Polyadenylation ,Genetic Vectors ,Gene Expression ,Biochemistry ,Article ,Virus ,Peste-des-petits-ruminants virus ,Viral Proteins ,03 medical and health sciences ,Virology ,Chlorocebus aethiops ,Peste-des-Petits-Ruminants ,Genetics ,RNA triphosphatase ,Animals ,RNA, Messenger ,Cloning, Molecular ,Vero Cells ,Molecular Biology ,030304 developmental biology ,Microbiology & Cell Biology ,0303 health sciences ,Messenger RNA ,biology ,030306 microbiology ,RNA virus ,General Medicine ,biology.organism_classification ,Molecular biology ,mRNA capping ,Acid Anhydride Hydrolases ,Enzyme Activation ,Protein L ,Morbillivirus ,Vesicular stomatitis virus ,biology.protein ,PPRV ,Peste-des-petits-ruminants virus L protein ,Baculoviridae - Abstract
Peste-des-petits-ruminants is a highly contagious and fatal disease of goats and sheep caused by non-segmented, negative strand RNA virus belonging to the Morbillivirus genus-Peste-des-petits-ruminants virus (PPRV) which is evolutionarily closely related to Rinderpest virus (RPV). The large protein 'L' of the members of this genus is a multifunctional catalytic protein, which transcribes and replicates the viral genomic RNA as well as possesses mRNA capping, methylation and polyadenylation activities; however, the detailed mechanism of mRNA capping by PPRV L protein has not been studied. We have found earlier that the L protein of RPV has RNA triphosphatase (RTPase), guanylyltransferase (GTase) and methyltransferase activities, and unlike vesicular stomatitis virus (VSV), follows the conventional pathway of mRNA capping. In the present work, using a 5'-end labelled viral RNA as substrate, we demonstrate that PPRV L protein has RTPase activity when present in the ribonucleoprotein complex of purified virus as well as recombinant L-P complex expressed in insect cells. Further, a minimal domain in the C-terminal region (aa1640-1840) of the L protein has been expressed in E. coli and shown to exhibit RTPase activity. The RTPase activity of PPRV L protein is metal-dependent and functions with a divalent cation, either magnesium or manganese. In addition, RTPase associated nucleotide triphosphatase activity (NTPase) of PPRV L protein is also demonstrated. This work provides the first detailed study of RTPase activity and identifies the RTPase domain of PPRV L protein.
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- 2018
9. Laser assisted micro-milling of hard-to-machine materials
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Melkote, S., Kumar, M., Hashimoto, F., and Lahoti, G.
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- 2009
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10. Enhancing Cavitation Intensity in Co-Flow Water Cavitation Peening With Organ Pipe Nozzles
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Vidvans, A. N., primary, Melkote, S. N., additional, and Sanders, D. G., additional
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- 2021
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11. Correction: Recombination Drives Genetic Diversification of Subspecies in a Region of Streptococcal Endemicity.
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David J. McMillan, Santosh Y. Kaul, P. V. Bramhachari, Pierre R. Smeesters, Therese Vu, M. G. Karmarkar, Melkote S. Shaila, and Kadaba S. Sriprakash
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Medicine ,Science - Published
- 2012
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12. Comparative in silico analysis of two vaccine candidates for group A streptococcus predicts that they both may have similar safety profiles
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Shaila, Melkote S., Nayak, Rabindranath, Prakash, Savitha S., Georgousakis, Melina, Brandt, Evelyn, McMillan, David J., Batzloff, Michael R., Pruksakorn, Sumalee, Good, Michael F., and Sriprakash, Kadaba S.
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- 2007
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13. Recombination drives genetic diversification of Streptococcus dysgalactiae subspecies equisimilis in a region of streptococcal endemicity.
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David J McMillan, Santosh Y Kaul, P V Bramhachari, Pierre R Smeesters, Therese Vu, M G Karmarkar, Melkote S Shaila, and Kadaba S Sriprakash
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Medicine ,Science - Abstract
Infection of the skin or throat by Streptococcus dysgalactiae subspecies equisimilis (SDSE) may result in a number of human diseases. To understand mechanisms that give rise to new genetic variants in this species, we used multi-locus sequence typing (MLST) to characterise relationships in the SDSE population from India, a country where streptococcal disease is endemic. The study revealed Indian SDSE isolates have sequence types (STs) predominantly different to those reported from other regions of the world. Emm-ST combinations in India are also largely unique. Split decomposition analysis, the presence of emm-types in unrelated clonal complexes, and analysis of phylogenetic trees based on concatenated sequences all reveal an extensive history of recombination within the population. The ratio of recombination to mutation (r/m) events (11:1) and per site r/m ratio (41:1) in this population is twice as high as reported for SDSE from non-endemic regions. Recombination involving the emm-gene is also more frequent than recombination involving housekeeping genes, consistent with diversification of M proteins offering selective advantages to the pathogen. Our data demonstrate that genetic recombination in endemic regions is more frequent than non-endemic regions, and gives rise to novel local SDSE variants, some of which may have increased fitness or pathogenic potential.
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- 2011
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14. Toward the discovery of vaccine adjuvants: coupling in silico screening and in vitro analysis of antagonist binding to human and mouse CCR4 receptors.
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Matthew N Davies, Jagadeesh Bayry, Elma Z Tchilian, Janakiraman Vani, Melkote S Shaila, Emily K Forbes, Simon J Draper, Peter C L Beverley, David F Tough, and Darren R Flower
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Medicine ,Science - Abstract
BACKGROUND:Adjuvants enhance or modify an immune response that is made to an antigen. An antagonist of the chemokine CCR4 receptor can display adjuvant-like properties by diminishing the ability of CD4+CD25+ regulatory T cells (Tregs) to down-regulate immune responses. METHODOLOGY:Here, we have used protein modelling to create a plausible chemokine receptor model with the aim of using virtual screening to identify potential small molecule chemokine antagonists. A combination of homology modelling and molecular docking was used to create a model of the CCR4 receptor in order to investigate potential lead compounds that display antagonistic properties. Three-dimensional structure-based virtual screening of the CCR4 receptor identified 116 small molecules that were calculated to have a high affinity for the receptor; these were tested experimentally for CCR4 antagonism. Fifteen of these small molecules were shown to inhibit specifically CCR4-mediated cell migration, including that of CCR4(+) Tregs. SIGNIFICANCE:Our CCR4 antagonists act as adjuvants augmenting human T cell proliferation in an in vitro immune response model and compound SP50 increases T cell and antibody responses in vivo when combined with vaccine antigens of Mycobacterium tuberculosis and Plasmodium yoelii in mice.
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- 2009
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15. Optimal Fixture Design Accounting for the Effect of Workpiece Dynamics
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Li, B. and Melkote, S. N.
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- 2001
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16. Analysis of Reactions and Minimum Clamping Force for Machining Fixtures with Large Contact Areas
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Li, B., Melkote, S. N., and Liang, S. Y.
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- 2000
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17. Disease burden due to Streptococcus dysgalactiae subsp. equisimilis (group G and C streptococcus) is higher than that due to Streptococcus pyogenes among Mumbai school children
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Bramhachari, Pallaval V., Kaul, Santosh Y., McMillan, David J., Shaila, Melkote S., Karmarkar, Mohan G., and Sriprakash, Kadaba S.
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- 2010
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18. Activated mouse T cells downregulate, process and present their surface TCR to cognate anti-idiotypic CD4+ T cells
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LAL, GIRDHARI, SHAILA, MELKOTE S, and NAYAK, RABINDRANATH
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- 2006
19. Establishment of an in vitro transcription system for Peste des petits ruminant virus
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Yunus Mohammad and Shaila Melkote S
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Peste-des-petits ruminants virus (PPRV) ,Transcription reconstitution ,RNA dependent RNA polymerase ,Morbillivirus ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Peste-des-petits ruminants virus (PPRV) is a non segmented negative strand RNA virus of the genus Morbillivirus within Paramyxoviridae family. Negative strand RNA viruses are known to carry nucleocapsid (N) protein, phospho (P) protein and RNA polymerase (L protein) packaged within the virion which possess all activities required for transcription, post-transcriptional modification of mRNA and replication. In order to understand the mechanism of transcription and replication of the virus, an in vitro transcription reconstitution system is required. In the present work, an in vitro transcription system has been developed with ribonucleoprotein (RNP) complex purified from virus infected cells as well as partially purified recombinant polymerase (L-P) complex from insect cells along with N-RNA (genomic RNA encapsidated by N protein) template isolated from virus infected cells. Results RNP complex isolated from virus infected cells and recombinant L-P complex purified from insect cells was used to reconstitute transcription on N-RNA template. The requirement for this transcription reconstitution has been defined. Transcription of viral genes in the in vitro system was confirmed by PCR amplification of cDNAs corresponding to individual transcripts using gene specific primers. In order to measure the relative expression level of viral transcripts, real time PCR analysis was carried out. qPCR analysis of the transcription products made in vitro showed a gradient of polarity of transcription from 3’ end to 5’ end of the genome similar to that exhibited by the virus in infected cells. Conclusion This report describes for the first time, the development of an in vitro transcription reconstitution system for PPRV with RNP complex purified from infected cells and recombinant L-P complex expressed in insect cells. Both the complexes were able to synthesize all the mRNA species in vitro, exhibiting a gradient of polarity in transcription.
