18 results on '"Patricia Trevisan"'
Search Results
2. P743: Uncovering hidden complex structural mechanisms: Conventional karyotype as a complement to chromosomal microarray
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Katherine Haines, Deborah Hazard, Billie Carstens, Patricia Trevisan, Peter Brzeskiewicz, Thomas Gilfillan, Hala Nijmeh, Andrea Cortes Fernandez, Chandra Perez-Gill, Mikayla Stoecker, Aaina Kochhar, and Mary Haag
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Genetics ,QH426-470 ,Medicine - Published
- 2024
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3. Supplementary Figure legends from Sarcomatoid Renal Cell Carcinoma Has a Distinct Molecular Pathogenesis, Driver Mutation Profile, and Transcriptional Landscape
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Kanishka Sircar, Ken Chen, Kenna Shaw, Gordon Mills, Ignacio Wistuba, Bogdan Czerniak, Marileila Varella-Garcia, Keith Baggerly, Federico Monzon, Christopher Wood, Nizar Tannir, Pheroze Tamboli, Jaime Rodriguez Canales, Chi-Wan Chow, Eric Jonasch, Patricia Trevisan, Fumi Kawakami, Aron Joon, Chad Creighton, Jose Karam, Bo Peng, Tae Beom Kim, and Zixing Wang
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Figure legends for Figures S1-S10
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- 2023
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4. Supplementary Methods from Sarcomatoid Renal Cell Carcinoma Has a Distinct Molecular Pathogenesis, Driver Mutation Profile, and Transcriptional Landscape
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Kanishka Sircar, Ken Chen, Kenna Shaw, Gordon Mills, Ignacio Wistuba, Bogdan Czerniak, Marileila Varella-Garcia, Keith Baggerly, Federico Monzon, Christopher Wood, Nizar Tannir, Pheroze Tamboli, Jaime Rodriguez Canales, Chi-Wan Chow, Eric Jonasch, Patricia Trevisan, Fumi Kawakami, Aron Joon, Chad Creighton, Jose Karam, Bo Peng, Tae Beom Kim, and Zixing Wang
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Supplemental Methods 1. Exome sequencing pipeline Supplemental Methods 2. RNA seq pipeline Supplemental Methods 3. DNA methylation profiling pipeline Supplemental Methods 4. Fluorescence in situ hybridization Supplemental Methods 5. TCGA samples with possible copy neutral loss of heterozygosity in 3p21 and 3p25 regions
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- 2023
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5. Data from Sarcomatoid Renal Cell Carcinoma Has a Distinct Molecular Pathogenesis, Driver Mutation Profile, and Transcriptional Landscape
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Kanishka Sircar, Ken Chen, Kenna Shaw, Gordon Mills, Ignacio Wistuba, Bogdan Czerniak, Marileila Varella-Garcia, Keith Baggerly, Federico Monzon, Christopher Wood, Nizar Tannir, Pheroze Tamboli, Jaime Rodriguez Canales, Chi-Wan Chow, Eric Jonasch, Patricia Trevisan, Fumi Kawakami, Aron Joon, Chad Creighton, Jose Karam, Bo Peng, Tae Beom Kim, and Zixing Wang
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Purpose: Sarcomatoid renal cell carcinoma (SRCC) ranks among the most aggressive clinicopathologic phenotypes of RCC. However, the paucity of high-quality, genome-wide molecular examinations of SRCC has hindered our understanding of this entity.Experimental Design: We interrogated the mutational, copy number, and transcriptional characteristics of SRCC and compared these data with those of nonsarcomatoid RCC (RCC). We evaluated whole-exome sequencing, single-nucleotide polymorphism, and RNA sequencing data from patients with SRCC (n = 65) and RCC (n = 598) across different parent RCC subtypes, including clear-cell RCC, papillary RCC, and chromophobe RCC subtypes.Results: SRCC was molecularly discrete from RCC and clustered according to its parent RCC subtype, though with upregulation of TGFβ signaling across all subtypes. The epithelioid (E-) and spindled (S-) histologic components of SRCC did not show differences in mutational load among cancer-related genes despite a higher mutational burden in S-. Notably, sarcomatoid clear-cell RCC (SccRCC) showed significantly fewer deletions at 3p21-25, a lower rate of two-hit loss for VHL and PBRM1, and more mutations in PTEN, TP53, and RELN compared with ccRCC. A two-hit loss involving VHL predicted for ccRCC and a better prognosis, whereas mutations in PTEN, TP53, or RELN predicted for SccRCC and worse prognosis.Conclusions: SRCC segregates by parent subtype, and SccRCC has a fundamentally different early molecular pathogenesis, usually lacking the classic 3p21-25 deletion and showing distinctive mutational and transcriptional profiles. These features prompt a more precise molecular classification of RCC, with diagnostic, prognostic, and therapeutic implications. Clin Cancer Res; 23(21); 6686–96. ©2017 AACR.See related commentary by Bergerot et al., p. 6381
