56 results on '"Sullivan RP"'
Search Results
2. Genetic and Epigenetic Regulation in Lingo-1: Effects on Cognitive Function and White Matter Microstructure in a Case-Control Study for Schizophrenia
- Author
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Andrews, JL, Zalesky, A, Nair, S, Sullivan, RP, Green, MJ, Pantelis, C, Newell, KA, Fernandez, F, Andrews, JL, Zalesky, A, Nair, S, Sullivan, RP, Green, MJ, Pantelis, C, Newell, KA, and Fernandez, F
- Abstract
Leucine-rich repeat and immunoglobulin domain-containing protein (Lingo-1) plays a vital role in a large number of neuronal processes underlying learning and memory, which are known to be disrupted in schizophrenia. However, Lingo-1 has never been examined in the context of schizophrenia. The genetic association of a single-nucleotide polymorphism (SNP, rs3144) and methylation (CpG sites) in the Lingo-1 3'-UTR region was examined, with the testing of cognitive dysfunction and white matter (WM) integrity in a schizophrenia case-control cohort (n = 268/group). A large subset of subjects (97 control and 161 schizophrenia subjects) underwent structural magnetic resonance imaging (MRI) brain scans to assess WM integrity. Frequency of the rs3144 minor allele was overrepresented in the schizophrenia population (p = 0.03), with an odds ratio of 1.39 (95% CI 1.016-1.901). CpG sites surrounding rs3144 were hypermethylated in the control population (p = 0.032) compared to the schizophrenia group. rs3144 genotype was predictive of membership to a subclass of schizophrenia subjects with generalized cognitive deficits (p < 0.05), in addition to having associations with WM integrity (p = 0.018). This is the first study reporting a potential implication of genetic and epigenetic risk factors in Lingo-1 in schizophrenia. Both of these genetic and epigenetic alterations may also have associations with cognitive dysfunction and WM integrity in the context of the schizophrenia pathophysiology.
- Published
- 2023
3. Preventing early childhood transmission of hepatitis B in remote aboriginal communities in Northern Australia
- Author
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Sullivan, RP, Davies, J, Binks, P, McKinnon, M, Dhurrkay, RG, Hosking, K, Bukulatjpi, SM, Locarnini, S, Littlejohn, M, Jackson, K, Tong, SYC, Davis, JS, Sullivan, RP, Davies, J, Binks, P, McKinnon, M, Dhurrkay, RG, Hosking, K, Bukulatjpi, SM, Locarnini, S, Littlejohn, M, Jackson, K, Tong, SYC, and Davis, JS
- Abstract
BACKGROUND: Chronic hepatitis B is a public health concern in Aboriginal communities in the Northern Territory of Australia with prevalence almost four times the non-Aboriginal population. Infection is suspected to mainly occur in early life, however, the mode of transmission and vaccine effectiveness is not known in this population. WHO has set a target for hepatitis B elimination by 2030; elimination in this disproportionately affected population in Australia will require understanding of the modes of transmission and vaccine effectiveness. METHODS: We conducted the study at four very remote Aboriginal communities. We approached mothers who had chronic hepatitis B and had given birth between 1988 and 2013 for consent. We obtained hepatitis B serology, immunisation and birth details from the medical record. If both mother and child had hepatitis B viral DNA detected, we performed viral whole genome sequencing. RESULTS: We approached 45 women for consent, of whom 23 agreed to participate. We included 20 mothers and 38 of their children. Of the 20 included mothers, 5 (25%) had children who were hepatitis B immune by exposure and 3 (15%) had children with evidence of chronic hepatitis B infection at the time of assessment. Hepatitis B immunoglobulin (HBIg) had been given at birth in 29/38 (76.3, 95% CI 59.8-88.6) children, and 26 children (68.4, 95% CI 51.3-82.5) were fully vaccinated. Of the 3 children who had chronic hepatitis B, all had received HBIg at birth and two were fully vaccinated. Of the 5 who were immune by exposure, 4 had received HBIg at birth and one was fully vaccinated. Whole genome sequencing revealed one episode of definite mother to child transmission. There was also one definite case of horizontal transmission. CONCLUSIONS: Chronic hepatitis B in this context is a sensitive issue, with a high proportion of women refusing consent. Although uncommon, there is ongoing transmission of hepatitis B to Aboriginal children in remote northern Australia de
- Published
- 2022
4. Point of care and oral fluid hepatitis B testing in remote Indigenous communities of northern Australia
- Author
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Sullivan, RP, Davies, J, Binks, P, Dhurrkay, RG, Gurruwiwi, GG, Bukulatjpi, SM, McKinnon, M, Hosking, K, Littlejohn, M, Jackson, K, Locarnini, S, Davis, JS, Tong, SYC, Sullivan, RP, Davies, J, Binks, P, Dhurrkay, RG, Gurruwiwi, GG, Bukulatjpi, SM, McKinnon, M, Hosking, K, Littlejohn, M, Jackson, K, Locarnini, S, Davis, JS, and Tong, SYC
- Abstract
Many Indigenous Australians in northern Australia living with chronic hepatitis B are unaware of their diagnosis due to low screening rates. A venous blood point of care test (POCT) or oral fluid laboratory test could improve testing uptake in this region. The purpose of this study was to assess the field performance of venous blood POCT and laboratory performance of an oral fluid hepatitis B surface antigen (HBsAg) test in Indigenous individuals living in remote northern Australian communities. The study was conducted with four very remote communities in the tropical north of Australia's Northern Territory. Community research workers collected venous blood and oral fluid samples. We performed the venous blood POCT for HBsAg in the field. We assessed the venous blood and oral fluid specimens for the presence of HBsAg using standard laboratory assays. We calculated the sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV) of the POCT and oral fluid test, using serum laboratory detection of HBsAg as the gold standard. From 215 enrolled participants, 155 POCT and 197 oral fluid tests had corresponding serum HBsAg results. The POCT had a sensitivity of 91.7% and specificity of 100%. Based on a population prevalence of 6%, the PPV was 100% and NPV was 99.5%. The oral fluid test had a sensitivity of 56.8%, specificity of 98.1%, PPV of 97.3% and NPV of 65.9%. The venous blood POCT has excellent test characteristics and could be used to identify individuals with chronic HBV infection in high prevalence communities with limited access to health care. Oral fluid performance was suboptimal.
- Published
- 2020
5. Recognize risk factors to prevent patient falls.
- Author
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Sullivan RP and Badros KK
- Abstract
Nurse leaders can reduce the rate of falls and injuries resulting from falls by instituting a fall prevention program. This article describes how one hospital developed a successful program. [ABSTRACT FROM AUTHOR]
- Published
- 1999
6. MicroRNA-146a deficiency enhances host protection against murine cytomegalovirus.
- Author
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Wong P, Leong JW, Sohn H, Chang L, Keppel CR, Neal CC, Cubitt CC, Yao T, Keppel MP, Tran J, Burdi A, Hwang K, Fogel LA, Schappe T, Marsala L, Berrien-Elliott MM, Wagner JA, Schneider SE, Sullivan RP, Pingel JT, Cooper MA, French AR, and Fehniger TA
- Subjects
- Animals, Mice, STAT1 Transcription Factor genetics, STAT1 Transcription Factor deficiency, STAT1 Transcription Factor metabolism, Mice, Inbred C57BL, Immunity, Innate, T-Lymphocytes immunology, MicroRNAs genetics, MicroRNAs immunology, Killer Cells, Natural immunology, Muromegalovirus immunology, Mice, Knockout, Herpesviridae Infections immunology, Herpesviridae Infections genetics
- Abstract
Natural killer (NK) cells are innate lymphoid cells that protect a host from viral infections and malignancies. MicroRNA-146a (miR-146a) is an important regulator of immune function that is highly expressed in NK cells and is further upregulated during murine cytomegalovirus (MCMV) infection. Here we utilized mice with a global targeted deletion of miR-146a to understand its impact on the innate immune responses to MCMV infection. MiR-146a
-/- mice were protected from lethal MCMV infection, which was intrinsic to the hematopoietic compartment based on bone marrow chimera experiments. NK cell depletion abrogated this protection, implicating NK cells as critical for the miR-146a-/- protection from MCMV. Surprisingly, NK cells from miR-146a-deficient mice were largely similar to control NK cells with respect to development, maturation, trafficking, and effector functions. However, miR-146a-/- mice had increased NK cell numbers and frequency of the most mature Stage IV (CD27- CD11b+ ) NK cells in the liver at baseline, enhanced STAT1 phosphorylation, and increased selective expansion of Ly49H+ NK cells and T cells during MCMV infection. This study demonstrates a critical role for miR-146a in the host response to MCMV, arising from mechanisms that include increased NK cell numbers and early T-cell expansion., (© 2024 Wiley‐VCH GmbH.)- Published
- 2024
- Full Text
- View/download PDF
7. "They feel shame sometime, but that is why we need to talk to them…we need to tell them how important it is not to feel shame": Hepatitis B related shame and improving hepatitis B care in Aboriginal and Torres Strait Islander communities in the Top End of the Northern Territory, according to the Aboriginal health workforce.
- Author
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Sullivan RP, Bukulatjpi SM, Binks P, Hosking K, Nundhirribala P, Vintour-Cesar E, McKinnon M, Gurruwiwi G, Green A, Davis JS, and Davies J
- Abstract
Background: The Aboriginal health workforce has unique insights given their healthcare experience and interactions with their communities. The aims of this project were to explore their perceptions of hepatitis B related shame and ways to improve hepatitis B care in Aboriginal and Torres Strait Islander communities of Northern Territory's Top End, Australia., Methods: We conducted a qualitative study with guidance from the Menzies School of Health Research Infectious Diseases Indigenous Reference Group. The Aboriginal health workforce was asked to participate in semi-structured interviews exploring hepatitis B related shame and ways to improve hepatitis B care. Qualitative data were evaluated using reflexive thematic analysis., Results: There were fifteen semi-structured interviews with participants representing eight different communities. The experience of shame was reported by the Aboriginal health workforce to be common for individuals diagnosed with hepatitis B and comprised feelings of fear related to transmitting the virus, to being isolated, and to being at fault. Shame was mediated by poor health literacy, communication, the lack of culturally safe spaces and was perpetuated by intersecting stereotypes. Improvements in care can be achieved by utilising the Aboriginal health workforce more effectively, improving communication and the availability of culturally safe spaces, emphasising community connection, and reframing hepatitis B as a chronic condition., Conclusions: Hepatitis B related shame was an important issue and impactful in Aboriginal and Torres Strait Islander communities in the Top End of the Northern Territory. There were many facets to shame in these communities and it was mediated by several factors. The Aboriginal health workforce has emphasised several pathways to improve care and diminish the impact of shame, such as improving communication and the availability of culturally safe spaces., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
