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Copyright of Anbar Journal of Agricultural Sciences is the property of Republic of Iraq Ministry of Higher Education & Scientific Research (MOHESR) and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Salt stress disturbs the cellular osmotic and ionic balance, which then creates a negative impact on plant growth and development. The Na+ and Cl− ions can enter into plant cells through various membrane transporters, including specific and non‐specific Na+, K+, and Ca2+ transporters. Therefore, it is important to understand Na+ and K+ transport mechanisms in plants along with the isolation of genes, their characterization, the structural features, and their post‐translation regulation under salt stress. This review summarizes the molecular insights of plant ion transporters, including non‐selective cation transporters, cyclic nucleotide‐gated cation transporters, glutamate‐like receptors, membrane intrinsic proteins, cation proton antiporters, and sodium proton antiporter families. Further, we discussed the K+ transporter families such as high‐affinity K+ transporters, HAK/KUP/KT transporters, shaker type K+ transporters, and K+ efflux antiporters. Besides the ion transport process, we have shed light on available literature on epigenetic regulation of transport processes under salt stress. Recent advancements of salt stress sensing mechanisms and various salt sensors within signaling transduction pathways are discussed. Further, we have compiled salt‐stress signaling pathways, and their crosstalk with phytohormones. [ABSTRACT FROM AUTHOR]

The article discusses the career and achievements of Gary D. Foster, who has been named an honorary member of the British Society for Plant Pathology (BSPP). Foster grew up in Northern Ireland and initially had interests in motorbikes and rugby, but a broken ankle led him to pursue studying. He eventually developed a passion for plant virology and went on to conduct research on potato viruses and plant transformation. Foster has made significant contributions to the field and has been involved in various projects and collaborations. He is particularly proud of his work with the Community Network for African Vector-Borne Plant Viruses and his role as Editor-in-Chief of the BSPP journal Molecular Plant Pathology. Foster expresses gratitude for being named an honorary member of the BSPP. [Extracted from the article]

In this study, we isolated thirty-eight microsatellite loci from the draft genome of large yellow croaker, Pseudosciaena crocea. These loci were tested on 34 individuals from Zhangzhou prefecture city in Fujian. Most loci were highly polymorphic. A total of 214 alleles were detected with an average of 5.63 alleles per locus. The observed and expected heterozygosity ranged from 0.454 to 0.909 and from 0.503 to 0.918, with an average of 0.635 and 0.744, respectively. The PIC values of these loci ranged from 0.372 to 0.878, with an average of 0.712. Eight loci significantly deviated from Hardy-Weinberg equilibrium (HWE). Significant linkage disequilibrium (LD) was not found in these 38 loci. The newly identified polymorphic markers will contribute to the study of genetic diversity, population structure, and conservation of P. crocea. [ABSTRACT FROM AUTHOR]

Copyright of Chinese Journal of Oil Crop Sciences is the property of Oil Crops Research Institute of Chinese Academy of Agricultural Sciences and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Mitochondrial genome sequence of Vannella croatica (Amoebozoa, Discosea, Vannellida) was obtained using pulse‐field gel electrophoretic isolation of the circular mitochondrial DNA, followed by the next‐generation sequencing. The mitochondrial DNA of this species has the length of 28,933 bp and contains 12 protein‐coding genes, two ribosomal RNAs, and 16 transfer RNAs. Vannella croatica mitochondrial genome is relatively short compared to other known amoebozoan mitochondrial genomes but is rather gene‐rich and contains significant number of open reading frames. [ABSTRACT FROM AUTHOR]

This study was conducted to identify the antimelanogenic components from Raphanus sativus L. var. niger (black radish). Phytochemical study with the ethanol extract of black radish roots resulted in the isolation of six compounds: 3‐(E)‐(methylthio)methylene‐2‐pyrrolidinethione (1), ascorbigen (2), β‐sitosterol (3), palmitic acid (4), α‐linolenic acid (5), and 1‐linoleonyl glycerol (6). Among the isolates, the thione 1 efficiently inhibited melanin synthesis in a concentration‐dependent manner in α‐MSH stimulated B16F10 melanoma cells. Western blotting analysis for the key melanogenic enzymes showed that compound 1 decreased tyrosinase and tyrosinase‐related protein‐2 expressions. These results demonstrated that the black radish extract including pyrrolidinethione 1 could be useful as antimelanogenic agents in cosmetic or pharmaceutical applications. Phytochemical studies of ethanol extract from black radish (Raphanus sativus L. var. niger) roots led to isolation of six compounds including 3‐(E)‐(methylthio)methylene‐2‐pyrrolidinethione (1) (a). Compound 1 reduced melanin production in a dose‐dependent manner in α‐MSH stimulated B16F10 melanoma cells (b). Also, the cellular tyrosinase activity was downregulated by compound 1 (c). [ABSTRACT FROM AUTHOR]

Abstract: Ear shape substantially correlates to grain yield, so understanding their genetic architecture is of great significance in maize breeding. Ear length (EL), ear diameter (ED), length of barren tip (LBT) and cob diameter (CD) were determined for 240 doubled haploid maize lines, and all four traits showed a relatively high broad sense heritability around 77%. Using this DH population consisting of 240 lines and a genetic map constructed from 964 SNPs, a total of five, four and three QTLs were identified for EL, ED and CD, respectively, in three various growing conditions. Among these, qEL1‐1, qED1 and qCD1 were consistently mapped at an overlapping location on Chr1, which contributed 15.7, 28.3 and 22.6% of the phenotypic variation in EL, ED and CD, respectively. All other QTLs exhibited minor effect with the phenotypic variation explained ranging from 4.7% to 7.8%. Because most of the QTLs were detected in at least two different planting environments, they appear to be potential loci for gene isolation and marker development in maize molecular breeding. [ABSTRACT FROM AUTHOR]