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- 2012
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20. A Comparison of Residual Stress Induced by Fixed Abrasive Diamond Wire Sawing and Loose Abrasive Slurry Wire Sawing in Multicrystalline Silicon Wafers
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Pogue, V., Melkote, S., Prasath, R.G.R., and Danyluk, S.
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Silicon Feedstock, Crystallisation and Wafering ,Wafer-Based Silicon Solar Cells and Materials Technology - Abstract
32nd European Photovoltaic Solar Energy Conference and Exhibition; 1049-1052, The breakage of thin Silicon (Si) wafers is a significant problem that leads to lower production yields in the manufacture of Si-based solar cells. Residual stress of Si wafers is therefore a major concern due to its detrimental effect on wafer mechanical integrity. This work investigates the spatial distribution of residual stress in multicrystalline silicon (mc-Si) wafers produced by the two prevalent wire sawing methods used in industry: loose abrasive slurry wire sawing (LAWS) and fixed abrasive diamond wire sawing (DWS). The saw damage layer of ascut industrially sawn DWS and LAWS wafers was removed at 2 μm steps using wet chemical isotropic etching and residual stress was measured as a function of etch depth using a near-infrared birefringence polariscope. Results show that in as-cut wafers, DWS creates a larger number of high maximum residual shear stress locations compared to LAWS. In DWS, points of highest residual stress were aligned with wire striation lines in the direction of wire travel. In contrast, LAWS resulted in a random pattern of locations of high residual stress. After 12 μm of material removal by etching, the points of highest residual stress were localized at grain boundaries in both DWS and LAWS wafers.
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- 2016
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21. Expression and characterization of immunodominant region of fusion protein of peste des petits ruminants virus in E. coli
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Melkote S. Shaila, R. Apsana, Vinayagamurthy Balamurugan, Doddamane Rathnamma, B. M. Veeregowda, Habibur Rahman, D. S. N. Raju, S. M. Byregowda, and Sunil Abraham
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0301 basic medicine ,Microbiology & Cell Biology ,030102 biochemistry & molecular biology ,medicine.diagnostic_test ,Biology ,medicine.disease_cause ,Virology ,Molecular biology ,Fusion protein ,law.invention ,03 medical and health sciences ,030104 developmental biology ,Virus antigen ,Food Animals ,Antigen ,Ectodomain ,Western blot ,law ,medicine ,Recombinant DNA ,biology.protein ,Animal Science and Zoology ,Antibody ,Escherichia coli - Abstract
The present study envisages expression of immunodominant ectodomain of peste des petits ruminants virus (PPRV) fusion (F) protein in Escherichia coli BL21 (DE3) and its characterization to assess its immunoreactivity. The ectodomain gene sequences corresponding to 222 amino acids, was amplified from PPR vaccine virus, cloned into pET33b vector and expressed in E. coli at an optimal temperature of 37 degrees C with 1 mM IPTG for 5 h. The expressed and Ni-NTA purified PPRV F protein (31 kDa) was characterized by SDS-PAGE and Western blot using anti-his-tagged-conjugate, anti-serum raised against recombinant PPRV F protein, hyper immune serum against whole PPRV and convalescent sera from sheep and goats. The expressed protein was assessed for its immunoreactivity by ELISA and immunoblotting. The antibody response mounted against the recombinant PPRV F protein in immunized rabbits was detected by recombinant PPRV F antigen based indirect ELISA, and whole virus antigen based indirect ELISA, which indicating the native confirmation of the expressed protein in E. coli. Indirect ELISA was optimized using known true positive and negative sera with respect to PPRV antibodies in order to assess the reactivity of the PPRV F protein in detecting PPRV F antibodies in small ruminants. The E. coli expressed recombinant ectodomain of PPRV F protein exhibits immunoreactivity and was able to specifically detect PPRV antibodies in response to both vaccination and disease in natural host. (C) 2016 Elsevier B.V. All rights reserved.
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- 2016
22. JJo, a Recombinant Dimer of Conformationally Restricted Peptide Elicits Protective Response against Group A Streptococcus (GAS) Isolates from a GAS-Endemic Region
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Vidiya Ramachandran, Melkote S. Shaila, Kadaba S. Sriprakash, Raju Sunagar, and Melina M. Georgousakis
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biology ,medicine.diagnostic_test ,Immunogenicity ,Immunofluorescence ,medicine.disease_cause ,Virology ,Epitope ,Microbiology ,law.invention ,Antigen ,law ,Streptococcus pyogenes ,biology.protein ,medicine ,Recombinant DNA ,Antibody ,Opsonin - Abstract
A peptide (J14) containing conformationally restricted epitopes from the M protein of group A streptococcus (GAS) is capable of eliciting protective immune response against GAS infection. However, the protective response may be lost possibly due to its weak secondary-structure when the antigen is fused with other antigens in a recombinant polyepitope vaccine construct. We previously showed that JJo, a conformationally stabilized derivative of dimeric J14, overcomes this problem. We now show that anti JJo antibodies react with diverse GAS isolates found in the Indian sub-continent and that these antibodies are opsonic for GAS. The GAS strains used in this study were isolated from throat and skin swabs from Mumbai, Chennai and Vellore. Sera from mice immunized with recombinant JJo peptide were tested by ELISA, immunofluorescence, flow-cytometry, indirect bactericidal assay and mouse challenge assays to determine specific immunogenicity, opsonic functions and protection against an Indian isolate. We propose that JJo is a robust antigen suitable for inclusion in recombinant multi-epitope vaccines which are potentially affordable option for the pediatric population of developing countries.
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- 2011
23. RNA triphosphatase and guanylyl transferase activities are associated with the RNA polymerase protein L of rinderpest virus
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M. Gopinath and Melkote S. Shaila
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RNA Caps ,Guanosine Monophosphate ,Biology ,Methylation ,Viral Proteins ,chemistry.chemical_compound ,Transcription (biology) ,Virology ,RNA polymerase ,RNA triphosphatase ,Transferase ,Ribonucleoprotein ,Microbiology & Cell Biology ,Messenger RNA ,RNA ,DNA-Directed RNA Polymerases ,Rinderpest virus ,Nucleotidyltransferases ,Molecular biology ,Acid Anhydride Hydrolases ,Kinetics ,Protein L ,chemistry ,biology.protein ,RNA, Viral - Abstract
Rinderpest virus (RPV) large (L) protein is an integral part of the ribonucleoprotein (RNP) complex of the virus that is responsible for transcription and replication of the genome. Previously, we have shown that recombinant L protein coexpressed along with P protein (as the L–P complex) catalyses the synthesis of all viral mRNAsin vitroand the abundance of mRNAs follows a gradient of polarity, similar to the occurrencein vivo. In the present work, we demonstrate that the viral mRNAs synthesizedin vitroby the recombinant L or purified RNP are capped and methylated at the N7guanine position. RNP from the purified virions, as well as recombinant L protein, shows RNA triphosphatase (RTPase) and guanylyl transferase (GT) activities. L protein present in the RNP complex catalyses the removal ofγ-phosphate from triphosphate-ended 25 nt RNA generatedin vitrorepresenting the viral N-terminal mRNA 5′ sequence. The L protein forms a covalent enzyme–guanylate intermediate with the GMP moiety of GTP, whose formation is inhibited by the addition of pyrophosphate; thus, it exhibits characteristics of cellular GTs. The covalent bond between the enzyme and nucleotide is acid labile and alkali stable, indicating the presence of phosphoamide linkage. The C-terminal region (aa 1717–2183) of RPV L protein alone exhibits the first step of GT activity needed to form a covalent complex with GMP, though it lacks the ability to transfer GMP to substrate RNA. Here, we describe the biochemical characterization of the newly found RTPase/GT activity of L protein.
