813 results on '"Minoshima, S."'
Search Results
2. PARKIN as a pathogenic gene for autosomal recessive juvenile parkinsonism
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Shimizu, N., Asakawa, S., Minoshima, S., Kitada, T., Hattori, N., Matsumine, H., Yokochi, M., Yamamura, Y., Mizuno, Y., Mizuno, Y., editor, Calne, D. B., editor, Horowski, R., editor, Poewe, W., editor, Riederer, P., editor, and Youdim, M. B. H., editor
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- 2000
- Full Text
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3. 111In Labeled Lymphocyte Scintigraphy in Patients with Malignant Lymphoma
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Uno, K., Kuyama, J., Saitoh, M., Uchida, Y., Minoshima, S., Okada, J., Itami, J., Arimizu, N., Martin-Comin, J., editor, Thakur, M. L., editor, Piera, C., editor, Roca, M., editor, and Lomeña, F., editor
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- 1994
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4. Effets de l’âge et du genre sur la perfusion cérébrale régionale étudiée par deux méthodes d’analyse statistique voxel-par-voxel
- Author
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Pirson, A.-S., Van Laere, K., George, J., Jamart, J., Krug, B., D’Asseler, Y., Minoshima, S., and Vander Borght, T.
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- 2009
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5. DaTscan: Impact on diagnosis, management, and its clinical correlation: A retrospective study: 218
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Longfellow, K., Hu, S.-C., Minoshima, S., Elman, S., Lewis, D., and Kang, A.
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- 2014
6. Progress in the clinical and molecular genetics of familial parkinsonism
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Kitada, T., Asakawa, S., Matsumine, H., Hattori, N., Shimura, H., Minoshima, S., Shimizu, N., and Mizuno, Y.
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- 2000
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7. Arterial/venous plasma nicotine concentrations following nicotine nasal spray
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Guthrie, S. K., Zubieta, J. -K., Ohl, L., Koeppe, R. A., Minoshima, S., and Domino, E. F.
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- 1999
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8. The DNA sequence of human chromosome 21
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Hattori, M., Fujiyama, A., Taylor, T. D., Watanabe, H., Yada, T., Park, H.-S., Toyoda, A., Ishii, K., Totoki, Y., Choi, D.-K., Soeda, E., Ohki, M., Takagi, T., Sakaki, Y., Taudien, S., Blechschmidt, K., Polley, A., Menzel, U., Delabar, J., Kumpf, K., Lehmann, R., Patterson, D., Reichwald, K., Rump, A., Schillhabel, M., Schudy, A., Zimmermann, W., Rosenthal, A., Kudoh, J., Shibuya, K., Kawasaki, K., Asakawa, S., Shintani, A., Sasaki, T., Nagamine, K., Mitsuyama, S., Antonarakis, S. E., Minoshima, S., Shimizu, N., Nordsiek, G., Hornischer, K., Brandt, P., Scharfe, M., Schon, O., Desario, A., Reichelt, J., Kauer, G., Blocker, H., Ramser, J., Beck, A., Klages, S., Hennig, S., Riesselmann, L., Dagand, E., Haaf, T., Wehrmeyer, S., Borzym, K., Gardiner, K., Nizetic, D., Francis, F., Lehrach, H., Reinhardt, R., and Yaspo, M.-L.
- Abstract
Author(s): M. Hattori [1]; A. Fujiyama [1]; T. D. Taylor [1]; H. Watanabe [1]; T. Yada [1]; H.-S. Park [1]; A. Toyoda [1]; K. Ishii [1]; Y. Totoki [1]; D.-K. [...]
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- 2000
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9. A Surgical Technique for a Vertebral Column Autograft Using the Intervertebral Disc for Cervical Disc Disease
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Isu, T., Minoshima, S., Takeda, M., Seki, T., Fujiwara, S., and Takebayashi, S.
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- 1998
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10. Identification of 11 novel mutations in USH2A among Japanese patients with Usher syndrome type 2
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Nakanishi, H, Ohtsubo, M, Iwasaki, S, Hotta, Y, Mizuta, K, Mineta, H, and Minoshima, S
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- 2009
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11. Preclinical evidence of Alzheimer changes in progressive mild cognitive impairment: a qualitative and quantitative SPECT study
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Ishiwata, A., Sakayori, O., Minoshima, S., Mizumura, S., Kitamura, S., and Katayama, Y.
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- 2006
12. Amyloid-PET and (18)F-FDG-PET in the diagnostic investigation of Alzheimer's disease and other dementias
- Author
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Chetelat, G., Arbizu, J., Barthel, H., Garibotto, V., Law, I., Morbelli, S., Giessen, E. van de, Agosta, F., Barkhof, F., Brooks, D.J., Carrillo, M.C., Dubois, B., Fjell, A.M., Frisoni, G.B., Hansson, O., Herholz, K., Hutton, B.F., Jack, C.R., Jr., Lammertsma, A.A., Landau, S.M., Minoshima, S., Nobili, F., Nordberg, A., Ossenkoppele, R., Oyen, W.J.G., Perani, D., Rabinovici, G.D., Scheltens, P., Villemagne, V.L., Zetterberg, H., Drzezga, A., Chetelat, G., Arbizu, J., Barthel, H., Garibotto, V., Law, I., Morbelli, S., Giessen, E. van de, Agosta, F., Barkhof, F., Brooks, D.J., Carrillo, M.C., Dubois, B., Fjell, A.M., Frisoni, G.B., Hansson, O., Herholz, K., Hutton, B.F., Jack, C.R., Jr., Lammertsma, A.A., Landau, S.M., Minoshima, S., Nobili, F., Nordberg, A., Ossenkoppele, R., Oyen, W.J.G., Perani, D., Rabinovici, G.D., Scheltens, P., Villemagne, V.L., Zetterberg, H., and Drzezga, A.
- Abstract
Contains fulltext : 229556.pdf (Publisher’s version ) (Closed access), Various biomarkers are available to support the diagnosis of neurodegenerative diseases in clinical and research settings. Among the molecular imaging biomarkers, amyloid-PET, which assesses brain amyloid deposition, and (18)F-fluorodeoxyglucose ((18)F-FDG) PET, which assesses glucose metabolism, provide valuable and complementary information. However, uncertainty remains regarding the optimal timepoint, combination, and an order in which these PET biomarkers should be used in diagnostic evaluations because conclusive evidence is missing. Following an expert panel discussion, we reached an agreement on the specific use of the individual biomarkers, based on available evidence and clinical expertise. We propose a diagnostic algorithm with optimal timepoints for these PET biomarkers, also taking into account evidence from other biomarkers, for early and differential diagnosis of neurodegenerative diseases that can lead to dementia. We propose three main diagnostic pathways with distinct biomarker sequences, in which amyloid-PET and (18)F-FDG-PET are placed at different positions in the order of diagnostic evaluations, depending on clinical presentation. We hope that this algorithm can support diagnostic decision making in specialist clinical settings with access to these biomarkers and might stimulate further research towards optimal diagnostic strategies.
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- 2020
13. Keeping pain out of mind: the role of the dorsolateral prefrontal cortex in pain modulation
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Lorenz, J., Minoshima, S., and Casey, K. L.
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- 2003
14. Temporally Overlapping Dual-Tracer PET Studies 1 1Transcripts of the BRAINPET97 discussion of this chapter can be found in Section VIII.