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- 2023
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6. Figures S1-S10 from Sarcomatoid Renal Cell Carcinoma Has a Distinct Molecular Pathogenesis, Driver Mutation Profile, and Transcriptional Landscape
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Kanishka Sircar, Ken Chen, Kenna Shaw, Gordon Mills, Ignacio Wistuba, Bogdan Czerniak, Marileila Varella-Garcia, Keith Baggerly, Federico Monzon, Christopher Wood, Nizar Tannir, Pheroze Tamboli, Jaime Rodriguez Canales, Chi-Wan Chow, Eric Jonasch, Patricia Trevisan, Fumi Kawakami, Aron Joon, Chad Creighton, Jose Karam, Bo Peng, Tae Beom Kim, and Zixing Wang
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Figure S1. Biphasic histologic components of sarcomatoid renal cell carcinoma. The macrodissected paired epithelioid or carcinomatous (E) and spindled or sarcomatoid (S) components of clear cell RCC (upper panel), Papillary RCC (middle panel), and chromophobe RCC (lower panel). H&E stain, scale bar 200 ï�m. Figure S2. Sarcomatoid ccRCC shows fewer VHL deletions. (A) Clear cell RCC (H&E stain, scale bar 100 µm) with (B) Fluorescence in situ hybridization (FISH) image showing paired CEN3q signals (green) and a single VHL signal (red). (C) Sarcomatoid ccRCC (H&E stain, scale bar 100 µm) with (D) FISH image showing balanced CEN3q (green) and VHL (red) signals. (E) Box plot showing significantly higher VHL/3q ratios associated with sarcomatoid histology, P
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- 2023
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7. Supplementary Tables S7 from Sarcomatoid Renal Cell Carcinoma Has a Distinct Molecular Pathogenesis, Driver Mutation Profile, and Transcriptional Landscape
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Kanishka Sircar, Ken Chen, Kenna Shaw, Gordon Mills, Ignacio Wistuba, Bogdan Czerniak, Marileila Varella-Garcia, Keith Baggerly, Federico Monzon, Christopher Wood, Nizar Tannir, Pheroze Tamboli, Jaime Rodriguez Canales, Chi-Wan Chow, Eric Jonasch, Patricia Trevisan, Fumi Kawakami, Aron Joon, Chad Creighton, Jose Karam, Bo Peng, Tae Beom Kim, and Zixing Wang
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Table S7a. Ingenuity Pathway Analysis of SRCC vs RCC Table S7b. Ingenuity Pathway Analysis of SccRCC vs advanced stage ccRCC Table S7c. Ingenuity Pathway Analysis of E vs S components of ccRCC
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- 2023
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8. Volitional and non-volitional strength, synchrony and inspiratory force reserve in fibrosing interstitial lung disease at rest and during exercise
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Patricia Trevisan, Thomas Jaeger, Carlos Roberto Ribeiro de Carvalho, André Luis Pereira de Albuquerque, Pedro Caruso, Marcelo Macchione, Letícia Zumpano Cardenas, Pauliane Vieira Santana, Ozires Ramos, and Jeferson George Ferreira
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medicine.medical_specialty ,Lung ,medicine.diagnostic_test ,business.industry ,Accessory muscle ,Interstitial lung disease ,Exercise intolerance ,Electromyography ,medicine.disease ,Physical medicine and rehabilitation ,medicine.anatomical_structure ,Internal medicine ,medicine ,Respiratory muscle ,Cardiology ,medicine.symptom ,Respiratory system ,business ,Rest (music) - Abstract
Background: Exercise intolerance is the hallmark of fibrosing interstitial lung diseases (FILD), but the role played by the respiratory muscles is controversial. Objective: To measure the inspiratory and expiratory muscle strength, chest wall synchrony and inspiratory endurance in FILD patients. Methods: For 16 FILD patients and 14 healthies we measured, at rest, volitional and non-volitional inspiratory and expiratory strength. During a maximal cycle test, we measured inspiratory and expiratory accessory muscle activity (electromyography), chest wall synchrony (inductive pletysmography) and inspiratory endurance using the tension-time index (TTi) with gastric and esophageal catheters. Results: The volitional and non-volitional inspiratory and expiratory strength were similar between the groups. From rest to strenuous exercise, inspiratory and expiratory muscles were significantly more activated in patients. Patients and volunteers presented similar chest wall synchrony. Patients presented higher inspiratory TTi at rest and during exercise (p