- Published
- 2009
24. Paracrine action of sFLT-1 secreted by stably-transfected Ehrlich ascites tumor cells and therapy using sFLT-1 inhibits ascites tumor growthin vivo
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Anupama E. Gururaj, Sunitha Ramachandra, Bharathi P. Salimath, Saritha S. D'Souza, and Melkote S. Shaila
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CD31 ,medicine.medical_specialty ,Angiogenesis ,Transfection ,Mice ,chemistry.chemical_compound ,Paracrine signalling ,Nude mouse ,In vivo ,Internal medicine ,Paracrine Communication ,Drug Discovery ,Genetics ,medicine ,Animals ,Molecular Biology ,Genetics (clinical) ,Cell Proliferation ,Microbiology & Cell Biology ,Tube formation ,Vascular Endothelial Growth Factor Receptor-1 ,Neovascularization, Pathologic ,biology ,Ascites ,Reproducibility of Results ,biology.organism_classification ,Recombinant Proteins ,Rats ,Vascular endothelial growth factor ,Endocrinology ,Solubility ,chemistry ,embryonic structures ,Cancer research ,Molecular Medicine ,Baculoviridae - Abstract
Background Vascular endothelial growth factor (VEGF) is known to play a major role in angiogenesis. A soluble form of Flt-1, a VEGF receptor, is potentially useful as an antagonist of VEGF, and accumulating evidence suggests the applicability of sFlt-1 in tumor suppression. In the present study, we have developed and tested strategies targeted specifically to VEGF for the treatment of ascites formation.Methods As an initial strategy, we produced recombinant sFLT-1 in the baculovirus expression system and used it as a trap to sequester VEGF in the murine ascites carcinoma model. The effect of the treatment on the weight of the animal, cell number, ascites volume and proliferating endothelial cells was studied. The second strategy involved, producing Ehrlich ascites tumor (EAT) cells stably transfected with vectors carrying cDNA encoding truncated form of Flt-1 and using these cells to inhibit ascites tumors in a nude mouse model. Results The sFLT-1 produced by the baculovirus system showed potent antiangiogenic activity as assessed by rat cornea and tube formation assay. sFLT-1 treatment resulted in reduced peritoneal angiogenesis with a concomitant decrease in tumor cell number, volume of ascites, amount of free VEGF and the number of invasive tumor cells as assayed by CD31 staining. EAT cells stably transfected with truncated form of Flt-1 also effectively reduced the tumor burden in nude mice transplanted with these cells, and demonstrated a reduction in ascites formation and peritoneal angiogenesis. Conclusions The inhibition of peritoneal angiogenesis and tumor growth by sequestering VEGF with either sFlt-1 gene expression by recombinant EAT cells or by direct sFLT-1 protein therapy is shown to comprise a potential therapy. Copyright (C) 2009 John Wiley & Sons, Ltd.
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- 2009
25. Characterization of T-cell immunogenicity of two PE/PPE proteins of Mycobacterium tuberculosis
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R. Nayak, M. G. Chaitra, and Melkote S. Shaila
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DNA, Bacterial ,Microbiology (medical) ,T-Lymphocytes ,T cell ,Genes, MHC Class I ,Major histocompatibility complex ,Microbiology ,Epitope ,Cell Line ,Immunophenotyping ,Mycobacterium tuberculosis ,Mice ,Bacterial Proteins ,Vaccines, DNA ,medicine ,Antigenic variation ,Animals ,Humans ,Tuberculosis Vaccines ,Cell Proliferation ,Microbiology & Cell Biology ,Antigens, Bacterial ,Mice, Inbred BALB C ,biology ,Immunogenicity ,General Medicine ,Cytotoxicity Tests, Immunologic ,biology.organism_classification ,medicine.anatomical_structure ,biology.protein ,Tuberculosis vaccines ,Spleen ,CD8 ,Protein Binding - Abstract
The PE and PPE proteins ofMycobacterium tuberculosisform a source of antigenic variation among different strains of this bacterium. Two of the PE_PGRS protein-encoding genes,rv3812andrv3018c, are expressed in pathogenic mycobacteria and are implicated, respectively, in the persistence of the organism in macrophages and in virulence. Peptides derived from these proteins have been predicted to bind major histocompatibility complex (MHC) class I with high affinity on the basis of immunoinformatics analysis, suggesting a possible role for these proteins in antimycobacterial immunity. In the present work, using DNA constructs containing therv3812andrv3018cgenes ofM. tuberculosis, the immunogenicity of these proteins was demonstrated in BALB/c mice. Immunization with either DNA construct induced a significant number of CD8+-type T cells and a strong Th1-type response, with high gamma interferon (IFN-γ) and low interleukin-4 responses. Three nonameric peptides of Rv3812 and two of Rv3018c elicited a strong T-cell response in an MHC-restricted manner. An epitope-specific response was demonstrated by the lysis of peptide-pulsed antigen-presenting cells, release of perforin and IFN-γproduction. Experimentally, these peptides bound with high affinity to MHC H-2Kdand showed low dissociation rates of peptide–MHC complexes. This study suggests that the identified T-cell epitopes may contribute to immunity against tuberculosis if included in a vaccine.
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- 2008
26. Detection of interferon gamma-secreting CD8+ T lymphocytes in humans specific for three PE/PPE proteins of Mycobacterium tuberculosis
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M. G. Chaitra, R. Nayak, and Melkote S. Shaila
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Cytotoxicity, Immunologic ,Immunology ,Human leukocyte antigen ,CD8-Positive T-Lymphocytes ,Microbiology ,Epitope ,Mycobacterium tuberculosis ,Interferon-gamma ,Immune system ,Bacterial Proteins ,medicine ,Humans ,Cytotoxic T cell ,Interferon gamma ,Cells, Cultured ,Cell Proliferation ,biology ,Cytotoxicity Tests, Immunologic ,biology.organism_classification ,Mycobacterium bovis ,In vitro ,Infectious Diseases ,Leukocytes, Mononuclear ,CD8 ,medicine.drug - Abstract
The PE and PPE family of proteins of Mycobacterium tuberculosis have been hypothesized to play important roles in the biology of the organism and some proteins have been shown to be involved in eliciting T-cell responses. Earlier, we had identified putative HLA class I binding epitopes of the PE and PPE proteins of Mycobacterium tuberculosis employing computational and molecular modeling approaches. In the present work, three of the PE/PPE family proteins, coded by Rv1818c, Rv3812 and Rv3018c genes, were selected based on the computational analysis for testing human immune responses. PBMCs from patients with active tuberculosis and healthy, BCG vaccinated, PPD-positive individuals were tested for in vitro proliferative response and gamma-interferon production using synthetic peptides derived from the chosen proteins. Significant differences were seen in the responsiveness between healthy controls and patients. Antigen-specific T-cell lines were established from the PBMCs of healthy controls and their responses to peptide-specific CD8+ T-cell effectors were shown to be present at high frequency in the PBMCs of PPD+ controls. The T-cell lines also showed cytotoxic activity against the peptide pulsed monocytes.
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- 2008
27. Computational analysis of proteome of H5N1 avian influenza virus to define T cell epitopes with vaccine potential
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Melkote S. Shaila, R. Nayak, Sumanta Mukherjee, Nagasuma Chandra, and R. Parida
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Models, Molecular ,Proteome ,Influenza vaccine ,Protein subunit ,Epitopes, T-Lymphocyte ,medicine.disease_cause ,Virus ,Epitope ,BioInformatics Centre ,medicine ,Animals ,Humans ,Neutralizing antibody ,Microbiology & Cell Biology ,Influenza A Virus, H5N1 Subtype ,General Veterinary ,General Immunology and Microbiology ,biology ,Histocompatibility Antigens Class I ,Histocompatibility Antigens Class II ,Public Health, Environmental and Occupational Health ,Virology ,Influenza A virus subtype H5N1 ,Infectious Diseases ,Influenza Vaccines ,biology.protein ,Epitopes, B-Lymphocyte ,Molecular Medicine ,Peptides ,Neuraminidase ,Protein Binding - Abstract
The existing vaccines against influenza are based on the generation of neutralizing antibody primarily directed against surface proteins-hernagglutinin and neuraminidase. In this work, we have computationally defined conserved T cell epitopes of proteins of influenza virus H5N1 to help in the design of a vaccine with haplotype specificity for a target population. The peptides from the proteome of H5NI irus which are predicted to bind to different HLAs, do not show similarity with peptides of human proteorne and are also identified to be generated by proteolytic cleavage. These peptides could be made use of in the design of either a DNA vaccine or a subunit vaccine against V influenza. (c) 2007 Elsevier Ltd. All rights reserved.