- Author
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KOEPPE, R.A., primary, FICARO, E.P., additional, RAFFEL, D.M., additional, MINOSHIMA, S., additional, and KILBOURN, M.R., additional
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- 1998
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15. Contributors
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Adam, M., primary, Alpert, Nathaniel M., additional, Anderson, J.R., additional, Andreasen, Nancy C., additional, Antonini, A., additional, Ardekani, Babak A., additional, Arndt, Stephan, additional, Ashburner, John, additional, Ashworth, Sharon, additional, Bailey, Dale L., additional, Baker, E., additional, Barnes, D.G., additional, Bench, C., additional, Bendriem, B., additional, Berdichevsky, D., additional, Biegon, A., additional, Blair, R.C., additional, Blomqvist, G., additional, Bloomfield, Peter M., additional, Ponto, Laura L. Boles, additional, Brakeman, Paul, additional, Braun, Michael, additional, Brooks, David J., additional, Brown, C.K., additional, Brown, W.D., additional, Bruckbauer, T., additional, Buckley, K.R., additional, Calonder, C., additional, Campbell, Gregory, additional, Carson, Richard E., additional, Chaly, Thomas, additional, Chan, G. L-Y., additional, Chen, Chin-Tu, additional, Cizadlo, Ted, additional, Cliffe, I.A., additional, Collins, D.L., additional, Cooper, Malcolm, additional, Crivello, F., additional, Crossnoe, M., additional, Cumming, Paul, additional, Cunningham, Vincent J., additional, Czernin, J., additional, Dahlbom, M., additional, Damasio, H., additional, DaSilva, J., additional, Witherspoon, Margaret E. Daube-, additional, DeJesus, O.T., additional, Delforge, J., additional, Dhawan, Vijay, additional, Dickhoven, S., additional, Diksic, Mirko, additional, Eberl, Stefan, additional, Egan, G.F., additional, Eidelberg, David, additional, Eriksson, Lars, additional, Evans, Alan C., additional, Fink, G.R., additional, Fischman, Alan J., additional, Fisher, Ronald E., additional, Fletcher, A., additional, Fontaine, A., additional, Ford, I., additional, Forse, G., additional, Frackowiak, R.S.J., additional, Frank, R.J., additional, Friston, K.J., additional, Frost, J. James, additional, Frouin, V., additional, Fujita, Hideaki, additional, Fujiwara, Takehiko, additional, Fukuda, H., additional, Fulham, Michael J., additional, Gee, Anthony D., additional, Gillings, N., additional, Gjedde, Albert, additional, Glaser, Robert, additional, Grabowski, T.J., additional, Graf, R., additional, Grafton, S.T., additional, Graham, Michael M., additional, Grasby, P., additional, Gunn, R.N., additional, Günther, I., additional, Hagisawa, S., additional, Haida, A., additional, Halber, M., additional, Hallett, Mark, additional, Hansen, Lars K., additional, Harris, Greg, additional, Haslam, Jane, additional, Hasselbalch, Steen, additional, Hatazawa, Jun, additional, Heiss, W.-D., additional, Herholz, K., additional, Herscovitch, Peter, additional, Herzog, H., additional, Hichwa, Richard D., additional, Hoh, C., additional, Holden, J.E., additional, Holm, Søren, additional, Holmes, A.P., additional, Holmes, C.J., additional, Hooper, Patrick K., additional, Houle, S., additional, Houser, D., additional, Huang, Sung-Cheng, additional, Hume, S.P., additional, Hurtig, Richard R., additional, Hussey, D., additional, Hutton, Brian F., additional, Iacoboni, M., additional, Ido, T., additional, Iida, Hidehiro, additional, Inoue, O., additional, Ishii, Kazunari, additional, Ishikawa, Tatsuya, additional, Itoh, H., additional, Itoh, Masatoshi, additional, Iwata, R., additional, Jadali, F., additional, Jagust, W., additional, Jivan, S., additional, Joliot, M., additional, Jones, A.K.P., additional, Jones, C., additional, Jones, Terry, additional, Kanno, Iwao, additional, Kao, Chien-Min, additional, Kapur, S., additional, Karbe, H., additional, Kessler, J., additional, Kilbourn, Michael R., additional, Kimura, Yuichi, additional, Kinahan, P.E., additional, Knorr, U., additional, Kobayashi, K., additional, Kops, E. Rota, additional, Kosugi, Yukio, additional, Kruger, Mark, additional, Kuwabara, Hiroto, additional, Lammertsma, Adriaan A., additional, Laurier, L., additional, Law, Ian, additional, Leenders, K.L., additional, Legg, B., additional, Levin, Z., additional, Lin, Kang-Ping, additional, Links, Jonathan M., additional, Lipinski, B., additional, Lopresti, B.J., additional, Löttgen, J., additional, Luthra, S.K., additional, Ma, Yilong, additional, Maguire, R.P., additional, Mahmood, K., additional, Malizia, Andrea L., additional, Mankoff, David A., additional, Marenco, Stefano, additional, Marrett, S., additional, Mathis, C.A., additional, Matsumura, Y., additional, Mazoyer, B., additional, Mazziotta, John C., additional, McCarron, J.A., additional, Meguro, K., additional, Meikle, Steven R., additional, Mejia, Marco A., additional, Mellet, E., additional, Meltzer, Carolyn Cidis, additional, Meyer, Ernst, additional, Millet, P., additional, Minoshima, S., additional, Mintun, M.A., additional, Missimer, J., additional, Miura, Shuichi, additional, Miyake, M., additional, Momose, Toshimitsu, additional, Mørch, Niels, additional, Morris, Evan D., additional, Morrish, Paul K., additional, Morrison, S., additional, Müller-Gärtner, H.W., additional, Murase, Kenya, additional, Muzi, Mark, additional, Myers, R., additional, Nakamura, Takashi, additional, Nariai, Tadashi, additional, Neelin, P., additional, Nickles, R.J., additional, Nishikawa, Junichi, additional, Nishizawa, Sadahiko, additional, Nutt, D.J., additional, O'Keefe, G.J., additional, O'Leary, Daniel S., additional, O'Sullivan, B.T., additional, O'Sullivan, Finbarr, additional, Oberschelp, W., additional, Ogawa, Toshihide, additional, Ono, S., additional, Osman, S., additional, Patlak, Clifford, additional, Paulson, Olaf B., additional, Pawlik, Gunter, additional, Petit, L., additional, Pietrzyk, U., additional, Pike, V.W., additional, Poline, J.-B., additional, Poole, K., additional, Price, J.C., additional, Psylla, M., additional, Pyzalski, Robert, additional, Rajeswaran, S., additional, Rakshi, James S., additional, Ranicar, Alex, additional, Rauch, Scott L., additional, Remy, P., additional, Reutens, David C., additional, Roberts, Andy, additional, Rosenqvist, G., additional, Rottenberg, D.A., additional, Rousset, Olivier G., additional, Ruth, T.J., additional, Sadato, Norihiro, additional, Samson, Y., additional, Sasaki, H., additional, Sase, Mikiya, additional, Sashin, D., additional, Schaper, K., additional, Schlaug, G., additional, Schnorr, L., additional, Seitz, R.J., additional, Senda, Michio, additional, Shelton, S.E., additional, Shields, Anthony F., additional, Shimosegawa, Eku, additional, Shiraishi, Masahiro, additional, Shrager, Richard, additional, Sidtis, J.J., additional, Simpson, N.R., additional, Smith, D., additional, Smith, Donald F., additional, Snow, B.J., additional, Snyder, Abraham Z., additional, Sossi, V., additional, Spelle, L., additional, Spence, Alexander, additional, Strother, S.C., additional, Stumpf, Martin J., additional, Suganami, Yusuke, additional, Svarer, Claus, additional, Swerdloff, S.J., additional, Syrota, A., additional, Taguchi, A., additional, Talarico, E., additional, Taylor, Chris, additional, Tellman, L., additional, Thiel, A., additional, Danguy, H. J. Tochon-, additional, Toga, Arthur W., additional, Toussaint, P.-J., additional, Townsend, D.W., additional, Toyama, Hinako, additional, Trébossen, R., additional, Tzourio, N., additional, Uchiyama, A., additional, Uemura, Kazuo, additional, Uno, H., additional, Vafaee, M., additional, Vingerhoets, F.J.G., additional, Vontobel, P., additional, Wagner, R., additional, Watabe, Hiroshi, additional, Watkins, G. Leonard, additional, Watson, J.D.G., additional, Wernick, Miles, additional, Wienhard, K., additional, Wilson, A.A., additional, Wilson, S., additional, Wollenweber, Scott D., additional, Wong, Dean F., additional, Woods, Roger P., additional, Worsley, K.J., additional, Yan, Yuchen, additional, Yanai, K., additional, Yang, J., additional, Yap, Jeffrey T., additional, Yu, D.C., additional, Zeien, Gene, additional, Zhou, Y., additional, and Zubieta, Jon Kar, additional
- Published
- 1996
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16. Correction for Global Metabolism in FDG PET Brain Images Using Linear Regression and Anatomic Standardization by Nonlinear Warping
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HALBER, M., primary, HERHOLZ, K., additional, MINOSHIMA, S., additional, and HEISS, W.-D., additional
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- 1996
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17. Normalized spleen/liver ratios on 111In-labelled platelet scintigraphy to predict the outcome of partial splenic embolization in patients with idiopathic thrombocytopenic purpura
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UCHIDA, Y., MINOSHIMA, S., MIYAZAKI, M., KUYAMA, J., KITAHARA, H., and ITO, H.
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- 2000
18. NICOTINE EFFECTS ON REGIONAL CEREBRAL METABOLIC RATE OF GLUCOSE IN TOBACCO SMOKERS.
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Domino, E. F., Zubieta, J.-K., Guthrie, S., Ohl, L., Ni, L., Koeppe, R., Cross, D., and Minoshima, S.
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- 2000
19. Genetics of Parkinson's Disease
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Mizuno, Y., Kitada, T., Asakawa, S., Hattori, N., Matsumine, H., Yamamura, Y., Minoshima, S., Yokochi, M., and Shimizu, N.
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- 1998
20. Stereotaxic Summation Analysis of Human Cerebral Benzodiazepine Binding Maps
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Frey, K. A., Minoshima, S., Koeppe, R. A., Kilbourn, M. R., Berger, K. L., and Kuhl, D. E.
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- 1996
21. A potential use of a 123I-labelled benzodiazepine receptor antagonist as a predictor of neuronal cell viability: Comparisons with 14C-labelled 2-deoxyglucose autoradiography and histopathological examination
- Author
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ODANO, I., MIYASHITA, K., MINOSHIMA, S., NAKAJIMA, T., FUJITA, M., TAKAHASHI, N., and IKUTA, F.
