140 results on '"Sun-Lim Kim"'
Search Results
2. Soyasaponin Ab alleviates postmenopausal obesity through browning of white adipose tissue
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Han-Jun Kim, Eun-Ji Choi, Hyo Sung Kim, Chan-Woong Choi, Sik-Won Choi, Sun-Lim Kim, Woo-Duck Seo, and Sun Hee Do
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Soyasaponin Ab ,Anti-adipogenesis ,3T3-L1 adipocytes ,Beige fat ,Estrogen deficiency ,Endocannabinoid system ,Nutrition. Foods and food supply ,TX341-641 - Abstract
Postmenopausal obesity is becoming a serious global health concern. Soyasaponin Ab (SA) inhibits adipocyte differentiation; however, the preventive and therapeutic potential of SA in postmenopausal obesity has not been clearly established. Here, we investigated the anti-obesity effects of SA in postmenopausal obesity in vitro and in vivo. SA inhibited adipocytic differentiation of 3T3-L1 cells and reduced lipid accumulation and lipid droplet formation. Moreover, SA significantly decreased weight gain, adipocyte area, serum metabolic profiles in OVX mice. SA also inhibited the lipid metabolism-related factors but increased the thermoregulatory factors in both in vitro and in vivo. SA treatment further increased energy expenditure through beige fat activation. Overall, we found that SA effectively accelerated energy consumption by stimulating beige fat activation, even under estrogen-deficient conditions. Thus, SA treatment may be a promising strategy for the prevention of postmenopausal obesity by promoting weight loss, reducing fat accumulation, and improving obesity-related metabolic disorders.
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- 2019
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3. De novo Genome Assembly and Single Nucleotide Variations for Soybean Mosaic Virus Using Soybean Seed Transcriptome Data
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Yeonhwa Jo, Hoseong Choi, Miah Bae, Sang-Min Kim, Sun-Lim Kim, Bong Choon Lee, Won Kyong Cho, and Kook-Hyung Kim
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de novo genome assembly ,single nucleotide variation ,soybean mosaic virus ,Plant culture ,SB1-1110 - Abstract
Soybean is the most important legume crop in the world. Several diseases in soybean lead to serious yield losses in major soybean-producing countries. Moreover, soybean can be infected by diverse viruses. Recently, we carried out a large-scale screening to identify viruses infecting soybean using available soybean transcriptome data. Of the screened transcriptomes, a soybean transcriptome for soybean seed development analysis contains several virus-associated sequences. In this study, we identified five viruses, including soybean mosaic virus (SMV), infecting soybean by de novo transcriptome assembly followed by blast search. We assembled a nearly complete consensus genome sequence of SMV China using transcriptome data. Based on phylogenetic analysis, the consensus genome sequence of SMV China was closely related to SMV isolates from South Korea. We examined single nucleotide variations (SNVs) for SMVs in the soybean seed transcriptome revealing 780 SNVs, which were evenly distributed on the SMV genome. Four SNVs, C-U, U-C, A-G, and G-A, were frequently identified. This result demonstrated the quasispecies variation of the SMV genome. Taken together, this study carried out bioinformatics analyses to identify viruses using soybean transcriptome data. In addition, we demonstrated the application of soybean transcriptome data for virus genome assembly and SNV analysis.
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- 2017
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4. The pepper virome: natural co-infection of diverse viruses and their quasispecies
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Yeonhwa Jo, Hoseong Choi, Sang-Min Kim, Sun-Lim Kim, Bong Choon Lee, and Won Kyong Cho
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Cultivar ,Pepper ,Plant virus ,Quasispecies ,Virome ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background The co-infection of diverse viruses in a host plant is common; however, little is known about viral populations and their quasispecies in the host. Results Here, we report the first pepper viromes that were co-infected by different types of viral genomes. The pepper viromes are dominated by geminivirus DNA-A followed by a novel carlavirus referred to as Pepper virus A. The two pepper cultivars share similar viral populations and replications. However, the quasispecies for double-stranded RNA virus and two satellite DNAs were heterogeneous and homogenous in susceptible and resistant cultivars, respectively, indicating the quasispecies of an individual virus depends on the host. Conclusions Taken together, we provide the first evidence that the host plant resistant to viruses has an unrevealed antiviral system, affecting viral quasispecies, not replication.
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- 2017
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5. Elucidation of phenolic antioxidants in barley seedlings (Hordeum vulgare L.) by UPLC-PDA-ESI/MS and screening for their contents at different harvest times
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Jin Hwan Lee, Mi Jin Park, Hyung Won Ryu, Heung Joo Yuk, Sik-Won Choi, Kwang-Sik Lee, Sun-Lim Kim, and Woo Duck Seo
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Barley seedlings ,Harvest time ,Phenolic compound ,Antioxidant activity ,UPLC-PDA-ESI/MS ,NMR ,Nutrition. Foods and food supply ,TX341-641 - Abstract
The changes in phenolic and antioxidant capacities of seedlings of various barley cultivars through four different harvest times were investigated. Ten phenolics were characterised as hydroxycinnamic acid, orientin, isoorientin, and isovitexin derivatives using UPLC-PDA-ESI/MS and NMR. In particular, lutonarin (2) and saponarin (3) were the predominant constituents (71–75%) with significant differences in cultivars and harvest times. The highest average total phenolic content was found as 2671.8 mg/100 g on 23 days after the sowing, whereas the lowest was 1400.8 mg/100 g on 56 days. The radical scavenging abilities also exhibited considerable differences in 80% of methanol extracts (40 µg/mL), depending upon the phenolic contents. Interestingly, isoorientin (5) and orientin (6) possessed potent antioxidant effects with IC50 values of 20.7 ± 1.1 and 27.5 ± 7.3 µM (DPPH) and 5.7 ± 0.3 and 8.2 ± 0.3 µM (ABTS), respectively. These results may be contributed to enhancing the value of barley as a functional food ingredient and dietary supplement.
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- 2016
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6. De novo transcriptome assembly of Sorghum bicolor variety Taejin
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Yeonhwa Jo, Sen Lian, Jin Kyong Cho, Hoseong Choi, Sang-Min Kim, Sun-Lim Kim, Bong Choon Lee, and Won Kyong Cho
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RNA-Seq ,Sorghum bicolor ,Transcriptome ,Variety ,Genetics ,QH426-470 - Abstract
Sorghum (Sorghum bicolor), also known as great millet, is one of the most popular cultivated grass species in the world. Sorghum is frequently consumed as food for humans and animals as well as used for ethanol production. In this study, we conducted de novo transcriptome assembly for sorghum variety Taejin by next-generation sequencing, obtaining 8.748 GB of raw data. The raw data in this study can be available in NCBI SRA database with accession number of SRX1715644. Using the Trinity program, we identified 222,161 transcripts from sorghum variety Taejin. We further predicted coding regions within the assembled transcripts by the TransDecoder program, resulting in a total of 148,531 proteins. We carried out BLASTP against the Swiss-Prot protein sequence database to annotate the functions of the identified proteins. To our knowledge, this is the first transcriptome data for a sorghum variety derived from Korea, and it can be usefully applied to the generation of genetic markers.
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- 2016
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7. De novo transcriptome assembly of two Vigna angularis varieties collected from Korea
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Yeonhwa Jo, Sen Lian, Jin Kyong Cho, Hoseong Choi, Sang-Min Kim, Sun-Lim Kim, Bong Choon Lee, and Won Kyong Cho
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Adzuki bean ,RNA-Seq ,Transcriptome ,Variety ,Vigna angularis ,Genetics ,QH426-470 - Abstract
The adzuki bean (Vigna angularis), a member of the family Fabaceae, is widely grown in Asia, from East Asia to the Himalayas. The adzuki bean is known as an ingredient that adds sweetness to diverse desserts made in Eastern Asian countries. Libraries prepared from two V. angularis varieties referred to as Taejin Black and Taejin Red were paired-end sequenced using the Illumina HiSeq 2000 system. The raw data in this study can be available in NCBI SRA database with accession numbers of SRR3406660 and SRR3406553. After de novo transcriptome assembly using Trinity, we obtained 324,219 and 280,056 transcripts from Taejin Black and Taejin Red, respectively. We predicted a total of 238,321 proteins and 179,519 proteins for Taejin Black and Taejin Red, respectively, by the TransDecoder program. We carried out BLASTP on the predicted proteins against the Swiss-Prot protein sequence database to predict the putative functions of identified proteins. Taken together, we provide transcriptomes of two adzuki bean varieties by RNA-Seq, which might be usefully applied to generate molecular markers.