High-resolution mitogenomics of within-species relationships can answer such phylogeographic questions as how species survived the most recent glaciation, as well as identify contemporary factors such as physical barriers, isolation, and gene flow. We examined the mitogenomic population structure of three at-risk species of wolffish: Atlantic (Anarhichas lupus), spotted (A. minor), and northern (A. denticulatus). These species are extensively sympatric across the North Atlantic but exhibit very different life history strategies, a combination that results in concordant and discordant patterns of genetic variation and structure. Wolffish haplogroups were not structured geographically: Atlantic and spotted wolffish each comprised three shallow clades, whereas northern wolffish comprised two deeper but unstructured lineages. We suggest that wolffish species survived in isolation in multiple glacial refugia, either refugia within refugia (Atlantic and spotted wolffish) or more distant refugia (northern wolffish), followed by secondary admixture upon post-glacial recolonisation of the North Atlantic. [ABSTRACT FROM AUTHOR]

Aim The current study presents the first report of isolation of bioactive compound (salicylic acid) from seeds of Cleome viscosa L. confirmed by its characterization by infrared (IR) spectroscopy, nuclear magnetic resonance ( 1 H NMR and 13 C NMR) spectroscopy and mass spectroscopy. The present work is the first report of HPTLC densitometric method, which has been developed and validated for quantification of a marker compound (salicylic acid) from ethyl acetate extract using the solvent system of ethyl acetate: acetonitrile (1.1:0.9, v /v). Material and methods TLC glass plates pre-coated with silica gel F 366 (stationary phase) were used. Densitometric analysis of salicylic acid was performed in reflectance mode at 366 nm. Result The developed compact spot for salicylic acid at R f 0.51. ICH guidelines were used to validate this method in terms of precision, repeatability and accuracy. Linearity range for salicylic acid was 10–50 ng/spot and the content of salicylic acid was found to be 0.9 ± 0.04 μg/g of seed. The limit of detection (LOD) and limit of quanitification (LOQ) values for salicylic acid were 4 ng and 8 ng, respectively. Better resolution from other present constituents present in the extract were obtained by this developed simple, precise and accurate method. Conclusion The study concluded the presence of Salicylic acid as active compound present in seeds of C viscosa . The present HPTLC-densitometric method may be used for routine quality control analysis for salicylic acid quantification from Cleome viscosa L. [ABSTRACT FROM AUTHOR]

Abstract: Uncaria rhynchophylla (Gou‐Teng) as the monarch herb of many formulae (Fufang), e.g. “Tian‐Ma‐Gou‐Teng‐Yin,” “Ling‐Jiao‐Gou‐Teng‐Yin,” and “Yi‐Gan‐San”, is a famous traditional Chinese medicine documented in the Chinese pharmacopoeia for mental and cardiovascular diseases. In the traditional Chinese medicine system, only the hook‐bearing stems are used as the crude materials for Gou‐Teng, and the hooks are always considered more effective than the stems. Focusing on the mono‐herb and its active constituents from combinatorial formulae is the core idea of reductionism of traditional Chinese medicine theory. Detailed liquid chromatography with mass spectrometry analysis on the hooks of U. rhynchophylla was performed to profile the chemical constituents based on tandem mass spectrometry fragmentation and UV absorption. Under the guidance of liquid chromatography with ion trap/time‐of‐flight mass spectrometry, one new indole alkaloid triglycoside (1), together with five known compounds 2–6 as the main constituents, were isolated from the hooks of U. rhynchophylla by various column chromatography methods. Compound 1 showed moderate activity on MT1 and MT2 melatonin receptors with agonistic rates of 79.6 and 46.3% at the concentration of 1 mM. This dereplication strategy can be equally applicable to rapidly disclose the active constituents of other Chinese herbs through targeted purification. [ABSTRACT FROM AUTHOR]

This study was conducted to isolate actinomycetes from forest areas of Tamilnadu, to check the antibacterial efficacy of the biomolecules produced by the isolates and their application as antibacterial textile finish. The cross streak plate method and disc diffusion methods were used for screening the actinomycetes isolates for determining antibacterial activity. Chromatographic techniques were used for the partial purification of biomolecules. Partially purified biomolecules were analysed by spectroscopy. Standard procedure was followed for the impregnation of biomolecule on cotton cloth and antibacterial activity studies. Twenty two actinomycetes were isolated from forest soil and screened for antibacterial activity.. On secondary screening the strains KUAJ1 and KUAJ5 exhibited antibacterial activity against the test organisms. KUAJ1 extract produced a maximum zone of inhibition of 21mm against Klebsiella sp and KUAJ5 extract produced a maximum zone of inhibition of 22mm against Bacillus subtilis. The products were partially purified and further analyzed by spectroscopy. On UV - visible spectroscopy maximum absorption spectra of 218 and 240 nm were shown respectively by KUAJ1 and KUAJ5.FTIR results exhibited O-H, C-H and CH2-S groups in KUAJ1 and N-H, CH3-S groups in KUAJ5 extract. Extracted compounds were coated on cotton fabric and its antibacterial activities were tested. This study proves that the actinomycetes isolated from Tamilnadu forest soil shows antibacterial activites and the active biomolecules produced by isolates could be used for antibacterial textile finish on 100% cotton material. [ABSTRACT FROM AUTHOR]

Saccharum arundinaceus is one of the most important species of sugarcane related species, and with strong resistance. Superoxide dismutases (SODs) play an important role in stress tolerance in plants. In this paper, two novel full-length cDNA sequence of the Cu/Zn SOD gene, denoted as SaSOD-1a and SoSOD1a (GenBank Accession number KJ002569 and KT327179), were isolated from S. arundinaceus and sugarcane, respectively. SaSOD-1a cDNA is 689 bp in length, including 33 bp of 5'-untranslated region (UTR) and 35 bp of the 3'-UTR, and a 621-bp open reading frame (ORF) encoding a 206 amino-acid sequence of the protein which has a conserved domain of superoxide dismutase belonging the SOD family. The SoSOD1a sequence is 690 bp, containing a 600 bp ORF, a 36-bp 5'-UTR and 54-bp 3'-UTR. It encoded the 199 amino-acid sequence of the protein which also has a conserved domain of superoxide dismutase belonging the SOD family. Between these two sequences, there was 97.5% similarity, 17 single nucleotide polymorphism (SNP) sites and 4 small insertion/deletion fragments; 95.5% protein similarity and 10 amino-acid mutation sites. In homologous evolutionary analysis, the Cu/Zn SOD genes from different plant species were rather conservative. Sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE) analysis showed that the prokaryotic expression product was a fusion protein. Real-time quantitative polymerase chain reaction analysis demonstrated that the expression profile of SaSOD-1a and SoSOD1a were different under various drought stress duration. It was also suggested that SOD1a has a different drought response mode in sugarcane and the wild species S. arundinaceus. [ABSTRACT FROM AUTHOR]