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- 1995
22. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts
- Author
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Yamasaki, C., Murakami, K., Fujii, Y., Sato, Y., Harada, E., Takeda, J., Taniya, T., Sakate, R., Kikugawa, S., Shimada, M., Tanino, M., Koyanagi, K.O., Barrero, R.A., Gough, C., Chun, H., Habara, T., Hanaoka, H., Hayakawa, Y., Hilton, P.B., Kaneko, Y., Kanno, M., Kawahara, Y., Kawamura, T., Matsuya, A., Nagata, N., Nishikata, K., Noda, A.O., Nurimoto, S., Saichi, N., Sakai, H., Sanbonmatsu, R., Shiba, R., Suzuki, M., Takabayashi, K., Takahashi, A., Tamura, T., Tanaka, M., Tanaka, S., Todokoro, F., Yamaguchi, K., Yamamoto, N., Okido, T., Mashima, J., Hashizume, A., Jin, L., Lee, K., Lin, Y., Nozaki, A., Sakai, K., Tada, M., Miyazaki, S., Makino, T., Ohyanagi, H., Osato, N., Tanaka, N., Suzuki, Y., Ikeo, K., Saitou, N., Sugawara, H., O'Donovan, C., Kulikova, T., Whitfield, E., Halligan, B., Shimoyama, M., Twigger, S., Yura, K., Kimura, K., Yasuda, T., Nishikawa, T., Akiyama, Y., Motono, C., Mukai, Y., Nagasaki, H., Suwa, M., Horton, P., Kikuno, R., Ohara, O., Lancet, D., Eveno, E., Graudens, E., Imbeaud, S., Debily, M., Hayashizaki, Y., Amid, C., Han, M., Osanger, A., Endo, T., Thomas, M.A., Hirakawa, M., Makalowski, W., Nakao, M., Kim, N., Yoo, H., de Souza, S.J., Bonaldo, M.D.F., Niimura, Y., Kuryshev, V., Schupp, I., Wiemann, S., Bellgard, M., Shionyu, M., Jia, L., Thierry-Mieg, D., Thierry-Mieg, J., Wagner, L., Zhang, Q., Go, M., Minoshima, S., Ohtsubo, M., Hanada, K., Tonellato, P., Isogai, T., Zhang, J., Lenhard, B., Kim, S., Chen, Z., Hinz, U., Estreicher, A., Nakai, K., Makalowska, I., Hide, W., Tiffin, N., Wilming, L., Chakraborty, R., Soares, M.B., Chiusano, M.L., Auffray, C., Yamaguchi-Kabata, Y., Itoh, T., Hishiki, T., Fukuchi, S., Nishikawa, K., Sugano, S., Nomura, N., Tateno, Y., Imanishi, T., Gojobori, T., Genexpress, Centre National de la Recherche Scientifique (CNRS), Yamasaki, C., Murakami, K., Fujii, Y., Sato, Y., Harada, E., Takeda, J., Taniya, T., Sakate, R., Kikugawa, S., Shimada, M., Tanino, M., Koyanagi, K. O., Barrero, R. A., Gough, C., Chun, H. W., Habara, T., Hanaoka, H., Hayakawa, Y., Hilton, P. B., Kaneko, Y., Kanno, M., Kawahara, Y., Kawamura, T., Matsuya, A., Nagata, N., Nishikata, K., Noda, A. O., Nurimoto, S., Saichi, N., Sakai, H., Sanbonmatsu, R., Shiba, R., Suzuki, M., Takabayashi, K., Takahashi, A., Tamura, T., Tanaka, M., Tanaka, S., Todokoro, F., Yamaguchi, K., Yamamoto, N., Okido, T., Mashima, J., Hashizume, A., Jin, L., Lee, K. B., Lin, Y. C., Nozaki, A., Sakai, K., Tada, M., Miyazaki, S., Makino, T., Ohyanagi, H., Osato, N., Tanaka, N., Suzuki, Y., Ikeo, K., Saitou, N., Sugawara, H., Odonovan, C., Kulikova, T., Whitfield, E., Halligan, B., Shimoyama, M., Twigger, S., Yura, K., Kimura, K., Yasuda, T., Nishikawa, T., Akiyama, Y., Motono, C., Mukai, Y., Nagasaki, H., Suwa, M., Horton, P., Kikuno, R., Ohara, O., Lancet, D., Eveno, E., Graudens, E., Imbeaud, S., Debily, M. A., Hayashizaki, Y., Amid, C., Han, M., Osanger, A., Endo, T., Thomas, M. A., Hirakawa, M., Makalowski, W., Nakao, M., Kim, N. S., Yoo, H. S., De Souza, S. J., Bonaldo Mde, F., Niimura, Y., Kuryshev, V., Schupp, I., Wiemann, S., Bellgard, M., Shionyu, M., Jia, L., Thierry Mieg, D., Thierry Mieg, J., Wagner, L., Zhang, Q., Go, M., Minoshima, S., Ohtsubo, M., Hanada, K., Tonellato, P., Isogai, T., Zhang, J., Lenhard, B., Kim, S., Chen, Z., Hinz, U., Estreicher, A., Nakai, K., Makalowska, I., Hide, W., Tiffin, N., Wilming, L., Chakraborty, R., Soares, M. B., Chiusano, MARIA LUISA, Auffray, C., Yamaguchi Kabata, Y., Itoh, T., Hishiki, T., Fukuchi, S., Nishikawa, K., Sugano, S., Nomura, N., Tateno, Y., Imanishi, T., and Gojobori, T.
- Subjects
DNA, Complementary ,[SDV]Life Sciences [q-bio] ,Pseudogene ,Locus (genetics) ,Biology ,computer.software_genre ,User-Computer Interface ,03 medical and health sciences ,Annotation ,0302 clinical medicine ,Databases, Genetic ,Genetics ,Animals ,Humans ,Gene family ,RNA, Messenger ,Gene ,database ,030304 developmental biology ,Internet ,0303 health sciences ,Human genome ,Database ,Alternative splicing ,Chromosome Mapping ,Proteins ,Articles ,Gene expression profiling ,Genes ,transcriptome ,computer ,030217 neurology & neurosurgery - Abstract
International audience; Here we report the new features and improvements in our latest release of the H-Invitational Database (H-InvDB; http://www.h-invitational.jp/), a comprehensive annotation resource for human genes and transcripts. H-InvDB, originally developed as an integrated database of the human transcriptome based on extensive annotation of large sets of full-length cDNA (FLcDNA) clones, now provides annotation for 120 558 human mRNAs extracted from the International Nucleotide Sequence Databases (INSD), in addition to 54 978 human FLcDNAs, in the latest release H-InvDB_4.6. We mapped those human transcripts onto the human genome sequences (NCBI build 36.1) and determined 34 699 human gene clusters, which could define 34 057 (98.1%) protein-coding and 642 (1.9%) non-protein-coding loci; 858 (2.5%) transcribed loci overlapped with predicted pseudogenes. For all these transcripts and genes, we provide comprehensive annotation including gene structures, gene functions, alternative splicing variants, functional non-protein-coding RNAs, functional domains, predicted sub cellular localizations, metabolic pathways, predictions of protein 3D structure, mapping of SNPs and microsatellite repeat motifs, co-localization with orphan diseases, gene expression profiles, orthologous genes, protein-protein interactions (PPI) and annotation for gene families. The current H-InvDB annotation resources consist of two main views: Transcript view and Locus view and eight sub-databases: the DiseaseInfo Viewer, H-ANGEL, the Clustering Viewer, G-integra, the TOPO Viewer, Evola, the PPI view and the Gene family/group.
- Published
- 2007
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23. Effects of nicotine on regional cerebral glucose metabolism in awake resting tobacco smokers
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Domino, E.F., Minoshima, S., Guthrie, S.K., Ohl, L., Ni, L., Koeppe, R.A., Cross, D.J., and Zubieta, J.-K.
- Published
- 2000
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24. Positional cloning of the autosomal recessive juvenile parkinsonism (AR-JP) gene and its diversity in deletion mutations
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Kitada, T, Asakawa, S, Matsumine, H, Hattori, N, Minoshima, S, Shimizu, N, and Mizuno, Y
- Published
- 1999
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25. Neuropsychological function and cerebral glucose utilization in isolated memory impairment and Alzheimers disease
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undefinedS.Berent, Giordani, B, Foster, N, Minoshima, S, Lajiness-Oneill, R, Koeppe, R, and Kuhl, D.e
- Published
- 1999
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26. The need for standardization and larger clinical studies in emerging indications to [18F]FDG PET brain PET: autoimmune encephalitis
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Morbelli S, Arbizu J, Booij J, Chen MK, Chetelat G, Cross DJ, Djekidel M, Drzezga A, Ekmekcioglu O, Garibotto V, Hesse S, Ishii K, Saraf LJ, Lammertsma A, Law I, Mathews D, Minoshima S, Moshi K, Pagani M, Pappata' S, Silverman DH, Signore A, Van De Giessen E, Villemagne V, and Barthel H
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PET ,Autoimmune Encephalitis - Published
- 2017
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27. Recommendations of the 2006 Human Variome Project meeting
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Cotton, RGH, Appelbe, W, Auerbach, AD, Becker, K, Bodmer, W, Boone, DJ, Boulyjenkov, V, Brahmachari, S, Brody, L, Brookes, A, Brown, AF, Byers, P, Maria Cantu, J, Cassiman, J-J, Claustres, M, Concannon, P, Den Dunnen, JT, Flicek, P, Gibbs, R, Hall, J, Hasler, J, Katz, M, Kwok, P-Y, Laradi, S, Lindblom, A, Maglott, D, Marsh, S, Masimirembwa, CM, Minoshima, S, De Ramirez, AMO, Pagon, R, Ramesar, R, Ravine, D, Richards, S, Rimoin, D, Ring, HZ, Scriver, CR, Sherry, S, Shimizu, N, Stein, L, Tadmouri, GO, Taylor, G, and Watson, M
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Standardization ,Informatics ,Sustainability ,Genetics ,MEDLINE ,Human Variome Project ,Relevance (information retrieval) ,Diagnostic laboratory ,Biology ,Data science ,Human genetics - Abstract
Lists of variations in genomic DNA and their effects have been kept for some time and have been used in diagnostics and research. Although these lists have been carefully gathered and curated, there has been little standardization and coordination, complicating their use. Given the myriad possible variations in the estimated 24,000 genes in the human genome, it would be useful to have standard criteria for databases of variation. Incomplete collection and ascertainment of variants demonstrates a need for a universally accessible system. These and other problems led to the World Heath Organization-cosponsored meeting on June 20-23, 2006 in Melbourne, Australia, which launched the Human Variome Project. This meeting addressed all areas of human genetics relevant to collection of information on variation and its effects. Members of each of eight sessions (the clinic and phenotype, the diagnostic laboratory, the research laboratory, curation and collection, informatics, relevance to the emerging world, integration and federation and funding and sustainability) developed a number of recommendations that were then organized into a total of 96 recommendations to act as a foundation for future work worldwide. Here we summarize the background of the project, the meeting and its recommendations. © 2007 Nature Publishing Group.