8. An evaluation and refinement of the "Hep B Story" app, tailored to meet the community's cultural needs.
- Author
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Binks P, Venkatesan S, Everitt A, Gurruwiwi GG, Dhurrkay RG, Bukulatjpi SM, Ross C, Alley T, Hosking K, Vintour-Cesar E, McKinnon M, Sullivan RP, Davis JS, Hefler M, and Davies J
- Subjects
- Adult, Female, Humans, Male, Middle Aged, Cultural Competency, Interviews as Topic, Northern Territory, Australian Aboriginal and Torres Strait Islander Peoples, Community-Based Participatory Research, Focus Groups, Hepatitis B ethnology, Hepatitis B prevention & control, Mobile Applications
- Abstract
Background: Hepatitis B is endemic amongst the Australian Aboriginal population in the Northern Territory. A participatory action research project identified the lack of culturally appropriate education tools and led to the development of the "Hep B Story" app in the Aboriginal language Yolŋu Matha. This paper describes a formal evaluation of the app's first version, which informed improvements and translation into a further ten Aboriginal languages., Methods: The evaluation employed Participatory Action Research (PAR) principles to work within Indigenous research methodologies and prioritise Indigenous knowledge to improve the app iteratively. Semi-structured interviews and focus groups were conducted across the Northern Territory with 11 different language groups. Local Community Based Researchers and Aboriginal Research team members coordinated sessions. The recorded, translated conversations were transcribed verbatim and thematically analysed using an inductive and deductive approach., Results: Between November 2018 and September 2020, 94 individuals from 11 language groups participated in 25 semi-structured interviews and 10 focus groups. All participants identified as Aboriginal. Most participants felt the app would be culturally appropriate for Aboriginal communities in the Northern Territory and improve knowledge surrounding hepatitis B. The information gathered from these interviews allowed for identifying five main themes: support for app, relationships, concept versus language, shame, and perceptions of images, along with errors that required modification., Conclusions: A "real-life" evaluation of the app was comprehensively completed using a PAR approach blended with Indigenous research methods. This evaluation allowed us to develop an updated and enhanced version of the app before creating the additional ten language versions. An iterative approach alongside strong community engagement was pivotal in ensuring the app's cultural safety and appropriateness. We recommend avoiding the use of knowledge-based evaluations in an Aboriginal setting to ensure relevant and culturally appropriate feedback is obtained., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
9. Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging.
- Author
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Renton AI, Dao TT, Johnstone T, Civier O, Sullivan RP, White DJ, Lyons P, Slade BM, Abbott DF, Amos TJ, Bollmann S, Botting A, Campbell MEJ, Chang J, Close TG, Dörig M, Eckstein K, Egan GF, Evas S, Flandin G, Garner KG, Garrido MI, Ghosh SS, Grignard M, Halchenko YO, Hannan AJ, Heinsfeld AS, Huber L, Hughes ME, Kaczmarzyk JR, Kasper L, Kuhlmann L, Lou K, Mantilla-Ramos YJ, Mattingley JB, Meier ML, Morris J, Narayanan A, Pestilli F, Puce A, Ribeiro FL, Rogasch NC, Rorden C, Schira MM, Shaw TB, Sowman PF, Spitz G, Stewart AW, Ye X, Zhu JD, Narayanan A, and Bollmann S
- Subjects
- Humans, User-Computer Interface, Reproducibility of Results, Brain diagnostic imaging, Neuroimaging methods, Software
- Abstract
Neuroimaging research requires purpose-built analysis software, which is challenging to install and may produce different results across computing environments. The community-oriented, open-source Neurodesk platform ( https://www.neurodesk.org/ ) harnesses a comprehensive and growing suite of neuroimaging software containers. Neurodesk includes a browser-accessible virtual desktop, command-line interface and computational notebook compatibility, allowing for accessible, flexible, portable and fully reproducible neuroimaging analysis on personal workstations, high-performance computers and the cloud., (© 2024. The Author(s), under exclusive licence to Springer Nature America, Inc.)
- Published
- 2024
- Full Text
- View/download PDF
10. The Stark Effect: A Tool for the Design of High-Performance Molecular Rectifiers.
- Author
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Sullivan RP, Morningstar JT, Castellanos-Trejo E, Welker ME, and Jurchescu OD
- Abstract
Molecular electronic devices offer a path to the miniaturization of electronic circuits and could potentially facilitate novel functionalities that can be embedded into the molecular structure. Given their nanoscale dimensions, device properties are strongly influenced by quantum effects, yet many of these phenomena have been largely overlooked. We investigated the mechanism responsible for current rectification in molecular diodes and found that efficient rectification is achieved by enhancing the Stark effect strength and enabling a large number of molecules to participate in transport. These findings provided insights into the operation of molecular rectifiers and guided the development of high-performance devices via the design of molecules containing polarizable aromatic rings. Our results are consistent for different molecular structures and are expected to have broad applicability to all molecular devices by answering key questions related to charge transport mechanisms in such systems.
- Published
- 2023
- Full Text
- View/download PDF
11. Genetic and Epigenetic Regulation in Lingo-1 : Effects on Cognitive Function and White Matter Microstructure in a Case-Control Study for Schizophrenia.
- Author
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Andrews JL, Zalesky A, Nair S, Sullivan RP, Green MJ, Pantelis C, Newell KA, and Fernandez F
- Subjects
- Humans, Brain metabolism, Case-Control Studies, Cognition, Magnetic Resonance Imaging, Epigenesis, Genetic, Schizophrenia diagnostic imaging, Schizophrenia genetics, Schizophrenia metabolism, White Matter pathology, Nerve Tissue Proteins genetics
- Abstract
Leucine-rich repeat and immunoglobulin domain-containing protein (Lingo-1) plays a vital role in a large number of neuronal processes underlying learning and memory, which are known to be disrupted in schizophrenia. However, Lingo-1 has never been examined in the context of schizophrenia. The genetic association of a single-nucleotide polymorphism (SNP, rs3144) and methylation (CpG sites) in the Lingo-1 3'-UTR region was examined, with the testing of cognitive dysfunction and white matter (WM) integrity in a schizophrenia case-control cohort (n = 268/group). A large subset of subjects (97 control and 161 schizophrenia subjects) underwent structural magnetic resonance imaging (MRI) brain scans to assess WM integrity. Frequency of the rs3144 minor allele was overrepresented in the schizophrenia population ( p = 0.03), with an odds ratio of 1.39 (95% CI 1.016-1.901). CpG sites surrounding rs3144 were hypermethylated in the control population ( p = 0.032) compared to the schizophrenia group. rs3144 genotype was predictive of membership to a subclass of schizophrenia subjects with generalized cognitive deficits ( p < 0.05), in addition to having associations with WM integrity ( p = 0.018). This is the first study reporting a potential implication of genetic and epigenetic risk factors in Lingo-1 in schizophrenia. Both of these genetic and epigenetic alterations may also have associations with cognitive dysfunction and WM integrity in the context of the schizophrenia pathophysiology.
- Published
- 2023
- Full Text
- View/download PDF
12. Correction: Preventing early childhood transmission of hepatitis B in remote Aboriginal communities in northern Australia.
- Author
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Sullivan RP, Davies J, Binks P, McKinnon M, Dhurrkay RG, Hosking K, Bukulatjpi SM, Locarnini S, Littlejohn M, Jackson K, Tong SYC, and Davis JS
- Published
- 2023
- Full Text
- View/download PDF
13. Neurodesk: An accessible, flexible, and portable data analysis environment for reproducible neuroimaging.
- Author
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Renton AI, Dao TT, Johnstone T, Civier O, Sullivan RP, White DJ, Lyons P, Slade BM, Abbott DF, Amos TJ, Bollmann S, Botting A, Campbell MEJ, Chang J, Close TG, Eckstein K, Egan GF, Evas S, Flandin G, Garner KG, Garrido MI, Ghosh SS, Grignard M, Hannan AJ, Huber R, Kaczmarzyk JR, Kasper L, Kuhlmann L, Lou K, Mantilla-Ramos YJ, Mattingley JB, Morris J, Narayanan A, Pestilli F, Puce A, Ribeiro FL, Rogasch NC, Rorden C, Schira M, Shaw TB, Sowman PF, Spitz G, Stewart A, Ye X, Zhu JD, Hughes ME, Narayanan A, and Bollmann S
- Abstract
Neuroimaging data analysis often requires purpose-built software, which can be challenging to install and may produce different results across computing environments. Beyond being a roadblock to neuroscientists, these issues of accessibility and portability can hamper the reproducibility of neuroimaging data analysis pipelines. Here, we introduce the Neurodesk platform, which harnesses software containers to support a comprehensive and growing suite of neuroimaging software (https://www.neurodesk.org/). Neurodesk includes a browser-accessible virtual desktop environment and a command line interface, mediating access to containerized neuroimaging software libraries on various computing platforms, including personal and high-performance computers, cloud computing and Jupyter Notebooks. This community-oriented, open-source platform enables a paradigm shift for neuroimaging data analysis, allowing for accessible, flexible, fully reproducible, and portable data analysis pipelines., Competing Interests: Competing interests The authors declare no financial conflicts of interest.
- Published
- 2023
- Full Text
- View/download PDF
14. Anticoagulation Strategies in Non-Critically Ill Patients with Covid-19.
- Author
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McQuilten ZK, Venkatesh B, Jha V, Roberts J, Morpeth SC, Totterdell JA, McPhee GM, Abraham J, Bam N, Bandara M, Bangi AK, Barina LA, Basnet BK, Bhally H, Bhusal KR, Bogati U, Bowen AC, Burke AJ, Christopher DJ, Chunilal SD, Cochrane B, Curnow JL, Das SK, Dhungana A, Di Tanna GL, Dotel R, DSouza H, Dummer J, Dutta S, Foo H, Gilbey TL, Giles ML, Goli K, Gordon A, Gyanwali P, Haksar D, Hudson BJ, Jani MK, Jevaji PR, Jhawar S, Jindal A, John MJ, John M, John FB, John O, Jones M, Joshi RD, Kamath P, Kang G, Karki AR, Karmalkar AM, Kaur B, Koganti KC, Koshy JM, Krishnamurthy MS, Lau JS, Lewin SR, Lim LL, Marschner IC, Marsh JA, Maze MJ, McGree JM, McMahon JH, Medcalf RL, Merriman EG, Misal AP, Mora JM, Mudaliar VK, Nguyen V, O'Sullivan MV, Pant S, Pant P, Paterson DL, Price DJ, Rees MA, Robinson JO, Rogers BA, Samuel S, Sasadeusz J, Sharma D, Sharma PK, Shrestha R, Shrestha SK, Shrestha P, Shukla U, Shum O, Sommerville C, Spelman T, Sullivan RP, Thatavarthi U, Tran HA, Trask N, Whitehead CL, Mahar RK, Hammond NE, McFadyen JD, Snelling TL, Davis JS, Denholm JT, and Tong SYC
- Subjects
- Humans, Anticoagulants pharmacology, Blood Coagulation, Aspirin pharmacology, COVID-19
- Abstract
BACKGROUND: Optimal thromboprophylaxis for hospitalized patients with coronavirus disease 2019 (Covid-19) is uncertain. METHODS: In an open-label, adaptive platform trial, we randomly assigned hospitalized adults with Covid-19 to low-dose low-molecular-weight heparin thromboprophylaxis or intermediate-dose or low-dose plus aspirin. In response to external evidence, the aspirin intervention was discontinued and a therapeutic-dose arm added. The primary end point was death or the requirement for new organ support by day 28, analyzed with a Bayesian logistic model. Enrolment was closed as a result of operational constraints. RESULTS: Between February 2021 and March 2022, 1574 patients were randomly assigned. Among 1526 participants included in the analysis (India, n=1273; Australia and New Zealand, n=138; and Nepal, n=115), the primary outcome occurred in 35 (5.9%) of 596 in low-dose, 25 (4.2%) of 601 in intermediate-dose, 20 (7.2%) of 279 in low-dose plus aspirin, and 7 (14%) of 50 in therapeutic-dose anticoagulation. Compared with low-dose thromboprophylaxis, the median adjusted odds ratio for the primary outcome for intermediate-dose was 0.74 (95% credible interval [CrI], 0.43 to 1.27; posterior probability of effectiveness [adjusted odds ratio<1; Pr], 86%), for low-dose plus aspirin 0.88 (95% CrI, 0.47 to 1.64; Pr, 65%), and for therapeutic-dose anticoagulation 2.22 (95% CrI, 0.77 to 6.20; Pr, 7%). Overall thrombotic and bleeding rates were 0.8% and 0.4%, respectively. There were 10 serious adverse reactions related to anticoagulation strategy, of which nine were grade 1 or 2 across study interventions and one grade 4 episode of retroperitoneal hematoma in a patient receiving intermediate-dose anticoagulation. CONCLUSIONS: In hospitalized non–critically ill adults with Covid-19, compared with low-dose, there was an 86% posterior probability that intermediate-dose, 65% posterior probability that low-dose plus aspirin, and a 7% posterior probability that therapeutic-dose anticoagulation reduced the odds of death or requirement for organ support. No treatment strategy met prespecified stopping criteria before trial closure, precluding definitive conclusions. (Funded by Australian National Health and Medical Research Council or Medical Research Future Fund Investigator and Practitioner Grants and others; ClinicalTrials.gov number, NCT04483960.)