Abstract: In this study, the effect of different isolation techniques on the isolated proteins from pigeon pea was investigated. Water, methanol, ammonium sulfate, and acetone were used for the precipitation of proteins from pigeon pea. Proximate composition, and antinutritional and functional properties of the pigeon pea flour and the isolated proteins were measured. Data generated were statistically analyzed. The proximate composition of the water‐extracted protein isolate was moisture 8.30%, protein 91.83%, fat 0.25%, ash 0.05%, and crude fiber 0.05%. The methanol‐extracted protein isolate composition was moisture 7.87%, protein 91.83%, fat 0.17%, and ash 0.13%, while crude fiber and carbohydrates were not detected. The composition of the ammonium sulfate‐extracted protein isolate was moisture 7.73%, protein 91.73%, fat 0.36, ash 0.13%, and crude fiber 0.67%. The acetone‐extracted protein isolate composition was moisture 8.03%, protein 91.50%, ash 0.67%, and fat 0.30%, but crude fiber and carbohydrates were not detected. The isolate precipitated with ammonium sulfate displayed the highest foaming capacity (37.63%) and foaming stability (55.75%). Isolates precipitated with methanol and acetone had the highest water absorption capacity (160%). Pigeon pea protein isolates extracted with methanol and ammonium sulfate had the highest oil absorption capacity of 145%. Protein isolates recovered through acetone and methanol had the highest emulsifying capacity of 2.23% and emulsifying stability of 91.47%, respectively. The proximate composition of the recovered protein isolates were of high purity. This shows the efficiency of the extraction techniques. The isolates had desirable solubility index. All the isolation techniques brought significant impact on the characteristics of the isolated pigeon pea protein. [ABSTRACT FROM AUTHOR]

Carolina hemlock ( Tsuga caroliniana Engelm.) is a rare conifer species that exists in small, isolated populations within a limited area of the Southern Appalachian Mountains of the USA. As such, it represents an opportunity to assess whether population size and isolation can affect the genetic diversity and differentiation of a species capable of long-distance gene flow via wind-dispersed pollen and seed. This information is particularly important in a gene conservation context, given that Carolina hemlock is experiencing mortality throughout its range as a result of infestation by hemlock wooly adelgid ( Adelges tsugae Annand), an exotic insect. In this study, 439 Carolina hemlock trees from 29 areas (analyzed as populations) were sampled, representing an extensive range-wide sampling of the species. Data from 12 polymorphic nuclear microsatellite loci were collected and analyzed for these samples. The results show that populations of Carolina hemlock are extremely inbred ( F = 0.713) and surprisingly highly differentiated from each other ( F = 0.473) with little gene flow (N = 0.740). Additionally, most populations contained at least one unique allele. This level of differentiation is unprecedented for a North American conifer species. Numerous genetic clusters were inferred using two different clustering approaches. The results clearly demonstrate that, existing as a limited number of small and isolated populations, Carolina hemlock has insufficient gene flow to avoid widespread genetic drift and inbreeding, despite having the capacity to disperse pollen and seed relatively long distances by wind. These results have important conservation implications for this imperiled species. [ABSTRACT FROM AUTHOR]

Isolation and demographic history are key factors that affect lineage divergence of tree species in topographic complex areas, such as the Qinghai-Tibet Plateau (QTP), yet few studies have evaluated these factors in a coalescent-based modeling framework. In the present study, we surveyed ten nuclear DNA sequence loci (nDNA) and six nuclear microsatellite loci (nSSR) for an endangered conifer, Cupressus chengiana, throughout its natural range in the eastern QTP. BARRIER analyses revealed a strong genetic barrier between Gansu and Sichuan populations of C. chengiana, and isolation with migration models detected limited gene flow between them, supporting the division of this species into two evolutionary significant units (ESUs). Two independent coalescent-based approaches suggest a Quaternary divergence between ESUs, their consensus age range ((0.09-) 0.59-1.53 (-2.71) Mya) largely overlaps with the time period when the largest glaciation occurred in the QTP. Both demographic inferences, IMa2 and DIYABC, suggest that both ESUs may have experienced a bottleneck or population contraction event during the late Quaternary. A documented massive recent anthropogenic habitat loss and fragmentation may have led to further decrease of the natural distribution of this conifer. We propose that the conservation and management of both natural stands and plantations of C. chengiana should be reconsidered in the light of our findings. [ABSTRACT FROM AUTHOR]

The introduction of genes isolated from different Bacillus thuringiensis strains to express Cry-type toxins in transgenic crops is a common strategy to confer insect resistance traits. This work intended to extensively in silico analyse Cry1A(b)16 protein for the identification of peptide markers for the biorecognition of transgenic crops. By combining two different strategies based on several bioinformatic tools for linear epitope prediction, a set of seven peptides was successfully selected as potential Cry1A(b)16 immunogens. For the prediction of conformational epitopes, Cry1A(b)16 models were built on the basis of three independent templates of homologue proteins of Cry1A(a) and Cry1A(c) using an integrated approach. PcH_736-746 and PcH_876-886 peptides were selected as the best candidates, being synthesised and used for the production of polyclonal antibodies. To the best of our knowledge, this is the first attempt of selecting and defining linear peptides as immunogenic markers of Cry1A(b)-type toxins in transgenic maize. [ABSTRACT FROM AUTHOR]

Causing potato brown rot, Ralstonia solanacearum (R. solanacearum) strains are reported as one of the most destructive bacteria to potato ( Solanum tuberosum L.) in China. In this study, 113 strains were isolated from potato, collected in the four major agroecological zones in China. The study showed that 102 strains belonged to the phylotype IIB sequevar 1 (race 3 biovar 2). The 11 remaining strains belonged to the phylotype I, sequevar 13, 17, 18, 16 or 14 M, a new sequevar closely related to sequevar 14. Thirty-four strains were further characterized according to their virulence at low temperature on three wild potato species. IIB-1 strains all belonged to high and moderate virulence, while others belonged to the low virulence group, which had limited pathogenicity. [ABSTRACT FROM AUTHOR]

The article offers information on the transfer of glucanase gene to resist late blight disease in potato. Topics discussed include information on the important role of the potato in the food chain as good and cheap source of carbohydrates, vitamins, minerals and proteins; discussions on the recognition of plant defense mechanism by isolation and characterization of plant genes and proteins; and the information on the complex defense mechanism of the plant.