- Published
- 2007
28. Immunization of mice with DNA coding for the variable regions of anti-idiotypic antibody generates antigen-specific response
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R. Nayak, Janakiraman Vani, and Melkote S. Shaila
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Male ,T-Lymphocytes ,T cell ,Biology ,Immunoglobulin light chain ,Major histocompatibility complex ,Antibodies ,Immunoglobulin G ,Epitope ,Cell Line ,Epitopes ,Mice ,Antigen ,Antibody Specificity ,Escherichia coli ,Vaccines, DNA ,medicine ,Animals ,Cloning, Molecular ,Cell Proliferation ,Microbiology & Cell Biology ,B-Lymphocytes ,Mice, Inbred BALB C ,General Veterinary ,General Immunology and Microbiology ,Reverse Transcriptase Polymerase Chain Reaction ,T-cell receptor ,Public Health, Environmental and Occupational Health ,Antibodies, Monoclonal ,DNA ,Flow Cytometry ,Recombinant Proteins ,Hemagglutinins ,Infectious Diseases ,medicine.anatomical_structure ,Antibody Formation ,Immunology ,biology.protein ,Cytokines ,Molecular Medicine ,Immunization ,Antibody ,Immunologic Memory ,T-Lymphocytes, Cytotoxic - Abstract
Understanding the mechanisms of generation and maintenance of immunological memory is crucial for rational vaccine design.Ahypothesis known as relay hypothesis was earlier proposed which explains the maintenance of immunological memory through interaction of idiotypic and anti-idiotypic lymphocytes. In the present study, we have shown that immunization with rinderpest virus hemagglutinin protein specific anti-idiotypic antibody $(Ab2v_\beta)$ DNAs coding for heavy and light chains generates antigen-specific antibody and T cell responses as well as Ab1 specific T cell response. We further show that boosting with the recombinant $Ab_2-v_\beta$ proteins generates B and T cell memory response specific for antigen in anti-id DNA primed mice. This study provides experimental evidence for perpetuation of immunological memory through idiotypic network interactions.
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- 2007
29. Evidence for N-7 guanine methyl transferase activity encoded within the modular domain of RNA-dependent RNA polymerase L of a Morbillivirus
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M. Gopinath and Melkote S. Shaila
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Microbiology & Cell Biology ,Messenger RNA ,Five-prime cap ,viruses ,RNA-dependent RNA polymerase ,Translation (biology) ,General Medicine ,Methylation ,RNA polymerase complex ,Biology ,Molecular biology ,law.invention ,chemistry.chemical_compound ,chemistry ,law ,Virology ,RNA polymerase ,Genetics ,Recombinant DNA ,Molecular Biology - Abstract
Post-transcriptional modification of viral mRNA is essential for the translation of viral proteins by cellular translation machinery. Due to the cytoplasmic replication of Paramyxoviruses, the viral-encoded RNA-dependent RNA polymerase (RdRP) is thought to possess all activities required for mRNA capping and methylation. In the present work, using partially purified recombinant RNA polymerase complex of rinderpest virus expressed in insect cells, we demonstrate the in vitro methylation of capped mRNA. Further, we show that a recombinant C-terminal fragment (1717-2183 aa) of L protein is capable of methylating capped mRNA, suggesting that the various post-transcriptional activities of the L protein are located in independently folding domains.
- Published
- 2015
30. Immunization of sheep with DNA coding for the variable region of anti-idiotypic antibody generates humoral and cell mediated immune responses specific for peste des petits ruminants virus
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Shrikrishna Isloor, Rizvan Apsana, and Melkote S. Shaila
- Subjects
Population ,Sheep Diseases ,Enzyme-Linked Immunosorbent Assay ,Biology ,Rinderpest ,Rinderpest virus ,DNA vaccination ,Peste-des-petits-ruminants virus ,Antigen ,Neutralization Tests ,Peste-des-Petits-Ruminants ,Vaccines, DNA ,Animals ,Lymphocytes ,Neutralizing antibody ,education ,Antigens, Viral ,Microbiology & Cell Biology ,education.field_of_study ,Immunity, Cellular ,Attenuated vaccine ,Sheep ,General Veterinary ,Viral Vaccines ,General Medicine ,biology.organism_classification ,Virology ,Antibodies, Anti-Idiotypic ,Immunity, Humoral ,Vaccination ,Immunology ,biology.protein - Abstract
Peste des Petits Ruminants (PPR) is a highly contagious transboundary animal disease of wild and domestic small ruminants and notifiable byworld organization for animal health (OIE). It constitutes a serious threat to livestock production in many developing countries, in western Africa and southern Asia. The disease is caused by peste des petits ruminants virus (PPRV), a negative sense, single stranded RNAvirus belonging to the genus Morbillivirus of the family Paramyxoviridae (Gibbs et al. 1979). PPRV causes huge disease burden on agriculture across developing world, affecting small ruminant production and in turn increases poverty in some of the poorest parts of the world (Banyard et al. 2010). In PPR endemic regions of the world, conventional live attenuated vaccines are being used to vaccinate small ruminants (Diallo et al. 1989). Currently, the original Nigerian strain of PPRV (Nig 75/1) is used in the African countries (Diallo 2003). In India, three Indian strains of PPRV have been attenuated and shown to provide protective immunity (Saravanan et al. 2010). Although the live attenuated vaccines are efficacious, they suffer from the same draw back as that of live attenuated Rinderpest vaccine in terms of heat stability. This puts severe constraints on the coverage of small ruminant’s population during vaccination campaigns. Although there is one report of a method for making a heat stable live attenuated vaccine (Worrwall et al. 2000), such a thermo stable vaccine has not been put to use or field tested. Another major disadvantage of using live attenuated vaccine is that the antibody responses they induce in animals cannot be distinguished from those following a natural infection. This makes sero-epidemio surveillance of the disease impossible in endemic areas where a vaccination programme has been or is being implemented. The immune response to a given antigen can be regulated by a number of idiotypic determinants (Ids), and its counterpart, an anti-idiotypic antibody (anti-Id) or Ab2 (Jerne 1974). An idiotype is located on the variable regions of antibody molecules. An internal image anti-Id, Ab2 β recognizes an idiotypic determinant within the antigen combining site and bears a structural resemblance to the original antigen (Bona and Kohler 1984). The internal image Ab2 β antibodies have been shown to induce specific immune responses to hepatitis B surface antigen in chimpanzees (Kennedy et al. 1986) and as a vaccine candidate for the control of bluetongue infection by functionally mimicking VP7 antigen of bluetongue virus (Zhou and Lin 1997). We had earlier demonstrated that an internal image Ab2 against Rinderpest virus/Peste des petits Ruminants virus H/HN protein elicits virus neutralizing antibodies as well as T cell responses in the mouse model (Vani et al. 2007a). Further, using the mouse model, DNA encoding VH region of Ab2 elicited both neutralizing antibody and T cell responses, in the complete absence of viral antigen and these responses were long lasting (Vani et al. 2007b). * M. S. Shaila shaila@mcbl.iisc.ernet.in
- Published
- 2015
31. Host Immune Responses Against Peste des Petits Ruminants Virus
- Author
-
Melkote S. Shaila and Gourapura J. Renukaradhya
- Subjects
Peste-des-Petits-Ruminants ,Innate immune system ,biology ,animal diseases ,chemical and pharmacologic phenomena ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,Acquired immune system ,Virology ,Virus ,Measles virus ,Vaccination ,Immune system ,Peste-des-petits-ruminants virus ,bacteria - Abstract
The immune responses to morbilliviruses generated in the respective hosts are contributed by the hosts’ innate immune system as well as the adaptive immune system. While the innate immune responses against peste des petits ruminants’ virus (PPRV) have not been investigated till date to any extent, a limited number of reports exist providing information on the adaptive immune responses elicited to either PPRV infection or to vaccination. For other members of this genus, specifically measles virus, cellular and molecular level investigations have thrown light on the functioning of the molecules of the innate immune system as well as details of humoral and cellular immune mechanisms. This chapter highlights the limited knowledge on the humoral and cell-mediated immune responses in sheep/goats upon infection by PPRV or vaccination. A small section is devoted to provide information on what is known about immune suppressive effects of morbillivirus infections in general and PPRV infection wherever known.
