1,292 results on '"Terpstra P"'
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2. Assessment of Abrupt Shifts in CMIP6 Models using Edge Detection
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Terpstra, Sjoerd, Falkena, Swinda K. J., Bastiaansen, Robbin, Bathiany, Sebastian, Dijkstra, Henk A., and von der Heydt, Anna S.
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Physics - Atmospheric and Oceanic Physics - Abstract
Research over the past decade has shown that multiple elements of the climate system, such as the Arctic Winter sea ice or the Amazon rainforest, could undergo abrupt shifts, but there are large uncertainties regarding their timing and spatial extent. In this study we investigated when and where abrupt shifts occur in the latest generation of climate models (CMIP6) under a scenario of a 1% annual increase in CO$_2$. We considered 82 ocean, atmosphere, and land variables across 57 models. We used a Canny edge detection method -- adapted for spatiotemporal dimensions -- to detect abrupt shifts occurring on time scales from years to decades. Then, we performed a connected component analysis to quantify the spatial extent of these shifts. The systems analyzed include the North Atlantic subpolar gyre, Tibetan Plateau, land permafrost, Amazon rainforest, Antarctic sea ice, monsoon systems, Arctic summer sea ice, Arctic winter sea ice, and Barents sea ice. With the exception of the monsoons systems, we found abrupt shifts in multiple models per system. We observed a considerable variation across the different CMIP6 models in terms of timing and spatial extent. Higher levels of global warming increased the risk of abrupt shifts in CMIP6 models. Even at a global warming level of 1.5 $^\circ \text{C}$, six out of ten studied climate subsystems showed abrupt shifts that cover a substantial area in multiple models.
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- 2024
3. Real-world routine diagnostic molecular analysis for TP53 mutational status is recommended over p53 immunohistochemistry in B-cell lymphomas
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de Haan, Lorraine M., de Groen, Ruben A. L., de Groot, Fleur A., Noordenbos, Troy, van Wezel, Tom, van Eijk, Ronald, Ruano, Dina, Diepstra, Arjan, Koens, Lianne, Nicolae-Cristea, Alina, Hartog, Wietske C. E. den, Terpstra, Valeska, Ahsmann, Els, Dekker, Tim J. A., Sijs-Szabo, Aniko, Veelken, Hendrik, Cleven, Arjen H. G., Jansen, Patty M., and Vermaat, Joost S. P.
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- 2024
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4. Generating Synthetic Computed Tomography for Radiotherapy: SynthRAD2023 Challenge Report
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Huijben, Evi M. C., Terpstra, Maarten L., Galapon, Arthur Jr., Pai, Suraj, Thummerer, Adrian, Koopmans, Peter, Afonso, Manya, van Eijnatten, Maureen, Gurney-Champion, Oliver, Chen, Zeli, Zhang, Yiwen, Zheng, Kaiyi, Li, Chuanpu, Pang, Haowen, Ye, Chuyang, Wang, Runqi, Song, Tao, Fan, Fuxin, Qiu, Jingna, Huang, Yixing, Ha, Juhyung, Park, Jong Sung, Alain-Beaudoin, Alexandra, Bériault, Silvain, Yu, Pengxin, Guo, Hongbin, Huang, Zhanyao, Li, Gengwan, Zhang, Xueru, Fan, Yubo, Liu, Han, Xin, Bowen, Nicolson, Aaron, Zhong, Lujia, Deng, Zhiwei, Müller-Franzes, Gustav, Khader, Firas, Li, Xia, Zhang, Ye, Hémon, Cédric, Boussot, Valentin, Zhang, Zhihao, Wang, Long, Bai, Lu, Wang, Shaobin, Mus, Derk, Kooiman, Bram, Sargeant, Chelsea A. H., Henderson, Edward G. A., Kondo, Satoshi, Kasai, Satoshi, Karimzadeh, Reza, Ibragimov, Bulat, Helfer, Thomas, Dafflon, Jessica, Chen, Zijie, Wang, Enpei, Perko, Zoltan, and Maspero, Matteo
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Physics - Medical Physics - Abstract