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- 2016
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8. De novo transcriptome assembly of Setatria italica variety Taejin
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Yeonhwa Jo, Sen Lian, Jin Kyong Cho, Hoseong Choi, Sang-Min Kim, Sun-Lim Kim, Bong Choon Lee, and Won Kyong Cho
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Foxtail millet ,RNA-Seq ,Setalica italica ,Transcriptome ,Variety ,Genetics ,QH426-470 - Abstract
Foxtail millet (Setaria italica) belonging to the family Poaceae is an important millet that is widely cultivated in East Asia. Of the cultivated millets, the foxtail millet has the longest history and is one of the main food crops in South India and China. Moreover, foxtail millet is a model plant system for biofuel generation utilizing the C4 photosynthetic pathway. In this study, we carried out de novo transcriptome assembly for the foxtail millet variety Taejin collected from Korea using next-generation sequencing. We obtained a total of 8.676 GB raw data by paired-end sequencing. The raw data in this study can be available in NCBI SRA database with accession number of SRR3406552. The Trinity program was used to de novo assemble 145,332 transcripts. Using the TransDecoder program, we predicted 82,925 putative proteins. BLASTP was performed against the Swiss-Prot protein sequence database to annotate the functions of identified proteins, resulting in 20,555 potentially novel proteins. Taken together, this study provides transcriptome data for the foxtail millet variety Taejin by RNA-Seq.
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- 2016
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9. ‘Hwanggeummatchal’, a Single Cross Hybrid Waxy Corn with High Carotenoid Content and Good Eating Quality
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Beom-Young Son, Seong-Bum Baek, Jung-Tae Kim, Hwan-Hee Bae, Gibum Yi, Sun-Lim Kim, Young Sam Go, Seong-Hyu Shin, and Jin-Seok Lee
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Waxy corn ,chemistry.chemical_classification ,biology ,chemistry ,media_common.quotation_subject ,Quality (business) ,Food science ,biology.organism_classification ,Carotenoid ,media_common - Published
- 2020
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10. Timing and Pattern of Anthocyanin Accumulation during Grain Filling in Purple Waxy Corn (Zea mays L.) Suggest Optimal Harvest Dates
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Beom-Young Son, Hwan-Hee Bae, Seong-Bum Baek, Gibum Yi, Jung-Tae Kim, Ill-Min Chung, Young Sam Go, Sun-Lim Kim, and Jun Young Ha
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Waxy corn ,chemistry.chemical_classification ,biology ,General Chemical Engineering ,General Chemistry ,Grain filling ,biology.organism_classification ,Zea mays ,Amino acid ,Chemistry ,chemistry.chemical_compound ,Horticulture ,chemistry ,Anthocyanin ,Composition (visual arts) ,Cultivar ,Amino acid content ,QD1-999 - Abstract
Purple-corn kernels contain anthocyanins, a group of antioxidants proposed to be beneficial to human health. This study investigated the concentrations of anthocyanins and amino acids and the composition of fatty acids in the kernels of purple waxy corn (Zea mays L.) "Heukjinjuchal" during grain filling to determine when the grain nutritional value is at its highest. During grain filling, anthocyanin contents increased as the kernel color darkened. Among the anthocyanins measured, cyanidin-3-β-O-glucoside reached the highest contents, 57.0-409.1 mg kg-1 fresh weight in raw kernels and 1027.6 mg kg-1 in dry seeds. Pelargonidin-3-β-O-glucoside and malvidin-3-β-O-glucoside became detectable at 21 days after silking; they occurred in the second- and third-highest amounts, respectively, among anthocyanins in the purple-corn cultivars tested. The anthocyanin accumulation pattern was strongly associated with physicochemical properties and partly associated with amino acid content. Anthocyanin contents increased in a stepwise rather than linear fashion. This study showed that kernels undergo dramatic changes that affect the nutritional value of fresh corn.
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- 2020
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11. ‘Godangok 1’, a Good Quality Sweet Single-Cross Corn Hybrid with High Sugar Content
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Sun-Lim Kim, Hwan-Hee Bae, Tae-Wook Jung, Seong-Bum Baek, Gun-Ho Jung, Young-Sam Ko, Jin-Seok Lee, Sang Gon Kim, Sung-Kook Kim, Jung-Tae Kim, and Gibum Yi, and Beom-Young Son
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media_common.quotation_subject ,High sugar ,Quality (business) ,Food science ,Biology ,media_common - Published
- 2020
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12. Changes and Prospects in the Development of Corn Varieties in Korea
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Beom-Young Son, Hwan-Hee Bae, and Sun-Lim Kim, Young-Sam Go, Seong-Bum Baek, and Jung-Tae Kim
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business.industry ,Plant breeding ,Biology ,Variety (linguistics) ,business ,Biotechnology - Published
- 2020
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13. A Sweet Single-Cross Corn Hybrid ‘Baekgeumok’ with High Sugar Content and Good Quality
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Sang Gon Kim, Jung-Tae Kim, Seong-Bum Baek, Tae-Wook Jung, and Young-Sam Go, Sun-Lim Kim, Beom-Young Son, Jang-Hwan Park, Jeom-Ho Lee, Min-Jung Seo, Jin-Seok Lee, and Hwan-Hee Bae
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Horticulture ,Crop yield ,media_common.quotation_subject ,Flavour ,Crop quality ,Quality (business) ,High sugar ,Biology ,Hybrid ,media_common - Published
- 2020
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14. Comparison of antioxidant activity assays in fresh purple waxy corn (Zea mays L.) during grain filling
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Jung-Tae Kim, Ill-Min Chung, Mi-Jung Kim, Jin-Seok Lee, Beom-Young Son, Hwan-Hee Bae, Young Sam Go, Sun-Lim Kim, Seong-Bum Baek, Seung-Hyun Kim, and Gibum Yi
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Organic Chemistry ,General Biochemistry, Genetics and Molecular Biology - Abstract
Purple waxy corn is a good source of antioxidant compounds such as anthocyanins and polyphenols. Promotion of its use requires an appropriate assay to determine antioxidant activity. The aim of this study is to verify compatibility of the antioxidant activity assays by comparing five different assays in daily kernel samples of the fresh purple waxy corn during grain filling. The levels of antioxidants measured by 2,2-diphenyl-1-picrylhydrazyl, ferric reducing antioxidant power, and chemiluminescence showed significant positive correlations with the levels measured by the other assays (r = 0.761–0.893; p r = 0.798–0.924; p r = 0.764; p r > 0.699; p
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- 2022
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15. Effects of Germinated Soy Germ Extract on Ovariectomy-Induced Memory Loss, Obesity, and Osteoporosis in Rats
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Hyun Cheol Jeong, Seunghun Lee, Heui-Jong Yu, Sung-Jin Lee, Oh, Sung-Hoon, Johann Sohn, Sik-Won Choi, Min Young Kwon, Woo-Duck Seo, Min-Kyu Yun, and Sun-Lim Kim
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medicine.medical_specialty ,Nutrition and Dietetics ,Soy germ ,business.industry ,Osteoporosis ,Isoflavones ,medicine.disease ,Obesity ,Menopause ,chemistry.chemical_compound ,Endocrinology ,chemistry ,Germination ,Internal medicine ,medicine ,business ,Food Science - Published
- 2019
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16. Single Cross Maize Hybrid ‘Hwangdaok’ for High Grain Yield
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Beom-Young Son, Hwan-Hee Bae, Young-Sam Go, Seong-Bum Baek, Jung-Tae Kim, Jin-Seok Lee, and Sun-Lim Kim
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Yield (engineering) ,Agronomy ,Crop yield ,Grain yield ,Cultivar ,Biology ,Plant disease resistance ,Hybrid - Published
- 2019
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17. Glycolysis stimulation and storage protein accumulation are hallmarks of maize (Zea mays L.) grain filling
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Beom-Young Son, Hwan-Hee Bae, Jung-Tae Kim, Seung-Hyun Kim, Young Sam Go, Gibum Yi, Ill-Min Chung, Seong-Bum Baek, Sun-Lim Kim, and Mi-Jung Kim
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0106 biological sciences ,chemistry.chemical_classification ,0303 health sciences ,Spots ,Starch ,Organic Chemistry ,food and beverages ,Carbohydrate metabolism ,Proteomics ,01 natural sciences ,General Biochemistry, Genetics and Molecular Biology ,Transcriptome ,03 medical and health sciences ,chemistry.chemical_compound ,chemistry ,Heat shock protein ,Proteome ,Botany ,Storage protein ,030304 developmental biology ,010606 plant biology & botany - Abstract
Maize (Zea mays L.) is a major dietary source of human caloric intake. Grain filling, the developmental stage of the seed during which starch and proteins accumulate, is of great interest in plant biology and agronomy. However, proteomic datasets covering maize seed development, especially during grain filling, are much scarcer than transcriptomic datasets, largely due to the labor-intensive and costly nature of the large-scale analysis required for proteomics. Here, we searched for proteins that showed changes in abundance during four time-points covering the middle stages of grain filling by two-dimensional electrophoresis, MALDI-TOF, and database searches. We detected 1384 protein spots, of which 48 exhibited differential accumulation during grain filling. Of those, we identified the underlying protein for 32 spots: they included enzymes of carbohydrate metabolism, stress-related proteins, and storage proteins, the latter of which represented 34% of all changing proteins during grain filling. Proteins related to carbohydrate metabolism reached their maximum accumulation around 15–20 days after pollination (DAP) and subsequently dropped until 30 DAP. The rise of stress-related proteins such as heat shock proteins demonstrated their involvement in grain filling and seed maturation. This study catalogues the proteome changes during grain filling and provides basic but critical information regarding the biological changes during maize kernel development.