- Published
- 2014
32. Leader RNA of Rinderpest virus binds specifically with cellular La protein: a possible role in virus replication
- Author
-
Saumitra Das, Tamal Raha, Renuka Pudi, and Melkote S. Shaila
- Subjects
Cancer Research ,Transcription, Genetic ,5.8S ribosomal RNA ,RNA-dependent RNA polymerase ,Biology ,Kidney ,Virus Replication ,Autoantigens ,Cell Line ,Transcription (biology) ,Virology ,Sense (molecular biology) ,Animals ,Humans ,Microbiology & Cell Biology ,RNA ,Haplorhini ,Rinderpest virus ,Non-coding RNA ,RNA silencing ,Infectious Diseases ,Ribonucleoproteins ,Viral replication ,RNA, Viral ,5' Untranslated Regions ,HeLa Cells - Abstract
Rinderpest virus (RPV) is an important member of the Morbillivirus genus in the family Paramyxoviridae and employs a similar strategy for transcription and replication of its genome as that of other negative sense RNA viruses. Cellular proteins have earlier been shown to stimulate viral RNA synthesis by isolated nucleocapsids from purified virus or from virus-infected cells. In the present work, we show that plus sense leader RNA of RPV, transcribed from 3' end of genomic RNA, specifically interacts with cellular La protein employing gel mobility shift assay as well as UV cross-linking of leader RNA with La protein. The leader RNA synthesized in virus-infected cells was shown to interact with La protein by immunoprecipitation of leader RNA bound to La protein and detecting the leader RNA in the immunoprecipitate by Northern hybridization with labeled antisense leader RNA. Employing a minireplicon system, we demonstrate that transiently expressed La protein enhances the replication/transcription of the RPV minigenome in cells. Sub-cellular immunolocalization shows that La protein is redistributed from nucleus to the cytoplasm upon infection. Our results strongly suggest that La protein may be involved in regulation of Rinderpest virus replication.
- Published
- 2004
33. Phosphoprotein of the Rinderpest Virus Forms a Tetramer through a Coiled Coil Region Important for Biological Function
- Author
-
Narayanaswamy Shamala, Melkote S. Shaila, Naryanaswamy Srinivasan, and Abdur Rahaman
- Subjects
Microbiology & Cell Biology ,Coiled coil ,biology ,Physics ,viruses ,RNA ,Cell Biology ,Molecular Biophysics Unit ,biology.organism_classification ,Biochemistry ,Molecular biology ,Sendai virus ,Tetramer ,Transcription (biology) ,Phosphoprotein ,biology.protein ,Biophysics ,Protein oligomerization ,Molecular Biology ,Polymerase - Abstract
Phosphoprotein (P) of negative sense RNA viruses functions as a transcriptional transactivator of the viral polymerase (L). We report here the characterization of oligomeric P protein of rinderpest virus (RPV) and provide a structural basis for its multimerization. By size exclusion chromatography and dynamic light scattering analyses we show that bacterially expressed P protein exists as an oligomer, thus excluding the role of phosphorylation in P protein oligomerization. Gel filtration analyses of various parts of the P protein, also expressed in Escherichia coli, revealed that the predicted coiled coil region in the C-terminal domain is responsible for P protein oligomerization. Dynamic light scattering analysis confirmed the oligomeric nature of the coiled coil region of P. Chemical cross-linking analysis suggested that the C-terminal coiled coil region exists as a tetramer. The tetramer is formed by coiled coil interaction as shown by circular dichroism spectral analysis. Based on sequence homology, we propose a three-dimensional structure of the multimerization domain of RPV P using the crystal structure for multimerization domain of sendai virus (SeV) P as a template. Four-stranded coiled coil structure of the model is stabilized by a series of interactions predominantly between short nonpolar side chains emerging from different strands. In an in vivo replication/transcription system using a synthetic minigenome of RPV, we show that multimerization is essential for P protein function(s), and the multimerization domain is highly conserved between two morbilliviruses namely RPV and peste de petits ruminants virus. These results are discussed in the context of biological functions of P protein among various negative- stranded RNA viruses.
- Published
- 2004
34. Analysis of the Role of Oligosaccharides in the Apoptotic Activity of Glycodelin A
- Author
-
Rajesh Jayachandran, Melkote S. Shaila, and Anjali A. Karande
- Subjects
Adult ,Male ,Glycan ,Glycosylation ,T-Lymphocytes ,T cell ,Apoptosis ,Pregnancy Proteins ,Biology ,Biochemistry ,Jurkat Cells ,chemistry.chemical_compound ,Extracellular ,medicine ,Humans ,Inducer ,Secretion ,Molecular Biology ,Glycoproteins ,Microbiology & Cell Biology ,Mutagenesis ,Cell Biology ,Middle Aged ,Cell biology ,carbohydrates (lipids) ,Glutamine ,medicine.anatomical_structure ,Glycodelin ,chemistry ,Mutation ,Mutagenesis, Site-Directed ,biology.protein ,Female ,Asparagine ,Dimerization - Abstract
Glycodelin A, also known as placental protein-14, is a multifunctional glycosylated protein secreted by the uterine endometrium during the early phases of pregnancy.It is a known suppressor of T cell proliferation, inducer of T cell apoptosis, and inhibitor of sperm zona binding. Unlike in contraceptive activity, where the glycans on the molecule have been shown to play a crucial role, mutagenesis of the asparagines at sites of N-linked glycosylation $(Asn^{28}$ and $Asn^{63})$ to glutamine shows that the apoptogenic activity of glycodelin A is executed by the protein backbone. Glycosylation at $Asn^{28}$ appears to play a role in the extracellular secretion of the molecule, as mutation of $Asn^{28}$ resulted in a significant decrease in the amount of secreted protein, and loss of both glycosylation sites reduced the secretion drastically. Our results also suggest that the loss of glycosylation does not affect the dimerization status of the molecule.
- Published
- 2004
35. Expression of biologically active Hemagglutinin-neuraminidase protein of Peste des petits ruminants virus in transgenic pigeonpea [Cajanus cajan (L) Millsp.]
- Author
-
Melkote S. Shaila, V. V. Satyavathi, Venkatesh Prasad, K.M Valli, Sanjaya, G. Lakshmi Sita, and Abha Khandelwal
- Subjects
Microbiology & Cell Biology ,biology ,Transgene ,fungi ,food and beverages ,Hemagglutinin (influenza) ,Plant Science ,General Medicine ,Agrobacterium tumefaciens ,biology.organism_classification ,Virology ,Cajanus ,Transformation (genetics) ,Genetics ,biology.protein ,HN Protein ,Mononegavirales ,Agronomy and Crop Science ,Hemagglutinin-neuraminidase - Abstract
Hemagglutinin-neuraminidase (HN) gene of Peste des petits ruminants virus (PPRV) has been expressed in pigeonpea for the development of an edible vaccine for Peste des Petits ruminant (PPR). PPRV, causes PPR disease in sheep and goats with high mortality rate. The two surface glycoproteins of PPRV Hemagglutinin-neuraminidase and fusion protein (F) confer protective immunity. We report the successful generation of transgenic pigeonpea (Cajanus cajan (L.) Millsp.) plants and expression of HN protein having biological activity. A 2 fragment containing the coding region of the HN gene from an Indian isolate was cloned into the binary vector pBI121 and mobilized into Agrobacterium tumefaciens strain GV3 101. Cotyledonary nodes from germinated seeds of pigeonpea were used for transformation. The presence of transgenes, NPTII and HN in the plants was confirmed by PCR. The expression of HN protein in the transgenic lines was further confirmed by Western blot analysis using polyclonal monospecific antibody to HN and more importantly plant-derived HN protein was shown to be biologically active as demonstrated by neuraminidase activity. Transgenic plants were fertile and PCR of $T_1$ plants confirmed the inheritance of the transgene.
- Published
- 2004
36. Engineering hemagglutinin (H) protein of rinderpest virus into peanut (Arachis hypogaea L.) as a possible source of vaccine
- Author
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Abha Khandelwal, Perumal Venkatachalam, G. Lakshmi Sita, N. Geetha, K.J.M. Vally, and Melkote S. Shaila
- Subjects
Microbiology & Cell Biology ,Arachis ,biology ,Paramyxoviridae ,Transgene ,food and beverages ,Plant Science ,General Medicine ,Genetically modified crops ,Hemagglutinin ,biology.organism_classification ,Rinderpest virus ,Virology ,Virus ,Genetics ,Mononegavirales ,Agronomy and Crop Science - Abstract
Development of transgenic plants as an expression system for the delivery of recombinant subunit vaccine through fodder would represent the most efficient and economical means of mass immunization of domestic ruminants as well as susceptible wild life. Rinderpest virus causes a highly contagious disease in cattle, buffaloes, sheep, goats and wild ruminants with a high mortality rate. We have developed transgenic peanut (Arachis hypogea L.) plants expressing the hemagglutinin (H) protein of rinderpest virus. The transgenic peanut plants were produced by Agrobacterium-mediated transformation of shoot apices. The presence and integration of the transgene has been verified by PCR and Southern hybridization. The expression of the hemagglutinin protein was confirmed by immunoblotting analysis employing polyclonal H antibody. The expression of hemagglutinin protein in T1 generation demonstrates the stable integration of H gene into the plant genome.