The NAC (NAM, ATAF1/2, CUC2) transcription factor gene family is plant-specific and plays diverse roles in development and responses to abiotic stresses and pathogen challenge. Oilseed rape (Brassica napus) or canola is an important oil crop worldwide, however, the function of NAC genes in it remains largely elusive. In the present study, we identified and characterized the NAC56 gene isolated from oilseed rape. Expression of BnaNAC56 was induced by abscisic acid (ABA), jasmonic acid (JA), methyl viologen (MV) and a necrotrophic fungal pathogen Sclerotinia sclerotiorum, but repressed by cold. BnaNAC56 is a transcription activator and localized to nuclei. Overexpression of BnaNAC56 induced reactive oxygen species (ROS) accumulation and hypersensitive response (HR)-like cell death, with various physiological measurements supporting these. Furthermore, BnaNAC56 expression caused evident nuclear DNA fragmentation. Moreover, quantitative reverse transcription PCR (qRT-PCR) analysis identified that the expression levels of multiple genes regulating ROS homeostasis, cell death and defense response were significantly induced. Using a dual luciferase reporter assay, we further confirmed that BnaNAC56 could activate the expression of a few ROS- and cell death-related genes. In summary, our data demonstrate that BnaNAC56 functions as a stress-responsive transcriptional activator and plays a role in modulating ROS accumulation and cell death. [ABSTRACT FROM AUTHOR]

Sucrose non-fermenting 1-related protein kinases (SnRKs) comprise a major family of signaling genes in plants and are associated with metabolic regulation, nutrient utilization and stress responses. This gene family has been proposed to be involved in sucrose signaling. In the present study, we cloned three copies of the TaSnRK2.10 gene from bread wheat on chromosomes 4A, 4B and 4D. The coding sequence (CDS) is 1086 bp in length and encodes a protein of 361 amino acids that exhibits functional domains shared with SnRK2s. Based on the haplotypes of TaSnRK2.10-4A (Hap-4A-H and Hap-4A-L), a cleaved amplified polymorphic sequence (CAPS) marker designated TaSnRK2.10-4A-CAPS was developed and mapped between the markers D-1092101 and D-100014232 using a set of recombinant inbred lines (RILs). The TaSnRK2.10-4B alleles (Hap-4B-G and Hap-4B-A) were transformed into allele-specific PCR (AS-PCR) markers TaSnRK2.10-4B-AS1 and TaSnRK2.10-4B-AS2, which were located between the markers D-1281577 and S-1862758. No diversity was found for TaSnRK2.10-4D. An association analysis using a natural population consisting of 128 winter wheat varieties in multiple environments showed that the thousand grain weight (TGW) and spike length (SL) of Hap-4A-H were significantly higher than those of Hap-4A-L, but pant height (PH) was significantly lower. [ABSTRACT FROM AUTHOR]

The article presents a study on the isolation and structure clarification of the isolated compounds of a climbing shrub. According to the article, the climbing shrub belongs to the genus Caesalpinia of the Fabaceae family known as Caesalpinia decapetala (Roth) Alston. It further evaluates the compound's cytotoxicities against three human cancer cell lines.

Lemon (Citrus limon(L.) Burm. f.) is susceptible to mal secco, a serious vascular disease caused by the fungusPhoma tracheiphila(Petri) Kant. and Gik., as well as low temperatures. The greek lemon cultivar Adamopoulou, thought to be derived from the Portuguese cultivar Lisbon, exhibits enhanced resistance to mal secco and cold as opposed to cv. Lisbon. Suppression subtractive hybridization (SSH) was employed for the isolation of differentially expressed genes in lemon stem tissue. A subtractive cDNA library was constructed and a total of 296 clones were sequenced. The obtained sequences were edited, resulting in 56 non-redundant ESTs. Sequence analysis revealed homology to previously identified genes involved in defense mechanisms against biotic and abiotic stresses, as well as sequences with no significant similarity in the GenBank. Selected ESTs were analyzed by real-time PCR for confirmation purposes. This analysis revealed significant expression differences between the two cultivars for genes expressing allantoinase, ultraviolet-B-repressible protein, 4-coumarate:CoA ligase and other proteins that are known to be upregulated under biotic and abiotic stress conditions. [ABSTRACT FROM AUTHOR]

Flavonoids represent a wide spread group of water soluble phenolic derivatives, known for their medicinal effect. This paper is focused on identifying the functional groups present in flavonoids of Blighia sapida stem bark and root sample. The percentage yield was higher with methanol extract of the stem bark compared to the root. The GC-MS of methanol extract shows carboxylic acid which might be attributed to presence of lipids. The isolation of flavonoids by TLC and the FITR revealed the functional group -OH, C=O,CH which are majorly responsible for the medicinal effect. [ABSTRACT FROM AUTHOR]

Continental islands provide opportunities for testing the effects of isolation and migration on genetic variation in plant populations. In characteristic of continental islands is that the geographic connections between these islands, which are currently distinguished by seaways, have experienced fluctuations caused by sea-level changes due to climate oscillations during the Quaternary. Plant populations on the islands have migrated between these islands via the exposed seafloors or been isolated. Here, we examined the demographic history of a temperate shrub, Rhododendron weyrichii, which is distributed in the southwestern parts of the Japanese archipelago and on an island of South Korea, using statistical phylogeographic approaches based on the DNA sequences of two chloroplast and eight nuclear loci in samples analyzed from 18 populations on eight continental islands, and palaeodistribution modeling. Time estimates for four island populations indicate that the durations of vicariance history are different between these populations, and these events have continued since the last glacial or may have predated the last glacial. The constancy or expansion of population sizes on the Japanese islands, and in contrast a bottleneck in population size on the Korean island Jeju, suggests that these islands may have provided different conditions for sustaining populations. The result of palaeodistribution modeling indicates that the longitudinal range of the species as a whole has not changed greatly since the last glacial maximum. These results indicate that exposed seafloors during the glacial period formed both effective and ineffective migration corridors. These findings may shed light on the effects of seafloor exposure on the migration of plants distributed across continental islands. [ABSTRACT FROM AUTHOR]