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- 2020
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18. Acute and Subacute Toxicity Evaluation of Corn Silk Extract
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Woo Kyoung Kim, Hyeon Jung Kang, Sun Lim Kim, Myung-Hwan Kim, and Ae Wha Ha
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Nutrition and Dietetics ,Corn silk ,corn silk ,Lethal dose ,fungi ,subacute toxicity ,Subacute toxicity ,04 agricultural and veterinary sciences ,Urine ,Articles ,acute toxicity ,Body weight ,040401 food science ,Acute toxicity ,0404 agricultural biotechnology ,Animal science ,Toxicity ,maysin ,lethal dose ,Icr mice ,Food Science - Abstract
Many studies have reported therapeutic efficacy of corn silk extract. However, research on its toxicity and safe dose range is limited. Thus, the objective of this study was to determine the acute and subacute toxicity of corn silk extract in ICR mice. To determine acute toxicity, corn silk extract containing high levels of maysin was orally administered to mice at a dose of 0 or 2,000 mg/kg. Clinical symptoms, mortality, and body weight changes were recorded for 14 days. To determine subacute toxicity, corn silk extract was orally administered to mice over a 4-week period, and then body weight, water and food consumption, and organ weight were determined. In addition, urine and serum analyses were performed. In the acute toxicity study, no death or abnormal symptoms was observed in all treatment groups during the study period. Body weights did not show any significant change compared to those of the control group. Lethal dose of corn silk extract was estimated to be more than 2,000 mg/kg. In the 4-week subacute toxicity study, there was no corn silk extract related toxic effect on body weight, water intake, food consumption, urine parameters, clinical chemistry, or organ weight. Histopathological examination showed no abnormality related to the administration of corn silk extract at 500 mg/kg. The maximum non-toxic dose of corn silk extract containing high levels of maysin was found to be more than 500 mg/kg.
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- 2018
19. Changes in the Functional Components and Radical Scavenging Activity of Korean Maize Hybrids According to Different Cropping Seasons
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Choon-Ki Lee, Koan Sik Woo, Mi Jung Kim, Sun Lim Kim, Beom-Young Son, Yong Hee Jeon, Eun-Yeong Sim, Gun-Ho Jung, and Hyun-Joo Kim
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0301 basic medicine ,chemistry.chemical_classification ,030109 nutrition & dietetics ,Starch ,Free sugar ,food and beverages ,Plant Science ,Biology ,03 medical and health sciences ,chemistry.chemical_compound ,Horticulture ,chemistry ,Amylose ,Cultivar ,Agronomy and Crop Science ,Water content ,Carotenoid ,Unsaturated fatty acid ,Biotechnology ,Hybrid - Abstract
We evaluated the proximate composition, free sugar content, fatty acid composition, carotenoid content, total phenol content, and radical scavenging activity of the grain from various Korean maize hybrid cultivars grown in two different cropping seasons. The moisture, crude ash, crude fat, crude protein, total starch, and amylose contents were significantly higher in most of the maize hybrid cultivars when grown in the early-season than when grown in the late-season. The free sugar content, fatty acid composition, carotenoid content, and total phenol content differed significantly between cultivars and cropping seasons. The highest unsaturated fatty acid compositions of maize hybrids of early-season and late-season were 86.05 and 86.29%, respectively, in the Daanok cultivar. The carotenoid contents were significantly higher in maize hybrids of late-season compared to those of early-season. The highest total phenol content was 108.09 mg/100 g in Singwangok of the late-season. The radical scavenging activity of maize hybrids differed significantly between cultivars and cropping seasons.
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- 2018
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20. Evaluation of Antioxidant and Tyrosinase Inhibitory Activities of Barley by Cultivars and Milling Recovery
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Haelim Lee, Yu-Young Lee, Sun Lim Kim, Byong Won Lee, Jihae Lee, Seuk Ki Lee, Hyun-Joo Kim, Koan Sik Woo, and Byoungkyu Lee
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Nutrition and Dietetics ,Antioxidant ,Chemistry ,medicine.medical_treatment ,Tyrosinase ,medicine ,Cultivar ,Food science ,Inhibitory postsynaptic potential ,Food Science - Published
- 2017
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21. Changes in the functional components and radical scavenging activity of maize under various roasting conditions
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Koan Sik Woo, Gun-Ho Jung, Byong Won Lee, Ji Hae Lee, Hyun-Joo Kim, Byoung Kyu Lee, Sun Lim Kim, and Mi Jung Kim
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0301 basic medicine ,chemistry.chemical_classification ,030109 nutrition & dietetics ,ABTS ,DPPH ,Flavonoid ,Free sugar ,food and beverages ,04 agricultural and veterinary sciences ,Phenolic acid ,040401 food science ,Applied Microbiology and Biotechnology ,Article ,03 medical and health sciences ,chemistry.chemical_compound ,0404 agricultural biotechnology ,chemistry ,Polyphenol ,Food science ,Homogentisic acid ,Food Science ,Biotechnology ,Roasting - Abstract
The phenolic compounds and radical scavenging activity of ethanolic extracts from maize at various roasting conditions were evaluated in this research. The free sugar contents in roasted maize significantly decreased with higher roasting temperature and longer roasting time. The total polyphenol and total flavonoid contents in roasted maize significantly increased with higher roasting temperature and longer roasting time. The predominant phenolic acid in the roasted maize was homogentisic acid. The contents of homogentisic acid and myricetin in roasted maize significantly increased with higher roasting temperature and longer roasting time. The DPPH and ABTS radical scavenging activities of roasted maize significantly increased with higher roasting temperature and longer roasting time. DPPH and ABTS radical scavenging activities were positively correlated with phenolic compounds. The activities of these components increased following heat treatments because of the low molecularization effects of the heating process, which resulted in active, low-molecular-weight components that were readily extracted.
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- 2017
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22. De novo Genome Assembly and Single Nucleotide Variations for Soybean Mosaic Virus Using Soybean Seed Transcriptome Data
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Miah Bae, Won Kyong Cho, Bong Choon Lee, Yeonhwa Jo, Sun-Lim Kim, Kook-Hyung Kim, Hoseong Choi, and Sang-Min Kim
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0301 basic medicine ,Whole genome sequencing ,Genetics ,single nucleotide variation ,Phylogenetic tree ,biology ,De novo transcriptome assembly ,fungi ,Soybean mosaic virus ,Sequence assembly ,food and beverages ,Viral quasispecies ,lcsh:Plant culture ,biology.organism_classification ,de novo genome assembly ,Genome ,Transcriptome ,03 medical and health sciences ,030104 developmental biology ,soybean mosaic virus ,lcsh:SB1-1110 ,Agronomy and Crop Science ,Research Article - Abstract
Soybean is the most important legume crop in the world. Several diseases in soybean lead to serious yield losses in major soybean-producing countries. Moreover, soybean can be infected by diverse viruses. Recently, we carried out a large-scale screening to identify viruses infecting soybean using available soybean transcriptome data. Of the screened transcriptomes, a soybean transcriptome for soybean seed development analysis contains several virus-associated sequences. In this study, we identified five viruses, including soybean mosaic virus (SMV), infecting soybean by de novo transcriptome assembly followed by blast search. We assembled a nearly complete consensus genome sequence of SMV China using transcriptome data. Based on phylogenetic analysis, the consensus genome sequence of SMV China was closely related to SMV isolates from South Korea. We examined single nucleotide variations (SNVs) for SMVs in the soybean seed transcriptome revealing 780 SNVs, which were evenly distributed on the SMV genome. Four SNVs, C-U, U-C, A-G, and G-A, were frequently identified. This result demonstrated the quasispecies variation of the SMV genome. Taken together, this study carried out bioinformatics analyses to identify viruses using soybean transcriptome data. In addition, we demonstrated the application of soybean transcriptome data for virus genome assembly and SNV analysis.