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- 2016
28. Initial sequencing and analysis of the human genome
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Lander, ES, Linton, LM, Birren, B, Nusbaum, C, Zody, MC, Baldwin, J, Devon, K, Dewar, K, Doyle, M, FitzHugh, W, Funke, R, Gage, D, Harris, K, Heaford, A, Howland, J, Kann, L, Lehoczky, J, LeVine, R, McEwan, P, McKernan, K, Meldrim, J, Mesirov, JP, Miranda, C, Morris, W, Naylor, J, Raymond, C, Rosetti, M, Santos, R, Sheridan, A, Sougnez, C, Stange-Thomann, N, Stojanovic, N, Subramanian, A, Wyman, D, Rogers, J, Sulston, J, Ainscough, R, Beck, S, Bentley, D, Burton, J, Clee, C, Carter, N, Coulson, A, Deadman, R, Deloukas, P, Dunham, A, Dunham, I, Durbin, R, French, L, Grafham, D, Gregory, S, Hubbard, T, Humphray, S, Hunt, A, Jones, M, Lloyd, C, McMurray, A, Matthews, L, Mercer, S, Milne, S, Mullikin, JC, Mungall, A, Plumb, R, Ross, M, Shownkeen, R, Sims, S, Waterston, RH, Wilson, RK, Hillier, LW, McPherson, JD, Marra, MA, Mardis, ER, Fulton, LA, Chinwalla, AT, Pepin, KH, Gish, WR, Chissoe, SL, Wendl, MC, Delehaunty, KD, Miner, TL, Delehaunty, A, Kramer, JB, Cook, LL, Fulton, RS, Johnson, DL, Minx, PJ, Clifton, SW, Hawkins, T, Branscomb, E, Predki, P, Richardson, P, Wenning, S, Slezak, T, Doggett, N, Cheng, JF, Olsen, A, Lucas, S, Elkin, C, Uberbacher, E, Frazier, M, Gibbs, RA, Muzny, DM, Scherer, SE, Bouck, JB, Sodergren, EJ, Worley, KC, Rives, CM, Gorrell, JH, Metzker, ML, Naylor, SL, Kucherlapati, RS, Nelson, DL, Weinstock, GM, Sakaki, Y, Fujiyama, A, Hattori, M, Yada, T, Toyoda, A, Itoh, T, Kawagoe, C, Watanabe, H, Totoki, Y, Taylor, T, Weissenbach, J, Heilig, R, Saurin, W, Artiguenave, F, Brottier, P, Bruls, T, Pelletier, E, Robert, C, Wincker, P, Smith, DR, Doucette-Stamm, L, Rubenfield, M, Weinstock, K, Lee, HM, Dubois, J, Rosenthal, A, Platzer, M, Nyakatura, G, Taudien, S, Rump, A, Yang, H, Yu, J, Wang, J, Huang, G, Gu, J, Hood, L, Rowen, L, Madan, A, Qin, S, Davis, RW, Federspiel, NA, Abola, AP, Proctor, MJ, Myers, RM, Schmutz, J, Dickson, M, Grimwood, J, Cox, DR, Olson, MV, Kaul, R, Shimizu, N, Kawasaki, K, Minoshima, S, Evans, GA, Athanasiou, M, Schultz, R, Roe, BA, Chen, F, Pan, H, Ramser, J, Lehrach, H, Reinhardt, R, McCombie, WR, de la Bastide, M, Dedhia, N, Blöcker, H, Hornischer, K, Nordsiek, G, Agarwala, R, Aravind, L, Bailey, JA, Bateman, A, Batzoglou, S, Birney, E, Bork, P, Brown, DG, Burge, CB, Cerutti, L, Chen, HC, Church, D, Clamp, M, Copley, RR, Doerks, T, Eddy, SR, Eichler, EE, Furey, TS, Galagan, J, Gilbert, JG, Harmon, C, Hayashizaki, Y, Haussler, D, Hermjakob, H, Hokamp, K, Jang, W, Johnson, LS, Jones, TA, Kasif, S, Kaspryzk, A, Kennedy, S, Kent, WJ, Kitts, P, Koonin, EV, Korf, I, Kulp, D, Lancet, D, Lowe, TM, McLysaght, A, Mikkelsen, T, Moran, JV, Mulder, N, Pollara, VJ, Ponting, CP, Schuler, G, Schultz, J, Slater, G, Smit, AF, Stupka, E, Szustakowski, J, Thierry-Mieg, D, Thierry-Mieg, J, Wagner, L, Wallis, J, Wheeler, R, Williams, A, Wolf, YI, Wolfe, KH, Yang, SP, Yeh, RF, Collins, F, Guyer, MS, Peterson, J, Felsenfeld, A, Wetterstrand, KA, Patrinos, A, Morgan, MJ, de Jong, P, Catanese, JJ, Osoegawa, K, Shizuya, H, Choi, S, Chen, YJ, and Szustakowki, J
- Subjects
Genetics ,Cancer genome sequencing ,Chimpanzee genome project ,Multidisciplinary ,Cancer Genome Project ,Gene density ,DNA sequencing theory ,Hybrid genome assembly ,Computational biology ,Biology ,Genome ,Personal genomics - Abstract
The human genome holds an extraordinary trove of information about human development, physiology, medicine and evolution. Here we report the results of an international collaboration to produce and make freely available a draft sequence of the human genome. We also present an initial analysis of the data, describing some of the insights that can be gleaned from the sequence.
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- 2016
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29. Isolation of the full-length cDNAs for 'predicted genes' and finding 'novel genes' on human chromosome 21
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Kudoh, J., Shibuya, K., Wang, J., Obayashi, I., Tatsuyama, M., Takahashi, M., Kawasaki, K., Shintani, A., Sasaki, T., Shimizu, A., Asakawa, S., Minoshima, S., and Shimizu, N.
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Human chromosome abnormalities -- Research ,Chromosome mapping -- Research ,Biological sciences - Published
- 2001
30. MutationView: A Graphical Database System for Mutations and Polymorphisms in Human Disease Genes
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Minoshima, S., Ohtsubo, M., Mitsuyama, S., Ohno, S., Kawamura, T., Ito, S., Ito, F., and Shimizu, N.
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Human genetics -- Research ,Human chromosome abnormalities -- Research ,Genetic disorders -- Research ,Databases -- Services ,Genetic research ,Gene mutations -- Research ,Graphics software -- Usage ,Biological sciences ,MutationView (Database) -- Services - Published
- 2001
31. The identification of disease genes by genomic sequencing analysis of 8q22-q24
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Shimizu, N., Shimizu, A., Sasaki, T., Shintani, A., Kawasaki, K., Kudoh, J., Minoshima, S., and Asakawa, S.
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Human genetics -- Research ,Genetic disorders -- Research ,Biological sciences - Published
- 2001
32. Identification of New Genes from the Pericentromeric 7.4-Mb Region of Human Chromosome 22
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Sasaki, T., Shiohama, A., Hosono, K., Matsushita, Y., Minoshima, S., Asakawa, A., Kudoh, J., Shintani, A., Shibuya, K., Aoki, N., Mitsuyama, S., Kawasaki, K., and Shimizu, N.
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Human genetics -- Research ,Chromosomes -- Physiological aspects ,Biological sciences - Published
- 2001
33. Functional analysis of single-minded 2 (SIM2) gene located on human chromosome 21q22.2
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Shimizu, Y., Yamaki, A., Kudoh, J., Minoshima, S., and Shimizu, N.
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Human genetics -- Research ,Chromosomes -- Genetic aspects ,Heredity, Human -- Genetic aspects ,Gene expression -- Research ,Down syndrome -- Genetic aspects ,Biological sciences - Published
- 2001
34. Identification of the proteins in neuroblastoma that were affected by overexpression of parkin
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Kawamura, T., Takayanagi, A., Asakawa, S., Minoshima, S., Mizuno, Y., and Shimizu, N.
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Human genetics -- Research ,Parkinsonism -- Genetic aspects ,Genetic disorders -- Research ,Biological sciences - Published
- 2001
35. Systematic gene identification based on the genomic sequence of human chromosome 21
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Kudoh, J., Shibuya, K., Scott, H.S., Nagamine, K., Kawasaki, K., Shintani, A., Sasaki, T., Wang, J., Tatsuyama, M., Guipponi, M., Michaud, J., Bartoloni, L., Wattenhofer, M., Rossier, C., Mitsuyama, S., Asakawa, S., Minoshima, S., Antonarakis, S.E, and Shimizu, N.
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Genetic research -- Analysis ,Human genetics -- Research ,Genomes -- Research ,Nucleotide sequence -- Research ,Biological sciences - Published
- 2000
36. Evolution of the human immunoglobulin [V.sub.[Kappa]] gene locus
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Kawasaki, K., Minoshima, S., Shibuya, K., Shintani, A., Asakawa, S., Klobeck, H.G., Combriato, G., Zachau, H.G., and Shimizu, N.
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Genetic research -- Analysis ,Human genetics -- Research ,Genetic disorders -- Research ,Biological sciences - Published
- 2000
37. Detailed Analysis of the Pericentromeric 7.1-Mb Region of Human Chromosome 22 Based on the Genomic Sequence
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Minoshima, S., Sasaki, T., Kawasaki, K., Asakawa, S., Kudoh, J., Shintani, A., Shibuya, K., Matshushita, Y., Aoki, N., Mitsuyama, S., Hosono, K., and Shimizu, N.
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Genetic research -- Analysis ,Human genetics -- Research ,Genetic disorders -- Research ,Biological sciences - Published
- 2000
38. Isolation and characterization of a novel gene encoding a protein with UBA and SH3 domains on Human Chromosome 21q22.3; its exclusion for the autosomal recessive deafness locus, DFNB10
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Wattenhofer, M., Kudoh, J., Shibuya, K., Minoshima, S., Shimizu, N., Berry, A., Talior, I., Bonne-Tamir, B., Lyle, R., Michaud, J., Rossier, C., Antonarakis, S.E., and Scott, H.S.
- Subjects
Genetic research -- Analysis ,Human genetics -- Research ,Down syndrome -- Genetic aspects ,Bipolar disorder -- Genetic aspects ,Biological sciences - Published
- 2000
39. Functional Genomics of Single-minded 2 (SIM2) Gene Located on Human Chromosome 21q22.2
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Shimizu, Y., Yamaki, A., Kudoh, J., Minoshima, S., and Shimizu, N.
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Genetic research -- Analysis ,Human genetics -- Research ,Genetic disorders -- Research ,Biological sciences - Published
- 2000
40. A novel mutation mechanism, insertion of [Beta]-satellite repeats, in a transmembrane protease gene causes the autosomal recessive deafness DFNB10
- Author
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Scott, H.S., Wattenhofer, M., Shibuya, K., Berry, A., Kudoh, J., Guipponi, M., Kawasaki, K., Asakawa, S., Minoshima, S., Papasavvas, M.P., Rossier, C., Chrast, R., Korostishevsky, M., Shimizu, N., Bonne-Tamir, B., and Antonarakis, S.E.