Radiation therapy plays a crucial role in cancer treatment, necessitating precise delivery of radiation to tumors while sparing healthy tissues over multiple days. Computed tomography (CT) is integral for treatment planning, offering electron density data crucial for accurate dose calculations. However, accurately representing patient anatomy is challenging, especially in adaptive radiotherapy, where CT is not acquired daily. Magnetic resonance imaging (MRI) provides superior soft-tissue contrast. Still, it lacks electron density information while cone beam CT (CBCT) lacks direct electron density calibration and is mainly used for patient positioning. Adopting MRI-only or CBCT-based adaptive radiotherapy eliminates the need for CT planning but presents challenges. Synthetic CT (sCT) generation techniques aim to address these challenges by using image synthesis to bridge the gap between MRI, CBCT, and CT. The SynthRAD2023 challenge was organized to compare synthetic CT generation methods using multi-center ground truth data from 1080 patients, divided into two tasks: 1) MRI-to-CT and 2) CBCT-to-CT. The evaluation included image similarity and dose-based metrics from proton and photon plans. The challenge attracted significant participation, with 617 registrations and 22/17 valid submissions for tasks 1/2. Top-performing teams achieved high structural similarity indices (>0.87/0.90) and gamma pass rates for photon (>98.1%/99.0%) and proton (>97.3%/97.0%) plans. However, no significant correlation was found between image similarity metrics and dose accuracy, emphasizing the need for dose evaluation when assessing the clinical applicability of sCT. SynthRAD2023 facilitated the investigation and benchmarking of sCT generation techniques, providing insights for developing MRI-only and CBCT-based adaptive radiotherapy., Comment: Preprint submitted to Medical Image Analysis
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- 2024
5. Fair coins tend to land on the same side they started: Evidence from 350,757 flips
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Bartoš, František, Sarafoglou, Alexandra, Godmann, Henrik R., Sahrani, Amir, Leunk, David Klein, Gui, Pierre Y., Voss, David, Ullah, Kaleem, Zoubek, Malte J., Nippold, Franziska, Aust, Frederik, Vieira, Felipe F., Islam, Chris-Gabriel, Zoubek, Anton J., Shabani, Sara, Petter, Jonas, Roos, Ingeborg B., Finnemann, Adam, Lob, Aaron B., Hoffstadt, Madlen F., Nak, Jason, de Ron, Jill, Derks, Koen, Huth, Karoline, Terpstra, Sjoerd, Bastelica, Thomas, Matetovici, Magda, Ott, Vincent L., Zetea, Andreea S., Karnbach, Katharina, Donzallaz, Michelle C., John, Arne, Moore, Roy M., Assion, Franziska, van Bork, Riet, Leidinger, Theresa E., Zhao, Xiaochang, Motaghi, Adrian Karami, Pan, Ting, Armstrong, Hannah, Peng, Tianqi, Bialas, Mara, Pang, Joyce Y. -C., Fu, Bohan, Yang, Shujun, Lin, Xiaoyi, Sleiffer, Dana, Bognar, Miklos, Aczel, Balazs, and Wagenmakers, Eric-Jan
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Mathematics - History and Overview ,Physics - Data Analysis, Statistics and Probability ,Statistics - Other Statistics - Abstract
Many people have flipped coins but few have stopped to ponder the statistical and physical intricacies of the process. In a preregistered study we collected $350{,}757$ coin flips to test the counterintuitive prediction from a physics model of human coin tossing developed by Diaconis, Holmes, and Montgomery (DHM; 2007). The model asserts that when people flip an ordinary coin, it tends to land on the same side it started -- DHM estimated the probability of a same-side outcome to be about 51%. Our data lend strong support to this precise prediction: the coins landed on the same side more often than not, $\text{Pr}(\text{same side}) = 0.508$, 95% credible interval (CI) [$0.506$, $0.509$], $\text{BF}_{\text{same-side bias}} = 2359$. Furthermore, the data revealed considerable between-people variation in the degree of this same-side bias. Our data also confirmed the generic prediction that when people flip an ordinary coin -- with the initial side-up randomly determined -- it is equally likely to land heads or tails: $\text{Pr}(\text{heads}) = 0.500$, 95% CI [$0.498$, $0.502$], $\text{BF}_{\text{heads-tails bias}} = 0.182$. Furthermore, this lack of heads-tails bias does not appear to vary across coins. Additional exploratory analyses revealed that the within-people same-side bias decreased as more coins were flipped, an effect that is consistent with the possibility that practice makes people flip coins in a less wobbly fashion. Our data therefore provide strong evidence that when some (but not all) people flip a fair coin, it tends to land on the same side it started. Our data provide compelling statistical support for the DHM physics model of coin tossing.