- Published
- 2023
- Full Text
- View/download PDF
15. Preventing early childhood transmission of hepatitis B in remote aboriginal communities in Northern Australia.
- Author
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Sullivan RP, Davies J, Binks P, McKinnon M, Dhurrkay RG, Hosking K, Bukulatjpi SM, Locarnini S, Littlejohn M, Jackson K, Tong SYC, and Davis JS
- Subjects
- Child, Infant, Newborn, Child, Preschool, Female, Humans, Hepatitis B Vaccines, Infectious Disease Transmission, Vertical prevention & control, Northern Territory epidemiology, Hepatitis B, Chronic prevention & control, Hepatitis B prevention & control
- Abstract
Background: Chronic hepatitis B is a public health concern in Aboriginal communities in the Northern Territory of Australia with prevalence almost four times the non-Aboriginal population. Infection is suspected to mainly occur in early life, however, the mode of transmission and vaccine effectiveness is not known in this population. WHO has set a target for hepatitis B elimination by 2030; elimination in this disproportionately affected population in Australia will require understanding of the modes of transmission and vaccine effectiveness., Methods: We conducted the study at four very remote Aboriginal communities. We approached mothers who had chronic hepatitis B and had given birth between 1988 and 2013 for consent. We obtained hepatitis B serology, immunisation and birth details from the medical record. If both mother and child had hepatitis B viral DNA detected, we performed viral whole genome sequencing., Results: We approached 45 women for consent, of whom 23 agreed to participate. We included 20 mothers and 38 of their children. Of the 20 included mothers, 5 (25%) had children who were hepatitis B immune by exposure and 3 (15%) had children with evidence of chronic hepatitis B infection at the time of assessment. Hepatitis B immunoglobulin (HBIg) had been given at birth in 29/38 (76.3, 95% CI 59.8-88.6) children, and 26 children (68.4, 95% CI 51.3-82.5) were fully vaccinated. Of the 3 children who had chronic hepatitis B, all had received HBIg at birth and two were fully vaccinated. Of the 5 who were immune by exposure, 4 had received HBIg at birth and one was fully vaccinated. Whole genome sequencing revealed one episode of definite mother to child transmission. There was also one definite case of horizontal transmission., Conclusions: Chronic hepatitis B in this context is a sensitive issue, with a high proportion of women refusing consent. Although uncommon, there is ongoing transmission of hepatitis B to Aboriginal children in remote northern Australia despite vaccination, and this is likely occurring by both vertical and horizontal routes. Prevention will require ongoing investment to overcome the many barriers experienced by this population in accessing care., (© 2022. The Author(s).)
- Published
- 2022
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16. Humidity sensors based on molecular rectifiers.
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Sullivan RP, Castellanos-Trejo E, Ma R, Welker ME, and Jurchescu OD
- Abstract
Ambient humidity plays a key role in the health and well-being of us and our surroundings, making it necessary to carefully monitor and control it. To achieve this goal, several types of instruments based on various materials and operating principles have been developed. Reducing the production costs for such systems without affecting their sensitivity and reliability would allow for broader use and greater efficiency. Organic materials are prime candidates for incorporation in humidity sensors given their extraordinary chemical diversity, low cost, and ease of processing. Here, we designed, assembled and tested humidity sensors based on molecular rectifiers that can electrically transduce the changes in the ambient humidity to offer accurate quantitative information in the range of 0 to 70% relative humidity. Their operation relies on the changes occurring in the electric field experienced by the molecular layer upon absorption of the polar water molecules, resulting in modifications in the height and shape of the tunneling barrier. The response is reversible and reproducible upon multiple cycles and, coupled with the simplicity of the device architecture and manufacturing, makes these nanoscale sensors attractive for incorporation in various applications.
- Published
- 2022
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- View/download PDF
17. Intermolecular charge transfer enhances the performance of molecular rectifiers.
- Author
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Sullivan RP, Morningstar JT, Castellanos-Trejo E, Bradford RW 3rd, Hofstetter YJ, Vaynzof Y, Welker ME, and Jurchescu OD
- Abstract
Molecular-scale diodes made from self-assembled monolayers (SAMs) could complement silicon-based technologies with smaller, cheaper, and more versatile devices. However, advancement of this emerging technology is limited by insufficient electronic performance exhibited by the molecular current rectifiers. We overcome this barrier by exploiting the charge-transfer state that results from co-assembling SAMs of molecules with strong electron donor and acceptor termini. We obtain a substantial enhancement in current rectification, which correlates with the degree of charge transfer, as confirmed by several complementary techniques. These findings provide a previously enexplored method for manipulating the properties of molecular electronic devices by exploiting donor/acceptor interactions. They also serve as a model test platform for the study of doping mechanisms in organic systems. Our devices have the potential for fast widespread adoption due to their low-cost processing and self-assembly onto silicon substrates, which could allow seamless integration with current technologies.
- Published
- 2022
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- View/download PDF
18. Two cases of multisystem inflammatory syndrome in adults: experience at a single centre in Sydney.
- Author
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Ko MS, Sullivan RP, Riskallah J, and Weatherall CJ
- Subjects
- Adult, Humans, Male, Middle Aged, Systemic Inflammatory Response Syndrome diagnosis, Systemic Inflammatory Response Syndrome therapy, COVID-19, Shock, Septic diagnosis
- Abstract
We report two cases of middle-aged men who presented with clinical features that satisfied the diagnostic criteria for multisystem inflammatory syndrome in adults (MIS-A). Both patients were treated for toxic shock syndrome and MIS-A and have recovered. The purpose of this article is to communicate our experience and challenges of assessing and treating this condition and to raise awareness of the condition., (© 2022 Royal Australasian College of Physicians.)
- Published
- 2022
- Full Text
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19. A global view of standards for open image data formats and repositories.
- Author
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Swedlow JR, Kankaanpää P, Sarkans U, Goscinski W, Galloway G, Malacrida L, Sullivan RP, Härtel S, Brown CM, Wood C, Keppler A, Paina F, Loos B, Zullino S, Longo DL, Aime S, and Onami S
- Subjects
- Animals, Artificial Intelligence, Computational Biology instrumentation, Databases, Factual, Diagnostic Imaging instrumentation, Humans, Image Processing, Computer-Assisted methods, Information Storage and Retrieval methods, Microscopy methods, Proteomics standards, Societies, Scientific, Software, Spectrum Analysis, Raman, User-Computer Interface, Computational Biology methods, Computational Biology standards, Diagnostic Imaging methods, Diagnostic Imaging standards, Metadata standards
- Published
- 2021
- Full Text
- View/download PDF
20. A Fusion Protein Complex that Combines IL-12, IL-15, and IL-18 Signaling to Induce Memory-Like NK Cells for Cancer Immunotherapy.
- Author
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Becker-Hapak MK, Shrestha N, McClain E, Dee MJ, Chaturvedi P, Leclerc GM, Marsala LI, Foster M, Schappe T, Tran J, Desai S, Neal CC, Pence P, Wong P, Wagner JA, Russler-Germain DA, Zhu X, Spanoudis CM, Gallo VL, Echeverri CA, Ramirez LL, You L, Egan JO, Rhode PR, Jiao JA, Muniz GJ, Jeng EK, Prendes CA, Sullivan RP, Berrien-Elliott MM, Wong HC, and Fehniger TA
- Subjects
- Animals, Cell Line, Tumor, Humans, Immunologic Memory drug effects, Leukemia immunology, Mice, Receptors, Natural Killer Cell metabolism, Recombinant Fusion Proteins pharmacology, Remission Induction, Xenograft Model Antitumor Assays, Interleukin-12 pharmacology, Interleukin-15 pharmacology, Interleukin-18 pharmacology, Killer Cells, Natural immunology, Leukemia therapy
- Abstract
Natural killer (NK) cells are a promising cellular therapy for cancer, with challenges in the field including persistence, functional activity, and tumor recognition. Briefly, priming blood NK cells with recombinant human (rh)IL-12, rhIL-15, and rhIL-18 (12/15/18) results in memory-like NK cell differentiation and enhanced responses against cancer. However, the lack of available, scalable Good Manufacturing Process (GMP)-grade reagents required to advance this approach beyond early-phase clinical trials is limiting. To address this challenge, we developed a novel platform centered upon an inert tissue factor scaffold for production of heteromeric fusion protein complexes (HFPC). The first use of this platform combined IL-12, IL-15, and IL-18 receptor engagement (HCW9201), and the second adds CD16 engagement (HCW9207). This unique HFPC expression platform was scalable with equivalent protein quality characteristics in small- and GMP-scale production. HCW9201 and HCW9207 stimulated activation and proliferation signals in NK cells, but HCW9207 had decreased IL-18 receptor signaling. RNA sequencing and multidimensional mass cytometry revealed parallels between HCW9201 and 12/15/18. HCW9201 stimulation improved NK cell metabolic fitness and resulted in the DNA methylation remodeling characteristic of memory-like differentiation. HCW9201 and 12/15/18 primed similar increases in short-term and memory-like NK cell cytotoxicity and IFNγ production against leukemia targets, as well as equivalent control of leukemia in NSG mice. Thus, HFPCs represent a protein engineering approach that solves many problems associated with multisignal receptor engagement on immune cells, and HCW9201-primed NK cells can be advanced as an ideal approach for clinical GMP-grade memory-like NK cell production for cancer therapy., (©2021 American Association for Cancer Research.)
- Published
- 2021
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21. Viral hepatitis in correctional facilities in the Northern Territory of Australia 2003-2017.