Plant biotechnology provides a powerful solution to boost agricultural productivity and nutritional quality. The development process of a transgenic crop includes multiple steps that consist of gene isolation for a target trait, generation of T transgenic crops, characterization of the transgene, evaluation of agronomic performance of transgenic crops, selection of elite transgenic lines and assessment of target trait efficacy. Here, we developed elite insect-resistant transgenic rice plants that may satisfy the standards of biosafety assessments. We made a construct with the insecticide cry1Ac gene for a target trait. A total of 310 T transgenic lines were generated and underwent extensive analysis. We selected four T lines that contain a single-copy transgene inserted into intergenic regions of the rice genome. During this process, we critically analyzed the transgenic lines with five checkpoints that include single copy of transgene, its integration into intergenic region, clean T-DNA arrangement, stability of transgene through generations and substantial equivalence of transgenic plants in agronomic traits other than insect resistance. Consequently, we obtained insect-resistant transgenic rice plants that can be used in practical agriculture. [ABSTRACT FROM AUTHOR]

The chlorophyll -binding protein (CAB) serves in both photosystems (PS), I and II, as a coordinator of antenna pigments in the light-harvesting complex (LHC). The CABs constitute abundant and important proteins in the thylakoid membrane of higher plants. In our study, five CAB genes, which contained full-length cDNA sequences from the 4-year-old ginseng leaves ( Panax ginseng Meyer), were isolated and named PgCAB. Phylogenetic comparison of the members of the subfamily between ginseng and higher plants, including Arabidopsis, revealed that the putative functions of these ginseng CAB proteins were clustered into the different family of Arabidopsis CABs; two PgCABs in LHCII family and three PgCABs in LHCI family. The expression analysis of PgCABs consistently showed dark-dependent inhibition in leaves. Expression analysis during abiotic stress identified that PgCAB genes responded to heavy metal, salinity, chilling, and UV stresses differently, suggesting their specific function during photosynthesis. This is the first comprehensive study of the CAB gene family in P. ginseng. [ABSTRACT FROM AUTHOR]

LEAFY (LFY), APETALA1 (AP1), and APETALA2 (AP2) genes encode three different transcription factors that control and regulate flower initiation and development in Arabidopsis. By using 3'- and 5'-RACE analysis, we isolated and sequentially characterized TtLFY (a LEAFY-like gene), TtAP1 (a MADS-box-like gene), and TtAP2 (an AP2/ERBF-like gene) in Thermopsis turcica, an unusual endemic legume species with three free carpellated flower structure. Semiquantitative RT-PCR analysis for 18 different vegetative and reproductive tissues of T. turcica indicated TtLFY transcripts mainly in the shoot tips and young floral buds and TtAP1 transcripts in the sepals and petals; however, TtAP2 transcripts were detected in all tissues. This is the first record for a LFY-like gene, TtLFY, expressed in the shoot tips of an underground plant section and for an AP2-like gene transcript found in all tissues, similar to a housekeeping gene. [ABSTRACT FROM AUTHOR]

Syntrichia caninervis Mitt. is a typical desiccation tolerant moss from a temperate desert which has been a good resource for stress tolerant gene isolation. Dehydration responsive element binding proteins (DREBs) was proven to play an important role in responding to abiotic stress, which has been identified in many plants, and were rarely reported in moss. In this study, we cloned ten DREB genes from S. caninervis , and investigated their abiotic stress response and stress tolerance. The results showed that ten ScDREB proteins belonged to the A-5 sub-group of the DREB sub-family. Six genes, ScDREB1, ScDREB2, ScDREB4, ScDREB6, ScDREB7, and ScDREB8 were involved in the ABA-dependent signal pathway and the desiccation, salt, and cold stress response. ScDREB3 also responded to desiccation, salt, and cold stresses, but was insensitive to ABA treatment. Another gene, ScDREB5, was involved in an ABA-independent cold stress-responsive signal pathway. Two genes, ScDREB9 and ScDREB10, responded slightly or had no response to neither stress factor or ABA treatment. We transformed four typical genes into yeast cells and the stress tolerance ability of transgenic yeast was evaluated. The results showed that ScDREB3 and ScDREB5 enhanced the yeast's cold and salt tolerance. ScDREB8 and ScDREB10 conferred the osmotic, salt, cold, and high temperature stresses tolerance, especially for osmotic and salt stresses. Our results indicated that A-5 sub-group DREB genes in S. caninervis played important roles in abiotic stresses response and enhanced stress tolerance to transgenic yeast. To our knowledge, this is the first report on DREB genes characterization from desiccation tolerant moss, and this study will not only provide insight into the molecular mechanisms of S. caninervis adaptation to environmental stresses, but also provides valuable gene candidates for plant molecular breeding. [ABSTRACT FROM AUTHOR]

Key message: We uncouple host and nonhost resistance in barley to Puccinia striiformis ff. spp. hordei and tritici . We isolate, fine map, and physically anchor Rps6 to chromosome 7H in barley. Abstract: A plant may be considered a nonhost of a pathogen if all known genotypes of a plant species are resistant to all known isolates of a pathogen species. However, if a small number of genotypes are susceptible to some known isolates of a pathogen species this plant may be considered an intermediate host. Barley ( Hordeum vulgare) is an intermediate host for Puccinia striiformis f. sp. tritici ( Pst), the causal agent of wheat stripe rust. We wanted to understand the genetic architecture underlying resistance to Pst and to determine whether any overlap exists with resistance to the host pathogen, Puccinia striiformis f. sp. hordei ( Psh). We mapped Pst resistance to chromosome 7H and show that host and intermediate host resistance is genetically uncoupled. Therefore, we designate this resistance locus Rps6. We used phenotypic and genotypic selection on F families to isolate Rps6 and fine mapped the locus to a 0.1 cM region. Anchoring of the Rps6 locus to the barley physical map placed the region on a single fingerprinted contig spanning a physical region of 267 kb. Efforts are now underway to sequence the minimal tiling path and to delimit the physical region harboring Rps6. This will facilitate additional marker development and permit identification of candidate genes in the region. [ABSTRACT FROM AUTHOR]