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- 2023
6. Rate-Induced Transitions in Networked Complex Adaptive Systems: Exploring Dynamics and Management Implications Across Ecological, Social, and Socioecological Systems
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Vasconcelos, Vítor V., Marquitti, Flávia M. D., Ong, Theresa, McManus, Lisa C., Aguiar, Marcus, Campos, Amanda B., Dutta, Partha S., Jovanelly, Kristen, Junquera, Victoria, Kong, Jude, Krueger, Elisabeth H., Levin, Simon A., Liao, Wenying, Lu, Mingzhen, Mittal, Dhruv, Pascual, Mercedes, Pinheiro, Flávio L., Rocha, Juan, Santos, Fernando P., Sloot, Peter, Chenyang, Su, Taylor, Benton, Tekwa, Eden, Terpstra, Sjoerd, Tilman, Andrew R., Watson, James R., Yang, Luojun, Yitbarek, Senay, and Zhan, Qi
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Physics - Physics and Society ,Computer Science - Multiagent Systems ,Mathematics - Dynamical Systems ,Nonlinear Sciences - Adaptation and Self-Organizing Systems ,37G, 37N, 91B, 91C, 91D, 91E, 92D, 92D25, 92D40, 92F, 93A, 93A14, 93A16 ,I.6.3 ,I.6.m ,J.3 ,J.4 ,J.m ,K.4.2 - Abstract
Complex adaptive systems (CASs), from ecosystems to economies, are open systems and inherently dependent on external conditions. While a system can transition from one state to another based on the magnitude of change in external conditions, the rate of change -- irrespective of magnitude -- may also lead to system state changes due to a phenomenon known as a rate-induced transition (RIT). This study presents a novel framework that captures RITs in CASs through a local model and a network extension where each node contributes to the structural adaptability of others. Our findings reveal how RITs occur at a critical environmental change rate, with lower-degree nodes tipping first due to fewer connections and reduced adaptive capacity. High-degree nodes tip later as their adaptability sources (lower-degree nodes) collapse. This pattern persists across various network structures. Our study calls for an extended perspective when managing CASs, emphasizing the need to focus not only on thresholds of external conditions but also the rate at which those conditions change, particularly in the context of the collapse of surrounding systems that contribute to the focal system's resilience. Our analytical method opens a path to designing management policies that mitigate RIT impacts and enhance resilience in ecological, social, and socioecological systems. These policies could include controlling environmental change rates, fostering system adaptability, implementing adaptive management strategies, and building capacity and knowledge exchange. Our study contributes to the understanding of RIT dynamics and informs effective management strategies for complex adaptive systems in the face of rapid environmental change., Comment: 25 pages, 4 figures, 1 box, supplementary information
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- 2023
7. How Good is Automatic Segmentation as a Multimodal Discourse Annotation Aid?
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Terpstra, Corbyn, Khebour, Ibrahim, Bradford, Mariah, Wisniewski, Brett, Krishnaswamy, Nikhil, and Blanchard, Nathaniel
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Computer Science - Computation and Language - Abstract
Collaborative problem solving (CPS) in teams is tightly coupled with the creation of shared meaning between participants in a situated, collaborative task. In this work, we assess the quality of different utterance segmentation techniques as an aid in annotating CPS. We (1) manually transcribe utterances in a dataset of triads collaboratively solving a problem involving dialogue and physical object manipulation, (2) annotate collaborative moves according to these gold-standard transcripts, and then (3) apply these annotations to utterances that have been automatically segmented using toolkits from Google and OpenAI's Whisper. We show that the oracle utterances have minimal correspondence to automatically segmented speech, and that automatically segmented speech using different segmentation methods is also inconsistent. We also show that annotating automatically segmented speech has distinct implications compared with annotating oracle utterances--since most annotation schemes are designed for oracle cases, when annotating automatically-segmented utterances, annotators must invoke other information to make arbitrary judgments which other annotators may not replicate. We conclude with a discussion of how future annotation specs can account for these needs., Comment: 7 pages, 1 figure, 2 tables, Proceedings of 19th Joint ISO-ACL Workshop on Interoperable Semantic Annotation (ISA 2023)