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Sullivan RP, Baird R, Freeman K, Heggie H, Davis JS, Marshall CS, and Davies J
- Subjects
- Adult, Biomarkers blood, Correctional Facilities statistics & numerical data, Databases, Factual, Female, Hepatitis B epidemiology, Hepatitis B Antibodies blood, Hepatitis B Surface Antigens blood, Hepatitis C epidemiology, Hepatitis C Antibodies blood, Humans, Longitudinal Studies, Male, Middle Aged, Northern Territory epidemiology, Prevalence, Retrospective Studies, Young Adult, Hepatitis B diagnosis, Hepatitis C diagnosis
- Abstract
Background: The demographic of Northern Territory prison population differs than elsewhere in Australia and the prevalence of hepatitis B and hepatitis C may therefore be somewhat different from other jurisdictions. There has been no study which has specifically described the serological results of a large proportion of prisoners in Northern Territory correctional facilities over an extended period of time., Methods: This retrospective longitudinal study reviewed serological results and testing rates for hepatitis B, and hepatitis C performed in correctional facilities in the Northern Territory of Australia between July 1st, 2003 and June 30th, 2017., Results: The proportion of positive records over 14 years for hepatitis B surface antigen (HBsAg) was 641/12,066 (5.3, 95% CI 4.9-5.7), for hepatitis B core antibody (anti-HBc) 4937/12,138 (40.1, 95%CI 39.8-41.6), for hepatitis B surface antibody (anti-HBs) 6966/13,303 (52.4, 95% CI 51.5-53.2), and for hepatitis C antibody 569/12,153 (4.7, 95% CI 4.3-5.1). The proportion of prisoners tested for hepatitis B and hepatitis C has decreased since 2015, while a high proportion of prisoners remain non-immune to hepatitis B., Conclusion: There is a relatively high proportion of positive serological markers of hepatitis B, and a lower proportion of positive hepatitis C serology in the Northern Territory's correctional facilities compared to overall Australian rates. As the proportion of prisoners tested for hepatitis B and C has decreased recently, and a high proportion of prisoners remain non-immune to hepatitis B, there are opportunities to increase testing and vaccination rates in this population.
- Published
- 2021
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22. Self-Replicating RNAs Drive Protective Anti-tumor T Cell Responses to Neoantigen Vaccine Targets in a Combinatorial Approach.
- Author
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Maine CJ, Richard G, Spasova DS, Miyake-Stoner SJ, Sparks J, Moise L, Sullivan RP, Garijo O, Choz M, Crouse JM, Aguilar A, Olesiuk MD, Lyons K, Salvador K, Blomgren M, DeHart JL, Kamrud KI, Berdugo G, De Groot AS, Wang NS, and Aliahmad P
- Subjects
- Animals, Cancer Vaccines immunology, Colonic Neoplasms genetics, Colonic Neoplasms immunology, Female, Humans, Male, Mice, Mice, Inbred BALB C, Mice, Inbred C57BL, Primates, Tumor Cells, Cultured, Vaccination, Antigens, Neoplasm immunology, CD4-Positive T-Lymphocytes immunology, Cancer Vaccines administration & dosage, Colonic Neoplasms therapy, Immunity, Cellular immunology, Replicon
- Abstract
Historically poor clinical results of tumor vaccines have been attributed to weakly immunogenic antigen targets, limited specificity, and vaccine platforms that fail to induce high-quality polyfunctional T cells, central to mediating cellular immunity. We show here that the combination of antigen selection, construct design, and a robust vaccine platform based on the Synthetically Modified Alpha Replicon RNA Technology (SMARRT), a self-replicating RNA, leads to control of tumor growth in mice. Therapeutic immunization with SMARRT replicon-based vaccines expressing tumor-specific neoantigens or tumor-associated antigen were able to generate polyfunctional CD4
+ and CD8+ T cell responses in mice. Additionally, checkpoint inhibitors, or co-administration of cytokine also expressed from the SMARRT platform, synergized to enhance responses further. Lastly, SMARRT-based immunization of non-human primates was able to elicit high-quality T cell responses, demonstrating translatability and clinical feasibility of synthetic replicon technology for therapeutic oncology vaccines., (Copyright © 2020 The American Society of Gene and Cell Therapy. Published by Elsevier Inc. All rights reserved.)- Published
- 2021
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23. Blood-borne virus testing in patients diagnosed with non-Hodgkin lymphoma.
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Sullivan RP, Gaskell C, Lewis CR, and Post JJ
- Subjects
- Herpesvirus 4, Human, Humans, Lymphoma, Non-Hodgkin diagnosis
- Published
- 2021
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24. 2020 Review and revision of the 2015 Darwin melioidosis treatment guideline; paradigm drift not shift.
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Sullivan RP, Marshall CS, Anstey NM, Ward L, and Currie BJ
- Subjects
- Administration, Intravenous methods, Adult, Bacteremia drug therapy, Burkholderia pseudomallei, Female, Guidelines as Topic, Humans, Male, Melioidosis mortality, Middle Aged, Northern Territory, Osteomyelitis surgery, Prospective Studies, Recurrence, Retrospective Studies, Thailand, Anti-Bacterial Agents therapeutic use, Melioidosis drug therapy, Melioidosis genetics, Selection, Genetic
- Abstract
Background: Melioidosis therapy is divided into an intravenous intensive phase and an oral eradication phase. The Darwin melioidosis treatment guideline has evolved over two decades, with over 1150 consecutive patients with culture-confirmed melioidosis managed under the Darwin Prospective Melioidosis Study. The current guideline, published in 2015, has been associated with low rates of recrudescence, relapse and mortality, and together with the treatment trials in Thailand, forms the basis for consensus global guidelines. We aimed to reassess the Darwin guideline and determine if any adjustments to the recommendations better reflect current practice in melioidosis therapy at Royal Darwin Hospital., Methodology/principal Findings: This retrospective cohort study reviews the characteristics, admission duration, duration of intravenous antibiotics, recrudescence, recurrence and mortality in all patients presenting with first episode culture-confirmed melioidosis in the tropical north of Australia's Northern Territory from 1st October 2012 until 1st January 2017. 234 patients were available for analysis. 16 (6.8%) died during the intensive phase treatment and 6 (2.6%) did not have complete treatment at Royal Darwin Hospital, leaving 212 patients for analysis. Six (2.8%) patients had recrudescence during therapy and 10 (4.7%) had recurrent melioidosis (relapse or new infection) after completion of therapy. Persisting osteomyelitis requiring surgery was an important reason for recrudescence as was unrecognized osteomyelitis for relapse. For patients presenting with an antibiotic duration determining focus of pneumonia, durations of intravenous antibiotics were often prolonged beyond the current 2-week minimum treatment recommendation. Prolongation of therapy in pneumonia mostly occurred in patients presenting with multi-lobar disease or with concurrent blood culture positivity., Conclusions/significance: The 2015 Darwin melioidosis guideline is working well with low rates of recrudescence, relapse and mortality. Based on the practice of the treating clinicians, the 2020 revision of the guideline has been adjusted to include a duration of a minimum of 3 weeks of intravenous antibiotics for those with concurrent bacteraemia and pneumonia involving only a single lobe and those with bilateral and unilateral multi-lobar pneumonias who do not have bacteraemia. We also extend to a minimum of 4 weeks intravenous therapy for those with concurrent bacteraemia and bilateral or unilateral multi-lobar pneumonia., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2020
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25. Stage-Specific Requirement for Eomes in Mature NK Cell Homeostasis and Cytotoxicity.
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Wagner JA, Wong P, Schappe T, Berrien-Elliott MM, Cubitt C, Jaeger N, Lee M, Keppel CR, Marin ND, Foltz JA, Marsala L, Neal CC, Sullivan RP, Schneider SE, Keppel MP, Saucier N, Cooper MA, and Fehniger TA
- Subjects
- Animals, Antigens, Ly genetics, Antigens, Ly metabolism, Apoptosis, Cell Cycle Checkpoints, Histocompatibility Antigens Class I genetics, Histocompatibility Antigens Class I metabolism, Killer Cells, Natural cytology, Killer Cells, Natural metabolism, Mice, Mice, Inbred C57BL, Mice, Knockout, Natural Cytotoxicity Triggering Receptor 1 genetics, Natural Cytotoxicity Triggering Receptor 1 metabolism, Receptors, Interleukin-15 metabolism, STAT5 Transcription Factor metabolism, Signal Transduction, Spleen cytology, Spleen immunology, T-Box Domain Proteins deficiency, T-Box Domain Proteins genetics, Killer Cells, Natural immunology, T-Box Domain Proteins metabolism
- Abstract
Natural killer (NK) cells are cytotoxic innate lymphoid cells (ILCs) that mediate antiviral and antitumor responses and require the transcriptional regulator Eomesodermin (Eomes) for early development. However, the role of Eomes and its molecular program in mature NK cell biology is unclear. To address this, we develop a tamoxifen-inducible, type-1-ILC-specific (Ncr1-targeted) cre mouse and combine this with Eomes-floxed mice. Eomes deletion after normal NK cell ontogeny results in a rapid loss of NK cells (but not ILC1s), with a particularly profound effect on penultimately mature stage III NK cells. Mechanisms responsible for stage III reduction include increased apoptosis and impaired maturation from stage II precursors. Induced Eomes deletion also decreases NK cell cytotoxicity and abrogates in vivo rejection of major histocompatibility complex (MHC)-class-I-deficient cells. However, other NK cell functional responses, and stage IV NK cells, are largely preserved. These data indicate that mature NK cells have distinct Eomes-dependent and -independent stages., Competing Interests: Declaration of Interests The authors declare no competing interests., (Copyright © 2020 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2020
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26. Point of care and oral fluid hepatitis B testing in remote Indigenous communities of northern Australia.
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Sullivan RP, Davies J, Binks P, Dhurrkay RG, Gurruwiwi GG, Bukulatjpi SM, McKinnon M, Hosking K, Littlejohn M, Jackson K, Locarnini S, Davis JS, and Tong SYC
- Subjects
- Humans, Australia epidemiology, Hepatitis B Surface Antigens blood, Hepatitis B Surface Antigens isolation & purification, Sensitivity and Specificity, Point-of-Care Systems, Saliva virology, Australian Aboriginal and Torres Strait Islander Peoples statistics & numerical data, Hepatitis B, Chronic blood, Hepatitis B, Chronic diagnosis, Hepatitis B, Chronic virology
- Abstract
Many Indigenous Australians in northern Australia living with chronic hepatitis B are unaware of their diagnosis due to low screening rates. A venous blood point of care test (POCT) or oral fluid laboratory test could improve testing uptake in this region. The purpose of this study was to assess the field performance of venous blood POCT and laboratory performance of an oral fluid hepatitis B surface antigen (HBsAg) test in Indigenous individuals living in remote northern Australian communities. The study was conducted with four very remote communities in the tropical north of Australia's Northern Territory. Community research workers collected venous blood and oral fluid samples. We performed the venous blood POCT for HBsAg in the field. We assessed the venous blood and oral fluid specimens for the presence of HBsAg using standard laboratory assays. We calculated the sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV) of the POCT and oral fluid test, using serum laboratory detection of HBsAg as the gold standard. From 215 enrolled participants, 155 POCT and 197 oral fluid tests had corresponding serum HBsAg results. The POCT had a sensitivity of 91.7% and specificity of 100%. Based on a population prevalence of 6%, the PPV was 100% and NPV was 99.5%. The oral fluid test had a sensitivity of 56.8%, specificity of 98.1%, PPV of 97.3% and NPV of 65.9%. The venous blood POCT has excellent test characteristics and could be used to identify individuals with chronic HBV infection in high prevalence communities with limited access to health care. Oral fluid performance was suboptimal., (© 2019 John Wiley & Sons Ltd.)