- Published
- 2017
23. Corn silk maysin ameliorates obesity in vitro and in vivo via suppression of lipogenesis, differentiation, and function of adipocytes
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Yong Il Park, Jisun Lee, Chang Won Lee, Jeong Yeon Seo, Sun-Lim Kim, and Ji Won Choi
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Blood Glucose ,0301 basic medicine ,medicine.medical_specialty ,Adipose tissue ,Diet, High-Fat ,Weight Gain ,Zea mays ,030226 pharmacology & pharmacy ,Cell Line ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Glucosides ,In vivo ,3T3-L1 Cells ,Internal medicine ,Lipid droplet ,Adipocyte ,Adipocytes ,CCAAT-Enhancer-Binding Protein-alpha ,medicine ,Animals ,Obesity ,Triglycerides ,Caspase ,Flavonoids ,Pharmacology ,Adipogenesis ,biology ,Lipogenesis ,Body Weight ,Cell Differentiation ,Cholesterol, LDL ,General Medicine ,In vitro ,Mice, Inbred C57BL ,PPAR gamma ,030104 developmental biology ,Endocrinology ,chemistry ,biology.protein ,Anti-Obesity Agents ,Intracellular - Abstract
Present study was aimed to investigate the potential anti-obesity effects of maysin, a major flavonoid of corn silk, in vitro and in vivo using 3T3-L1 preadipocyte cells and C57BL/6 mice. Maysin decreased the levels of intracellular lipid droplets and triglycerides (TG), and down-regulated the protein expression levels of C/EBP-β, C/EBP-α, PPAR-γ, and aP2 in 3T3-L1 preadipocyte cells, suggesting that maysin inhibits lipid accumulation and adipocyte differentiation. In addition, maysin was shown to induce the apoptotic cell death in 3T3-L1 preadipocyte cells via activation of caspase cascades and mitochondrial dysfunction, which may ultimately lead to reduction of adipose tissue mass. Furthermore, oral administration of maysin (25mg/kg body weight) decreased weight gain and epididymal fat weight in high-fat diet (HFD)-fed C57BL/6 mice. Administration of maysin also reduced serum levels of TG, total-cholesterol, LDL-cholesterol, and glucose. Taken collectively, these results suggest for the first time that the purified maysin exerts an anti-obesity effect in vitro and in vivo. These observations may support the applicability of maysin as a potent functional ingredient in health-beneficial foods or as a therapeutic agent to prevent or treat obesity.
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- 2017
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24. Corn silk extract improves benign prostatic hyperplasia in experimental rat model
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Hyun Ji Choi, Woo Kyoung Kim, Hyeon Jung Kang, Myung-Hwan Kim, Sun Lim Kim, So Ra Kim, and Ae Wha Ha
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0301 basic medicine ,Testosterone propionate ,medicine.medical_specialty ,Zea mays ,Andrology ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Prostate ,Internal medicine ,medicine ,Orchiectomy ,Testosterone ,Original Research ,Nutrition and Dietetics ,Hyperplasia ,medicine.disease ,finasteride ,Prostate-specific antigen ,030104 developmental biology ,medicine.anatomical_structure ,Endocrinology ,chemistry ,030220 oncology & carcinogenesis ,Dihydrotestosterone ,testosterone ,Finasteride ,maysin ,Food Science ,medicine.drug - Abstract
BACKGROUND/OBJECTIVES This study was conducted to investigate the effect of a corn silk extract on improving benign prostatic hyperplasia (BPH). MATERIALS/METHODS The experimental animals, 6-week-old male Wistar rats, were divided into sham-operated control (Sham) and experimental groups. The experimental group, which underwent orchiectomy and received subcutaneous injection of 10 mg/kg of testosterone propionate to induce BPH, was divided into a Testo Only group that received only testosterone, a Testo+Fina group that received testosterone and 5 mg/kg finasteride, a Testo+CSE10 group that received testosterone and 10 mg/kg of corn silk extract, and a Testo+CSE100 group that received testosterone and 100 mg/kg of corn silk extract. Prostate weight and concentrations of dihydrotestosterone (DHT), 5α-reductase 2 (5α-R2), and prostate specific antigen (PSA) in serum or prostate tissue were determined. The mRNA expressions of 5α-R2 and proliferating cell nuclear antigen (PCNA) in prostate tissue were also measured. RESULTS Compared to the Sham group, prostate weight was significantly higher in the Testo Only group and decreased significantly in the Testo+Fina, Testo+CSE10, and Testo+CSE100 groups (P < 0.05), results that were consistent with those for serum DHT concentrations. The concentrations of 5α-R2 in serum and prostate as well as the mRNA expression of 5α-R2 in prostate were significantly lower in the Testo+Fina, Testo+CSE10, and Testo+CSE100 groups than that in the Testo Only group (P < 0.05). Similarly, the concentrations of PSA in serum and prostate were significantly lower in the Testo+Fina, Testo+CSE10, and Testo+CSE100 groups (P < 0.05) than in the Testo Only group. The mRNA expression of PCNA in prostate dose-independently decreased in the Testo+CSE-treated groups (P < 0.05). CONCLUSIONS BPH was induced through injection of testosterone, and corn silk extract treatment improved BPH symptoms by inhibiting the mRNA expression of 5α-R2 and decreasing the amount of 5α-R2, DHT, and PSA in serum and prostate tissue.
- Published
- 2017
25. Multi-response Optimization for Unfertilized Corn Silk Extraction Against Phytochemical Contents and Bio-activities
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Hyeon Jung Kang, Woo Kyoung Kim, Sun Lim Kim, Myung-Hwan Kim, and Ji Eun Lim
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chemistry.chemical_classification ,Chromatography ,Central composite design ,Corn silk ,Chemistry ,DPPH ,Flavonoid ,Extraction (chemistry) ,Horticulture ,chemistry.chemical_compound ,Phytochemical ,Polyphenol ,Response surface methodology ,Food Science - Abstract
This study was designed to optimize ethanol extraction process of unfertilized corn silk (UCS) to maximize phytochemical contents and bioactivities. The response surface methodology (RSM) with central composite design (CCD) was employed to obtain the optimal extraction conditions. The influence of ethanol concentration, extraction temperature and extraction time on total polyphenol contents, total flavonoid contents, maysin contents, 2,2-diphenyl-1- picrylhydrazyl(DPPH) radical scavenging activities and tyrosinase inhibition were analyzed. For all dependable variables, the most significant factor was ethanol concentration followed by extraction temperature and extraction time. The following optimum conditions were determined by simultaneous optimization of several responses with the Derringer’s desirability function using the numerical optimization function of the Design-Expert program: ethanol concentration 80.45%, extraction temperature 53.49°C, and extraction time 4.95 h. Under these conditions, the predicted values of total polyphenol contents, total flavonoid contents, maysin contents, DPPH radical scavenging activity and tyrosinase inhibition were 2758.74 μg GAE/g dried sample, 1520.81 μg QUE/g dried sample, 810.26 mg/100g dried sample, 56.86% and 43.49%, respectively, and the overall desirability (D) was 0.74.
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- 2017
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26. Effects of Microencapsulation Using Maltodextrin and/or Cyclodextrin on Water Absorption and Bioactivity of Corn Silk Extract
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Myung-Hwan Kim, Sun Lim Kim, Woo Kyoung Kim, Ji Eun Lim, In Gyeong Lee, and Hyeon Jung Kang
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chemistry.chemical_classification ,chemistry.chemical_compound ,Absorption of water ,Cyclodextrin ,Biochemistry ,Chemistry ,Corn silk ,Food science ,Maltodextrin ,Food Science - Published
- 2017
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27. Physiological and proteomic analyses of Korean F1 maize (Zea mays L.) hybrids under water-deficit stress during flowering
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Beom-Young Son, Seong-Bum Baek, Weon-Tai Jeon, Jin-Seok Lee, Sang Gon Kim, Hwan Hee Bae, Seong-Hyu Shin, Sun-Lim Kim, and Jung-Tae Kim
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Gel electrophoresis ,Stomatal conductance ,Spots ,Chemistry ,Protein subunit ,Organic Chemistry ,Botany ,Plant physiology ,Dry matter ,Photosynthesis ,General Biochemistry, Genetics and Molecular Biology ,Hybrid - Abstract
Despite the relevance of drought stress, the regulation of gene expression, protein accumulation, and plant physiology under water-deficit stress is not well understood in Korean F1 maize (Zea mays L.) hybrids. In this study, we investigated the effect of water deficit on the F1 maize hybrids, Ilmichal (Ilmi) and Gwangpyeongok (GPOK), by withholding water for 10 days during flowering. Water deficit severely reduced the relative water content, area, SPAD values, and stomatal conductance of leaves, stem length, and the dry matter content of aerial tissues in drought-stressed plants of both hybrids. However, the dry matter content of roots was reduced only in GPOK. Two-dimensional gel electrophoresis identified 24 spots representing proteins accumulated to differential levels in well-watered and drought-stressed plants of both hybrids. Further analysis of protein spots using matrix assisted laser desorption ionization–time of flight mass spectrometry and protein database searches revealed that nine proteins were involved in carbohydrate metabolism, seven in stress response, and two in photosynthesis. Among these proteins, delta 3,5-delta 2,4-dienoyl-CoA isomerase (spot 8) and bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase 2 (spot 23) were present only in GPOK, whereas NAD-dependent epimerase/dehydratase (spot 13), NAD(P)H-quinone oxidoreductase subunit 2 A (spot 24), and an uncharacterized protein (spot 19) were present only in Ilmi, in response to water-deficit stress. Semi-quantitative reverse transcription PCR analysis showed that the transcript levels of most of the genes encoding these proteins correlated well with their protein levels, suggesting that water deficit affects gene transcription in F1 maize hybrids at the flowering stage.