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- 2015
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9. Congenital heart disease and chromossomopathies detected by the karyotype
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Patrícia Trevisan, Rafael Fabiano M. Rosa, Dayane Bohn Koshiyama, Tatiana Diehl Zen, Giorgio Adriano Paskulin, and Paulo Ricardo G. Zen
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cardiopatías congénitas ,cariotipo ,síndrome de Down ,trisomía ,anomalías cromosómicas ,Pediatrics ,RJ1-570 - Abstract
OBJECTIVE: To review the relationship between congenital heart defects and chromosomal abnormalities detected by the karyotype.DATA SOURCES: Scientific articles were searched in MEDLINE database, using the descriptors "karyotype" OR "chromosomal" OR "chromosome" AND "heart defects, congenital". The research was limited to articles published in English from 1980 on.DATA SYNTHESIS: Congenital heart disease is characterized by an etiologically heterogeneous and not well understood group of lesions. Several researchers have evaluated the presence of chromosomal abnormalities detected by the karyotype in patients with congenital heart disease. However, most of the articles were retrospective studies developed in Europe and only some of the studied patients had a karyotype exam. In this review, only one study was conducted in Latin America, in Brazil. It is known that chromosomal abnormalities are frequent, being present in about one in every ten patients with congenital heart disease. Among the karyotype alterations in these patients, the most important is the trisomy 21 (Down syndrome). These patients often have associated extra-cardiac malformations, with a higher risk of morbidity and mortality, which makes heart surgery even more risky.CONCLUSIONS: Despite all the progress made in recent decades in the field of cytogenetic, the karyotype remains an essential tool in order to evaluate patients with congenital heart disease. The detailed dysmorphological physical examination is of great importance to indicate the need of a karyotype.
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- 2014
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10. Unroofed coronary sinus in a patient with neurofibromatosis type 1
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Luciano Pereira Bender, Maria Rita F. Meyer, Rafael Fabiano M. Rosa, Rosana Cardoso M. Rosa, Patrícia Trevisan, and Paulo Ricardo G. Zen
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neurofibromatosis 1 ,manchas café con leche ,cardiopatías congénitas ,seno coronario/anormalidades ,comunicación interatrial ,Pediatrics ,RJ1-570 - Abstract
OBJECTIVE: To report the uncommon association between neurofibromatosis type 1 (NF1) and unroofed coronary sinus. CASE DESCRIPTION: Girl with four years and six months old who was hospitalized for heart surgery. The cardiac problem was discovered at four months of life. On physical examination, the patient presented several café-au-lait spots in the trunk and the limbs and freckling of the axillary and groin regions. Her father had similar skin findings, suggesting the NF1 diagnosis. The cardiac evaluation by echocardiography disclosed an atrial septal defect of unroofed coronary sinus type. This cardiac finding was confirmed at surgery. The procedure consisted of the atrial septal defect repair with autologous pericardium. COMMENTS: NF1 is a common autosomal dominant disorder caused by mutations in the NF1 gene. Among the NF1 findings, congenital heart defects are considered unusual. In the literature review, there was no association between NF1 and unroofed coronary sinus, which is a rare cardiac malformation, characterized by a communication between the coronary sinus and the left atrium, resultant from the partial or total absence of the coronary sinus roof. It represents less than 1% of atrial septal defect cases. More reports are important to determine if this association is real or merely casual, since NF1 is a common condition.