- Published
- 2020
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27. MicroRNA-142 Is Critical for the Homeostasis and Function of Type 1 Innate Lymphoid Cells.
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Berrien-Elliott MM, Sun Y, Neal C, Ireland A, Trissal MC, Sullivan RP, Wagner JA, Leong JW, Wong P, Mah-Som AY, Wong TN, Schappe T, Keppel CR, Cortez VS, Stamatiades EG, Li MO, Colonna M, Link DC, French AR, Cooper MA, Wang WL, Boldin MP, Reddy P, and Fehniger TA
- Subjects
- Animals, Cell Line, Female, HEK293 Cells, Humans, Killer Cells, Natural immunology, Male, Mice, Mice, Inbred BALB C, Mice, Inbred C57BL, Muromegalovirus immunology, NIH 3T3 Cells, Receptors, Interleukin-15 immunology, Signal Transduction immunology, Suppressor of Cytokine Signaling Proteins immunology, Transforming Growth Factor beta immunology, Homeostasis immunology, Immunity, Innate immunology, Lymphocytes immunology, MicroRNAs immunology
- Abstract
Natural killer (NK) cells are cytotoxic type 1 innate lymphoid cells (ILCs) that defend against viruses and mediate anti-tumor responses, yet mechanisms controlling their development and function remain incompletely understood. We hypothesized that the abundantly expressed microRNA-142 (miR-142) is a critical regulator of type 1 ILC biology. Interleukin-15 (IL-15) signaling induced miR-142 expression, whereas global and ILC-specific miR-142-deficient mice exhibited a cell-intrinsic loss of NK cells. Death of NK cells resulted from diminished IL-15 receptor signaling within miR-142-deficient mice, likely via reduced suppressor of cytokine signaling-1 (Socs1) regulation by miR-142-5p. ILCs persisting in Mir142
-/- mice demonstrated increased expression of the miR-142-3p target αV integrin, which supported their survival. Global miR-142-deficient mice exhibited an expansion of ILC1-like cells concurrent with increased transforming growth factor-β (TGF-β) signaling. Further, miR-142-deficient mice had reduced NK-cell-dependent function and increased susceptibility to murine cytomegalovirus (MCMV) infection. Thus, miR-142 critically integrates environmental cues for proper type 1 ILC homeostasis and defense against viral infection., (Copyright © 2019 Elsevier Inc. All rights reserved.)- Published
- 2019
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28. Oral eradication therapy for melioidosis: Important but not without risks.
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Sullivan RP, Ward L, and Currie BJ
- Subjects
- Administration, Oral, Adult, Anti-Bacterial Agents therapeutic use, Burkholderia pseudomallei drug effects, Burkholderia pseudomallei isolation & purification, Doxycycline therapeutic use, Female, Humans, Male, Middle Aged, Northern Territory, Retrospective Studies, Trimethoprim, Sulfamethoxazole Drug Combination therapeutic use, Melioidosis drug therapy
- Abstract
Objectives: The purpose of this study was to quantify the adverse effects from oral eradication therapy for melioidosis, which is usually with high dose trimethoprim-sulfamethoxazole for 3-6 months., Methods: This retrospective cohort study reviewed side effects from oral eradication therapy in patients presenting with first episode culture-confirmed melioidosis in the tropical north of Australia's Northern Territory between 1st October 2012 and 1st January 2017., Results: 234 patients presented for the first time with culture-confirmed melioidosis. Of these, 16 (6.8%) died during the intensive phase treatment and 6 (2.6%) did not have complete treatment at Royal Darwin Hospital. Of the remaining 212 patients, 203 (95.8%) were initially prescribed trimethoprim-sulfamethoxazole as oral eradication therapy, 6 (2.8%) were prescribed doxycycline and 3 (1.4%) had no eradication therapy. Of the 203 prescribed trimethoprim-sulfamethoxazole, 61 (30.0%) experienced adverse effects, which necessitated a cessation, a change in antibiotic or reduction in dose., Conclusions: In patients treated for melioidosis in northern Australia there are high rates of adverse effects from oral trimethoprim-sulfamethoxazole, frequently necessitating a change in therapy or a reduction in dose. Given the side effects and low rates of oral therapy completion in our region we emphasise the importance of the prior often prolonged intensive phase intravenous therapy and using weight based trimethoprim-sulfamethoxazole dosing for eradication therapy., (Copyright © 2019 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2019
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29. CD56bright NK cells exhibit potent antitumor responses following IL-15 priming.
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Wagner JA, Rosario M, Romee R, Berrien-Elliott MM, Schneider SE, Leong JW, Sullivan RP, Jewell BA, Becker-Hapak M, Schappe T, Abdel-Latif S, Ireland AR, Jaishankar D, King JA, Vij R, Clement D, Goodridge J, Malmberg KJ, Wong HC, and Fehniger TA
- Subjects
- Animals, CD56 Antigen metabolism, Cell Degranulation, Coculture Techniques, Cytotoxicity, Immunologic, Humans, Immunity, Innate, Immunologic Factors pharmacology, Immunotherapy, Integrins physiology, K562 Cells, Mice, Inbred NOD, Mice, SCID, Neoplasm Transplantation, Proteins pharmacology, Recombinant Fusion Proteins, Signal Transduction, Interleukin-15 pharmacology, Killer Cells, Natural physiology, Leukemia, Myeloid, Acute therapy, Multiple Myeloma therapy
- Abstract
NK cells, lymphocytes of the innate immune system, are important for defense against infectious pathogens and cancer. Classically, the CD56dim NK cell subset is thought to mediate antitumor responses, whereas the CD56bright subset is involved in immunomodulation. Here, we challenge this paradigm by demonstrating that brief priming with IL-15 markedly enhanced the antitumor response of CD56bright NK cells. Priming improved multiple CD56bright cell functions: degranulation, cytotoxicity, and cytokine production. Primed CD56bright cells from leukemia patients demonstrated enhanced responses to autologous blasts in vitro, and primed CD56bright cells controlled leukemia cells in vivo in a murine xenograft model. Primed CD56bright cells from multiple myeloma (MM) patients displayed superior responses to autologous myeloma targets, and furthermore, CD56bright NK cells from MM patients primed with the IL-15 receptor agonist ALT-803 in vivo displayed enhanced ex vivo functional responses to MM targets. Effector mechanisms contributing to IL-15-based priming included improved cytotoxic protein expression, target cell conjugation, and LFA-1-, CD2-, and NKG2D-dependent activation of NK cells. Finally, IL-15 robustly stimulated the PI3K/Akt/mTOR and MEK/ERK pathways in CD56bright compared with CD56dim NK cells, and blockade of these pathways attenuated antitumor responses. These findings identify CD56bright NK cells as potent antitumor effectors that warrant further investigation as a cancer immunotherapy.
- Published
- 2017
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30. Young Woman With Syncope.
- Author
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Sullivan RP, Baker WE, and Byrne MW
- Subjects
- Adult, Diagnosis, Differential, Echocardiography, Electrocardiography, Female, Heart Valve Prosthesis Implantation, Humans, Mitral Valve Stenosis surgery, Radiography, Thoracic, Rheumatic Heart Disease surgery, Mitral Valve Stenosis diagnosis, Rheumatic Heart Disease diagnosis, Syncope diagnosis
- Published
- 2016
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31. Successful Treatment of Multiple Multidrug Resistant Intracranial Tuberculomata.
- Author
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Sullivan RP, Goldberg HF, Mellick RS, and Post JJ
- Abstract
A 21-year-old Bangladesh-born man presented with a month history of evolving neurological symptoms in the context of a six-month history of fever, night sweats, and axillary lymphadenopathy. He was subsequently diagnosed with multiple multidrug resistant intracranial tuberculomata and was successfully treated over two years. Intracranial multidrug resistant tuberculosis has a high mortality and successful treatment is rarely reported. Management is complex and requires consideration of the penetration and likely effect of antituberculous agents within the central nervous system. We discuss the role of various antituberculous agents, the duration of therapy, the utility of corticosteroids, the value of intrathecal and systemic therapy, and the need for rapid diagnosis., Competing Interests: The authors declare that there is no conflict of interests regarding the publication of this paper.
- Published
- 2016
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32. MicroRNA-15/16 Antagonizes Myb To Control NK Cell Maturation.
- Author
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Sullivan RP, Leong JW, Schneider SE, Ireland AR, Berrien-Elliott MM, Singh A, Schappe T, Jewell BA, Sexl V, and Fehniger TA
- Subjects
- 3' Untranslated Regions, Adoptive Transfer, Animals, Cell Differentiation genetics, Cell Line, Cell Proliferation genetics, HEK293 Cells, Humans, Interferon-gamma biosynthesis, Killer Cells, Natural transplantation, Mice, Mice, Inbred C57BL, Mice, Knockout, RNA Interference, RNA, Messenger biosynthesis, RNA, Messenger genetics, RNA, Small Interfering, Killer Cells, Natural cytology, Killer Cells, Natural immunology, MicroRNAs genetics, Proto-Oncogene Proteins c-myb genetics
- Abstract
NK cells develop in the bone marrow and complete their maturation in peripheral organs, but the molecular events controlling maturation are incompletely understood. The miR-15/16 family of microRNA regulates key cellular processes and is abundantly expressed in NK cells. In this study, we identify a critical role for miR-15/16 in the normal maturation of NK cells using a mouse model of NK-specific deletion, in which immature NK cells accumulate in the absence of miR-15/16. The transcription factor c-Myb (Myb) is expressed preferentially by immature NK cells, is a direct target of miR-15/16, and is increased in 15a/16-1 floxed knockout NK cells. Importantly, maturation of 15a/16-1 floxed knockout NK cells was rescued by Myb knockdown. Moreover, Myb overexpression in wild-type NK cells caused a defective NK cell maturation phenotype similar to deletion of miR-15/16, and Myb overexpression enforces an immature NK cell transcriptional profile. Thus, miR-15/16 regulation of Myb controls the NK cell maturation program., (Copyright © 2015 by The American Association of Immunologists, Inc.)
- Published
- 2015
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33. PTEN regulates natural killer cell trafficking in vivo.