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- 2023
8. The change of epicardial adipose tissue characteristics and vulnerability for atrial fibrillation upon drastic weight loss
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Eva R. Meulendijks, Carolina Janssen-Telders, Elise L. Hulsman, Nick Lobe, Pietro Zappala, Marc M. Terpstra, Robin Wesselink, Tim A.C. de Vries, Rushd F. Al-Shama, Ruben N. van Veen, Steve M.M. de Castro, Claire E.E. de Vries, Leontien M.G. Nijland, R. Nils Planken, Sebastien P.J. Krul, and Joris R. de Groot
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Adipokines ,(epicardial) adipose tissue ,adipose remodelling ,bariatric surgery ,atrial fibrillation ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 ,Cytology ,QH573-671 ,Physiology ,QP1-981 - Abstract
Background Obesity increases the risk of atrial fibrillation (AF). We hypothesize that ‘obese’ epicardial adipose tissue (EAT) is, regardless of comorbidities, associated with markers of AF vulnerabilityMethods Patients >40y of age undergoing bariatric surgery and using
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- 2024
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9. Strong-ties and weak-ties rationalities: toward a mental model of the consequences of kinship intensity
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Kuang-Hui Yeh, Jane Terpstra Tong, Rachel Sing-Kiat Ting, Michael Harris Bond, Meetu Khosla, Virendra Pratap Yadav, Shashwat Shukla, Charles Liu, and Louise Sundararajan
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kinship intensity ,strong ties and weak ties ,rationality ,ecological niche ,values and beliefs ,habitus ,Psychology ,BF1-990 - Abstract
There is growing evidence of the connection between variations in kinship intensity and cross-cultural differences in psychological traits. Contributing to this literature on kinship intensity, we put forward a mental model to explain the enduring connection between ancestral niche and psychological traits. Our model posits that two primary orientations or dispositions—strong-ties and weak-ties rationalities—have co-evolved with our ancestral niches to perpetuate—by internalizing and reproducing—the social structure (such as preferences for certain attitudes, values, and beliefs) of the ancestral niche. The findings from 1,291 participants across four societies—China, India, Taiwan, and the United States—support our hypothesis that strong-ties (weak-ties) rationalities, when activated, will endorse strong-tie (weak-ties) values and beliefs. This proposed model contributes to the toolbox of cultural and cross-cultural psychology in a twofold sense: First, in addition to the index of kinship intensity, it offers a measure of kin-based rationality as another predictor of psychological traits; second, it renders intelligible the niche and rationality disconnect prevalent in the globalizing era.
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- 2024
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10. Efficacy of EUS-guided keyhole biopsies in diagnosing subepithelial lesions of the upper gastrointestinal tract
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Sen Verhoeve, Cynthia Verloop, Marco Bruno, Valeska Terpstra, Lydi Van Driel, Lars Perk, and Lieke Hol
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Endoscopic ultrasonography ,Subepithelial lesions ,Tissue diagnosis ,Quality and logistical aspects ,Performance and complications ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Published
- 2024
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11. Accelerated respiratory-resolved 4D-MRI with separable spatio-temporal neural networks
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Terpstra, Maarten, Maspero, Matteo, Verhoeff, Joost, and Berg, Cornelis van den
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Physics - Medical Physics ,Electrical Engineering and Systems Science - Image and Video Processing - Abstract