- Subjects
Proteases -- Genetic aspects ,Deafness -- Genetic aspects ,Gene mutations -- Research ,Biological sciences - Published
- 2000
41. Establishing Amyloid PET Imaging Biomarkers: Ongoing Efforts
- Author
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Minoshima, S., primary
- Published
- 2015
- Full Text
- View/download PDF
42. Multicenter standardized FDG-PET diagnosis of mild cognitive impairment, Alzheimer's disease and other dementias
- Author
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Mosconi, L., Tsui, W. H., Herholz, K., Pupi, A., Drzezga, A., Lucignani, G., Reimann, E. M., Holthoff, V., Kalbe, E., Sorbi, S., Diehl-Schmid, J., Perneczky, R., Clerici, F., Caselli, R., Beuthien-Baumann, B., Kurz, A., Minoshima, S., and Leon, M. J.
- Subjects
mental disorders ,behavioral disciplines and activities ,nervous system diseases - Abstract
This multicenter study examined F-18-FDG PET measures in the differential diagnosis of Alzheimer's disease (AD), frontotemporal dementia (FTD), and dementia with Lewy bodies (DLB) from normal aging and from each other and the relation of disease-specific patterns to mild cognitive impairment (MCI). Methods: We examined the F-18-FDG PET scans of 548 subjects, including 110 healthy elderly individuals ("normals" or NLs), 114 MCI, 199 AD, 98 FTD, and 27 DLB patients, collected at 7 participating centers. Individual PET scans were Z scored using automated voxel-based comparison with generation of disease-specific patterns of cortical and hippocampal F-18-FDG uptake that were then applied to characterize MCI. Results: Standardized disease-specific PET patterns were developed that correctly classified 95% AD, 92% DLB, 94% FTD, and 94% NIL. MCI patients showed primarily posterior cingulate cortex and hippocampal hypometabolism (81%), whereas neocortical abnormalities varied accordi! ng to neuropsychological profiles. An AD PET pattern was observed in 79% MCI with deficits in multiple cognitive domains and 31% amnesic MCI. F-18-FDG PET heterogeneity in MCI with non-memory deficits ranged from absent hypometabolism to FTD and DLB PET patterns. Conclusion: Standardized automated analysis of F-18-FDG PET scans may provide an objective and sensitive support to the clinical diagnosis in early dementia. Key Words: F-18-FDG PET; Alzheimer's disease; frontotemporal dementia; Lewy body dementia; mild cognitive impairment; normal aging; hippocampus.
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- 2008
43. Cerebral glucose metabolism in patients with AD and different APOE genotypes
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Drzezga, A., Riemenschneider, M., Strassner, B., Grimmer, T., Peller, M., Knoll, A., Wagenpfeil, S., Minoshima, S., Schwaiger, M., and Kurz, A.
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ddc - Published
- 2004
44. 18F-FDG kinetics in locally advanced breast cancer: correlation with tumor blood flow and changes in response to neoadjuvant chemotherapy
- Author
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Tseng, J, Dunnwald, L, Schubert, E, Link, J, Minoshima, S, Muzi, M, and Mankoff, D
- Abstract
UNLABELLED: The aim of this study was to characterize the biologic response of locally advanced breast cancer (LABC) to chemotherapy using (15)O-water-derived blood flow measurements and (18)F-FDG-derived glucose metabolism rate parameters. METHODS: Thirty-five LABC patients underwent PET with (15)O-water and (18)F-FDG before neoadjuvant chemotherapy and 2 mo after the initiation of treatment. Kinetic analysis for (15)O-water was performed using a single tissue compartment model to calculate blood flow; a 2-tissue compartment model was used to estimate (18)F-FDG rate parameters K(1), k(2), k(3), and the flux constant, K(i). Correlations and ratios between blood flow and (18)F-FDG rate parameters were calculated and compared with pathologic tumor response. RESULTS: Although blood flow and (18)F-FDG transport (K(1)) were correlated before chemotherapy, there was relatively poor correlation between blood flow and the phosphorylation constant (k(3)) or the overall (18)F-FDG flux (K(i)). Blood flow and (18)F-FDG flux were more closely matched after chemotherapy, with changes in k(3) accounting for the increased correlation. These findings were consistent with a decline in both the K(i)/flow and k(3)/flow ratios with therapy. The ratio of (18)F-FDG flux to transport (K(i)/K(1)) after 2 mo of chemotherapy was predictive of ultimate response. CONCLUSION: The pattern of tumor glucose metabolism in LABC, as reflected by analysis of (18)F-FDG rate parameters, changes after therapy, even in patients with modest clinical responses. This may indicate a change in tumor "metabolic phenotype" in response to treatment. A low ratio of glucose metabolism (reflected by K(i)) to glucose delivery (reflected by K(1) and blood flow) after therapy is associated with a favorable response. Further work is needed to understand the tumor biology underlying these findings.
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- 2004
45. Integrative Annotation of 21,037 Human Genes\ud Validated by Full-Length cDNA Clones
- Author
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Imanishi, T., Itoh, T., Suzuki, Y., O'Donovan, C., Fukuchi, S., Koyanagi, K.O., Barrero, R.A., Tamura, T., Yamaguchi-Kabata, Y., Tanino, M., Yura, K., Miyazaki, S., Ikeo, K., Homma, K., Kasprzyk, A., Nishikawa, T., Hirakawa, M., Thierry-Mieg, J., Thierry-Mieg, D., Ashurst, J., Jia, L., Nakao, M., Thomas, M.A., Mulder, N., Karavidopoulou, Y., Jin, L., Kim, S., Yasuda, T., Lenhard, B., Eveno, E., Yamasaki, C., Takeda, J., Gough, C., Hilton, P., Fujii, Y., Sakai, H., Tanaka, S., Amid, C., Bellgard, M., De Fatima Bonaldo, M., Bono, H., Bromberg, S.K., Brookes, A.J., Bruford, E., Carninci, P., Chelala, C., Couillault, C., de Souza, S.J., Debily, M., Devignes, M., Dubchak, I., Endo, T., Estreicher, A., Eyras, E., Fukami-Kobayashi, K., Gopinath, G.R., Graudens, E., Hahn, Y., Han, M., Han, Z., Hanada, K., Hanaoka, H., Harada, E., Hinz, U., Hishiki, T., Hopkinson, I., Imbeaud, S., Inoko, H., Kanapin, A., Kaneko, Y., Kasukawa, T., Kersey, P., Kikuno, R., Kimura, K., Korn, B., Kuryshev, V., Makalowska, I., Makino, T., Mano, S., Mariage-Samson, R., Mashima, J., Matsuda, H., Mewes, H., Minoshima, S., Nagai, K., Nagasaki, H., Nagata, N., Nigam, R., Ogasawara, O., Ohara, O., Ohtsubo, M., Okido, T., Oota, S., Ota, M., Ota, T., Otsuki, T., Piatier-Tonneau, D., Poustka, A., Ren, S., Saitou, N., Sakai, K., Sakamoto, S., Sakate, R., Schupp, I., Servant, F., Sherry, S., Shiba, R., Shimizu, N., Shimoyama, M., Simpson, A.J., Soares, B., Steward, C., Suwa, M., Suzuki, M., Takahashi, A., Tamiya, G., Tanaka, H., Taylor, T., Terwilliger, J.D., Unneberg, P., Veeramachaneni, V., Watanabe, S., Wilming, L., Yasuda, N., Yoo, H-S., Stodolsky, M., Makalowski, W., Go, M., Nakai, K., Takagi, T., Kanehisa, M., Sakaki, Y., Quackenbush, J., Okazaki, Y., Hayashizaki, Y., Hide, W., Chakraborty, R., Nishikawa, K., Sugawara, H., Tateno, Y., Chen, Z., Oishi, M., Tonellato, P., Apweiler, R., Okubo, K., Wagner, L., Wiemann, S., Strausberg, R.L., Isogai, T., Auffray, C., Nomura, N., Gojobori, T., and Sugano, S.
- Abstract
The human genome sequence defines our inherent biological potential; the realization of the biology encoded therein\ud requires knowledge of the function of each gene. Currently, our knowledge in this area is still limited. Several lines of\ud investigation have been used to elucidate the structure and function of the genes in the human genome. Even so, gene\ud prediction remains a difficult task, as the varieties of transcripts of a gene may vary to a great extent. We thus\ud performed an exhaustive integrative characterization of 41,118 full-length cDNAs that capture the gene transcripts as\ud complete functional cassettes, providing an unequivocal report of structural and functional diversity at the gene level.\ud Our international collaboration has validated 21,037 human gene candidates by analysis of high-quality full-length\ud cDNA clones through curation using unified criteria. This led to the identification of 5,155 new gene candidates. It also\ud manifested the most reliable way to control the quality of the cDNA clones. We have developed a human gene\ud database, called the H-Invitational Database (H-InvDB; http://www.h-invitational.jp/). It provides the following:\ud integrative annotation of human genes, description of gene structures, details of novel alternative splicing isoforms,\ud non-protein-coding RNAs, functional domains, subcellular localizations, metabolic pathways, predictions of protein\ud three-dimensional structure, mapping of known single nucleotide polymorphisms (SNPs), identification of polymorphic\ud microsatellite repeats within human genes, and comparative results with mouse full-length cDNAs. The H-InvDB\ud analysis has shown that up to 4% of the human genome sequence (National Center for Biotechnology Information\ud build 34 assembly) may contain misassembled or missing regions. We found that 6.5% of the human gene candidates\ud (1,377 loci) did not have a good protein-coding open reading frame, of which 296 loci are strong candidates for nonprotein-coding\ud RNA genes. In addition, among 72,027 uniquely mapped SNPs and insertions/deletions localized within\ud human genes, 13,215 nonsynonymous SNPs, 315 nonsense SNPs, and 452 indels occurred in coding regions. Together\ud with 25 polymorphic microsatellite repeats present in coding regions, they may alter protein structure, causing\ud phenotypic effects or resulting in disease. The H-InvDB platform represents a substantial contribution to resources\ud needed for the exploration of human biology and pathology
- Published
- 2004
46. SNM practice guideline for dopamine transporter imaging with 123I-ioflupane SPECT 1.0
- Author
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Djang, D.S., Janssen, M.J.R., Bohnen, N., Booij, J., Henderson, T.A., Herholz, K., Minoshima, S., Rowe, C.C., Sabri, O., Seibyl, J., Van Berckel, B.N., Wanner, M., Djang, D.S., Janssen, M.J.R., Bohnen, N., Booij, J., Henderson, T.A., Herholz, K., Minoshima, S., Rowe, C.C., Sabri, O., Seibyl, J., Van Berckel, B.N., and Wanner, M.