- Author
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Leong JW, Schneider SE, Sullivan RP, Parikh BA, Anthony BA, Singh A, Jewell BA, Schappe T, Wagner JA, Link DC, Yokoyama WM, and Fehniger TA
- Subjects
- Animals, Mice, Mice, Transgenic, PTEN Phosphohydrolase genetics, Phosphatidylinositol 3-Kinases metabolism, Receptors, Immunologic metabolism, Receptors, Immunologic physiology, Signal Transduction, Cell Movement, Killer Cells, Natural immunology, PTEN Phosphohydrolase physiology
- Abstract
Phosphatase and tensin homolog (PTEN) is a critical negative regulator of the phosphoinositide-3 kinase pathway, members of which play integral roles in natural killer (NK) cell development and function. However, the functions of PTEN in NK cell biology remain unknown. Here, we used an NK cell-specific PTEN-deletion mouse model to define the ramifications of intrinsic NK cell PTEN loss in vivo. In these mice, there was a significant defect in NK cell numbers in the bone marrow and peripheral organs despite increased proliferation and intact peripheral NK cell maturation. Unexpectedly, we observed a significant expansion of peripheral blood NK cells and the premature egress of NK cells from the bone marrow. The altered trafficking of NK cells from peripheral organs into the blood was due to selective hyperresponsiveness to the blood localizing chemokine S1P. To address the importance of this trafficking defect to NK cell immune responses, we investigated the ability of PTEN-deficient NK cells to traffic to a site of tumor challenge. PTEN-deficient NK cells were defective at migrating to distal tumor sites but were more effective at clearing tumors actively introduced into the peripheral blood. Collectively, these data identify PTEN as an essential regulator of NK cell localization in vivo during both homeostasis and malignancy.
- Published
- 2015
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34. microRNA management of NK-cell developmental and functional programs.
- Author
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Leong JW, Sullivan RP, and Fehniger TA
- Subjects
- Animals, Humans, Immunity, Innate immunology, Killer Cells, Natural cytology, Lymphocyte Activation genetics, Lymphocyte Activation immunology, Immunity, Innate genetics, Killer Cells, Natural immunology, MicroRNAs immunology
- Abstract
NK cells are innate lymphoid cells that are critical for host defense against infection, and mediate anti-tumor responses. MicroRNAs (miRNAs) are a large family of small noncoding RNAs that target the 3' untranslated region (UTR) of mRNAs, thereby attenuating protein translation. The expression of miRNAs within human peripheral blood and mouse splenic NK cells has been cataloged, with the majority of the miRNA sequence pool represented in the top 60 most abundantly expressed miRNAs. Global miRNA deficiency within NK cells has confirmed their critical role in NK-cell biology, including defects in NK-cell development and altered functionality. Studies using gain- and loss-of-function of individual miRNAs in NK cells have demonstrated the role of specific miRNAs in regulating NK-cell development, maturation, and activation. miRNAs also regulate fundamental NK-cell processes including cytokine production, cytotoxicity, and proliferation. This review provides an update on the intrinsic miRNA regulation of NK cells, including miRNA expression profiles, as well as their impact on NK-cell biology. Additional profiling is needed to better understand miRNA expression within NK-cell developmental intermediates, subsets, tissues, and in the setting of disease. Furthermore, key open questions in the field as well as technical challenges in the study of miRNAs in NK cells are highlighted., (© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2014
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35. Ink-on-probe hydrodynamics in atomic force microscope deposition of liquid inks.
- Author
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O'Connell CD, Higgins MJ, Sullivan RP, Moulton SE, and Wallace GG
- Abstract
The controlled deposition of attolitre volumes of liquids may engender novel applications such as soft, nano-tailored cell-material interfaces, multi-plexed nano-arrays for high throughput screening of biomolecular interactions, and localized delivery of reagents to reactions confined at the nano-scale. Although the deposition of small organic molecules from an AFM tip, known as dip-pen nanolithography (DPN), is being continually refined, AFM deposition of liquid inks is not well understood, and is often fraught with inconsistent deposition rates. In this work, the variation in feature-size over long term printing experiments for four model inks of varying viscosity is examined. A hierarchy of recurring phenomena is uncovered and there are attributed to ink movement and reorganisation along the cantilever itself. Simple analytical approaches to model these effects, as well as a method to gauge the degree of ink loading using the cantilever resonance frequency, are described. In light of the conclusions, the various parameters which need to be controlled in order to achieve uniform printing are dicussed. This work has implications for the nanopatterning of viscous liquids and hydrogels, encompassing ink development, the design of probes and printing protocols., (© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2014
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36. Preactivation with IL-12, IL-15, and IL-18 induces CD25 and a functional high-affinity IL-2 receptor on human cytokine-induced memory-like natural killer cells.
- Author
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Leong JW, Chase JM, Romee R, Schneider SE, Sullivan RP, Cooper MA, and Fehniger TA
- Subjects
- Adoptive Transfer, Animals, Cell Proliferation, Cells, Cultured, Cytokine-Induced Killer Cells drug effects, Cytokine-Induced Killer Cells transplantation, Gene Expression Regulation, Humans, Immunologic Memory, Interleukin-12 pharmacology, Interleukin-15 pharmacology, Interleukin-18 pharmacology, Interleukin-2 pharmacology, Interleukin-2 Receptor alpha Subunit genetics, Killer Cells, Natural drug effects, Killer Cells, Natural transplantation, Mice, Mice, Inbred NOD, Mice, SCID, Receptors, Interleukin-2 genetics, STAT5 Transcription Factor genetics, STAT5 Transcription Factor immunology, Signal Transduction, Transplantation, Heterologous, Cytokine-Induced Killer Cells immunology, Interleukin-2 Receptor alpha Subunit immunology, Killer Cells, Natural immunology, Lymphocyte Activation drug effects, Receptors, Interleukin-2 immunology
- Abstract
Natural killer (NK) cells are effector lymphocytes that are under clinical investigation for the adoptive immunotherapy of hematologic malignancies, especially acute myeloid leukemia. Recent work in mice has identified innate memory-like properties of NK cells. Human NK cells also exhibit memory-like properties, and cytokine-induced memory-like (CIML) NK cells are generated via brief preactivation with IL-12, IL-15, and IL-18, which later exhibit enhanced functionality upon restimulation. However, the optimal cytokine receptors and signals for maintenance of enhanced function and homeostasis after preactivation remain unclear. Here, we show that IL-12, IL-15, and IL-18 preactivation induces a rapid and prolonged expression of CD25, resulting in a functional high-affinity IL-2 receptor (IL-2Rαβγ) that confers responsiveness to picomolar concentrations of IL-2. The expression of CD25 correlated with STAT5 phosphorylation in response to picomolar concentrations of IL-2, indicating the presence of a signal-competent IL-2Rαβγ. Furthermore, picomolar concentrations of IL-2 acted synergistically with IL-12 to costimulate IFN-γ production by preactivated NK cells, an effect that was CD25 dependent. Picomolar concentrations of IL-2 also enhanced NK cell proliferation and cytotoxicity via the IL-2Rαβγ. Further, after adoptive transfer into immunodeficient NOD-SCID-γc(-/-) mice, human cytokine-preactivated NK cells expand preferentially in response to exogenous IL-2. Collectively, these data demonstrate that human CIML NK cells respond to IL-2 via IL-2Rαβγ with enhanced survival and functionality, and they provide additional rationale for immunotherapeutic strategies that include brief cytokine preactivation before adoptive NK cell transfer, followed by low-dose IL-2 therapy., (Copyright © 2014 American Society for Blood and Marrow Transplantation. Published by Elsevier Inc. All rights reserved.)
- Published
- 2014
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37. Nanoscale platinum printing on insulating substrates.
- Author
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O'Connell CD, Higgins MJ, Sullivan RP, Jamali SS, Moulton SE, and Wallace GG
- Abstract
The deposition of noble metals on soft and/or flexible substrates is vital for several emerging applications including flexible electronics and the fabrication of soft bionic implants. In this paper, we describe a new strategy for the deposition of platinum electrodes on a range of materials, including insulators and flexible polymers. The strategy is enabled by two principle advances: (1) the introduction of a novel, low temperature strategy for reducing chloroplatinic acid to platinum using nitrogen plasma; (2) the development of a chloroplatinic acid based liquid ink formulation, utilizing ethylene glycol as both ink carrier and reducing agent, for versatile printing at nanoscale resolution using dip-pen nanolithography (DPN). The ink formulation has been printed and reduced upon Si, glass, ITO, Ge, PDMS, and Parylene C. The plasma treatment effects reduction of the precursor patterns in situ without subjecting the substrate to destructively high temperatures. Feature size is controlled via dwell time and degree of ink loading, and platinum features with 60 nm dimensions could be routinely achieved on Si. Reduction of the ink to platinum was confirmed by energy dispersive x-ray spectroscopy (EDS) elemental analysis and x-ray diffraction (XRD) measurements. Feature morphology was characterized by optical microscopy, SEM and AFM. The high electrochemical activity of individually printed Pt features was characterized using scanning electrochemical microscopy (SECM).
- Published
- 2013
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38. MicroRNA-155 tunes both the threshold and extent of NK cell activation via targeting of multiple signaling pathways.
- Author
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Sullivan RP, Fogel LA, Leong JW, Schneider SE, Wong R, Romee R, Thai TH, Sexl V, Matkovich SJ, Dorn GW 2nd, French AR, and Fehniger TA
- Subjects
- Animals, Calcineurin physiology, Cells, Cultured, Cytomegalovirus Infections immunology, Gene Expression Regulation drug effects, Genes, Reporter, Genetic Vectors genetics, Humans, Interferon-gamma biosynthesis, Interferon-gamma genetics, Interleukins pharmacology, Killer Cells, Natural drug effects, Killer Cells, Natural metabolism, Lentivirus genetics, Mice, Mice, Inbred C57BL, Mice, Knockout, MicroRNAs biosynthesis, MicroRNAs genetics, Models, Immunological, NF-kappa B physiology, Phosphatidylinositol 3-Kinases physiology, RNA Interference, Recombinant Fusion Proteins metabolism, Sequence Analysis, RNA, Specific Pathogen-Free Organisms, Transduction, Genetic, Up-Regulation, Gene Expression Regulation immunology, Killer Cells, Natural immunology, Lymphocyte Activation physiology, MicroRNAs physiology, Signal Transduction physiology
- Abstract
NK cells are innate lymphocytes important for host defense against viral infections and malignancy. However, the molecular programs orchestrating NK cell activation are incompletely understood. MicroRNA-155 (miR-155) is markedly upregulated following cytokine activation of human and mouse NK cells. Surprisingly, mature human and mouse NK cells transduced to overexpress miR-155, NK cells from mice with NK cell-specific miR-155 overexpression, and miR-155(-/-) NK cells all secreted more IFN-γ compared with controls. Investigating further, we found that activated NK cells with miR-155 overexpression had increased per-cell IFN-γ with normal IFN-γ(+) percentages, whereas greater percentages of miR-155(-/-) NK cells were IFN-γ(+). In vivo murine CMV-induced IFN-γ expression by NK cells in these miR-155 models recapitulated the in vitro phenotypes. We performed unbiased RNA-induced silencing complex sequencing on wild-type and miR-155(-/-) NK cells and found that mRNAs targeted by miR-155 were enriched in NK cell activation signaling pathways. Using specific inhibitors, we confirmed these pathways were mechanistically involved in regulating IFN-γ production by miR-155(-/-) NK cells. These data indicate that miR-155 regulation of NK cell activation is complex and that miR-155 functions as a dynamic tuner for NK cell activation via both setting the activation threshold as well as controlling the extent of activation in mature NK cells. In summary, miR-155(-/-) NK cells are more easily activated, through increased expression of proteins in the PI3K, NF-κB, and calcineurin pathways, and miR-155(-/-) and 155-overexpressing NK cells exhibit increased IFN-γ production through distinct cellular mechanisms.
