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A vast number of experiments have now shown that helium nanodroplets are an exemplary cryogenicmatrix for spectroscopic investigations. The experimental techniques are well established and involve in most cases the pickup of evaporated neutral species by helium droplets. These techniques have been extended within our research group to enable nanodroplet pickup of anions or cations stored in an ion trap. By using electrospray ionization (ESI) in combination with modern mass spectrometric methods to supply ions to the trap, an immense variety of mass-to-charge selected species can be doped into the droplets and spectroscopically investigated. We have combined this droplet doping methodology with IR action spectroscopy to investigate anions and cations ranging in size from a few atoms to proteins that consist of thousands of atoms. Herein, we show examples of small complexes of fluoride anions (F-) with CO2 and H2O and carbohydrate molecules. In the case of the small complexes, novel compounds could be identified, and quantum chemistry can in some instances quantitatively explain the results. For biologically relevant complex carbohydrate molecules, the IR spectra are highly diagnostic and allow the differentiation of species that would be difficult or impossible to identify by more conventional methods. [ABSTRACT FROM AUTHOR]

An approach to mono- and divalent C-aminoglycosides starting from a new enantiopure 1,2-oxazine derivative is described. The introduction of a vinyl group into the 1,3-dioxolanyl substituent of a 1,2-oxazine allowed the Lewis acid promoted preparation of a vinyl-substituted bicyclic 1,2-oxazinone. After reduction of the carbonyl group, exhaustive hydrogenolysis provided branched C-aminoglycosides either with β-D-talose or β-D-idose configuration. The vinyl group of the protected rearrangement product 8 also allowed a self-metathesis with Grubbs II catalyst providing a 'dimeric' compound as an E/Z mixture. Its hydrogenolysis furnished the divalent C-aminoglycoside in good overall yield. [ABSTRACT FROM AUTHOR]

Fucose is a signaling carbohydrate that is attached at the end of glycan processing. It is involved in a range of processes, such as the selectin-dependent leukocyte adhesion or pathogen-receptor interactions. Mass-spectrometric techniques, which are commonly used to determine the structure of glycans, frequently show fucose-containing chimeric fragments that obfuscate the analysis. The rearrangement leading to these fragments-often referred to as fucose migration-has been known for more than 25 years, but the chemical identity of the rearrangement product remains unclear. In this work, we combine ion-mobility spectrometry, radical-directed dissociation mass spectrometry, cryogenic IR spectroscopy of ions, and density-functional theory calculations to deduce the product of the rearrangement in the model trisaccharides Lewis x and blood group H2. The structural search yields the fucose moiety attached to the galactose with an α(1→6) glycosidic bond as the most likely product., (© 2023 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH.)

1-Deoxysphingolipids are a recently described class of sphingolipids that have been shown to be associated with several disease states including diabetic and hereditary neuropathy. The identification and characterization of 1-deoxysphingolipids and their metabolites is therefore highly important. However, exact structure determination requires a combination of sophisticated analytical techniques due to the presence of various isomers, such as ketone/alkenol isomers, carbon-carbon double-bond (C=C) isomers and hydroxylation regioisomers. Here we demonstrate that cryogenic gas-phase infrared (IR) spectroscopy of ionized 1-deoxysphingolipids enables the identification and differentiation of isomers by their unique spectroscopic fingerprints. In particular, C=C bond positions and stereochemical configurations can be distinguished by specific interactions between the charged amine and the double bond. The results demonstrate the power of gas-phase IR spectroscopy to overcome the challenge of isomer resolution in conventional mass spectrometry and pave the way for deeper analysis of the lipidome., (© 2020 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA.)

The stereoselective formation of 1,2-cis-glycosidic bonds is challenging. However, 1,2-cis-selectivity can be induced by remote participation of C4 or C6 ester groups. Reactions involving remote participation are believed to proceed via a key ionic intermediate, the glycosyl cation. Although mechanistic pathways were postulated many years ago, the structure of the reaction intermediates remained elusive owing to their short-lived nature. Herein, we unravel the structure of glycosyl cations involved in remote participation reactions via cryogenic vibrational spectroscopy and first principles theory. Acetyl groups at C4 ensure α-selective galactosylations by forming a covalent bond to the anomeric carbon in dioxolenium-type ions. Unexpectedly, also benzyl ether protecting groups can engage in remote participation and promote the stereoselective formation of 1,2-cis-glycosidic bonds., (© 2020 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA.)

Fucose is an essential deoxysugar that is found in a wide range of biologically relevant glycans and glycoconjugates. A recurring problem in mass spectrometric analyses of fucosylated glycans is the intramolecular migration of fucose units, which can lead to erroneous sequence assignments. This migration reaction is typically assigned to activation during collision-induced dissociation (CID) in tandem mass spectrometry (MS). In this work, we utilized cold-ion spectroscopy and show for the first time that fucose migration is not limited to fragments obtained in tandem MS and can also be observed in intact glycan ions. This observation suggests a possible low-energy barrier for this transfer reaction and generalizes fucose migration to an issue that may universally occur in any type of mass spectrometry experiment., (© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)

Fluoroformate, also known as carbonofluoridate, is an intriguing molecule readily formed by the reductive derivatization of carbon dioxide. In spite of its well-known stability, a detailed structural characterization of the isolated anion has yet to be reported. Presented in this work is the vibrational spectrum of fluoroformate obtained by infrared action spectroscopy of ions trapped in helium nanodroplets, the first application of this technique to a molecular anion. The experimental method yields narrow spectral lines, providing experimental constraints on the structure that can be accurately reproduced using high-level ab initio methods. In addition, two notable Fermi resonances between a fundamental and combination band are observed. The electrostatic potential map of fluoroformate reveals substantial charge density on fluorine as well as on the oxygen atoms, suggesting multiple sites for interaction with hydrogen bond donors and electrophiles, which may in turn lead to intriguing solvation structures and reaction pathways.

The diversity of stereochemical isomers present in glycans and glycoconjugates poses a formidable challenge for comprehensive structural analysis. Typically, sophisticated mass spectrometry (MS)-based techniques are used in combination with chromatography or ion-mobility separation. However, coexisting structurally similar isomers often render an unambiguous identification impossible. Other powerful techniques such as gas-phase infrared (IR) spectroscopy have been limited to smaller glycans, since conformational flexibility and thermal activation during the measurement result in poor spectral resolution. This limitation can be overcome by using cold-ion spectroscopy. The vibrational fingerprints of cold oligosaccharide ions exhibit a wealth of well-resolved absorption features that are diagnostic for minute structural variations. The unprecedented resolution of cold-ion spectroscopy coupled with tandem MS may render this the key technology to unravel complex glycomes., (© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)

Here we present a combined experimental and theoretical study on the secondary structure of isolated proteins as a function of charge state. In infrared spectra of the proteins ubiquitin and cytochrome c, amide I (C=O stretch) and amide II (N-H bend) bands can be found at positions that are typical for condensed-phase proteins. For high charge states a new band appears, substantially red-shifted from the amide II band observed at lower charge states. The observations are interpreted in terms of Coulomb-driven transitions in secondary structures from mostly helical to extended C5 -type hydrogen-bonded structures. Support for this interpretation comes from simple energy considerations as well as from quantum chemical calculations on model peptides. This transition in secondary structure is most likely universal for isolated proteins that occur in mass spectrometric experiments., (© 2016 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA.)