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- 2013
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11. Gestational, perinatal and family findings of patients with Patau syndrome
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Rafael Fabiano M. Rosa, Melina Vaz Sarmento, Janaina Borges Polli, Daniela de Paoli Groff, Patrícia Petry, Vinícius Freitas de Mattos, Rosana Cardoso M. Rosa, Patrícia Trevisan, and Paulo Ricardo G. Zen
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cromosomas humanos par 13 ,aberraciones cromosómicas ,prematuro ,índice de Apgar ,diagnóstico pre-natal ,pronóstico ,Pediatrics ,RJ1-570 - Abstract
OBJECTIVE: To describe gestational, perinatal and family findings of patients with Patau syndrome (PS). METHODS: The study enrolled patients with PS consecutively evaluated during 38 years in a Clinical Genetics Service of a pediatric referral hospital in Southern Brazil. The clinical data and the results of cytogenetic analysis were collected from the medical records. For statistical analysis, the two-tailed Fisher's exact test and the chi-square test with Yates' correction were used, being significant p
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- 2013
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12. Treinamento muscular melhora o volume corrente e a capacidade vital no pós-operatório de revascularização do miocárdio Inspiratory muscle training improves tidal volume and vital capacity after CABG surgery
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Gabriela Bertolini Matheus, Desanka Dragosavac, Patrícia Trevisan, Cledycion Eloy da Costa, Maurício Marson Lopes, and Gustavo Calado de Aguiar Ribeiro
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Modalidades de fisioterapia ,Exercícios respiratórios ,Revascularização miocárdica ,Physical therapy modalities ,Breathing exercises ,Myocardial revascularization ,Surgery ,RD1-811 ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
OBJETIVO: Avaliar a função pulmonar e força da musculatura respiratória no período pós-operatório e verificar o efeito do treinamento muscular inspiratório sobre as medidas de desempenho da musculatura respiratória em pacientes submetidos à revascularização do miocárdio. MÉTODOS: Estudo randomizado, incluindo 47 pacientes submetidos à revascularização do miocárdio com circulação extracorpórea. Os pacientes foram divididos em grupo controle (GC), 24 pacientes, e grupo estudo (GE) 23 pacientes, com idade média de 66,33 ± 10,20 anos e 61,83 ± 8,61 anos, respectivamente. O GE foi submetido à fisioterapia convencional e ao treinamento muscular inspiratório com threshold® IMT e o GC à fisioterapia convencional. Foram comparadas as pressões respiratórias máximas (Pimáx e Pemáx), volume corrente (VC), capacidade vital (CV) e pico de fluxo expiratório (Peak Flow) no pré-operatório (Pré-OP), 1º e 3º dias de pós-operatório (PO1) e (PO3). RESULTADOS: Observou-se redução significativa em todas as variáveis mensuradas no PO1, quando comparadas ao pré-operatório, nos dois grupos estudados, Pimáx (POBJECTIVE: To evaluate lung function and respiratory muscle strength in the postoperative period and investigate the effect of inspiratory muscle training on measures of respiratory muscle performance in patients undergoing coronary artery bypass grafting. METHODS: A randomized study with 47 patients undergoing coronary artery bypass grafting with cardiopulmonary bypass. They were divided into study group (SG) 23 patients and control group (CG) 24 patients, mean age 61.83 ± 8.61 and 66.33 ± 10.20 years, EuroSCORE SG 0.71 ± 0.0018 and CG 0.76 ± 0.0029, respectively. The study group underwent physical therapy and inspiratory muscle training with threshold IMT® and CG underwent conventional physiotherapy. We compared the maximal respiratory pressures (MIP and MEP), tidal volume (TV), vital capacity (VC) and peak expiratory flow (peak flow) preoperatively (Pre-OP), 1st (PO1) and 3rd (PO3) postoperative day. RESULTS: There was a significant reduction in all variables measured on PO1 compared to preoperative values in both groups, MIP (P
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- 2012
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13. Report of a patient with fragile X syndrome unexpectedly identified by karyotype analysis
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Maiara A. Floriani, Marcelo R. Vilas Boas, Rafael Fabiano M. Rosa, Patrícia Trevisan, Luiza Emy Dorfman, Rosana C. M. Rosa, Tatiana D. Zen, and Paulo Ricardo G. Zen
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karyotype ,fragile X syndrome ,intellectual disability ,chromosomal fragile sites ,Pathology ,RB1-214 - Abstract
ABSTRACT Fragile X syndrome is considered the main known cause of inherited learning disabilities and it is characterized by mutations in the FMR1 gene. Our aim was to report an unexpected detection of a patient with fragile X syndrome by GTG-Banding karyotype analysis (G-bands after trypsin and Giemsa). The karyotype analysis identified Xq27.3 fragility in 17% of the metaphases analyzed and in 54% when using TC 199, consistent with the cytogenetic diagnosis of the syndrome. This case was the sole one to present the fra(X) tests in the high-resolution karyotype analysis in our care service, contributing to future diagnoses of patients with history of developmental delay.