- Abstract
Item does not contain fulltext
- Published
- 2012
47. A prioritization analysis of disease association by data-mining of functional annotation of human genes
- Author
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Taniya, T., Tanaka, S., Yamaguchi-Kabata, Y., Hanaoka, H., Yamasaki, C., Maekawa, H., Barrero, R.A., Lenhard, B., Datta, M.W., Shimoyama, M., Bumgarner, R., Chakraborty, R., Hopkinson, I., Jia, L., Hide, W., Auffray, C., Minoshima, S., Imanishi, T., Gojobori, T., Taniya, T., Tanaka, S., Yamaguchi-Kabata, Y., Hanaoka, H., Yamasaki, C., Maekawa, H., Barrero, R.A., Lenhard, B., Datta, M.W., Shimoyama, M., Bumgarner, R., Chakraborty, R., Hopkinson, I., Jia, L., Hide, W., Auffray, C., Minoshima, S., Imanishi, T., and Gojobori, T.
- Abstract
Complex diseases result from contributions of multiple genes that act in concert through pathways. Here we present a method to prioritize novel candidates of disease-susceptibility genes depending on the biological similarities to the known disease-related genes. The extent of disease-susceptibility of a gene is prioritized by analyzing seven features of human genes captured in H-InvDB. Taking rheumatoid arthritis (RA) and prostate cancer (PC) as two examples, we evaluated the efficiency of our method. Highly scored genes obtained included TNFSF12 and OSM as candidate disease genes for RA and PC, respectively. Subsequent characterization of these genes based upon an extensive literature survey reinforced the validity of these highly scored genes as possible disease-susceptibility genes. Our approach, Prioritization ANalysis of Disease Association (PANDA), is an efficient and cost-effective method to narrow down a large set of genes into smaller subsets that are most likely to be involved in the disease pathogenesis.
- Published
- 2012
48. Effets de l’âge et du genre sur la perfusion cérébrale régionale étudiée par deux méthodes d’analyse statistique voxel-par-voxel
- Author
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UCL - (MGD) Service de médecine nucléaire, UCL - (MGD) Unité de support scientifique, Pirson, Anne-Sophie, Van Laere, Koen, George, J., Jamart, Jacques, Krug, Bruno, D'Asseler, Y., Minoshima, S., Vander Borght, Thierry, UCL - (MGD) Service de médecine nucléaire, UCL - (MGD) Unité de support scientifique, Pirson, Anne-Sophie, Van Laere, Koen, George, J., Jamart, Jacques, Krug, Bruno, D'Asseler, Y., Minoshima, S., and Vander Borght, Thierry
- Abstract
Fully automated analysis programs have been applied more and more to aid for the reading of regional cerebral blood flow SPECT study. They are increasingly based on the comparison of the patient study with a normal database. In this study, we evaluate the ability of Three-Dimensional Stereotactic Surface Projection (3D-SSP) to isolate effects of age and gender in a previously Studied normal population. The results were also compared with those obtained using Statistical Parametric Mapping (SPM99). Methods. - Eighty-nine Te-99m-ECD-SPFCT studies performed in carefully screened healthy volunteers (46 females, 43 males; age 20-81 years) were analysed using 3D-SSP. A multivariate analysis based on the general linear model was performed with regions as intrasubject factor, gender as intersubject factor and age as covariate. Results. - Both age and gender had a significant interaction effect with regional tracer uptake. An age-related decline (p < 0.001) was found in the anterior cingulate gyrus, left frontal association cortex and left insula. Bilateral occipital association and left primary visual cortical uptake showed a significant relative increase with age (p < 0.001). Concerning the gender effect, women showed higher uptake (p < 0.01) in the parietal and right sensorimotor cortices. An age by gender interaction (p < 0.01) was only found in the left medial frontal cortex. The results were consistent with those obtained with SPM99. Conclusion. - 3D-SSP analysis of normal rCBF variability is consistent with the literature and other automated voxel-based techniques, which highlight the effects of both age and gender. (C) 2009 Elsevier Masson SAS. All rights reserved.
- Published
- 2009
49. Initial sequencing and analysis of the human genome
- Author
-
Univ Michigan, Sch Med, Dept Human Genet, Ann Arbor, MI 48109 USA, Univ Michigan, Sch Med, Dept Internal Med, Ann Arbor, MI 48109 USA, Whitehead Inst Biomed Res, Ctr Genome Res, Cambridge, MA 02142 USA, Sanger Ctr, Hinxton CB10 1RQ, Cambs, England, Washington Univ, Genome Sequencing Ctr, St Louis, MO 63108 USA, US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA, Baylor Coll Med, Human Genome Sequencing Ctr, Dept Mol & Human Genet, Houston, TX 77030 USA, Univ Texas, Hlth Sci Ctr, Dept Cellular & Struct Biol, San Antonio, TX 78229 USA, Yeshiva Univ Albert Einstein Coll Med, Dept Mol Genet, Bronx, NY 10461 USA, Univ Texas, Sch Med, Dept Microbiol & Mol Genet, Houston, TX 77225 USA, RIKEN, Genom Sci Ctr, Tsurumi Ku, Yokohama, Kanagawa 2300045, Japan, Genoscope, F-91057 Evry, France, CNRS, UMR 8030, F-91057 Evry, France, Genome Therapeut Corp, GTC Sequencing Ctr, Waltham, MA 02453 USA, Inst Mol Biotechnol, Dept Genome Anal, D-07745 Jena, Germany, Chinese Acad Sci, Inst Genet, Ctr Human Genome, Beijing Genom Inst, Beijing 100101, Peoples R China, So China Natl Human Genome Res Ctr, Shanghai 201203, Peoples R China, No China Natl Human Genome Res Ctr, Beijing 100176, Peoples R China, Inst Syst Biol, Multimegabase Sequencing Ctr, Seattle, WA 98105 USA, Stanford Genome Technol Ctr, Palo Alto, CA 94304 USA, Stanford Univ, Dept Genet, Sch Med, Stanford, CA 94305 USA, Stanford Univ, Stanford Human Genome Ctrr, Sch Med, Stanford, CA 94305 USA, Univ Washington, Genome Ctr, Seattle, WA 98195 USA, Keio Univ, Sch Med, Dept Biol Mol, Shinjuku Ku, Tokyo 1608582, Japan, Univ Texas, SW Med Ctr, Dallas, TX 75235 USA, Univ Oklahoma, Adv Ctr Genome Technol, Dept Chem & Biochem, Norman, OK 73019 USA, Max Planck Inst Mol Genet, D-14195 Berlin, Germany, Cold Spring Harbor Lab, Lita Annenberg Hazen Genome Ctr, Cold Spring Harbor, NY 11724 USA, GBF, German Res Ctr Biotechnol, D-38124 Braunschweig, Germany, NIH, Natl Ctr Biotechnol Informat, Natl Lib Med, Bethesda, MD 20894 USA, Case Western Reserve Univ, Sch Med, Dept Genet, Cleveland, OH 44106 USA, Univ Hosp Cleveland, Cleveland, OH 44106 USA, EMBL, European Bioinformat Inst, Cambridge CB10 1SD, England, Max Delbruck Ctr Mol Med, D-13125 Berlin, Germany, MIT, Dept Biol, Cambridge, MA 02139 USA, Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA, Univ Calif Santa Cruz, Dept Comp Sci, Santa Cruz, CA 95064 USA, Affymetrix Inc, Berkeley, CA 94710 USA, RIKEN, Yokoham Inst, Genom Sci Ctr, Genom Explorat Res Grp, Tsurumi Ku, Kanagawa 2300045, Japan, Univ Calif Santa Cruz, Dept Comp Sci, Howard Hughes Med Inst, Santa Cruz, CA 95064 USA, Univ Dublin Trinity Coll, Dept Genet, Smurfit Inst, Dublin 2, Ireland, Compaq Comp Corp, Cambridge Res Lab, Cambridge, MA 02142 USA, MIT, Genome Ctr, Cambridge, MA 02142 USA, Univ Calif Santa Cruz, Dept Math, Santa Cruz, CA 95064 USA, Univ Calif Santa Cruz, Dept Biol, Santa Cruz, CA 95064 USA, Weizmann Inst Sci, Crown Human Genet Ctr, IL-71600 Rehovot, Israel, Weizmann Inst Sci, Dept Mol Genet, IL-71600 Rehovot, Israel, Univ Oxford, Dept Human Anat & Genet, MRC, Funct Genet Unit, Oxford OX1 3QX, England, Inst Syst Biol, Seattle, WA 98105 USA, NHGRI, NIH, Bethesda, MD 20892 USA, US Dept Energy, Off Sci, Germantown, MD 20874 USA, Wellcome Trust, London NW1 2BE, England, Lander, E.S., Linton, L.M., Birren, B., Nusbaum, C., Zody, M.C., Baldwin, J., Devon, K., Dewar, K., Doyle, M., FitzHugh, W., Funke, R., Gage, D., Harris, K., Heaford, A., Howland, J., Kann, L., Lehoczky, J., LeVine, R., McEwan, P., McKernan, K., Meldrim, J., Mesirov, J.P., Miranda, C., Morris, W., Naylor, J., Raymond, C., Rosetti, M., Santos, R., Sheridan, A., Sougnez, C., Stange-Thomann, N., Stojanovic, N., Subramanian, A., Wyman, D., Rogers, J., Sulston, J., Ainscough, R., Beck, S., Bentley, D., Burton, J., Clee, C., Carter, N., Coulson, A., Deadman, R., Deloukas, P., Dunham, A., Dunham, I., Durbin, R., French, L., Grafham, D., Gregory, S., Hubbard, T., Humphray, S., Hunt, A., Jones, M., Lloyd, C., McMurray, A., Matthews, L., Mercer, S., Milne, S., Mullikin, J.C., Mungall, A., Plumb, R., Ross, M., Shownkeen, R., Sims, S., Waterston, R.H., Wilson, R.K., Hillier, L.W., McPherson, John