Background: Respiratory-resolved four-dimensional magnetic resonance imaging (4D-MRI) provides essential motion information for accurate radiation treatments of mobile tumors. However, obtaining high-quality 4D-MRI suffers from long acquisition and reconstruction times. Purpose: To develop a deep learning architecture to quickly acquire and reconstruct high-quality 4D-MRI, enabling accurate motion quantification for MRI-guided radiotherapy. Methods: A small convolutional neural network called MODEST is proposed to reconstruct 4D-MRI by performing a spatial and temporal decomposition, omitting the need for 4D convolutions to use all the spatio-temporal information present in 4D-MRI. This network is trained on undersampled 4D-MRI after respiratory binning to reconstruct high-quality 4D-MRI obtained by compressed sensing reconstruction. The network is trained, validated, and tested on 4D-MRI of 28 lung cancer patients acquired with a T1-weighted golden-angle radial stack-of-stars sequence. The 4D-MRI of 18, 5, and 5 patients were used for training, validation, and testing. Network performances are evaluated on image quality measured by the structural similarity index (SSIM) and motion consistency by comparing the position of the lung-liver interface on undersampled 4D-MRI before and after respiratory binning. The network is compared to conventional architectures such as a U-Net, which has 30 times more trainable parameters. Results: MODEST can reconstruct high-quality 4D-MRI with higher image quality than a U-Net, despite a thirty-fold reduction in trainable parameters. High-quality 4D-MRI can be obtained using MODEST in approximately 2.5 minutes, including acquisition, processing, and reconstruction. Conclusion: High-quality accelerated 4D-MRI can be obtained using MODEST, which is particularly interesting for MRI-guided radiotherapy., Comment: Code available at https://gitlab.com/computational-imaging-lab/modest
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- 2022
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12. Correction to: Are societal-level values still relevant measures in the twenty-first century businessworld? A 39-society analysis
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Ralston, David A., Russell, Craig J., Terpstra-Tong, Jane, Trevino, Len J., Ramburuth, Prem, Richards, Malika, Casado, Tania, de la Garza Carranza, María Teresa, Naoumova, Irina, Li, Yongjuan, Srinivasan, Narasimhan, Lenartowicz, Tomasz, Furrer, Olivier, Fu, Ping Ping, Pekerti, Andre, Dabic, Marina, Palmer, Ian, Kangasniemi, Maria, Szabo, Erna, Gutiérrez, Jaime Ruiz, Reynaud, Emmanuelle, Darder, Fidel León, Rossi, Ana Maria, von Wangenheim, Florian, Molteni, Mario, Starkus, Arunas, Mockaitis, Audra, Butt, Arif, Girson, Ilya, Dharmasiri, Ajantha S., Kuo, Min-Hsun, Dalgic, Tevfik, Thanh, Hung Vu, Moon, Yong-lin, Hallinger, Philip, Potocan, Vojko V., Nicholson, Joel, Milton, Laurie, Weber, Mark, Lee, Chay Hoon, Ansari, Mahfooz, Pla-Barber, Jose, Jesuino, Jorge C., Alas, Ruth, Danis, Wade, Chia, Ho-Beng, Fang, Yongqing, Elenkov, Detelin, and Brock, David M.
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- 2024
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13. Are societal-level values still relevant measures in the twenty-first century businessworld? A 39-society analysis
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Ralston, David A., Russell, Craig J., Terpstra-Tong, Jane, Trevino, Len J., Ramburuth, Prem, Richards, Malika, Casado, Tania, de la Garza Carranza, María Teresa, Naoumova, Irina, Li, Yongjuan, Srinivasan, Narasimhan, Lenartowicz, Tomasz, Furrer, Olivier, Fu, Ping Ping, Pekerti, Andre, Dabic, Marina, Palmer, Ian, Kangasniemi, Maria, Szabo, Erna, Ruiz Gutiérrez, Jaime, Reynaud, Emmanuelle, Darder, Fidel León, Maria Rossi, Ana, von Wangenheim, Florian, Molteni, Mario, Starkus, Arunas, Mockaitis, Audra, Butt, Arif, Girson, Ilya, Dharmasiri, Ajantha S., Kuo, Min-Hsun, Dalgic, Tevfik, Thanh, Hung Vu, Moon, Yong-lin, Hallinger, Philip, Potocan, Vojko V., Nicholson, Joel, Milton, Laurie, Weber, Mark, Lee, Chay Hoon, Ansari, Mahfooz, Pla-Barber, Jose, Jesuino, Jorge C., Alas, Ruth, Danis, Wade, Chia, Ho-Beng, Fang, Yongqing, Elenkov, Detelin, and Brock, David M.