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- 2019
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28. First Report of Bacterial Black Spot Disease in Watermelon Caused by Acidovorax valerianellae in Korea
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You-Kyoung Han, Su-Yeon Lee, Koeun Han, J.H. Lee, and Sun-Lim Kim
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food.ingredient ,biology ,Citrullus lanatus ,Spots ,Plant Science ,biology.organism_classification ,Horticulture ,food ,Seedling ,Acidovorax valerianellae ,Botany ,Agar ,Agronomy and Crop Science ,Cucurbitaceae ,Bacteria ,Black spot - Abstract
Watermelon (Citrullus lanatus (Thunb.) Matsum. & Nakai), an important member of the Cucurbitaceae family, is cultivated on 21,000 ha that produces 850,000 t in Korea. In April 2011, we received grafted watermelon with necrotic leaf spots from a commercial watermelon grower in Andong, Korea. Black spots were observed on cotyledons of the plants in seedbeds, and approximately 9% of watermelon plants were infected with the disease. Initial symptoms on the seedling were black, greasy spots sometimes surrounded by a halo of discoloration. Younger leaves usually showed symptoms later than cotyledons. Bacteria isolated from the infected plants were gram-negative, motile, straight rods with a single flagellum and 0.84 to 0.89 μm wide and 1.54 to 1.69 μm long. They formed rough colonies with a white-cream color after 48 h of incubation on Luria-Bertani (LB) agar at 28°C. Colonies of isolates were nonfluorescent, smooth, and white on King's medium B. On YBGA (7 g of yeast extract, 7 g of bactopeptone, 7 g of glucose, 15 g of agar, 1,000 ml of distilled water; pH 7.2) colonies are circular, raised with an entire margin, and white to cream. Pathogenicity tests were conducted with potted, greenhouse-grown watermelon plants. Bacterial colonies grown on LB medium for 48 h at 28°C were suspended in sterile distilled water, and the suspension (1.0 × 108 CFU/ml) was infiltrated into mesophyll of watermelon leaves with a syringe as previously described (2). Inoculated plants were maintained at 28°C and 90% relative humidity in a growth chamber with a daily 12-h photoperiod of fluorescent light. Five plants were used for inoculation. Sterilized distilled water was used as a control. The bacterial isolates induced necrosis in the infiltrated area within 3 to 5 days. Typical water-soaked spots appeared after 3 days of incubation and became gray to black after 6 days. The bacterium was successfully reisolated from the diseased lesions, thus completing Koch's postulates. A cell suspension (50 μl of 1 × 106 CFU/ml) was infiltrated with a syringe into the intercellular spaces of tobacco leaves to determine the hypersensitive reaction (HR). A typical HR developed 20 h after leaf infiltration. The 16S rDNA region of the isolates, amplified by using universal PCR primers, shared 99% sequence identity with an Acidovorax valerianellae strain (GenBank Accession No. AJ431731) (1). The resulting sequences of 1,424 bp were deposited in GenBank (Accession No. JN983471). The isolates we obtained in this study clustered with A. valerianellae on a phylogenetic tree generated by the neighbor-joining method implemented in MEGA Version 4.1. In the Biolog Microbial Identification System, Version 4.2 (Biolog Inc., Hayward, CA), all isolates were 63 to 77% similar with a match probability of 100% to A. konjaci. Fatty acid composition analysis of isolates based on the MIDI Library version TSBA 5.0 and Library Generation system software version 5.0 showed that the isolates were 52 and 72% similar to an Acidovorax sp., respectively. To our knowledge, this is the first report of bacterial black spot disease in watermelon caused by A. valerianellae in Korea. A. valerianellae is a causal agent of bacterial black spot in corn salad and is transmitted by inoculated seeds (3). Further studies are required to determine whether it is seed transmitted in watermelon. References: (1) L. Gardan et al. Int. J. Syst. Evol. Microbiol. 53:795, 2003. (2) C. Grondeau et al. Plant Pathol. 56:302, 2007. (3) C. Grondeau et al. Plant Pathol. 58:846, 2009.
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- 2019
29. Germinated soy germ extract ameliorates obesity through beige fat activation
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Sik-Won Choi, Han-Jun Kim, Hyo Sung Kim, Chan-Woong Choi, Eun-Ji Choi, Sun Hee Do, Woo-Duck Seo, and Sun-Lim Kim
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0301 basic medicine ,medicine.medical_specialty ,Cell Survival ,Adipose tissue ,Diet, High-Fat ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,In vivo ,Lipid droplet ,Internal medicine ,Adipocyte ,3T3-L1 Cells ,medicine ,Lipolysis ,Animals ,Obesity ,030109 nutrition & dietetics ,Triglyceride ,Plant Extracts ,General Medicine ,Adipose Tissue, Beige ,Saponins ,medicine.disease ,Mice, Inbred C57BL ,030104 developmental biology ,Endocrinology ,chemistry ,Gene Expression Regulation ,lipids (amino acids, peptides, and proteins) ,Female ,Soybeans ,medicine.symptom ,Weight gain ,Food Science - Abstract
Obesity is a worldwide public health concern requiring safe and effective strategies. Recent studies suggest that bioactive compounds from soybeans have beneficial effects on weight loss and reducing fat accumulation. However, despite the biochemical and nutritional changes during germination, the biological effects of germinated soy germ have not been fully investigated. In this article, germinated soy germ extract (GSGE) was evaluated as a potential treatment option for obesity using 3T3-L1 pre-adipocyte and high-fat diet (HFD)-induced obese mice. In vitro studies demonstrated that GSGE suppressed the differentiation of 3T3-L1 cells into mature adipocytes, along with reductions in lipid accumulation and lipid droplet formation. In vivo studies also showed that a daily dose of 1 mg kg-1 of GSGE reduced weight gain, adipocyte area, serum triglyceride, and LDL-cholesterol in HFD-fed mice. The GSGE treatment promoted browning, which was associated with increased UCP1 expression in vitro and in vivo. In addition, GSGE treatment induced beige fat activation by upregulation of lipolysis and beta-oxidation. Furthermore, gene and protein expression levels of endocannabinoid system-related factors such as NAPE-PLD, FAAH, DAGL-α, and CB2 were altered along with browning and beige fat activation by GSGE. The present study indicates that GSGE effectively inhibits lipid accumulation and promotes beige fat transition and activation. Therefore, we suggest that GSGE treatment could be a promising strategy for the prevention of obesity by promoting weight loss, reducing fat accumulation, and improving obesity-related metabolic disorders.
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- 2019
30. Variation of Cyanidin-3-Glucoside in the Pigmented Rice as Affected by the Rice Cultivation Types
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Kyu seong Lee, Byong Won Lee, Yong-Jae Won, Hyeonmi Ham, Yu Young Lee, Yong-Hwan Choi, Sun Lim Kim, and Ji-Young Park
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Horticulture ,Variation (linguistics) ,Cyanidin-3-glucoside ,Biology - Published
- 2016
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31. Characterization of Chemical Compositions on Kernel of Korean Maize Hybrids
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Mi-Ra Yoon, Sun-Lim Kim, Induck Choi, Mi-Jung Kim, Beom-Young Son, Kang-Su Kwak, Jieun Kwak, Gun-Ho Jung, and Choon-Ki Lee
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Kernel (statistics) ,Biology ,Biological system ,Hybrid - Published
- 2016
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32. Classification of 31 Korean Wheat (Triticum aestivum L.) Cultivars Based on the Chemical Compositions
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Sun-Lim Kim, Chon-Sik Kang, Induck Choi, and Choon-Kee Lee
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0301 basic medicine ,030109 nutrition & dietetics ,Nutrition and Dietetics ,Bran ,New Variety ,Wheat flour ,04 agricultural and veterinary sciences ,Biology ,040401 food science ,Endosperm ,Crop ,Research Note ,03 medical and health sciences ,0404 agricultural biotechnology ,Agronomy ,chemical composition ,Composition (visual arts) ,Germ ,Cultivar ,wheat cultivar ,whole wheat meal ,cluster analysis ,Food Science - Abstract
Whole grain wheat flour (WGWF) is the entire grain (bran, endosperm, and germ) milled to make flour. The WGWF of 31 Korean wheat (Triticum aestivum L.) cultivars were analyzed for the chemical compositions, and classified into groups by hierarchical cluster analysis (HCL). The average composition values showed a substantial variation among wheat varieties due to different wheat varieties. Wheat cv. Shinmichal1 (waxy wheat) had the highest ash, lipid, and total dietary fiber contents of 1.76, 3.14, and 15.49 g/100 g, respectively. Using HCL efficiently classified wheat cultivars into 7 clusters. Namhae, Sukang, Gobun, and Joeun contained higher protein values (12.88%) and dietary fiber (13.74 %). Regarding multi-trait crop breeding, the variation in chemical compositions found between the clusters might be attributed to wheat genotypes, which was an important factor in accumulating those chemicals in wheat grains. Thus, once wheat cultivars with agronomic characteristics were identified, those properties might be included in the breeding process to develop a new variety of wheat with the trait.