The paper aimed to establish a duplex PCR method for simultaneous detection of Pseudomonas savastanoi pv. Phaseolicola (Psp) and Curtobacterium flaccumfaciens pv. Flaccumfaciens (Cff). Based on the argK gene of Psp in GenBank, the primers PSPF1/PSPR2 were designed. The duplex PCR assay was developed using the combined primers PSPF1/PSPR2 and CffFl/CffR2, which were specific primers for Cff. The reaction conditions were optimized and specificity and sensitivity of the duplex PCR were tested. The expected DNA fragment was specifically amplified from the genomic DNA of Psp and Cff. Specificity was confirmed in the artificially inoculated soybean samples imported. Thus, the duplex PCR developed in this study could be used for the simultaneous detection of Psp and Cff horn imported soybean. [ABSTRACT FROM AUTHOR]

The article focuses on a study which aims to isolate and characterize several polymorphic microsatellite markers which will be useful in population genetic research for bushy shrub Scaevola taccada. Information about the materials and methods used in the study is presented including genomic DNA extraction.

Two new mexicanolide-type limonoids, carapanolides T--U (1-2), and three new phragmalin-type limonoids, carapanolides V--X (3--5), were isolated from the seeds of Carapa guianensis (andiroba). Their structures were determined on the basis of 1D- and 2D-NMR spectroscopy. [ABSTRACT FROM AUTHOR]

Genome assembly remains a challenge for large and/or complex plant genomes due to their abundant repetitive regions resulting in studies focusing on gene space instead of the whole genome. Thus, DNA enrichment strategies facilitate the assembly by increasing the coverage and simultaneously reducing the complexity of the whole genome. In this paper we provide an easy, fast, and cost-effective variant of MRE-seq to obtain a plant's hypomethylome by an optimized methyl filtration protocol followed by next generation sequencing. The method is demonstrated on three plant species with knowingly large and/or complex (polyploid) genomes: Oryza sativa, Picea abies, and Crocus sativus. The identified hypomethylomes show clear enrichment for genes and their flanking regions and clear reduction of transposable elements. Additionally, genomic sequences around genes are captured including regulatory elements in introns and up- and downstream flanks. High similarity of the results obtained by a de novo assembly approach with a reference based mapping in rice supports the applicability for studying and understanding the genomes of nonmodel organisms. Hence we show the high potential of MRE-seq in a wide range of scenarios for the direct analysis of methylation differences, for example, between ecotypes, individuals, within or across species harbouring large, and complex genomes. [ABSTRACT FROM AUTHOR]

The article presents a research related to identification of a mutant for number of grains per panicle (NGP) in rice yield. Topics discussed include a decreased NGP trait with decreased panicle length and plant height identified for ngp4c mutant of wild-type parent, use of map-based cloning strategy for isolating the NGP4c(t) gene, and prediction of putative open reading frames (ORFs) between the fine-mapped regions.

A subgenomic transcript (Sgt) promoter was isolated from the genomic clone of dahlia mosaic virus (DaMV), which is a double-stranded DNA virus of the Caulimoviridae family. The DaMVSgt promoter, which is linked to the heterologous β-glucuronidase ( GUS) reporter gene, was characterized in transient protoplasts and in transgenic tobacco, as well as in Arabidopsis plants. The 5′- and 3′-deletion analysis of a 591-bp DaMVSgt promoter fragment indicated that a 441-bp promoter fragment (−372 to +69 from the transcription start site; TSS) was sufficient for maximal promoter activity. A 141-bp promoter fragment (−72 to +69 from TSS) was the minimal promoter region that also showed relatively strong activity. The three activation sequence-1 (as-1) elements and the border regions were primarily responsible for the promoter activity, as revealed by a finer internal deletion and mutation analysis of the cis-elements and of the immediate border sequence of the activation domain. Electrophoretic mobility shift assay (EMSA), supershift EMSA, DNase I footprinting, Southwestern blotting, and UV cross-linking studies demonstrated the binding of a tobacco transcription factor, TGA1a, that correlated with 2,4-dichlorophenylacetic acid (2,4D)-induced transcriptional activity of the DaMVSgt promoter. Histological GUS staining and the GUS enzymatic assay demonstrated that the 441-bp DaMVSgt4 promoter and 141-bp minimal DaMVSgt4F are 5.5 and 4.6 times, respectively, stronger than the CaMV 35S promoter. The minimal DaMVSgt4F promoter is more active than CaMV 35S in all types of green tissues and roots, without any detectable expression in reproductive tissues and seeds. The DaMVSgt4F promoter may be useful for transgene containment applications. [ABSTRACT FROM AUTHOR]

Apple ( Malus × domestica Borkh.) is a perennial woody plant that undergoes a period of dormancy (in cv. Jonathan between late September and mid-December) to survive freezing temperatures of winter. DORMANCY-ASSOCIATED MADS-BOX ( DAM) genes play important roles in the regulation of growth cessation and terminal bud formation in peach. To understand the role of DAM orthologs in apple, we isolated and characterized four DAM-like genes (designated as MdDAMa, MdDAMb, MdDAMc, and MdDAMd) and monitored their expression in apical buds throughout the season by real-time quantitative polymerase chain reaction analyses. The transcription of MdDAMa peaked in October and that of MdDAMc was elevated from August to October, whereas MdDAMb and MdDAMd were practically undetectable. The tandemly arranged genes MdDAMa/ MdDAMb and MdDAMc/ MdDAMd were localized to chromosomes 16 and 8, respectively. Based on these observations, we infer that MdDAMa and MdDAMc acted in a dominant fashion on each locus and were correlated with the period of endodormancy. [ABSTRACT FROM AUTHOR]