D., Marra, M.A., Mardis, E.R., Fulton, L.A., Chinwalla, A.T., Pepin, K.H., Gish, W.R., Chissoe, S.L., Wendl, M.C., Delehaunty, K.D., Miner, T.L., Delehaunty, A., Kramer, J.B., Cook, L.L., Fulton, R.S., Johnson, D.L., Minx, P.J., Clifton, S.W., Hawkins, T., Branscomb, E., Predki, P., Richardson, P., Wenning, S., Slezak, T., Doggett, N., Cheng, J.F., Olsen, A., Lucas, S., Elkin, C., Uberbacher, E.C., Frazier, M., Gibbs, R.A., Muzny, D.M., Scherer, S.E., Bouck, J.B., Sodergren, E.J., Worley, K.C., Rives, C.M., Gorrell, J.H., Metzker, M.L., Naylor, S.L., Kucherlapati, R.S., Nelson, D.L., Weinstock, G.M., Sakaki, Y., Fujiyama, A., Hattori, M., Yada, T., Toyoda, A., Itoh, T., Kawagoe, C., Watanabe, H., Totoki, Y., Taylor, T., Weissenbach, J., Heilig, R., Saurin, W., Artiguenave, F., Brottier, P., Bruls, T., Pelletier, E., Robert, C., Wincker, P., Rosenthal, A., Platzer, M., Nyakatura, G., Taudien, S., Rump, A., Yang, H.M., Yu, J., Wang, J., Huang, G.Y., Gu, J., Hood, L., Rowen, L., Madan, A., Qin, S.Z., Davis, R.W., Federspiel, N.A., Abola, A.P., Proctor, M.J., Myers, R.M., Schmutz, J., Dickson, M., Grimwood, J., Cox, D.R., Olson, M.V., Kaul, R., Shimizu, N., Kawasaki, K., Minoshima, S., Evans, G.A., Athanasiou, M., Schultz, R., Roe, B.A., Chen, F., Pan, H.Q., Ramser, J., Lehrach, H., Reinhardt, R., McCombie, W.R., De la Bastide, M., Dedhia, N., Blocker, H., Hornischer, K., Nordsiek, G., Agarwala, R., Aravind, L., Bailey, J.A., Bateman, A., Batzoglou, S., Birney, E., Bork, P., Brown, D.G., Burge, C.B., Cerutti, L., Chen, H.C., Church, D., Clamp, M., Copley, R.R., Doerks, T., Eddy, S.R., Eichler, E.E., Furey, T.S., Galagan, J., Gilbert, Jgr, Harmon, C., Hayashizaki, Y., Haussler, D., Hermjakob, H., Hokamp, K., Jang, W.H., Johnson, L.S., Jones, T.A., Kasif, S., Kaspryzk, A., Kennedy, S., Kent, W.J., Kitts, P., Koonin, E.V., Korf, I., Kulp, D., Lancet, D., Lowe, T.M., McLysaght, A., Mikkelsen, T., Moran, J.V., Mulder, N., Pollara, V.J., Ponting, C.P., Schuler, G., Schultz, J.R., Slater, G., Smit, A.F.A., Stupka, E., Szustakowki, J., Thierry-Mieg, D., Thierry-Mieg, J., Wagner, L., Wallis, J., Wheeler, R., Williams, A., Wolf, Y.I., Wolfe, K.H., Yang, S.P., Yeh, R.F., Collins, F., Guyer, M.S., Peterson, J., Felsenfeld, A., Wetterstrand, K.A., Patrinos, A., Morgan, M.J., Univ Michigan, Sch Med, Dept Human Genet, Ann Arbor, MI 48109 USA, Univ Michigan, Sch Med, Dept Internal Med, Ann Arbor, MI 48109 USA, Whitehead Inst Biomed Res, Ctr Genome Res, Cambridge, MA 02142 USA, Sanger Ctr, Hinxton CB10 1RQ, Cambs, England, Washington Univ, Genome Sequencing Ctr, St Louis, MO 63108 USA, US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA, Baylor Coll Med, Human Genome Sequencing Ctr, Dept Mol & Human Genet, Houston, TX 77030 USA, Univ Texas, Hlth Sci Ctr, Dept Cellular & Struct Biol, San Antonio, TX 78229 USA, Yeshiva Univ Albert Einstein Coll Med, Dept Mol Genet, Bronx, NY 10461 USA, Univ Texas, Sch Med, Dept Microbiol & Mol Genet, Houston, TX 77225 USA, RIKEN, Genom Sci Ctr, Tsurumi Ku, Yokohama, Kanagawa 2300045, Japan, Genoscope, F-91057 Evry, France, CNRS, UMR 8030, F-91057 Evry, France, Genome Therapeut Corp, GTC Sequencing Ctr, Waltham, MA 02453 USA, Inst Mol Biotechnol, Dept Genome Anal, D-07745 Jena, Germany, Chinese Acad Sci, Inst Genet, Ctr Human Genome, Beijing Genom Inst, Beijing 100101, Peoples R China, So China Natl Human Genome Res Ctr, Shanghai 201203, Peoples R China, No China Natl Human Genome Res Ctr, Beijing 100176, Peoples R China, Inst Syst Biol, Multimegabase Sequencing Ctr, Seattle, WA 98105 USA, Stanford Genome Technol Ctr, Palo Alto, CA 94304 USA, Stanford Univ, Dept Genet, Sch Med, Stanford, CA 94305 USA, Stanford Univ, Stanford Human Genome Ctrr, Sch Med, Stanford, CA 94305 USA, Univ Washington, Genome Ctr, Seattle, WA 98195 USA, Keio Univ, Sch Med, Dept Biol Mol, Shinjuku Ku, Tokyo 1608582, Japan, Univ Texas, SW Med Ctr, Dallas, TX 75235 USA, Univ Oklahoma, Adv Ctr Genome Technol, Dept Chem & Biochem, Norman, OK 73019 USA, Max Planck Inst Mol Genet, D-14195 Berlin, Germany, Cold Spring Harbor Lab, Lita Annenberg Hazen Genome Ctr, Cold Spring Harbor, NY 11724 USA, GBF, German Res Ctr Biotechnol, D-38124 Braunschweig, Germany, NIH, Natl Ctr Biotechnol Informat, Natl Lib Med, Bethesda, MD 20894 USA, Case Western Reserve Univ, Sch Med, Dept Genet, Cleveland, OH 44106 USA, Univ Hosp Cleveland, Cleveland, OH 44106 USA, EMBL, European Bioinformat Inst, Cambridge CB10 1SD, England, Max Delbruck Ctr Mol Med, D-13125 Berlin, Germany, MIT, Dept Biol, Cambridge, MA 02139 USA, Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA, Univ Calif Santa Cruz, Dept Comp Sci, Santa Cruz, CA 95064 USA, Affymetrix Inc, Berkeley, CA 94710 USA, RIKEN, Yokoham Inst, Genom Sci Ctr, Genom Explorat Res Grp, Tsurumi Ku, Kanagawa 2300045, Japan, Univ Calif Santa Cruz, Dept Comp Sci, Howard Hughes Med Inst, Santa Cruz, CA 95064 USA, Univ Dublin Trinity Coll, Dept Genet, Smurfit Inst, Dublin 2, Ireland, Compaq Comp Corp, Cambridge Res Lab, Cambridge, MA 02142 USA, MIT, Genome Ctr, Cambridge, MA 02142 USA, Univ Calif Santa Cruz, Dept Math, Santa Cruz, CA 95064 USA, Univ Calif Santa Cruz, Dept Biol, Santa Cruz, CA 95064 USA, Weizmann Inst Sci, Crown Human Genet Ctr, IL-71600 Rehovot, Israel, Weizmann Inst Sci, Dept Mol Genet, IL-71600 Rehovot, Israel, Univ Oxford, Dept Human Anat & Genet, MRC, Funct Genet Unit, Oxford OX1 3QX, England, Inst Syst Biol, Seattle, WA 98105 USA, NHGRI, NIH, Bethesda, MD 20892 USA, US Dept Energy, Off Sci, Germantown, MD 20874 USA, Wellcome Trust, London NW1 2BE, England, Lander, E.S., Linton, L.M., Birren, B., Nusbaum, C., Zody, M.C., Baldwin, J., Devon, K., Dewar, K., Doyle, M., FitzHugh, W., Funke, R., Gage, D., Harris, K., Heaford, A., Howland, J., Kann, L., Lehoczky, J., LeVine, R., McEwan, P., McKernan, K., Meldrim, J., Mesirov, J.P., Miranda, C., Morris, W., Naylor, J., Raymond, C., Rosetti, M., Santos, R., Sheridan, A., Sougnez, C., Stange-Thomann, N., Stojanovic, N., Subramanian, A., Wyman, D., Rogers, J., Sulston, J., Ainscough, R., Beck, S., Bentley, D., Burton, J., Clee, C., Carter, N., Coulson, A., Deadman, R., Deloukas, P., Dunham, A., Dunham, I., Durbin, R., French, L., Grafham, D., Gregory, S., Hubbard, T., Humphray, S., Hunt, A., Jones, M., Lloyd, C., McMurray, A., Matthews, L., Mercer, S., Milne, S., Mullikin, J.C., Mungall, A., Plumb, R., Ross, M., Shownkeen, R., Sims, S., Waterston, R.H., Wilson, R.K., Hillier, L.W., McPherson, John D., Marra, M.A., Mardis, E.R., Fulton, L.A., Chinwalla, A.T., Pepin, K.H., Gish, W.R., Chissoe, S.L., Wendl, M.C., Delehaunty, K.D., Miner, T.L., Delehaunty, A., Kramer, J.B., Cook, L.L., Fulton, R.S., Johnson, D.L., Minx, P.J., Clifton, S.W., Hawkins, T., Branscomb, E., Predki, P., Richardson, P., Wenning, S., Slezak, T., Doggett, N., Cheng, J.F., Olsen, A., Lucas, S., Elkin, C., Uberbacher, E.C., Frazier, M., Gibbs, R.A., Muzny, D.M., Scherer, S.E., Bouck, J.B., Sodergren, E.J., Worley, K.C., Rives, C.M., Gorrell, J.H., Metzker, M.L., Naylor, S.L., Kucherlapati, R.S., Nelson, D.L., Weinstock, G.M., Sakaki, Y., Fujiyama, A., Hattori, M., Yada, T., Toyoda, A., Itoh, T., Kawagoe, C., Watanabe, H., Totoki, Y., Taylor, T., Weissenbach, J., Heilig, R., Saurin, W., Artiguenave, F., Brottier, P., Bruls, T., Pelletier, E., Robert, C., Wincker, P., Rosenthal, A., Platzer, M., Nyakatura, G., Taudien, S., Rump, A., Yang, H.M., Yu, J., Wang, J., Huang, G.Y., Gu, J., Hood, L., Rowen, L., Madan, A., Qin, S.Z., Davis, R.W., Federspiel, N.A., Abola, A.P., Proctor, M.J., Myers, R.M., Schmutz, J., Dickson, M., Grimwood, J., Cox, D.R., Olson, M.V., Kaul, R., Shimizu, N., Kawasaki, K., Minoshima, S., Evans, G.A., Athanasiou, M., Schultz, R., Roe, B.A., Chen, F., Pan, H.Q., Ramser, J., Lehrach, H., Reinhardt, R., McCombie, W.R., De la Bastide, M., Dedhia, N., Blocker, H., Hornischer, K., Nordsiek, G., Agarwala, R., Aravind, L., Bailey, J.A., Bateman, A., Batzoglou, S., Birney, E., Bork, P., Brown, D.G., Burge, C.B., Cerutti, L., Chen, H.C., Church, D., Clamp, M., Copley, R.R., Doerks, T., Eddy, S.R., Eichler, E.E., Furey, T.S., Galagan, J., Gilbert, Jgr, Harmon, C., Hayashizaki, Y., Haussler, D., Hermjakob, H., Hokamp, K., Jang, W.H., Johnson, L.S., Jones, T.A., Kasif, S., Kaspryzk, A., Kennedy, S., Kent, W.J., Kitts, P., Koonin, E.V., Korf, I., Kulp, D., Lancet, D., Lowe, T.M., McLysaght, A., Mikkelsen, T., Moran, J.V., Mulder, N., Pollara, V.J., Ponting, C.P., Schuler, G., Schultz, J.R., Slater, G., Smit, A.F.A., Stupka, E., Szustakowki, J., Thierry-Mieg, D., Thierry-Mieg, J., Wagner, L., Wallis, J., Wheeler, R., Williams, A., Wolf, Y.I., Wolfe, K.H., Yang, S.P., Yeh, R.F., Collins, F., Guyer, M.S., Peterson, J., Felsenfeld, A., Wetterstrand, K.A., Patrinos, A., and Morgan, M.J.