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- 2024
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14. Isabel dos Guimarães Sá, Lisbeth Rodrigues (eds), The Confraternities of Misericórdia and the Portuguese Diasporas in the Early Modern Period. Leiden: Brill, 2023, 310 pp. ISBN 9789004547674
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Nicholas Terpstra
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History (General) ,D1-2009 - Published
- 2024
15. Severity and progression of structural hand OA is not associated with progression of structural knee OA: The IMI-APPROACH cohort
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Sietse E.S. Terpstra, Lotte A. van de Stadt, Francis Berenbaum, Francisco J. Blanco, Ida K. Haugen, Simon C. Mastbergen, Harrie Weinans, Mylène P. Jansen, Frits R. Rosendaal, and Margreet Kloppenburg
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Osteoarthritis ,Structural ,Knee ,Hand ,Diseases of the musculoskeletal system ,RC925-935 - Abstract
Objective: To investigate whether structural hand OA or its progression is associated with structural knee OA progression after two years in a population with symptomatic knee OA. Methods: We used baseline and two-year follow-up data from the IMI-APPROACH cohort. Symptomatic hand and knee OA were defined using ACR criteria. Radiographs of hands and knees were scored semi-quantitatively for osteophytes and joint space narrowing (JSN) following the OARSI atlas, and Kellgren-Lawrence (KL) scale. Knee images were also scored quantitatively with the Knee Image Digital Analysis (KIDA). Progression was defined as change above the minimal detectable change on patient level, except for KIDA (most affected knee compartment level). With logistic regression analyses the severity or progression of hand OA was associated with knee OA progression. Results: In 221 participants (mean age 66, 77% women, mean BMI 27.7, 19% hand OA), OA progression occurred in 18%–28%, and 9%–38% in hands and knees respectively, depending on features. Baseline structural hand OA features were not significantly associated with knee OA progression, except for hand osteophytes with KIDA osteophytes progression (odds ratio (OR) 1.03, 95% confidence interval (CI) 1.01–1.06). Progression of structural hand OA features was not significantly associated with knee OA progression, except for hand osteophyte or JSN progression, which was significantly associated with knee osteophyte progression (OR 0.44, 95%CI 0.22–0.84 and OR 0.43, 95%CI 0.18–0.94, respectively), and hand osteophyte progression for knee JSN (OR 2.51, 95%CI 1.15–5.48). Conclusions: In patients with symptomatic knee OA, no consistent associations between baseline structural hand OA or hand OA progression and knee OA progression were shown.
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- 2024
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16. Analysis of complications and revisions after spine surgery in 270 multiple myeloma patients with spinal involvement
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Zijlstra, H., Pierik, R. J., Crawford, A. M., Tobert, D. G., Wolterbeek, N., Oosterhoff, J. H. F., Delawi, D., Terpstra, W. E., Kempen, D. H. R., Verlaan, J. J., and Schwab, J. H.
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- 2023
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17. Building Collaborative Partnerships to Increase Postsecondary Education Opportunities for Students with Intellectual and Developmental Disabilities
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Horn, Annemarie L., Bean, Kimberly M., Layden, Selena J., Terpstra, Judith E., and Holloway, Karen C.
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Transitioning from high school to the next phase of life can be especially challenging for youth with intellectual and other developmental disabilities (IDD). Federal mandates are in place to provide individualized transition services to students with disabilities up to age 22; however, there is variability in the location of service delivery. A growing number of school districts have partnered with institutions of higher education (IHE) in an effort to enhance postsecondary education (PSE) opportunities for individuals with IDD who are between the ages of 18-21. While there are some differences in PSE programs, the core foundational component is constant across models: establishing and maintaining collaborative partnerships between school districts and IHE. This paper describes PSE program models and highlights the necessity to continue to build partnerships in an effort to expand PSE opportunities for young adults with IDD.