Main conclusion: WsMAGO2 a duplicated protein in Withania through interactions with MPF2-like proteins affects male fertility by producing fewer flowers and aborted non-viable pollens/seeds regulated by anther-specific GAATTTGTGA motif. The MAGO NASHIs are highly conserved genes that encode proteins known to be involved in RNA physiology and many other developmental processes including germ cell differentiation in animals. However, their structural and functional implications in plants as fertility function proteins remained fragmented. MAGO (shorter name of MAGO NASHI) proteins form heterodimers with MPF2-like MADS-box proteins which are recruited in calyx identity and male fertility in Solanaceous plants. Four MAGO genes namely WsMAGO1 and WsMAGO2 and TaMAGO1 and TaMAGO2 were isolated from Withania somnifera and Tubocapsicum anomalum, respectively. These genes have duplicated probably due to whole genome duplication event. Dysfunction of WsMAGO2 through double-stranded RNAi in Withania revealed suppression of RNA transcripts, non-viable pollens, fewer flowers and aborted non-viable seeds in the developing berry suggesting a role of this protein in many traits particularly male fertility. WsMAGO2 flaunted stronger yeast 2-hybrid interactions with MPF2-like proteins WSA206, WSB206 and TAB201 than other MAGO counterparts. The native transcripts of WsMAGO2 culminated in stamens and seed-bearing berries though other MAGO orthologs also exhibited expression albeit at lower level. Coding sequences of the two orthologs are highly conserved, but they differ substantially in their upstream promoter regions. Remarkably, WsMAGO2 promoter is enriched with many anther-specific cis-motifs common in fertility function genes promoters. Among them, disruption of GAATTTGTGA abolished YFP/GUS gene expression in anthers alluding towards its involvement in regulating expression of MAGO in anther. Our findings support a possible recruitment of WsMAGO2 in fertility trait in Withania. These genes have practical application in hybrid production through cytoplasmic male sterility maintenance for enhancement in crops yield. [ABSTRACT FROM AUTHOR]

The main goal of this article is to provide an overview of recent research in the area of cellulose nanomaterial production from different sources. Due to their abundance, renewability, high strength and stiffness, eco-friendliness and low weight, numerous studies have been reported on the isolation of cellulose nanomaterials from different cellulosic sources and their use in high-performance applications. This report covers an introduction to the definition of nanocellulose as well as the methods used for isolation of nanomaterials (including nanocrystals and nanofibers, CNCs and CNFs, respectively) from various sources. The web-like network structure (CNFs) can be extracted from natural sources using mechanical processes, which include high-pressure homogenization, grinding and refining treatments. Also, rod-like CNCs can be isolated from sources such as wood, plant fibers, agricultural and industrial bioresidues, tunicates and bacterial cellulose using an acid hydrolysis process. Following this, the article focuses on the characterization methods, material properties and structures. Encyclopedic characteristics of CNFs and CNCs obtained from different source materials and/or studies are also included. The current report is a comprehensive review of the literature regarding nanocellulose isolation and demonstrates the potential of cellulose nanomaterials for a wide range of high-tech applications. [ABSTRACT FROM AUTHOR]

ATP-citrate lyase (ACL, EC4.1.3.8) catalyzes citrate to oxaloacetate and acetyl-CoA in the cell cytosol, and has important roles in normal plant growth and in the biosynthesis of some secondary metabolites. We identified three ACL genes, CitACLα1, CitACLα2, and CitACLβ1, in the citrus genome database. Both CitACLα1 and CitACLα2 encode putative ACL α subunits with 82.5 % amino acid identity, whereas CitACLβ1 encodes a putative ACL β subunit. Gene structure analysis showed that CitACLα1 and CitACLα2 had 12 exons and 11 introns, and CitACLβ1 had 16 exons and 15 introns. CitACLα1 and CitACLβ1 were predominantly expressed in flower, and CitACLα2 was predominantly expressed in stem and fibrous roots. As fruits ripen, the transcript levels of CitACLα1, CitACLβ1, and/or CitACLα2 in cultivars 'Niuher' and 'Owari' increased, accompanied by significant decreases in citrate content, while their transcript levels decreased significantly in 'Egan No. 1' and 'Iyokan', although citrate content also decreased. In 'HB pummelo', in which acid content increased as fruit ripened, and in acid-free pummelo, transcript levels of CitACLα2, CitACLβ1, and/or CitACLα1 increased. Moreover, mild drought stress and ABA treatment significantly increased citrate contents in fruits. Transcript levels of the three genes were significantly reduced by mild drought stress, and the transcript level of only CitACLβ1 was significantly reduced by ABA treatment. Taken together, these data indicate that the effects of ACL on citrate use during fruit ripening depends on the cultivar, and the reduction in ACL gene expression may be attributed to citrate increases under mild drought stress or ABA treatment. [ABSTRACT FROM AUTHOR]

Kava ( Piper methysticum) is a major cash crop in the Pacific. The aim of this study was to assess genetic variation among 103 accessions of kava using SSRs and DArTs. Genetic structure was determined using clustering analyses (WPGMA) and principal coordinate analyses (PCA). Thirteen SSR primers and 75 DArT markers were found polymorphic, and the two types of markers generated similar clustering patterns. Genetic distances ranged from 0 to 0.65 with an average of 0.24 using SSRs and from 0 to 0.64 with an average of 0.24 using DArT. Eleven genotypes were identified with SSR while 28 genotypes were identified with DArT markers. By combining the two sets of markers, a total of only 30 distinct genotypes were observed. In the Vanuatu archipelago, noble cultivars originating from different islands clustered together within a very narrow genetic base despite their diversity of morphotypes. SSR and DArT fingerprints allowed the identification of kava cultivars unsuitable for consumption, so called two-days, and clearly differentiated the wild types classified as P. methysticum var. wichmannii from the cultivars as var. methysticum. Molecular data reveals that all noble cultivars evolved by the predominance of clonal selection. Although they are represented by clearly distinct morphotypes, these cultivars are genetically vulnerable and their potential to adapt to forthcoming changes is limited. These newly developed markers provide high resolution and will be useful for kava diversity analyses and quality assessment. [ABSTRACT FROM AUTHOR]

The AP2/ERF family of plant transcription factors (TFs) regulate a variety of developmental and physiological processes. Here, we report the isolation of six AP2/ERF TF family genes from Chrysanthemum nankingense. On the basis of sequence similarity, one of these belonged to the Ethylene Responsive Factor (ERF) subfamily and the other five to the Dehydration Responsive Element Binding protein (DREB) subfamily. A transient expression experiment showed that all six AP2/ERF proteins localized to the nucleus. A yeast-one hybrid assay demonstrated that CnDREB1-1, 1-2 and 1-3 all function /1741ansactivators, while CnERF1, CnDREB3-1 and 3-2 have no transcriptional activation ability. The transcription response of the six TFs in response to wounding, salinity and low temperature stress and treatment with abscisic acid (ABA), salicylic acid (SA) and jasmonic acid (JA) showed that CnERF1 was up-regulated by wounding and low temperature stress but suppressed by salinity stress. The transcription of CnDREB1-1, 1-2 and 1-3 was down-regulated by ABA and JA to varying degrees. CnDREB3-1 and 3-2 was moderately increased or decreased by wounding and SA treatment, suppressed by salinity stress and JA treatment, and enhanced by low temperature stress and ABA treatment. [ABSTRACT FROM AUTHOR]