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- 2016
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33. Comprehensive analysis of genomic variation of Hop stunt viroid
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Sun-Lim Kim, Won Kyong Cho, Sang-Min Kim, Sen Lian, Hyosub Chu, Jin Kyong Cho, Hoseong Choi, Bong Choon Lee, Yeonhwa Jo, and Hangil Kim
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0301 basic medicine ,Genetics ,Phylogenetic tree ,Sequence analysis ,Viroid ,Plant Science ,Horticulture ,Biology ,biology.organism_classification ,Genome ,03 medical and health sciences ,030104 developmental biology ,Hop stunt viroid ,Sequence variation ,Agronomy and Crop Science ,Sequence (medicine) - Abstract
Hop stunt viroid (HSVd) infects a wide range of plants. In this study, we assembled de novo two HSVd genomes from the transcriptome of an apricot species. To examine HSVd variation in a single tree, we sequenced 70 HSVd genomes from unique apricot and plum trees and identified 11 HSVd variants. In addition, we analysed all known 572 HSVd sequences and identified 382 non-redundant HSVd variants. Phylogenetic analysis identified five groups of the 382 HSVd variants. Furthermore, we generated a consensus HSVd sequence by averaging across all 382 sequences. Comparative sequence analysis identified several regions showing sequence variation, while the terminal left region of the rod-like structure was highly conserved.
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- 2016
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34. Elucidation of phenolic antioxidants in barley seedlings (Hordeum vulgare L.) by UPLC-PDA-ESI/MS and screening for their contents at different harvest times
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Mi Jin Park, Jin Hwan Lee, Heung Joo Yuk, Kwang-Sik Lee, Hyung Won Ryu, Woo Duck Seo, Sun-Lim Kim, and Sik-Won Choi
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DPPH ,Isoorientin ,Phenolic compound ,Isovitexin ,Medicine (miscellaneous) ,Barley seedlings ,chemistry.chemical_compound ,0404 agricultural biotechnology ,Harvest time ,Antioxidant activity ,TX341-641 ,Food science ,Orientin ,chemistry.chemical_classification ,Nutrition and Dietetics ,Chromatography ,ABTS ,Chemistry ,Saponarin ,UPLC-PDA-ESI/MS ,Nutrition. Foods and food supply ,04 agricultural and veterinary sciences ,Hydroxycinnamic acid ,040401 food science ,NMR ,Hordeum vulgare ,Food Science - Abstract
The changes in phenolic and antioxidant capacities of seedlings of various barley cultivars through four different harvest times were investigated. Ten phenolics were characterised as hydroxycinnamic acid, orientin, isoorientin, and isovitexin derivatives using UPLC-PDA-ESI/MS and NMR. In particular, lutonarin (2) and saponarin (3) were the predominant constituents (71–75%) with significant differences in cultivars and harvest times. The highest average total phenolic content was found as 2671.8 mg/100 g on 23 days after the sowing, whereas the lowest was 1400.8 mg/100 g on 56 days. The radical scavenging abilities also exhibited considerable differences in 80% of methanol extracts (40 µg/mL), depending upon the phenolic contents. Interestingly, isoorientin (5) and orientin (6) possessed potent antioxidant effects with IC50 values of 20.7 ± 1.1 and 27.5 ± 7.3 µM (DPPH) and 5.7 ± 0.3 and 8.2 ± 0.3 µM (ABTS), respectively. These results may be contributed to enhancing the value of barley as a functional food ingredient and dietary supplement.
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- 2016
35. Suppression of Akt-HIF-1α signaling axis by diacetyl atractylodiol inhibits hypoxia-induced angiogenesis
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Hyun Young Kim, Kie-In Park, Jin Hwan Lee, Mi Ja Lee, Sik-Won Choi, Hyeon Jung Kang, Kwang-Sik Lee, Hye Kyoung Shin, Woo Duck Seo, and Sun-Lim Kim
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Vascular Endothelial Growth Factor A ,0301 basic medicine ,Angiogenesis ,Blotting, Western ,Down-Regulation ,Neovascularization, Physiologic ,HIF-1α ,Akt-HIF-1 alpha signaling ,Diacetyl atractylodiol ,HIF-1alpha ,Hypoxia ,Real-Time Polymerase Chain Reaction ,Biochemistry ,Chorioallantoic Membrane ,03 medical and health sciences ,Human Umbilical Vein Endothelial Cells ,Humans ,Phosphorylation ,Molecular Biology ,Protein kinase B ,Tube formation ,030102 biochemistry & molecular biology ,Akt/PKB signaling pathway ,Chemistry ,Akt-HIF-1α signaling ,Atractylodes ,Cobalt ,General Medicine ,Hypoxia-Inducible Factor 1, alpha Subunit ,Chorioallantoic membrane ,Vascular endothelial growth factor A ,Hypoxia-inducible factors ,Cancer research ,Enediynes ,Signal transduction ,Proto-Oncogene Proteins c-akt ,HeLa Cells ,Signal Transduction ,Research Article - Abstract
Hypoxia-inducible factor (HIF)-1α is a key regulator associated with tumorigenesis, angiogenesis, and metastasis. HIF-1α regulation under hypoxia has been highlighted as a promising therapeutic target in angiogenesis-related diseases. Here, we demonstrate that diacetyl atractylodiol (DAA) from Atractylodes japonica (A. japonica) is a potent HIF-1α inhibitor that inhibits the Akt signaling pathway. DAA dose-dependently inhibited hypoxia-induced HIF-1α and downregulated Akt signaling without affecting the stability of HIF-1α protein. Furthermore, DAA prevented hypoxia-mediated angiogenesis based on in vitro tube formation and in vivo chorioallantoic membrane (CAM) assays. Therefore, DAA might be useful for treatment of hypoxia-related tumorigenesis, including angiogenesis. [BMB Reports 2016; 49(9): 508-513].
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- 2016
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36. Single Cross Maize Hybrid with Lodging Tolerance and Flint-like for Grain, 'Daanok'
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Jin-Seok Lee, Beom-Young Son, Hwan-Hee Bae, Young-Up Kwon, Seong-Bum Baek, Sun-Lim Kim, Jung-Tae Kim, Ja-Hwan Ku, Seong-Hyu Shin, and Gun-Ho Jung
- Subjects
Yield (engineering) ,Agronomy ,Biology - Published
- 2016
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37. Change of Soil Properties and Crop Productivity by Paddy-Upland Rotationin Newly Reclaimed Tidal land
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Su-Hwan Lee, Jin Jung, Jae-Hyeok Jeong, Young-Doo Kim, Yang-Yeol Oh, Sanghun Lee, Weon-Young Choi, Jin-Hee Ryu, Sun Kim, Kil-Yong Kim, Jong-Cheol Ko, Jae Hyun Kim, Sun-Lim Kim, Hui-Su Bae, and Young-Joo Kim
- Subjects
0106 biological sciences ,Agronomy ,Crop production ,Environmental science ,Soil properties ,04 agricultural and veterinary sciences ,0405 other agricultural sciences ,01 natural sciences ,Crop productivity ,040501 horticulture ,010606 plant biology & botany - Published
- 2016
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38. Detection and Distribution of Fungal VectorP. graminis of BaYMV
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Sun-Lim Kim, Sang-Min Kim, Juyoung Bae, Joon-Hwan Lee, Bong-Choon Lee, Kangmin Kim, and Ji-Eun Ra
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Distribution (number theory) ,Biology ,Biological system - Published
- 2016
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39. Antioxidative and Protective Effects of Corn Silk (Zea mays L.) Extract on Human HaCaT Keratinocyte
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Hyun Young Kim, Sun-Lim Kim, and Woo-Duck Seo
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0301 basic medicine ,Antioxidant ,Traditional medicine ,Corn silk ,medicine.medical_treatment ,Biology ,Zea mays ,03 medical and health sciences ,HaCaT ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Botany ,medicine ,Keratinocyte - Abstract
본 연구는 옥수수수염 조추출물과 메이신 함량이 높은 고분획물(NICS-1, NICS-2)의 항산화 활성과 피부 각질형성세포의 세포손상 억제활성을 구명하여 옥수수의 부산물인 수염을 이용하여 기능성식품 및 화장품으로 개발할 수 있는 기초자료를 얻고자 수행하였한 결과는 옥수수수염 유래 주정 추출물과 메이신이 고함유된 ...