- Published
- 2003
37. Oral immunization of cattle with hemagglutinin protein of rinderpest virus expressed in transgenic peanut induces specific immune responses
- Author
-
Abha Khandelwal, G. Lakshmi Sita, and Melkote S. Shaila
- Subjects
Arachis ,Paramyxoviridae ,Administration, Oral ,Antibodies, Viral ,Rinderpest ,Rinderpest virus ,Article ,Virus ,Microbiology ,Adjuvants, Immunologic ,Morbillivirus ,Neutralization Tests ,Chlorocebus aethiops ,Animals ,Lymphocytes ,Hemagglutinin ,Mononegavirales ,Antigens, Viral ,Vero Cells ,Immunization Schedule ,Microbiology & Cell Biology ,Vaccines, Synthetic ,General Veterinary ,General Immunology and Microbiology ,biology ,Oral immunogenicity ,Public Health, Environmental and Occupational Health ,Viral Vaccines ,Plants, Genetically Modified ,biology.organism_classification ,Immunohistochemistry ,Virology ,Transgenic peanut ,Hemagglutinins ,Infectious Diseases ,Antibody Formation ,biology.protein ,Molecular Medicine ,Cattle ,Antibody ,Cell Division - Abstract
Rinderpest is an acute, highly contagious often fatal disease of large and small ruminants, both domestic and wild. Global eradication of rinderpest needs a robust, safe and cost-effective vaccine. The causative agent, rinderpest virus (RPV) is an important member of the genus Morbillivirus in the Paramyxoviridae family. We have generated transgenic peanut (Arachis hypogea L.) plants expressing hemagglutinin protein of RPV and report here, the induction of immune responses in cattle following oral feeding with transgenic leaves expressing hemagglutinin protein without oral adjuvant. Hemagglutinin-specific antibody was detected in the serum as confirmed by immunohistochemical staining of virus-infected cells, and in vitro neutralization of virus infectivity. Oral delivery also resulted in cell-mediated immune responses.
- Published
- 2003
38. Effect of Workpiece Flatness and Surface Finish on the Holding Force of a Magnetic Chuck
- Author
-
Felix, A. and Melkote, S. N.
- Subjects
Chucks -- Usage ,Surfaces (Technology) -- Analysis ,Engineering and manufacturing industries ,Science and technology - Abstract
Magnetic chucks are commonly used for workholding in precision grinding and turning of ferromagnetic materials. The workholding force produced by the chuck is strongly influenced by the texture and form of the workpiece surface in contact with the chuck surface. This paper presents the results of an experimental investigation into the effects of workpiece surface flatness, finish, and texture on the normal and frictional workholding forces produced by a radial 4-pole electromagnetic chuck. Ring shaped case-hardened steel specimens were used in the experiments. The results show that the normal holding force decreases with increasing flatness deviation. The effect of surface roughness on the normal holding force was found to be small compared to the effect of flatness but significantly impacts the tangential holding force. The workpiece surface texture was also found to have an effect on the workholding forces.
- Published
- 1999
39. Recombinant hemagglutinin protein of rinderpest virus expressed in insect cells induces humoral and cell mediated immune responses in cattle
- Author
-
R. Nayak, Melkote S. Shaila, Gourapura J. Renukaradhya, Sangeeta Naik, G. Sinnathamby, and M. Rajasekhar
- Subjects
Rinderpest ,Paramyxoviridae ,viruses ,Cattle Diseases ,Hemagglutinins, Viral ,Hemagglutinin (influenza) ,Spodoptera ,Antibodies, Viral ,Lymphocyte Activation ,Recombinant virus ,Rinderpest virus ,Virus ,Cell Line ,Viral Proteins ,Neutralization Tests ,Animals ,Mononegavirales ,Glycoproteins ,Microbiology & Cell Biology ,Immunity, Cellular ,Vaccines, Synthetic ,General Veterinary ,General Immunology and Microbiology ,biology ,Histocompatibility Antigens Class II ,Public Health, Environmental and Occupational Health ,Viral Vaccines ,T-Lymphocytes, Helper-Inducer ,biology.organism_classification ,Virology ,Recombinant Proteins ,Infectious Diseases ,Humoral immunity ,biology.protein ,Molecular Medicine ,Cattle ,Antibody ,Baculoviridae - Abstract
Rinderpest virus causes a highly contagious and often fatal disease in domestic and wild ruminants. The surface glycoproteins, hemagglutinin (H) and fusion (F) proteins of this enveloped virus are known to confer protective immunity in cattle. We have reported the generation of a recombinant baculovirus expressing H protein and studied its protective properties in cattle. In this report, we demonstrate that the recombinant baculovirus encoded H protein expressed in insect cells gets incorporated into extracellular baculovirus. Single administration of low doses of purified recombinant extracellular virus with or without adjuvant induces virus neutralizing antibody responses and bovine leukocyte antigen (BoLA) class II restricted helper T cell responses in cattle.
- Published
- 2001
40. Idiotypic–Anti-idiotypic B Cell Interactions Generated against a Protective Antigen of a Morbillivirus in Mice
- Author
-
Melkote S. Shaila, R. Nayak, Anjali A. Karande, and Shibani Mitra-Kaushik
- Subjects
Male ,Rinderpest ,Lysis ,Immunology ,Naive B cell ,Hemagglutinins, Viral ,Biochemistry ,Germline ,Mice ,Viral Proteins ,Immunoglobulin Idiotypes ,Morbillivirus ,In vivo ,Cell Adhesion ,medicine ,Animals ,Antigens, Viral ,B cell ,Glycoproteins ,Microbiology & Cell Biology ,B-Lymphocytes ,Mice, Inbred BALB C ,Hybridomas ,biology ,Models, Immunological ,Complement System Proteins ,biology.organism_classification ,Molecular biology ,Antibodies, Anti-Idiotypic ,medicine.anatomical_structure ,Protective antigen ,biology.protein ,Female ,Antibody ,Spleen - Abstract
The idiotypic network theory (N. K. Jerne, Ann. Immunol. 125, 373–389, 1974) predicts that any antibody that can be made by an individual would have its preexisting specific complementary B cells in its germline repertoire. We transplanted syngeneic BALB/c mice with live hybridoma cells and demonstrated the simultaneous presence of interacting idiotypic and anti-idiotypic B cells in an individual animal by immuno-cytoadherence assays. Furthermore, we demonstrate that interacting B cells displaying idiotypic and anti-idiotypic antibodies are subjected to lysis by complement. It is therefore tempting to speculate that this complement-sensitive interaction between idiotypic and complementary anti-idiotypic B cells in vivo may provide a mechanism for the regulation of B cell populations.
- Published
- 2001
41. Mapping of T-Helper Epitopes of Rinderpest Virus Hemagglutinin Protein
- Author
-
Melkote S. Shaila, R. Nayak, and G. Sinnathamby
- Subjects
Rinderpest ,Molecular Sequence Data ,Immunology ,Epitopes, T-Lymphocyte ,Hemagglutinins, Viral ,Hemagglutinin (influenza) ,Virulence ,Lymphocyte Activation ,Rinderpest virus ,Virus ,Epitope ,Measles virus ,Viral Proteins ,Immune system ,Viral envelope ,Virology ,Chlorocebus aethiops ,Animals ,Amino Acid Sequence ,Vero Cells ,Glycoproteins ,Microbiology & Cell Biology ,biology ,Viral Vaccines ,T-Lymphocytes, Helper-Inducer ,biology.organism_classification ,Molecular biology ,biology.protein ,Molecular Medicine ,Cattle ,Peptides ,Epitope Mapping ,Gene Deletion - Abstract
Rinderpest virus (RPV) is a highly contagious and often fatal disease of domestic and wild ruminants, caused by rinderpest virus of the genus Morbillivirus under the family Paramyxoviridae. Hemagglutinin (H) and fusion (F) proteins of this enveloped virus confer protective immunity against experimental challenge with virulent rinderpest virus. We have earlier demonstrated that immunization with a single dose of recombinant extracellular baculovirus expressing H protein elicits H-specific humoral and lymphoproliferative responses in cattle. The lymphoproliferative responses are predominantly BoLA class II restricted. In this work, we have analyzed lymphoproliferative responses of peripheral lymphocytes from immunized cattle to truncated H protein fragments expressed in E. coli for locating domains harboring T epitopes. One region (aa 113-182) recognized by immune $T_h$ cells is conserved in the H protein of measles virus, which was earlier shown to contain a dominant $T_h$ epitope in mouse. Synthetic peptides within this region of measles virus H protein were used to identify a $T_h$ epitope conserved in the H protein of RPV virus (aa 123-137) in cattle. A second $T_h$ epitope located at the C-terminus of RPV-H was mapped to the region corresponding to aa 512-609 using truncated protein fragments expressed in E. coli. The C-terminal epitope (aa 575-583) was mapped using synthetic peptides corresponding to measles virus H as well as RPV-H protein.
