1. Differential Transcriptomic Signatures of Small Airway Cell Cultures Derived from IPF and COVID-19-Induced Exacerbation of Interstitial Lung Disease
- Author
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Katie Uhl, Shreya Paithankar, Dmitry Leshchiner, Tara E. Jager, Mohamed Abdelgied, Bhavna Dixit, Raya Marashdeh, Dewen Luo-Li, Kaylie Tripp, Angela M. Peraino, Maximiliano Tamae Kakazu, Cameron Lawson, Dave W. Chesla, Ningzhi Luo-Li, Edward T. Murphy, Jeremy Prokop, Bin Chen, Reda E. Girgis, and Xiaopeng Li
- Subjects
interstitial lung disease ,ILD ,idiopathic pulmonary fibrosis ,IPF ,COVID-19 ,coronavirus ,Cytology ,QH573-671 - Abstract
Idiopathic pulmonary fibrosis (IPF) is a pathological condition wherein lung injury precipitates the deposition of scar tissue, ultimately leading to a decline in pulmonary function. Existing research indicates a notable exacerbation in the clinical prognosis of IPF patients following infection with COVID-19. This investigation employed bulk RNA-sequencing methodologies to describe the transcriptomic profiles of small airway cell cultures derived from IPF and post-COVID fibrosis patients. Differential gene expression analysis unveiled heightened activation of pathways associated with microtubule assembly and interferon signaling in IPF cell cultures. Conversely, post-COVID fibrosis cell cultures exhibited distinctive characteristics, including the upregulation of pathways linked to extracellular matrix remodeling, immune system response, and TGF-β1 signaling. Notably, BMP signaling levels were elevated in cell cultures derived from IPF patients compared to non-IPF control and post-COVID fibrosis samples. These findings underscore the molecular distinctions between IPF and post-COVID fibrosis, particularly in the context of signaling pathways associated with each condition. A better understanding of the underlying molecular mechanisms holds the promise of identifying potential therapeutic targets for future interventions in these diseases.
- Published
- 2023
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