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- 2016
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40. Changes of the Salt Movement by Types of Mulch of Upland Soil in Saemangeum Reclaimed Land
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Ha-Cheol Hong, Jin-Hee Ryu, Young-Joo Kim, Sanghun Lee, Jin Jung, Su-Hwan Lee, Yang-Yeol Oh, Young-Doo Kim, Sun Kim, and Sun-Lim Kim
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chemistry.chemical_classification ,Agronomy ,Land reclamation ,chemistry ,Salt (chemistry) ,Environmental science ,Mulch - Published
- 2016
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41. Characteristics of Water Quality at Freshwater Lakes and Inflow Streams in West Reclaimed Lands of South Korea
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Su-Hwan Lee, Young-Doo Kim, Ha-Cheol Hong, Jae Hyun Kim, Sun-Lim Kim, Yang-Yeol Oh, Young-Joo Kim, Jung Jin, Jin-Hee Ryu, and Sun Kim
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Hydrology ,Environmental science ,Water quality ,STREAMS ,Inflow - Published
- 2016
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42. The complete genomic sequence of a tentative new polerovirus identified in barley in South Korea
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Do Yeon Kwak, Davaajargal Igori, Sun Lim Kim, Ran Hee Yoo, Jae Sun Moon, Sang-Min Kim, Fumei Zhao, Seungmo Lim, and Bong Choon Lee
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0301 basic medicine ,food.ingredient ,Molecular Sequence Data ,Genomics ,Genome, Viral ,Biology ,Genome ,law.invention ,Polerovirus ,Open Reading Frames ,03 medical and health sciences ,food ,Phylogenetics ,law ,Virology ,Republic of Korea ,Phylogeny ,Polymerase chain reaction ,Plant Diseases ,Genetics ,Base Sequence ,Nucleic acid sequence ,RNA ,Hordeum ,General Medicine ,Luteoviridae ,Open reading frame ,030104 developmental biology - Abstract
The complete nucleotide sequence of a new barley polerovirus, tentatively named barley virus G (BVG), which was isolated in Gimje, South Korea, has been determined using an RNA sequencing technique combined with polymerase chain reaction methods. The viral genomic RNA of BVG is 5,620 nucleotides long and contains six typical open reading frames commonly observed in other poleroviruses. Sequence comparisons revealed that BVG is most closely related to maize yellow dwarf virus-RMV, with the highest amino acid identities being less than 90 % for all of the corresponding proteins. These results suggested that BVG is a member of a new species in the genus Polerovirus.
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- 2016
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43. Spatio-temporal Distribution Characteristics of the Soil Salinity in Saemangeum Gyehwa Newly Reclaimed Land
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Youngdoo Kim, Jin-Hee Ryu, Ha-Cheol Hong, Su-Hwan Lee, Yang-Yeol Oh, Young-Joo Kim, Sun-Lim Kim, Jin Jung, and Sun Kim
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0106 biological sciences ,0301 basic medicine ,Hydrology ,03 medical and health sciences ,Soil salinity ,Land reclamation ,business.industry ,010608 biotechnology ,030106 microbiology ,Environmental science ,Distribution (economics) ,business ,01 natural sciences - Published
- 2016
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44. Effects of Straw Mulching on Soil Physicochemical Properties in Saemangeum Reclaimed Land
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Jin-Hee Ryu, Youngdoo Kim, Jong-Gook Kang, Sun Kim, Sun-Lim Kim, Yang-Yeol Oh, Ha-Cheol Hong, Su-Hwan Lee, and Young-Joo Kim
- Subjects
Soil salinity ,Soil series ,Agronomy ,Soil texture ,Chemistry ,Soil organic matter ,Field experiment ,Loam ,Straw ,Mulch - Abstract
To identify the effects of straw mulching on soil physicochemical properties in reclaimed saline soil, field experiment was conducted for 3 years (2010~2012) in Saemangeum reclaimed land. Soil series of the experimental field was Munpo and soil texture was fine sandy loam. The experiment was conducted at a field with EC of 2.4 dS m -1 (field Ⅰ) and the other field with EC of 5.6 dS m -1 (field Ⅱ). Each experimental field was treated with rye straw incorporation, mulching with rye straw and control. In 2010 rye straw produced from other field was used for the experiment and in 2011~2012 rye straw cultivated at the same experimental field was used. After rye straw application, soybean was cultivated. After 3 years field experiment, by rye straw incorporation, soil salinity decreased from 2.4 dS m -1 to 0.6 dS m -1 at fieldⅠ but increased from 5.6 dS m -1 to 7.6 dS m -1 at field Ⅱ. By mulching with rye straw soil salinity decreased from 2.4 dS m -1 to 0.5 dS m -1 at field Ⅰ and also decreased from 5.6 dS m -1 to 0.5 dS m -1 at field Ⅱ. By rye straw incorporation and mulching soil organic matter increased from 2 g kg -1 to 4 g kg -1 . At field Ⅰ yields of soybean were similar between rye straw incorporation and mulching but at field Ⅱ yield of soybean increased apparently by mulching with rye straw compared to rye straw incorporation and control.
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- 2016
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45. Diastatic Power and Chemical Composition in Malted Barley Prepared with Korean Covered Barley
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Hyun-Joong Kang, Mi-Ja Lee, Yang-Kil Kim, Woo-Duck Suh, Induck Choi, Hyun Young Kim, and Sun-Lim Kim
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Chemistry ,Food science ,Chemical composition ,Food Science - Published
- 2016
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46. SAT0214 ULTRASONOGRAPHIC CHANGES OF SALIVARY GLANDS IN PRIMARY SJOGREN’S SYNDROME: A LONGITUDINAL PROSPECTIVE STUDY
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H.-R. Kim, Kyung-Ae Lee, Sun-Lim Kim, and S.-H. Lee
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medicine.medical_specialty ,Salivary gland ,business.industry ,Immunology ,Hypervascularity ,Gastroenterology ,General Biochemistry, Genetics and Molecular Biology ,Rheumatology ,medicine.anatomical_structure ,Interquartile range ,Internal medicine ,Sicca syndrome ,Major Salivary Gland ,medicine ,Immunology and Allergy ,Rituximab ,business ,Prospective cohort study ,medicine.drug - Abstract
Background:In the diagnosis of primary Sjogren’ syndrome (SS), salivary gland ultrasound is useful tool. Until now, there is no data for ultasonographic changes of major salivary glands over time.Objectives:This study aimed to evaluate the changes in abnormalities of salivary gland ultrasound (SGUS) over time in patients with pSS.Methods:Patients with pSS (n=70) and idiopathic sicca syndrome (n=18) underwent SGUS twice at baseline and 2 years later. The semi-quantitative SGUS score (0-48) was used, which comprises five parameters: parenchymal echogenicity, homogeneity, hypoechoic areas, hyperechogenic reflections, and clearness of posterior borders. The intraglandular power Doppler signal (PDS) was also assessed. The changes of these SGUS variables were compared in patients with pSS and idiopathic sicca syndrome.Results:The median (interquartile range) total SGUS scores at baseline was 27 (14) in patients with and 4 (3) in those with idiopathic sicca syndrome (pp=0.013 andp=0.011, respectively). Homogeneity and hypoechoic areas were the domain to show statistically significant progression of SGUS scores. None of the SGUS scores changed significantly in the patients with idiopathic sicca syndrome. In patients with pSS, baseline and follow-up PDS sum scores of four salivary glands were significant higher in worsening SGUS group (n=13) than no change/improvement SGUS group (n=55/2).Conclusion:The structural abnormalities in major salivary glands assessed using SGUS scores progressed significantly in patients with pSS. In pSS group, 18.6% patients had worsening SGUS scores during 2 years. Intra-glandular hypervascularity was associated with worsening of salivary gland abnormalities.References:[1]Delli K, Dijkstra PU, Stel AJ, Bootsma H, Vissink A, Spijkervet FK. Diagnostic properties of ultrasound of major salivary glands in Sjogren’s syndrome: a meta-analysis. Oral diseases. 2015;21(6):792-800.[2]Jousse-Joulin S, Devauchelle-Pensec V, Cornec D, Marhadour T, Bressollette L, Gestin S, et al. Brief Report: Ultrasonographic Assessment of Salivary Gland Response to Rituximab in Primary Sjogren’s Syndrome. Arthritis & rheumatology (Hoboken, NJ). 2015;67(6):1623-8.[3]Gazeau P, Cornec D, Jousse-Joulin S, Guellec D, Saraux A, Devauchelle-Pensec V. Time-course of ultrasound abnormalities of major salivary glands in suspected Sjogren’s syndrome. Joint, bone, spine: revue du rhumatisme. 2018;85(2):227-32.[4]Lee KA, Lee SH, Kim HR. Diagnostic and predictive evaluation using salivary gland ultrasonography in primary Sjogren’s syndrome. Clinical and experimental rheumatology. 2018;36 Suppl 112(3):165-72.Acknowledgments: :This work was funded by the Konkuk University Medical Center Research Grant 2019.Disclosure of Interests:None declared
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- 2020
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47. THU0532 SEMIQUANTITATIVE ANALYSIS OF BONE SCINTIGRAPHY TO PREDICT SPINAL PROGRESSION IN EARLY AXIAL SPONDYLOARTHRITIS: A PILOT STUDY
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S.-H. Lee, Hong Ki Min, H.-R. Kim, and Sun-Lim Kim
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Syndesmophyte ,Sacroiliac joint ,medicine.medical_specialty ,Ankylosing spondylitis ,medicine.diagnostic_test ,Receiver operating characteristic ,business.industry ,Immunology ,medicine.disease ,Sacrum ,Enthesis ,General Biochemistry, Genetics and Molecular Biology ,medicine.anatomical_structure ,Rheumatology ,Bone scintigraphy ,Rheumatoid arthritis ,medicine ,Immunology and Allergy ,Radiology ,business - Abstract