- Published
- 2001
42. Rinderpest virus (RPV) ISCOM vaccine induces protection in cattle against virulent RPV challenge
- Author
-
Kenjiro Inui, Kazuya Yamanouchi, Hiroshi Kamata, Ellena Hulskotte, Kazue Ohishi, Thomas Barrett, Albert D. M. E. Osterhaus, Melkote S. Shaila, and Virology
- Subjects
Rinderpest ,Paramyxoviridae ,animal diseases ,Cattle Diseases ,Hemagglutinins, Viral ,Antibodies, Viral ,Lymphocyte Activation ,Rinderpest virus ,Virus ,Microbiology ,Viral Proteins ,Morbillivirus ,SDG 3 - Good Health and Well-being ,Neutralization Tests ,Animals ,Paramyxovirinae ,Mononegavirales ,Glycoproteins ,Microbiology & Cell Biology ,Virulence ,General Veterinary ,General Immunology and Microbiology ,biology ,Public Health, Environmental and Occupational Health ,ISCOM ,Viral Vaccines ,biology.organism_classification ,Virology ,Infectious Diseases ,Molecular Medicine ,Cattle ,ISCOMs - Abstract
Rinderpest virus (RPV), a member of genus Morbillivirus in the family Paramyxoviridae, causes an acute and often fatal disease in cattle and other large ruminants. A subunit rinderpest vaccine consisting of an immune-stimulating complex (ISCOM) incorporating the RPV haemaggulutinin (H) protein, was examined for its ability to induce protective immunity in cattle, the natural host of RPV. All of four cattle vaccinated with the ISCOM vaccine survived challenge with virulent virus. Three were solidly protected, showing no clinical signs of infection, while the fourth animal developed only mild and transient symptoms. Virus neutralizing antibodies were produced at a significant level in all vaccinated cattle. These results indicate that this ISCOM vaccine is effective in producing protective immunity in cattle and should be a suitable means of delivering glycoprotein antigens from other morbilliviruses
- Published
- 2001
43. Identification of a Cytotoxic T-Cell Epitope on the Recombinant Nucleocapsid Proteins of Rinderpest and Peste des petits ruminants Viruses Presented as Assembled Nucleocapsids
- Author
-
Melkote S. Shaila, Shibani Mitra-Kaushik, and R. Nayak
- Subjects
Rinderpest ,viruses ,Amino Acid Motifs ,Molecular Sequence Data ,Cattle Diseases ,Epitopes, T-Lymphocyte ,Lymphocyte Activation ,Rinderpest virus ,Virus ,Epitope ,Peste-des-petits-ruminants virus ,law.invention ,Mice ,law ,Virology ,MHC class I ,Animals ,Cytotoxic T cell ,Nucleocapsid ,Microbiology & Cell Biology ,Mice, Inbred BALB C ,Base Sequence ,biology ,Immunogenicity ,Histocompatibility Antigens Class I ,Nucleocapsid Proteins ,Molecular biology ,Recombinant Proteins ,CTL ,biology.protein ,Recombinant DNA ,Cattle ,Immunization ,Morbillivirus Infections ,T-Lymphocytes, Cytotoxic - Abstract
The nucleocapsid protein (N) of morbilliviruses is not only a major structural protein but also the most abundant protein made in infected cells. We overexpressed the N proteins of Rinderpest virus and Peste des petits ruminants virus in E. coli, which assemble into nucleocapsids in the absence of viral RNA that resemble nucleocapsids made in the virus-infected cells. Employing these assembled structures resembling subviral particles, we studied the induction of both the antibody response and the cytotoxic T-lymphocyte (CTL) response in a murine model (BALB/c). A single dose of the purified recombinant nucleocapsids of both viruses in the absence of an adjuvant induces a strong CTL response. The CTLs generated are antigen specific and cross-reactive with respect to each virus and, furthermore, this CTL response is MHC class I restricted. Based on the prediction for H-2d-restricted T-cell motifs we tested the lysis of transfected P815 (H-2d) cells expressing a nine amino acid potential CTL epitope, by splenic T cells in vitro restimulated with bacterially expressed RPV or PPRV N proteins. We extended our study to the bovine system both to analyze the immunogenicity of these recombinant proteins in the natural hosts and to show that PBMC from cattle vaccinated with Rinderpest vaccine proliferate in vitro, in response to restimulation with soluble nucleocapsid proteins. Furthermore, the murine CTL epitope functions in the bovine system as a cytotoxic T-cell epitope. This sequence, which is conserved in the N proteins of morbilliviruses, conforms well to the predicted algorithm for some of the most common BoLA CTL antigenic peptides.
- Published
- 2001
44. Domains of Rinderpest Virus Phosphoprotein Involved in Interaction with Itself and the Nucleocapsid Protein
- Author
-
Daniel Shaji and Melkote S. Shaila
- Subjects
Recombinant Fusion Proteins ,Two-hybrid screening ,Protein domain ,Mutant ,interaction ,yeast two-hybrid system ,Viral Proteins ,Virology ,Protein A/G ,Animals ,Gene ,Microbiology & Cell Biology ,chemistry.chemical_classification ,Coiled coil ,Binding Sites ,biology ,Nucleocapsid Proteins ,Rinderpest virus ,phosphoprotein ,Phosphoproteins ,Amino acid ,chemistry ,Biochemistry ,Phosphoprotein ,biology.protein ,Rabbits ,nucleocapsid protein - Abstract
The yeast two-hybrid system was used to identify domains involved in specific in vivo interactions between the Rinderpest virus (RPV) phosphoprotein (P) and nucleocapsid protein (N). N and P genes were cloned in both the yeast GAL4 DNA-binding and GAL4 activation domain vectors, which enabled analysis of self and interprotein interactions. Mapping of the domain of P protein involved in its association with itself revealed that the COOH-terminal 32 amino acids (316–347) that forms a part of the highly conserved coiled coil region is important for interaction. In addition, just the coiled coil region of RPV P protein fused to the DNA-binding domain and activation domain of GAL4 was found to be sufficient to bring about activation of the $\beta-$galactosidase reporter. Similarly, mapping of the domains of P protein involved in its interaction with N protein revealed that $NH_2-$terminal 59 amino acids and COOH-terminal 32 amino acids (316–347) involved in P–P interaction are simultaneously required for association with N protein. Interestingly, a P protein mutant with just the $NH_2-$terminal 59 amino acids and the coiled coil domain with all other P protein regions deleted retained its ability to interact with N protein. Furthermore, we were able to show N and P protein interaction in vitro using recombinant N and P proteins expressed in Escherichia coli, demonstrating the existence of direct physical interaction between the two proteins.