- Abstract
The human genome holds an extraordinary trove of information about human development, physiology, medicine and evolution. Here we report the results of an international collaboration to produce and make freely available a draft sequence of the human genome. We also present an initial analysis of the data, describing some of the insights that can be gleaned from the sequence.
- Published
- 2009
50. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.
- Author
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Yamasaki, C., Murakami, K., Fujii, Y., Sato, Y., Harada, E., Takeda, J-I, Taniya, T., Sakate, R., Kikugawa, S., Shimada, M., Tanino, M., Koyanagi, K.O., Barrero, R.A., Gough, C., Chun, H-W, Habara, T., Hanaoka, H., Hayakawa, Y., Hilton, P.B., Kaneko, Y., Kanno, M., Kawahara, Y., Kawamura, T., Matsuya, A., Nagata, N., Nishikata, K., Noda, A.O., Nurimoto, S., Saichi, N., Sakai, H., Sanbonmatsu, R., Shiba, R., Suzuki, M., Takabayashi, K., Takahashi, A., Tamura, T., Tanaka, M., Tanaka, S., Todokoro, F., Yamaguchi, K., Yamamoto, N., Okido, T., Mashima, J., Hashizume, A., Jin, L., Lee, K-B, Lin, Y-C, Nozaki, A., Sakai, K., Tada, M., Miyazaki, S., Makino, T., Ohyanagi, H., Osato, N., Tanaka, N., Suzuki, Y., Ikeo, K., Saitou, N., Sugawara, H., O'Donovan, C., Kulikova, T., Whitfield, E., Halligan, B., Shimoyama, M., Twigger, S., Yura, K., Kimura, K., Yasuda, T., Nishikawa, T., Akiyama, Y., Motono, C., Mukai, Y., Nagasaki, H., Suwa, M., Horton, P., Kikuno, R., Ohara, O., Lancet, D., Eveno, E., Graudens, E., Imbeaud, S., Debily, M.A., Hayashizaki, Y., Amid, C., Han, M., Osanger, A., Endo, T., Thomas, M.A., Hirakawa, M., Makalowski, W., Nakao, M., Kim, N-S, Yoo, H-S, De Souza, S.J., Bonaldo, M., Niimura, Y., Kuryshev, V., Schupp, I., Wiemann, S., Bellgard, M., Shionyu, M., Jia, L., Thierry-Mieg, D., Thierry-Mieg, J., Wagner, L., Zhang, Q., Go, M., Minoshima, S., Ohtsubo, M., Hanada, K., Tonellato, P., Isogai, T., Zhang, J., Lenhard, B., Kim, S., Chen, Z., Hinz, U., Estreicher, A., Nakai, K., Makalowska, I., Hide, W., Tiffin, N., Wilming, L., Chakraborty, R., Soares, M.B., Chiusano, M.L., Auffray, C., Yamaguchi-Kabata, Y., Itoh, T., Hishiki, T., Fukuchi, S., Nishikawa, K., Sugano, S., Nomura, N., Tateno, Y., Imanishi, T., Gojobori, T., Yamasaki, C., Murakami, K., Fujii, Y., Sato, Y., Harada, E., Takeda, J-I, Taniya, T., Sakate, R., Kikugawa, S., Shimada, M., Tanino, M., Koyanagi, K.O., Barrero, R.A., Gough, C., Chun, H-W, Habara, T., Hanaoka, H., Hayakawa, Y., Hilton, P.B., Kaneko, Y., Kanno, M., Kawahara, Y., Kawamura, T., Matsuya, A., Nagata, N., Nishikata, K., Noda, A.O., Nurimoto, S., Saichi, N., Sakai, H., Sanbonmatsu, R., Shiba, R., Suzuki, M., Takabayashi, K., Takahashi, A., Tamura, T., Tanaka, M., Tanaka, S., Todokoro, F., Yamaguchi, K., Yamamoto, N., Okido, T., Mashima, J., Hashizume, A., Jin, L., Lee, K-B, Lin, Y-C, Nozaki, A., Sakai, K., Tada, M., Miyazaki, S., Makino, T., Ohyanagi, H., Osato, N., Tanaka, N., Suzuki, Y., Ikeo, K., Saitou, N., Sugawara, H., O'Donovan, C., Kulikova, T., Whitfield, E., Halligan, B., Shimoyama, M., Twigger, S., Yura, K., Kimura, K., Yasuda, T., Nishikawa, T., Akiyama, Y., Motono, C., Mukai, Y., Nagasaki, H., Suwa, M., Horton, P., Kikuno, R., Ohara, O., Lancet, D., Eveno, E., Graudens, E., Imbeaud, S., Debily, M.A., Hayashizaki, Y., Amid, C., Han, M., Osanger, A., Endo, T., Thomas, M.A., Hirakawa, M., Makalowski, W., Nakao, M., Kim, N-S, Yoo, H-S, De Souza, S.J., Bonaldo, M., Niimura, Y., Kuryshev, V., Schupp, I., Wiemann, S., Bellgard, M., Shionyu, M., Jia, L., Thierry-Mieg, D., Thierry-Mieg, J., Wagner, L., Zhang, Q., Go, M., Minoshima, S., Ohtsubo, M., Hanada, K., Tonellato, P., Isogai, T., Zhang, J., Lenhard, B., Kim, S., Chen, Z., Hinz, U., Estreicher, A., Nakai, K., Makalowska, I., Hide, W., Tiffin, N., Wilming, L., Chakraborty, R., Soares, M.B., Chiusano, M.L., Auffray, C., Yamaguchi-Kabata, Y., Itoh, T., Hishiki, T., Fukuchi, S., Nishikawa, K., Sugano, S., Nomura, N., Tateno, Y., Imanishi, T., and Gojobori, T.
- Abstract
Here we report the new features and improvements in our latest release of the H-Invitational Database (H-InvDB; http://www.h-invitational.jp/), a comprehensive annotation resource for human genes and transcripts. H-InvDB, originally developed as an integrated database of the human transcriptome based on extensive annotation of large sets of full-length cDNA (FLcDNA) clones, now provides annotation for 120 558 human mRNAs extracted from the International Nucleotide Sequence Databases (INSD), in addition to 54 978 human FLcDNAs, in the latest release H-InvDB_4.6. We mapped those human transcripts onto the human genome sequences (NCBI build 36.1) and determined 34 699 human gene clusters, which could define 34 057 (98.1%) protein-coding and 642 (1.9%) non-protein-coding loci; 858 (2.5%) transcribed loci overlapped with predicted pseudogenes. For all these transcripts and genes, we provide comprehensive annotation including gene structures, gene functions, alternative splicing variants, functional non-protein-coding RNAs, functional domains, predicted sub cellular localizations, metabolic pathways, predictions of protein 3D structure, mapping of SNPs and microsatellite repeat motifs, co-localization with orphan diseases, gene expression profiles, orthologous genes, protein-protein interactions (PPI) and annotation for gene families. The current H-InvDB annotation resources consist of two main views: Transcript view and Locus view and eight sub-databases: the DiseaseInfo Viewer, H-ANGEL, the Clustering Viewer, G-integra, the TOPO Viewer, Evola, the PPI view and the Gene family/group.
- Published
- 2008
Catalog
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