- Published
- 2013
- Full Text
- View/download PDF
39. MicroRNA regulation of natural killer cells.
- Author
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Sullivan RP, Leong JW, and Fehniger TA
- Abstract
Natural killer (NK) cells are innate immune lymphocytes critical for host defense against viral infection and surveillance against malignant transformation. MicroRNAs (miRNAs) are a family of small, non-coding RNAs that regulate a wide variety of cellular processes. Recent advances have highlighted the importance of miRNA-mediated post-transcriptional regulation in NK cell development, maturation, and function. This review focuses on several facets of this regulatory mechanism in NK cells: (1) the expressed NK cell miRNA transcriptome; (2) the impact of total miRNA deficiency on NK cells; (3) the role of specific miRNAs regulating NK cell development, survival, and maturation; (4) the intrinsic role of miRNAs regulating NK cell function, including cytokine production, proliferation, and cytotoxicity; and (5) the role of NK cell miRNAs in disease. Currently our knowledge of how miRNAs regulate NK cell biology is limited, and thus we also explore key open questions in the field, as well as approaches and techniques to ascertain the role of individual miRNAs as important molecular regulators.
- Published
- 2013
- Full Text
- View/download PDF
40. Cytokine activation induces human memory-like NK cells.
- Author
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Romee R, Schneider SE, Leong JW, Chase JM, Keppel CR, Sullivan RP, Cooper MA, and Fehniger TA
- Subjects
- Antigens, CD immunology, Antigens, CD metabolism, Antigens, Differentiation, T-Lymphocyte immunology, Antigens, Differentiation, T-Lymphocyte metabolism, CD56 Antigen immunology, CD56 Antigen metabolism, Cell Proliferation drug effects, Cytokines pharmacology, Flow Cytometry, Humans, Immunologic Memory immunology, Interferon-gamma genetics, Interferon-gamma metabolism, Interleukin-12 immunology, Interleukin-12 pharmacology, Interleukin-15 immunology, Interleukin-15 pharmacology, Interleukin-18 immunology, Interleukin-18 pharmacology, K562 Cells, Killer Cells, Natural drug effects, Killer Cells, Natural metabolism, Lectins, C-Type immunology, Lectins, C-Type metabolism, Lymphocyte Activation drug effects, NK Cell Lectin-Like Receptor Subfamily C immunology, NK Cell Lectin-Like Receptor Subfamily C metabolism, NK Cell Lectin-Like Receptor Subfamily D immunology, NK Cell Lectin-Like Receptor Subfamily D metabolism, Receptors, Interleukin-12 genetics, Receptors, Interleukin-12 immunology, Receptors, Interleukin-12 metabolism, Receptors, Interleukin-18 genetics, Receptors, Interleukin-18 immunology, Receptors, Interleukin-18 metabolism, Reverse Transcriptase Polymerase Chain Reaction, Time Factors, Cytokines immunology, Interferon-gamma immunology, Killer Cells, Natural immunology, Lymphocyte Activation immunology
- Abstract
Natural killer (NK) cells are lymphocytes that play an important role in the immune response to infection and malignancy. Recent studies in mice have shown that stimulation of NK cells with cytokines or in the context of a viral infection results in memory-like properties. We hypothesized that human NK cells exhibit such memory-like properties with an enhanced recall response after cytokine preactivation. In the present study, we show that human NK cells preactivated briefly with cytokine combinations including IL-12, IL-15, and IL-18 followed by a 7- to 21-day rest have enhanced IFN-γ production after restimulation with IL-12 + IL-15, IL-12 + IL-18, or K562 leukemia cells. This memory-like phenotype was retained in proliferating NK cells. In CD56(dim) NK cells, the memory-like IFN-γ response was correlated with the expression of CD94, NKG2A, NKG2C, and CD69 and a lack of CD57 and KIR. Therefore, human NK cells have functional memory-like properties after cytokine activation, which provides a novel rationale for integrating preactivation with combinations of IL-12, IL-15, and IL-18 into NK cell immunotherapy strategies.
- Published
- 2012
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- View/download PDF
41. MicroRNA-deficient NK cells exhibit decreased survival but enhanced function.
- Author
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Sullivan RP, Leong JW, Schneider SE, Keppel CR, Germino E, French AR, and Fehniger TA
- Subjects
- 3' Untranslated Regions, Animals, Cell Degranulation, Cell Survival, Cytokines metabolism, Cytotoxicity, Immunologic, DEAD-box RNA Helicases deficiency, DEAD-box RNA Helicases genetics, DEAD-box RNA Helicases physiology, Herpesviridae Infections immunology, Immunity, Innate, Interferon-gamma genetics, Interferon-gamma metabolism, Interleukin-15 pharmacology, Lymphoid Tissue immunology, Lymphoid Tissue pathology, Mice, Mice, Inbred C57BL, Mice, Transgenic, MicroRNAs biosynthesis, Muromegalovirus, Organ Specificity, Ribonuclease III deficiency, Ribonuclease III genetics, Ribonuclease III physiology, Specific Pathogen-Free Organisms, Killer Cells, Natural immunology, MicroRNAs physiology
- Abstract
NK cells are innate immune lymphocytes important for early host defense against infectious pathogens and malignant transformation. MicroRNAs (miRNAs) are small RNA molecules that regulate a wide variety of cellular processes, typically by specific complementary targeting of the 3'UTR of mRNAs. The Dicer1 gene encodes a conserved enzyme essential for miRNA processing, and Dicer1 deficiency leads to a global defect in miRNA biogenesis. In this study, we report a mouse model of lymphocyte-restricted Dicer1 disruption to evaluate the role of Dicer1-dependent miRNAs in the development and function of NK cells. As expected, Dicer1-deficient NK cells had decreased total miRNA content. Furthermore, miRNA-deficient NK cells exhibited reduced survival and impaired maturation defined by cell surface phenotypic markers. However, Dicer1-deficient NK cells exhibited enhanced degranulation and IFN-γ production in vitro in response to cytokines, tumor target cells, and activating NK cell receptor ligation. Moreover, a similar phenotype of increased IFN-γ was evident during acute MCMV infection in vivo. miRs-15a/15b/16 were identified as abundant miRNAs in NK cells that directly target the murine IFN-γ 3'UTR, thereby providing a potential mechanism for enhanced IFN-γ production. These data suggest that the function of miRNAs in NK cell biology is complex, with an important role in NK cell development, survival, or homeostasis, while tempering peripheral NK cell activation. Further study of individual miRNAs in an NK cell specific fashion will provide insight into these complex miRNA regulatory effects in NK cell biology.
- Published
- 2012
- Full Text
- View/download PDF
42. Natural killer cell regulation by microRNAs in health and disease.
- Author
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Leong JW, Sullivan RP, and Fehniger TA
- Subjects
- Animals, Gene Expression Regulation, Humans, Killer Cells, Natural pathology, MicroRNAs genetics, Models, Biological, Disease genetics, Health, Killer Cells, Natural metabolism, MicroRNAs metabolism
- Abstract
Natural killer (NK) cells are innate immune lymphocytes that are critical for normal host defense against infections and mediate antitumor immune responses. MicroRNAs (miRNAs) are a family of small, noncoding RNAs that posttranscriptionally regulate the majority of cellular processes and pathways. Our understanding of how miRNAs regulate NK cells biology is limited, but recent studies have provided novel insight into their expression by NK cells, and how they contribute to the regulation of NK cell development, maturation, survival, and effector function. Here, we review the expression of miRNAs by NK cells, their contribution to cell intrinsic and extrinsic control of NK cell development and effector response, and their dysregulation in NK cell malignancies.
- Published
- 2012
- Full Text
- View/download PDF
43. Next-generation sequencing identifies the natural killer cell microRNA transcriptome.
- Author
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Fehniger TA, Wylie T, Germino E, Leong JW, Magrini VJ, Koul S, Keppel CR, Schneider SE, Koboldt DC, Sullivan RP, Heinz ME, Crosby SD, Nagarajan R, Ramsingh G, Link DC, Ley TJ, and Mardis ER
- Subjects
- Animals, Base Sequence, Cells, Cultured, Computational Biology instrumentation, Computational Biology methods, Gene Expression Regulation drug effects, Granzymes genetics, High-Throughput Nucleotide Sequencing instrumentation, Interleukin-15 pharmacology, Lymphocyte Activation drug effects, Lymphocyte Activation genetics, Mice, Mice, Inbred C57BL, MicroRNAs isolation & purification, MicroRNAs metabolism, MicroRNAs physiology, Molecular Sequence Data, Nucleic Acid Hybridization methods, Sequence Analysis, RNA instrumentation, Sequence Analysis, RNA methods, Sequence Homology, Nucleic Acid, Gene Expression Profiling methods, High-Throughput Nucleotide Sequencing methods, Killer Cells, Natural metabolism, MicroRNAs genetics
- Abstract
Natural killer (NK) cells are innate lymphocytes important for early host defense against infectious pathogens and surveillance against malignant transformation. Resting murine NK cells regulate the translation of effector molecule mRNAs (e.g., granzyme B, GzmB) through unclear molecular mechanisms. MicroRNAs (miRNAs) are small noncoding RNAs that post-transcriptionally regulate the translation of their mRNA targets, and are therefore candidates for mediating this control process. While the expression and importance of miRNAs in T and B lymphocytes have been established, little is known about miRNAs in NK cells. Here, we used two next-generation sequencing (NGS) platforms to define the miRNA transcriptomes of resting and cytokine-activated primary murine NK cells, with confirmation by quantitative real-time PCR (qRT-PCR) and microarrays. We delineate a bioinformatics analysis pipeline that identified 302 known and 21 novel mature miRNAs from sequences obtained from NK cell small RNA libraries. These miRNAs are expressed over a broad range and exhibit isomiR complexity, and a subset is differentially expressed following cytokine activation. Using these miRNA NGS data, miR-223 was identified as a mature miRNA present in resting NK cells with decreased expression following cytokine activation. Furthermore, we demonstrate that miR-223 specifically targets the 3' untranslated region of murine GzmB in vitro, indicating that this miRNA may contribute to control of GzmB translation in resting NK cells. Thus, the sequenced NK cell miRNA transcriptome provides a valuable framework for further elucidation of miRNA expression and function in NK cell biology.
- Published
- 2010
- Full Text
- View/download PDF
44. Structure and engineering of L-arabinitol 4-dehydrogenase from Neurospora crassa.
- Author
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Bae B, Sullivan RP, Zhao H, and Nair SK
- Subjects
- Amino Acid Sequence, Catalysis, Crystallography, X-Ray, Humans, Kinetics, Models, Molecular, Molecular Sequence Data, Mutagenesis, Site-Directed, NAD metabolism, Protein Conformation, Protein Engineering, Sequence Homology, Amino Acid, Substrate Specificity, Sugar Alcohol Dehydrogenases genetics, Sugar Alcohol Dehydrogenases metabolism, Sugar Alcohols metabolism, Neurospora crassa enzymology, Sugar Alcohol Dehydrogenases chemistry
- Abstract
L-arabinitol 4-dehydrogenase (LAD) catalyzes the conversion of l-arabinitol into l-xylulose with concomitant NAD(+) reduction. It is an essential enzyme in the development of recombinant organisms that convert l-arabinose into fuels and chemicals using the fungal l-arabinose catabolic pathway. Here we report the crystal structure of LAD from the filamentous fungus Neurospora crassa at 2.6 A resolution. In addition, we created a number of site-directed variants of N. crassa LAD that are capable of utilizing NADP(+) as cofactor, yielding the first example of LAD with an almost completely switched cofactor specificity. This work represents the first structural data on any LAD and provides a molecular basis for understanding the existing literature on the substrate specificity and cofactor specificity of this enzyme. The engineered LAD mutants with altered cofactor specificity should be useful for applications in industrial biotechnology., (Copyright 2010 Elsevier Ltd. All rights reserved.)