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- 2020
18. Validation of the SQUASH physical activity questionnaire using accelerometry: The NEO study
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Sietse E.S. Terpstra, Lotje A. Hoogervorst, Jeroen H.P.M. van der Velde, Renée de Mutsert, Lotte A. van de Stadt, Frits R. Rosendaal, and Margreet Kloppenburg
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Physical activity ,Patient reported outcomes ,Quality of life ,Epidemiology ,Accelerometer ,Diseases of the musculoskeletal system ,RC925-935 - Abstract
Objective: To investigate the construct validity of the SQUASH (Short QUestionnaire to ASsess Health-enhancing physical activity). Design: This is a cross-sectional analysis using baseline measurements from middle-aged participants in the Netherlands Epidemiology of Obesity (NEO) study. The SQUASH consists of questions on eleven physical activities investigating days per week, average duration per day and intensity, leading to a summed score in Metabolic Equivalent of Task hours (MET h) per week. To assess convergent validity, a Spearman's rank correlation between SQUASH and ActiHeart was calculated. To assess extreme group validity, three groups expected to differ in SQUASH total physical activity outcome were compared. For discriminative validity, a Spearman's rank correlation between SQUASH physical activity and participant height was investigated. Results: SQUASH data were available for 6550 participants (mean age 56 years, 44% men, mean BMI 26.3, 15% with knee OA, 13% with hand OA). Median physical activity (interquartile range) was 118 (76; 154) MET h/week according to SQUASH and 75 (58; 99) according to ActiHeart. Convergent validity was weak (rho = 0.20). For all three extreme group comparisons, a statistically significant difference was present. Discriminative validity was present (rho = 0.01). Compared with the reference quintile, those with a discrepancy SQUASH > ActiHeart and SQUASH
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- 2024
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19. Memory B-cell derived donor-specific antibodies do not predict outcome in sensitized kidney transplant recipients: a retrospective single-center study
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Dania Altulea, Joost C. van den Born, Arjan Diepstra, Laura Bungener, Dagmar Terpstra, Bouke G. Hepkema, Rosa Lammerts, Peter Heeringa, Sebastiaan Heidt, Henny Otten, Leon Reteig, Gonca E. Karahan, Stefan P. Berger, and Jan-Stephan Sanders
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memory B cells ,DSA ,polyclonal activation ,IgG production ,ABMR ,Immunologic diseases. Allergy ,RC581-607 - Abstract
BackgroundRepeated exposure to sensitizing events can activate HLA-specific memory B cells, leading to the production of donor-specific memory B cell antibodies (DSAm) that pose a risk for antibody-mediated rejection (ABMR) in kidney transplant recipients (KTRs). This single-center retrospective study aimed to identify DSAm and assess their association with outcomes in a cohort of KTRs with pretransplant serum donor-specific antibodies (DSA).MethodsWe polyclonally activated pretransplant peripheral blood mononuclear cells (PBMCs) from 60 KTRs in vitro, isolated and quantified IgG from the culture supernatant using ELISA, and analyzed the HLA antibodies of eluates with single antigen bead (SAB) assays, comparing them to the donor HLA typing for potential DSAm. Biopsies from 41 KTRs were evaluated for rejection based on BANFF 2019 criteria.ResultsAt transplantation, a total of 37 DSAm were detected in 26 of 60 patients (43%), of which 13 (35%) were found to be undetectable in serum. No significant association was found between pretransplant DSAm and ABMR (P=0.53). Similar results were observed in a Kaplan–Meier analysis for ABMR within the first year posttransplant (P=0.29). Additionally, MFI levels of DSAm showed no significant association with ABMR (P=0.28).ConclusionThis study suggests no significant association between DSAm and biopsy-proven clinical ABMR. Further prospective research is needed to determine whether assessing DSAm could enhance existing immunological risk assessment methods for monitoring KTRs, particularly in non-sensitized KTRs.
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- 2024
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20. One-press control: a tactile input method for pressure-sensitive computer keyboards
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de Jong, Staas, Jillissen, Jeroen, Kirkali, Dünya, de Rooij, Alwin, Schraffenberger, Hanna, and Terpstra, Arnout
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Computer Science - Human-Computer Interaction ,H.5.2 - Abstract
This work presents One-press control, a tactile input method for pressure-sensitive keyboards based on the detection and classification of pressing movements on the already held-down key. To seamlessly integrate the added control input with existing practices for ordinary computer keyboards, the redefined notion of virtual modifier keys is introduced. A number of application examples are given, especially to point out a potential for simplifying existing interactions by replacing modifier key combinations with single key presses. Also, a new class of interaction scenarios employing the technique is proposed, based on an interaction model named "What You Touch Is What You Get (WYTIWYG)". Here, the proposed tactile input method is used to navigate interaction options, get full previews of potential outcomes, and then either commit to one or abort altogether - all in the space of one key depress / release cycle. The results of user testing indicate some remaining implementation issues, as well as that the technique can be learned within about a quarter of an hour of hands-on operating practice time., Comment: The burden of executing this research project was shared among the authors, with all major choices made together in an open and democratic process. The concepts and algorithms that were decided upon for publication were by the first author, who also had writing duties. Further information is in the Acknowledgments
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- 2021
21. A recalibrated prediction model can identify level-1 trauma patients at risk of nosocomial pneumonia
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Kobes, T., Terpstra, A. M., IJpma, F. F. A., Leenen, L. P. H., Houwert, R. M., van Wessem, K. J. P., Groenwold, R. H. H., and van Baal, M. C. P. M.