NAC genes have been characterized in numerous plants, where they are involved in responses to biotic and abiotic stress, including low oxygen stress. High concentration of CO2 is one of the most effective treatments to remove astringency of persimmon fruit owing to the action of the accumulated anoxia metabolite acetaldehyde. In model plants, NAC genes have been identified as being responsive to low oxygen. However, the possible relationship between NAC transcription factors and persimmon astringency removal remains unexplored. In the present research, treatment with a high concentration of CO2 (95%) effectively removed astringency of "Mopan" persimmon fruit by causing decreases in soluble tannin. Acetaldehyde content increased in response to CO2 treatment concomitantly with astringency removal. Using RNA-seq and Rapid amplification of cDNA ends (RACE), six DkNAC genes were isolated and studied. Transcriptional analysis indicated DkNAC genes responded differentially to CO2 treatment; DkNAC1, DkNAC3, DkNAC5 and DkNAC6 were transiently up-regulated, DkNAC2 was abundantly expressed 3 days after treatment, while the DkNAC4 was suppressed during astringency removal. It is proposed that DkNAC1/3/5/6 could be important candidates as regulators of persimmon astringency removal and the roles of other member are also discussed. [ABSTRACT FROM AUTHOR]

Anthocyanins from mulberry fruits are used in medicine. However, little anthocyanin can be detected in other tissues and sometimes also mulberry fruits are colorless. The aim of this study was to investigate which gene or genes have the strongest correlation with the anthocyanin biosynthesis. The expression of several anthocyanin synthesis genes were determined in different tissues of two white and two purple fruit cultivars. Genes encoding dihydroflavonol reductase ( MaDFR) and anthocyanidin synthase ( MaANS) showed a high expression only in fruit tissue of purple-fruit cultivars. During the development of mulberry fruits, the anthocyanin content was well correlated with the transcripts abundance of MaDFR, MaANS, and MaCHS (encoding chalcone synthase). The skin of female mulberry flowers turns red under irradiance because of up-regulated expressions of MaCHS, MaDFR, and MaANS. These three genes may control the anthocyanin biosynthesis in mulberry and up-regulation of them may greatly increase the anthocyanin content. [ABSTRACT FROM AUTHOR]

Sugarcane streak mosaic virus (SCSMV), a member of the genus Poacevirus is an important viral pathogen affecting sugarcane production in India. The P1 gene of ten Indian isolates was sequenced and compared with previously reported SCSMV isolates. Comparative sequence analysis revealed a high level of diversity in the P1 gene (83–98% nucleotide sequence identity; 87–100% amino acid sequence identity), and the Indian SCSMV isolates were found to be the most variable (up to 9% diversity at the amino acid level). Phylogenetic tree analysis showed clustering of 17 SCSMV isolates into two groups: group I included isolates from India (except SCSMV-TPT) and Pakistan, and group II consisted of isolates from Japan, Indonesia, Thailand and SCSMV-TPT. The results obtained from phylogenetic study were further supported by the different in silico analysis viz. SNPs (single nucleotide polymorphism), INDELs (insertion and deletion) and evolutionary distance analysis. A significant proportion of recombination sites were observed at the N terminal region of P1 gene. Analysis of selection pressure indicated that the P1 gene of the Indian SCSMV isolates is under strong negative or purifying selection. It is likely that recombination identified in Indian SCSMV isolates, along with strong purifying selection, enhances the speed of elimination of deleterious mutations in the P1 gene. The evolutionary processes (recombination and selection pressure) together contributed to the observed genetic diversity and population structure of Indian SCSMV isolates. [ABSTRACT FROM AUTHOR]

Isolate PF23 selected from among 110 fluorescent pseudomonads, identified as Pseudomonas aeruginosa, displayed salinity tolerance and exopolysaccharides (EPS) production up to 2,000 mM NaCl concentration. EPS-defective mutant PF23 of the isolate showed 86 % reduction in EPS production in comparison with wild strain. Defect in EPS production brought loss in salt tolerance capability. Purified EPS obtained from PF23 displayed multiple roles. At low concentration EPS functioned as biocontrol agent, at high concentration EPS behaved as osmoprotective or stress ameliorating metabolite and when introduced in saline soil, served as a plant growth promotor along with seed biopriming agent. Both in planta and in vivo studies were performed taking sunflower as a test crop and it was observed that PF23 showed plant growth promotion and significant biocontrol potential against dreadful phytopathogen Macrophomina phaseolina (under saline conditions). The mutant PF23 was ineffective under saline conditions both in growth enhancement as well as in disease suppression. The study reports a potent strain, Pseudomonas aeruginosa PF23, capable of enhancing production of sunflower crop in semiarid regions and minimizing the incidence of charcoal rot disease in sunflower. [ABSTRACT FROM AUTHOR]

To explore the impact of gene polymorphism of human cytomegalovirus (HCMV) on virus virulence, the full-length UL144 gene and partial sequence of glycoprotein B ( UL55) gene were sequenced and analyzed for 23 clinical strains of HCMV isolated from urine samples of pediatric patients with congenital or postnatal HCMV infection. Among the 23 isolates, 13 (57 %) were UL144 genotype 1A, 3(13 %) were UL144 genotypes 2 and 7(30 %) were UL144 genotype 3; geographic differences in genotype distribution were found for both UL144 and gB gene. No UL144 genotypes 1B and 1C were found in this study while these two genotypes were common in HCMV strains isolated in the US. Our results also demonstrated that for all clinical strains of gB genotypes I, III and UL144 genotypes 1A, 2, and 3 found in this study, mother-to-fetus vertical transmission was possible. [ABSTRACT FROM AUTHOR]