- Published
- 2010
- Full Text
- View/download PDF
45. Optogenetic control of striatal dopamine release in rats.
- Author
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Bass CE, Grinevich VP, Vance ZB, Sullivan RP, Bonin KD, and Budygin EA
- Subjects
- Animals, Humans, Male, Optical Phenomena, Rats, Rats, Sprague-Dawley, Corpus Striatum metabolism, Dopamine genetics, Dopamine metabolism, Photic Stimulation methods
- Abstract
Optogenetic control over neuronal firing has become an increasingly elegant method to dissect the microcircuitry of mammalian brains. To date, examination of these manipulations on neurotransmitter release has been minimal. Here we present the first in-depth analysis of optogenetic stimulation on dopamine neurotransmission in the dorsal striatum of urethane-anesthetized rats. By combining the tight spatial and temporal resolution of both optogenetics and fast-scan cyclic voltammetry we have determined the parameters necessary to control phasic dopamine release in the dorsal striatum of rats in vivo. The kinetics of optically induced dopamine release mirror established models of electrically evoked release, indicating that potential artifacts of electrical stimulation on ion channels and the dopamine transporter are negligible. Furthermore a lack of change in extracellular pH indicates that optical stimulation does not alter blood flow. Optical control over dopamine release is highly reproducible and flexible. We are able to repeatedly evoke concentrations of dopamine release as small as a single dopamine transient (50 nM). An inverted U-shaped frequency response curve exists with maximal stimulation inducing dopamine effluxes exceeding 500 nM. Taken together, these results have obvious implications for understanding the neurobiological basis of dopaminergic-based disorders and provide the framework to effectively manipulate dopamine patterns.
- Published
- 2010
- Full Text
- View/download PDF
46. Cloning, characterization, and engineering of fungal L-arabinitol dehydrogenases.
- Author
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Kim B, Sullivan RP, and Zhao H
- Subjects
- Aspergillus niger chemistry, Aspergillus niger enzymology, Aspergillus niger genetics, Enzyme Stability, Fungal Proteins metabolism, Kinetics, Penicillium chrysogenum chemistry, Penicillium chrysogenum enzymology, Penicillium chrysogenum genetics, Pichia chemistry, Pichia enzymology, Pichia genetics, Substrate Specificity, Sugar Alcohol Dehydrogenases metabolism, Trichoderma enzymology, Trichoderma genetics, Trichoderma metabolism, Cloning, Molecular, Fungal Proteins chemistry, Fungal Proteins genetics, Protein Engineering, Sugar Alcohol Dehydrogenases chemistry, Sugar Alcohol Dehydrogenases genetics
- Abstract
L-Arabinitol 4-dehydrogenase (LAD) catalyzes the conversion of L-arabinitol to L-xylulose with concomitant NAD(+) reduction in fungal L-arabinose catabolism. It is an important enzyme in the development of recombinant organisms that convert L: -arabinose to fuels and chemicals. Here, we report the cloning, characterization, and engineering of four fungal LADs from Penicillium chrysogenum, Pichia guilliermondii, Aspergillus niger, and Trichoderma longibrachiatum, respectively. The LAD from P. guilliermondii was inactive, while the other three LADs were NAD(+)-dependent and showed high catalytic activities, with P. chrysogenum LAD being the most active. T. longibrachiatum LAD was the most thermally stable and showed the maximum activity in the temperature range of 55-65 degrees C with the other LADs showed the maximum activity in the temperature range of 40-50 degrees C. These LADs were active from pH 7 to 11 with an optimal pH of 9.4. Site-directed mutagenesis was used to alter the cofactor specificity of these LADs. In a T. longibrachiatum LAD mutant, the cofactor preference toward NADP(+) was increased by 2.5 x 10(4)-fold, whereas the cofactor preference toward NADP(+) of the P. chrysogenum and A. niger LAD mutants was also drastically improved, albeit at the expense of significantly reduced catalytic efficiencies. The wild-type LADs and their mutants with altered cofactor specificity could be used to investigate the functionality of the fungal L-arabinose pathways in the development of recombinant organisms for efficient microbial L-arabinose utilization.
- Published
- 2010
- Full Text
- View/download PDF
47. Building confidence into communication of bad news: The role of the patient advocate.
- Author
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Sullivan RP, Waldemayer CR, and Bunting RF Jr
- Subjects
- Humans, Medical Errors prevention & control, Patient Advocacy, Professional-Family Relations, Professional-Patient Relations, Truth Disclosure
- Abstract
The need for a patient advocate is greater than ever as medical errors continue to occur. News media quickly capture the egregious errors, but more errors are experienced by patients who suffer quietly. These patients know something wrong occurred during their hospitalization, but they choose to refrain from pursuing litigation against the providers. There also are thousands of individuals who never realize that a medical error occurred. In a patient- and family-centered care environment, patient advocates can bridge these issues by participating on the healthcare team that is involved with the initial disclosure of the event and by providing a caring relationship to assure the patient's voice is heard and understood.
- Published
- 2010
- Full Text
- View/download PDF
48. The effect of leaving dentures in place on bag-mask ventilation at induction of general anesthesia.
- Author
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Conlon NP, Sullivan RP, Herbison PG, Zacharias M, and Buggy DJ
- Subjects
- Aged, Aged, 80 and over, Anesthesia, General instrumentation, Female, Humans, Male, Middle Aged, Prospective Studies, Respiration, Artificial instrumentation, Anesthesia, General methods, Dentures, Masks, Respiration, Artificial methods
- Abstract
Background: The optimum timing for denture removal in edentulous patients before anesthesia and surgery is uncertain., Methods: We conducted a prospective, randomized, controlled trial to evaluate the effect of leaving dentures in during bag-mask ventilation at induction of general anesthesia. One hundred sixty-six edentulous patients were randomized to two groups. The Dentures-In group was bag-mask ventilated after induction of anesthesia with dentures left in place. The Dentures-Out group patients had their dentures removed before bag-mask ventilation. The degree of difficulty of bag-mask ventilation was assessed by the anesthesiologist., Results: Successful bag-mask ventilation, as defined by a increase in ETco(2) to 20 mm Hg and back to baseline with 3 L/min fresh gas flow and the adjustable pressure limiting valve at 20 cm H(2)O, was achieved in 61 of 84 (73%) of the Dentures-In patients compared with 40 of 81 (49%) of the Dentures-Out patients (odds ratio 0.37, 95% CI = 0.19-0.70, P = 0.002)., Conclusion: We conclude that bag-mask ventilation is easier in edentulate patients when their dentures are left in situ during induction of general anesthesia.
- Published
- 2007
- Full Text
- View/download PDF
49. Schwann cell-onion bulb tumor of the trigeminal nerve: hyperplasia, dysplasia or neoplasia?
- Author
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LaPoint SF, Powers JM, Woodruff JM, MacCollin M, Jacoby LB, Vortmeyer AO, Zhuang Z, Fong CT, Ifthikharuddin SF, Teot L, Coniglio JU, and Sullivan RP
- Subjects
- Child, Preschool, Cranial Nerve Neoplasms diagnosis, Cranial Nerve Neoplasms genetics, Humans, Immunohistochemistry, Magnetic Resonance Imaging, Male, Membrane Proteins genetics, Microscopy, Electron, Neurofibromin 2, Polymorphism, Single-Stranded Conformational, S100 Proteins metabolism, Vimentin metabolism, Cranial Nerve Neoplasms pathology, Schwann Cells pathology, Trigeminal Nerve
- Abstract
Onion bulbs are concentric lamellar structures formed by Schwann or perineurial cells, which may be seen in several generalized or localized diseases of the peripheral nerve. There is debate regarding the pathogenesis of localized tumefactions displaying these microscopic structures. We report the fifth case, to our knowledge, of a Schwann cell-onion bulb tumor, which arose in the trigeminal nerve of a child with an unclassifiable, probably distinct, neurocutaneous syndrome; we also provide evidence for a neoplastic or hamartomatous origin. Molecular studies failed to establish an abnormality in the NF1, NF2, PMP22, or Connexin 32 genes. Similar and previously reported cases are discussed, as well as other onion bulb-forming entities.
- Published
- 2000
- Full Text
- View/download PDF
50. Cell proliferation in breast tumours: analysis of histological parameters Ki67 and PCNA expression.
- Author
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Sullivan RP, Mortimer G, and Muircheartaigh IO
- Subjects
- Adenocarcinoma, Mucinous genetics, Adenocarcinoma, Mucinous metabolism, Antibodies, Monoclonal analysis, Antigens, Neoplasm genetics, Breast Neoplasms genetics, Breast Neoplasms metabolism, Carcinoma, Ductal, Breast metabolism, Cell Count, Cell Division genetics, Female, Gene Expression Regulation, Neoplastic, Humans, Ki-67 Antigen, Macrophages pathology, Neoplasm Proteins genetics, Nuclear Proteins genetics, Proliferating Cell Nuclear Antigen, Adenocarcinoma, Mucinous pathology, Antigens, Neoplasm biosynthesis, Breast Neoplasms pathology, Carcinoma, Ductal, Breast pathology, Neoplasm Proteins biosynthesis, Nuclear Proteins biosynthesis
- Abstract
Ki67 and Proliferating Cell Nuclear Antigen (PCNA) are antigens expressed in the nucleus during various phases of cell division, which can be detected immunohistochemically using monoclonal antibodies. Thirteen fibroadenomas and 39 carcinomas were examined for expression of Ki67 and PCNA. A staining index was calculated for each tumour as the percentage of positive cells in the areas of highest density. The mean index for both antibodies was significantly lower in fibroadenomas than in malignant tumours. A wide range of proliferation rates was seen in the malignant group; the mean Ki67 index of Grade I carcinomas was 9% +/- 4.4 (mean +/- SD), of Grade II 14.3 +/- 8.7 and of Grade III 26.2 +/- 15.7. These differences are statistically significant. In malignant tumours there was a good correlation between the mitotic count and the Ki67 index (r = 0.61, p < 0.005) but none between the mitotic count and PCNA index. There was a weak correlation between the Ki67 and the PCNA indices (r = 0.38 p < 0.005), but no correlation was found between either index and oestrogen receptor status, patient age or tumour size. Ki67 immunohistochemistry is a convenient method for assessing cell proliferation, applicable in most laboratories. The validity of measuring proliferation in this way has yet to be established but the wide variation of expression even within the conventional grading categories may help to discriminate prognostically distinct subgroups. Expression of PCNA appears to correlate poorly with Ki67 expression in breast tumours and not with mitotic count; therefore its usefulness as a marker of proliferative activity, on current evidence, appears to be limited.
- Published
- 1993
- Full Text
- View/download PDF
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