- Published
- 1999
45. In vitro and in vivo regulation of assimilatory nitrite reductase from Candida utilis
- Author
-
Melkote S. Shaila, Sagar Sengupta, and Gannamani Ramananda Rao
- Subjects
7-Dehydrocholesterol reductase ,Nitrite Reductases ,Nitrogen assimilation ,p-Chloromercuribenzoic Acid ,Biology ,Reductase ,Nitrate reductase ,Biochemistry ,Microbiology ,Ammonium Chloride ,Gene Expression Regulation, Enzymologic ,Genetics ,Cysteine ,Molecular Biology ,Candida ,Microbiology & Cell Biology ,Nitrite Reductase (NAD(P)H) ,chemistry.chemical_classification ,General Medicine ,NAD ,Nitrite reductase ,Enzyme assay ,Kinetics ,Enzyme ,chemistry ,Enzyme Induction ,Flavin-Adenine Dinucleotide ,biology.protein ,Enzyme Repression ,Chloromercuribenzoates ,NADP - Abstract
The nitrate assimilation pathway in Candida utilis, as in other assimilatory organisms, is mediated by two enzymes: nitrate reductase and nitrite reductase. Purified nitrite reductase has been shown to be a heterodimer consisting of 58- and 66-kDa subunits. In the present study, nitrite reductase was found to be capable of utilising both NADH and NADPH as electron donors. FAD, which is an essential coenzyme, stabilised the enzyme during the purification process. The enzyme was modified by cysteine modifiers, and the inactivation could be reversed by thiol reagents. One cysteine was demonstrated to be essential for the enzymatic activity. In vitro, the enzyme was inactivated by ammonium salts, the end product of the path way, proving that the enzyme is assimilatory in function. In vivo, the enzyme was induced by nitrate and repressed by ammonium ions. During induction and repression, the levels of nitrite reductase mRNA, protein, and enzyme activity were modulated together, which indicated that the primary level of regulation of this enzyme was at the transcriptional level. When the enzyme was incubated with ammonium salts in vitro or when the enzyme was assayed in cells grown with the same salts as the source of nitrogen, the residual enzymatic activities were similar. Thus, a study of the in vitro inactivation can give a clue to understanding the mechanism of in vivo regulation of nitrite reductase in Candida utilis.
- Published
- 1997
46. Immunogenic and protective properties of haemagglutinin protein (H) of Rinderpest virus expressed by a recombinant baculovirus
- Author
-
Melkote S. Shaila, Gourapura J. Renukaradhya, M. Rajasekhar, and Sangeeta Naik
- Subjects
Paramyxoviridae ,viruses ,Genetic Vectors ,Hemagglutinins, Viral ,Spodoptera ,Antibodies, Viral ,Vaccines, Attenuated ,Recombinant virus ,Rinderpest virus ,Virus ,Microbiology ,Morbillivirus ,Chlorocebus aethiops ,Animals ,Neutralizing antibody ,Vero Cells ,Microbiology & Cell Biology ,Vaccines, Synthetic ,Attenuated vaccine ,General Veterinary ,General Immunology and Microbiology ,biology ,Public Health, Environmental and Occupational Health ,Viral Vaccines ,Hemagglutinin ,biology.organism_classification ,Virology ,Nucleopolyhedroviruses ,Infectious Diseases ,biology.protein ,Molecular Medicine ,Cattle - Abstract
The hemagglutinin (H) protein of Rinderpest virus expressed by a recombinant baculo-virus used as a vaccine produced high titres of neutralizing antibody to Rinderpest virus in the vaccinated cattle, comparable to the levels produced by live attenuated vaccine. The immunized cattle were protected against a vaccine-virus challenge, as demonstrated by the failure of development of antibodies to N protein of the vaccine virus. The lack of replication of vaccine virus in the immunized cattle indicated that they are capable of showing a protective response if challenged with a virulent virus.
- Published
- 1997
47. Ductile Cutting Mode in Diamond Wire Sawing of Silicon
- Author
-
Wu, H., Yang, C., Melkote, S., and Danyluk, S.
- Subjects
WAFER-BASED SILICON SOLAR CELLS AND MATERIALS TECHNOLOGY ,Silicon Feedstock, Crystallisation and Wafering - Abstract
28th European Photovoltaic Solar Energy Conference and Exhibition; 1470-1473, This paper seeks to explain the reasons for the evidence of ductile mode of material removal commonly observed in diamond wire sawing of photovoltaic (PV) silicon wafers. This is achieved through a simplified theoretical analysis of the interaction of the diamond grits with the silicon. The cutting depth per diamond grit is analyzed based on the volume of material removed by each grit in the cutting channel. The analysis indicates that there is a square root relationship between the cutting depth per grit and the sawing parameters. Specifically, the cutting depth per grit is shown to be directly proportional to the feed rate and grit spacing along the wire, but is inversely proportional to the grit size and wire speed. For a typical diamond wire sawing condition, the cutting depth per grit is calculated to be in the range of 41 to 143nm, which is in the regime of ductile mode of material removal for silicon. The interaction between the diamond grits and silicon for a typical cutting depth per grit is further analyzed by finite element modeling and the grit-material contact force is found to be in the range of 3 to 12mN, which is similar to the critical load for ductile mode of material removal in lapping and polishing.
- Published
- 2013
- Full Text
- View/download PDF
48. Spatial Distribution of Full-Field Residual Stress and Its Correlation with Fracture Strength of Thin Silicon Wafers
- Author
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Kumar, A., Skenes, K., Prasath, R., Yang, C., Melkote, S., and Danyluk, S.
- Subjects
WAFER-BASED SILICON SOLAR CELLS AND MATERIALS TECHNOLOGY ,Silicon Feedstock, Crystallisation and Wafering - Abstract
28th European Photovoltaic Solar Energy Conference and Exhibition; 1474-1476, Residual stresses are a major concern in thin silicon wafers because of their potentially detrimental effect on mechanical properties during cell processing. Residual stresses are induced by crystal growth as well as wafering. This work investigates the correlation between the residual stress distribution in a mono-cast silicon wafer and its fracture strength variation. Full-field residual stress maps in 156 mm square as-cut mono-cast silicon wafers are measured using near infra-red polariscopy and correlated with the spatial variation of fracture strength measured using four-line bending. Results show that regions of the wafer with higher residual shear stress are correlated with lower fracture strength. Etching, which removes saw damage, shows a decrease in residual stress with a corresponding increase in fracture strength. The variation in residual stress and fracture strength in a given wafer also appears to be correlated with the grain structure in that region.
- Published
- 2013
- Full Text
- View/download PDF
49. Inhibition of replication of rinderpest virus by 5-fluorouracil
- Author
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Melkote S. Shaila, Arundhati Ghosh, and R. Nayak
- Subjects
Microbiology & Cell Biology ,Pharmacology ,Paramyxoviridae ,viruses ,RNA ,Rinderpest virus ,Biology ,Virus Replication ,biology.organism_classification ,Antiviral Agents ,Virology ,Virus ,Viral Proteins ,Viral replication ,Cell culture ,Chlorocebus aethiops ,Protein biosynthesis ,Vero cell ,Animals ,Fluorouracil ,RNA, Messenger ,Vero Cells - Abstract
5-Fluorouracil (5FU), an analogue of uracil, was found to inhibit the production of infectious particles of rinderpest virus (RPV) in Vero cells (African green monkey kidney cells) by 99%, at a concentration of 1 microgram/ml. The levels of individual mRNA specific for five of the virus genes were also reduced drastically, while the level of mRNA for a cellular housekeeping gene-glyceraldehyde-3-phosphate dehydrogenase (GAPDH)-was unaltered by fluorouracil treatment of infected cells. Both virus RNA and protein synthesis showed inhibition in a dose-dependent manner. The virions which budded out of 5-fluorouracil-treated cells also contained reduced amounts of virus proteins compared with virus particles from untreated cells.
- Published
- 1996
50. Synthesis of leader RNA and editing of P mRNA during transcription by rinderpest virus
- Author
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R. Nayak, Arundhati Ghosh, and Melkote S. Shaila
- Subjects
Cancer Research ,Transcription, Genetic ,Molecular Sequence Data ,Biology ,Rinderpest virus ,Primer extension ,Cell Line ,Viral Proteins ,Leader rna ,Transcription (biology) ,Virology ,Chlorocebus aethiops ,Animals ,Nucleotide ,RNA, Messenger ,Vero Cells ,Microbiology & Cell Biology ,chemistry.chemical_classification ,Molecular Reproduction, Development & Genetics ,Messenger RNA ,Base Sequence ,Phosphoproteins ,Molecular biology ,In vitro ,Infectious Diseases ,chemistry ,RNA editing ,DNA, Viral ,RNA, Viral ,RNA Editing - Abstract
Purified rinderpest virus was earlier shown to transcribe in vitro, all virus-specific mRNAs with the promoter-proximal N mRNA being the most abundant. Presently, this transcription system has been shown to synthesize full length monocistronic mRNAs comparable to those made in infected cells. Small quantities of bi- and tricistronic mRNAs are also synthesized. Rinderpest virus synthesizes in vitro, a leader RNA of not, vert, similar 55 nucleotides in length. Purified rinderpest virus also exhibits RNA editing activity during the synthesis of P mRNA as shown by primer extension analysis of the mRNA products.
- Published
- 1996
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