Background:Axial spondyloarthritis (axSpA) is a chronic inflammatory disease that typically affects the axial joint and enthesis. Abnormal hyperplasia of osteoblasts in the vertebral corner is the underlying pathogenesis of syndesmophyte formation. Therefore, detecting abnormal osteoblast hyperactivity in the axial joints of patients with axSpA might be an attractive imaging modality to detect potential of spinal structural progression. Bone scintigraphy is used to evaluate the sites of active bone formation by detecting osteoblast activities and visualizing the whole skeleton at once. Therefore, bone scintigraphy is a theoretically ideal imaging modality to predict abnormal bone growth of axial joints in patients with axSpA.Objectives:To investigate whether bone scintigraphy with semiquantitative analysis in patients with early axial spondyloarthritis (axSpA) has prognostic value for predicting spinal structural progression of these patients after 2 years.Methods:The records of 53 patients with early axSpA who underwent baseline bone scintigraphy were reviewed retrospectively. The sacroiliac joint to sacrum (SIS) ratio of bone scintigraphy was measured for semiquantitative analysis, and modified Stoke Ankylosing Spondylitis Spinal Score (mSASSS) and syndesmophyte growth were calculated at baseline and after 2 years. Receiver operating characteristic (ROC) curve analysis was used to determine the cutoff for the SIS ratio of bone scintigraphy. To identify factors associated with significant spinal structural progression, univariate and multivariate logistic regression analyses were performed. Significant progression of spinal structural damage over 2 years was defined as an increase of mSASSS of at least 2 units for 2 years or new syndesmophyte growth/bridging of pre-existing syndesmophytes.Results:Multivariate regression analysis revealed obesity (P = 0.023), current smoking status (P = 0.012), and high SIS ratio of bone scintigraphy (P = 0.015) as independent predictors for worsening mSASSS by at least 2 units over 2 years. For new syndesmophyte growth/bridging of pre-existing syndesmophytes over 2 years, current smoking (P = 0.013), high SIS ratio of bone scintigraphy (P = 0.025), and pre-existing syndesmophyte (P = 0.036) were independent predictors.Conclusion:Semiquantitative analysis of bone scintigraphy (high SIS ratio) in patients with early axSpA may be useful for identifying patients at high risk for spinal structural progression after 2 years.References:[1]Gheita TA, Azkalany GS, Kenawy SA, Kandeel AA. Bone scintigraphy in axial seronegative spondyloarthritis patients: role in detection of subclinical peripheral arthritis and disease activity. Int J Rheum Dis 2015;18:553-9.[2]Kim JY, Choi YY, Kim CW, Sung YK, Yoo DH. Bone Scintigraphy in the Diagnosis of Rheumatoid Arthritis: Is There Additional Value of Bone Scintigraphy with Blood Pool Phase over Conventional Bone Scintigraphy? J Korean Med Sci 2016;31:502-9.Disclosure of Interests:None declared
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- 2020
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48. Characterization of Soybean Germinated Embryo Extract as an Estrogen Receptor Subtype-Selective and Tissue-Specific Modulator
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Hwasun Yang, Soolin Kim, Jimin Lee, Johann Sohn, Sujeong Park, Minsun Chang, Byoung Ha Ahn, Woo Duck Seo, Hyun Cheol Jeong, Sung-Jin Lee, Chang-Young Jang, Hyesoo Jeong, and Sun Lim Kim
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0301 basic medicine ,Selective Estrogen Receptor Modulators ,Tail ,Ovariectomy ,Uterus ,Medicine (miscellaneous) ,Estrogen receptor ,Germination ,Phytoestrogens ,Pharmacology ,Body Temperature ,Rats, Sprague-Dawley ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Oral administration ,medicine ,Animals ,Estrogen Receptor beta ,Humans ,Skin ,030109 nutrition & dietetics ,Nutrition and Dietetics ,Plant Extracts ,Embryo ,Biological activity ,Organ Size ,Isoflavones ,Saponins ,medicine.anatomical_structure ,chemistry ,030220 oncology & carcinogenesis ,Seeds ,Ovariectomized rat ,MCF-7 Cells ,Female ,Soybeans ,Menopause ,Phytotherapy - Abstract
Phytoestrogens possess beneficial effects in the management of menopausal symptoms with few side effects. Soybeans are major natural sources of isoflavones, with high estrogen receptor (ER)-β selectivity. The objective of this study therefore was to develop a solvent-mediated extraction method for soybean germinated embryos (SGEs) and to investigate the biological activities of the extract. Ethanolic extraction yielded the SGE extract (SGEE), which had a unique composition of biologically active aglycones and soyasaponins. SGEE showed a proliferative effect in MCF7 cells and ERβ-selective transcriptional activities in human embryonic kidney cells. In addition, oral administration of SGEE to ovariectomized rats resulted in the induction of ERβ and estrogen-responsive genes in the uterus and a decrease in tail skin temperature and uterus weight. Our data suggest that germination and ethanolic extraction are effective measures for producing isoflavone-rich food supplements, which may be useful as alternative menopausal hormone therapy.
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- 2018
49. Germinated soy germ with increased soyasaponin Ab improves BMP-2-induced bone formation and protects against in vivo bone loss in osteoporosis
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Kwang-Sik Lee, Han-Jun Kim, Chan-Woong Choi, Sun-Lim Kim, Sik-Won Choi, Shin-Hye Kim, Sun Hee Do, and Woo-Duck Seo
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0301 basic medicine ,medicine.medical_specialty ,Anabolism ,Ovariectomy ,Osteoporosis ,Bone Morphogenetic Protein 2 ,lcsh:Medicine ,Germination ,SMAD ,Bone morphogenetic protein 2 ,Article ,Cell Line ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Osteogenesis ,In vivo ,Internal medicine ,medicine ,Animals ,Humans ,lcsh:Science ,Osteoporosis, Postmenopausal ,Multidisciplinary ,biology ,Chemistry ,lcsh:R ,Saponins ,Alkaline Phosphatase ,medicine.disease ,RUNX2 ,Disease Models, Animal ,030104 developmental biology ,Endocrinology ,030220 oncology & carcinogenesis ,Seeds ,Osteocalcin ,biology.protein ,Alkaline phosphatase ,Female ,lcsh:Q ,Soybeans - Abstract
Osteoporosis is frequently induced following menopause, and bone fractures result in serious problems including skeletal deformity, pain, and increased mortality. Therefore, safe and effective therapeutic agents are needed for osteoporosis. This study aimed to clarify the bone protecting effects of germinated soy germ extracts (GSGE) and their mode of action. GSGE increased expression of alkaline phosphatase (ALP) and osteocalcin (OCL) by stimulating the expression of runt-related transcription factor 2 (Runx2) and osterix (Osx) through activation of Smad signaling molecules. Furthermore, germination of soy germ increased levels of nutritional components, especially soyasaponin Ab. The anabolic activity of soyasaponin Ab in GSGE was also evaluated. GSGE and soyasaponin Ab significantly protected against ovariectomy (OVX)-induced bone loss and improved bone-specific alkaline phosphatase (BALP) level in mouse serum. These in vitro and in vivo study results demonstrated that GSGE and soyasaponin Ab have potential as therapeutic candidate agents for bone protection in postmenopausal osteoporosis.
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- 2018
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50. Effect of Subsurface Drainage Systems on Soil Salinity at Saemangeum Reclaimed Tidal Land
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Soo-Hwan Lee, Ha-Chul Hong, Jong-Cheol Ko, Yang-Yeol Oh, Sun-Lim Kim, Hui-Su Bae, Jin-Hee Ryu, Sanghun Lee, and Yong-Doo Kim
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Salinity ,Hydrology ,Soil salinity ,Water table ,Economic return ,Environmental science ,Subsurface drainage ,Soil science ,Watertable control ,Soil salinity control ,Well drainage - Abstract
Soil salinity is the most critical factor for crop production at reclaimed tidal saline soil. Subsurface drainage system is recognized as a powerful tool for the process of desalinization in saline soil. The objective of this study was to investigate the effects of subsurface drainage systems on soil salinity and corn development at Saemangeum reclaimed tidal saline soil. The field experiments were carried out between 2012 and 2014 at Saemangeum reclaimed tidal land, Buan, Korea. Subsurface drainage was installed with four treatments: 1) drain spacing of 5 m, 2) drain spacing 10 m, 3) double layer with drain spacing 5 m and 10 m, and 4) the control without any treatment. The levels of water table showed shorter periods above 60 cm levels with the deeper installation of subsurface drainage system. Water soluble cations were significantly greater than exchangeable forms and soluble Na contents, especially in surface layer, were greatly reduced with the installation of subsurface drainage system. Subsurface drainage system improved biomass yield of corn and withering rate. Thus, the biomass yield of corn was improved and the shoot growth was more affected by salinity than was the root growth. The efficiency of double layer was not significant compared with the drain spacing of 5 m. The economic return to growers at reclaimed tidal saline soil was the greatest by the subsurface drainage system with 5 m drain spacing. Our results demonstrated that the installation of subsurface drainage system with drain space of 5 m spacing would be a best management practice to control soil salinity and corn development at Saemangeum reclaimed tidal saline soil.
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- 2015
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