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- 2017
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14. Anormalidades cromossômicas entre pacientes com cardiopatia congênita
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Patrícia Trevisan, Tatiana Diehl Zen, Rafael Fabiano Machado Rosa, Juliane Nascimento da Silva, Dayane Bohn Koshiyama, Giorgio Adriano Paskulin, and Paulo Ricardo Gazzola Zen
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Cardiopatias Congênitas ,Aberrações Cromossônicas ,Sindrome de Down ,Cariótipo ,Metáfase ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
FUNDAMENTO: As anormalidades cromossômicas (ACs) representam importante causa de cardiopatia congênita (CC). OBJETIVO: Determinar a frequência, os tipos e as características clínicas de ACs identificadas em uma amostra prospectiva e consecutiva de pacientes com CC. MÉTODO: Nossa amostra foi composta por pacientes com CC avaliados em sua primeira hospitalização em uma unidade cardíaca de tratamento intensivo de um hospital pediátrico de referência do sul do Brasil. Todos os pacientes foram submetidos à avaliação clínica e citogenética, através do cariótipo de alta resolução. Os defeitos cardíacos foram classificados segundo Botto e cols. Na análise estatística utilizou-se o qui-quadrado, o teste exato de Fisher e odds ratio (p < 0,05). RESULTADOS: Nossa amostra foi composta de 298 pacientes, 53,4% do sexo masculino, com idades variando de um dia a 14 anos. Anormalidades cromossômicas foram observadas em 50 pacientes (16,8%), sendo que 49 deles eram sindrômicos. Quanto às ACs, 44 delas (88%) eram numéricas (40 pacientes com +21, dois com +18, um com triplo X e um com 45,X) e seis (12%) estruturais [dois pacientes com der(14;21), +21, um com i(21q), um com dup(17p), um com del(6p) e um com add(18p)]. O grupo de CCs mais associado a ACs foi o do defeito de septo atrioventricular. CONCLUSÕES: ACs detectadas pelo cariótipo são frequentes entre pacientes com CC. Assim, os profissionais - especialmente aqueles que trabalham em serviços de cardiologia pediátrica - devem estar cientes das implicações que a realização do cariótipo pode trazer, tanto para o diagnóstico, tratamento e prognóstico desses pacientes como para o seu aconselhamento genético.
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- 2013
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15. 45,X/46,XY mosaicism: report on 14 patients from a Brazilian hospital. A retrospective study
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Rafael Fabiano Machado Rosa, Willy Francisco Bartel D'Ecclesiis, Raquel Papandreus Dibbi, Rosana Cardoso Manique Rosa, Patrícia Trevisan, Carla Graziadio, Giorgio Adriano Paskulin, and Paulo Ricardo Gazzola Zen
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Genitalia ,Mosaicism ,Turner syndrome ,Azoospermia ,Neoplasms ,Medicine - Abstract
CONTEXT AND OBJECTIVE: 45,X/46,XY mosaicism, or mixed gonadal dysgenesis, is considered to be a rare disorder of sex development. The aim of our study was to investigate the clinical and cytogenetic characteristics of patients with this mosaicism.DESIGN AND SETTING: A retrospective study in a referral hospital in southern Brazil.METHODS: Our sample consisted of patients diagnosed at the clinical genetics service of a referral hospital in southern Brazil, from 1975 to 2012. Clinical and cytogenetic data were collected from the medical records.RESULTS: Fourteen patients were included in the sample, with ages at the first evaluation ranging from 2 days to 38 years. Nine of them had female sex of rearing and five, male. Regarding the external genitalia, most were ambiguous (n = 10). One patient presented male phenotype and was treated for a history of azoospermia, while three patients presented female phenotype, of whom two had findings of Turner syndrome and one presented secondary amenorrhea alone. Some findings of Turner syndrome were observed even among patients with ambiguous genitalia. None presented gonadal malignancy. One patient underwent surgical correction for genital ambiguity and subsequent exchange of sex of rearing. Regarding cytogenetics, we did not observe any direct correlation between percentages of cell lines and phenotype.CONCLUSIONS: 45,X/46,XY mosaicism can present with a wide variety of phenotypes resulting from the involvement of different aspects of the individual. All these observations have important implications for early recognition of these patients and their appropriate management.
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16. Clinical and cytogenetic features of a Brazilian sample of patients with phenotype of oculo-auriculo-vertebral spectrum: a cross-sectional study
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Alessandra Pawelec da Silva, Rafael Fabiano Machado Rosa, Patrícia Trevisan, Juliana Cavalheiro Dorneles, Camila Saporiti Mesquita, Vinicius Freitas de Mattos, Giorgio Adriano Paskulin, and Paulo Ricardo Gazzola Zen
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Goldenhar syndrome ,Karyotype ,In situ hybridization, fluorescence ,Fanconi anemia ,Mosaicism ,Twinning, monozygotic ,Medicine - Abstract
CONTEXT AND OBJECTIVE: Oculo-auriculo-vertebral spectrum (OAVS) is considered to be a defect of embryogenesis involving structures originating from the first branchial arches. Our objective was to describe the clinical and cytogenetic findings from a sample of patients with the phenotype of OAVS.DESIGN AND SETTING: Cross-sectional study in a referral hospital in southern Brazil.METHODS: The sample consisted of 23 patients who presented clinical findings in at least two of these four areas: orocraniofacial, ocular, auricular and vertebral. The patients underwent a clinical protocol and cytogenetic evaluation through high-resolution karyotyping, fluorescence in situ hybridization for 5p and 22q11 microdeletions and investigation of chromosomal instability for Fanconi anemia.RESULTS: Cytogenetic abnormalities were observed in three cases (13%) and consisted of: 47,XX,+mar; mos 47,XX,+mar/46,XX; and 46,XX,t(6;10)(q13; q24). We observed cases of OAVS with histories of gestational exposition to fluoxetine, retinoic acid and crack. One of our patients was a discordant monozygotic twin who had shown asymmetrical growth restriction during pregnancy. Our patients with OAVS were characterized by a broad clinical spectrum and some presented atypical findings such as lower-limb reduction defect and a tumor in the right arm, suggestive of hemangioma/lymphangioma.CONCLUSIONS: We found a wide range of clinical characteristics among the patients with OAVS. Different chromosomal abnormalities and gestational expositions were also observed. Thus, our findings highlight the heterogeneity of the etiology of OAVS and the importance of these factors in the clinical and cytogenetic evaluation of these patients.
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17. Screening for 22q11 deletion syndrome among patients with congenital heart defects
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Rafael Fabiano Machado Rosa, Rosana Cardoso Manique Rosa, Patrícia Trevisan, Carla Graziadio, Marileila Varella-Garcia, Giorgio Adriano Paskulin, and Paulo Ricardo Gazzola Zen
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Medicine - Full Text
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18. Cytogenetic profile of patients with Down syndrome in southern Brazil
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Patrícia Trevisan, Felipe Nora de Moraes, Vinicius Freitas de Mattos, Carla Graziadio, Rafael Fabiano Machado Rosa, Giorgio Adriano Paskulin, and Paulo Ricardo Gazzola Zen
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Medicine - Full Text
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