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- 2023
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22. The Alchemy Project: A Personalized, Flexible, and Scalable Active Learning Platform to Help Foster Expert-Like Thinking in Chemistry
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W. Russ Algar, Noureddine Elouazizi, Jaclyn J. Stewart, E. Jane Maxwell, Tanya Tan, Zuxing Zhang, Robin Stoodley, José R. Rodríguez Núñez, Andrea S. Terpstra, and Jason G. Wickenden
- Abstract
To develop expertise, novice chemistry students require deliberate practice with immediate and thoughtful feedback. Whereas opportunities for practice are often abundant, opportunities for feedback tend to be much scarcer. To address this challenge, we collaborated with students to develop a flexible and scalable online platform called "Alchemy." Students interact with the software through a series of prompts and multiple-choice questions, receiving targeted feedback at each step. Each student can navigate a scenario differently, influenced by their prior knowledge and misconceptions. In design, scenarios are instructor-created graphs that model their expert-level thought process(es) and teaching experience. This graph format is a distinct and advantageous feature of Alchemy that supports linear, nonlinear, and cyclical progression through a concept or problem. Alchemy-based homework has been assigned in lecture and lab courses, at the sophomore and junior levels, with enrollments ranging from many tens to many hundreds of students. Approximately 80% of students rated Alchemy as very/extremely helpful to their learning, emphasizing the value of the step-by-step process and feedback. Alchemy is discussed in the contexts of other software platforms, its advantages and limitations, lessons learned in its initial deployments, and future directions for its development and usage.
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- 2022
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23. Genomic profiling of post-transplant lymphoproliferative disorders using cell-free DNA
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Nick Veltmaat, Yujie Zhong, Filipe Montes de Jesus, Geok Wee Tan, Johanna A. A. Bult, Martijn M. Terpstra, Pim G. N. J. Mutsaers, Wendy B. C. Stevens, Rogier Mous, Joost S. P. Vermaat, Martine E. D. Chamuleau, Walter Noordzij, Erik A. M. Verschuuren, Klaas Kok, Joost L. Kluiver, Arjan Diepstra, Wouter J. Plattel, Anke van den Berg, and Marcel Nijland
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Post-transplant lymphoproliferative disorder ,Cell-free DNA ,Genomic profiling ,Liquid biopsy ,Epstein–Barr virus ,Copy number variation ,Diseases of the blood and blood-forming organs ,RC633-647.5 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Diagnosing post-transplant lymphoproliferative disorder (PTLD) is challenging and often requires invasive procedures. Analyses of cell-free DNA (cfDNA) isolated from plasma is minimally invasive and highly effective for genomic profiling of tumors. We studied the feasibility of using cfDNA to profile PTLD and explore its potential to serve as a screening tool. We included seventeen patients with monomorphic PTLD after solid organ transplantation in this multi-center observational cohort study. We used low-coverage whole genome sequencing (lcWGS) to detect copy number variations (CNVs) and targeted next-generation sequencing (NGS) to identify Epstein-Barr virus (EBV) DNA load and somatic single nucleotide variants (SNVs) in cfDNA from plasma. Seven out of seventeen (41%) patients had EBV-positive tumors, and 13/17 (76%) had stage IV disease. Nine out of seventeen (56%) patients showed CNVs in cfDNA, with more CNVs in EBV-negative cases. Recurrent gains were detected for 3q, 11q, and 18q. Recurrent losses were observed at 6q. The fraction of EBV reads in cfDNA from EBV-positive patients was 3-log higher compared to controls and EBV-negative patients. 289 SNVs were identified, with a median of 19 per sample. SNV burden correlated significantly with lactate dehydrogenase levels. Similar SNV burdens were observed in EBV-negative and EBV-positive PTLD. The most commonly mutated genes were TP53 and KMT2D (41%), followed by SPEN, TET2 (35%), and ARID1A, IGLL5, and PIM1 (29%), indicating DNA damage response, epigenetic regulation, and B-cell signaling/NFkB pathways as drivers of PTLD. Overall, CNVs were more prevalent in EBV-negative lymphoma, while no difference was observed in the number of SNVs. Our data indicated the potential of analyzing cfDNA as a tool for PTLD screening and response monitoring.
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- 2023
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24. Treatment with inhaled antibiotics in bronchiectasis, side effects, and evaluation of the tolerance test; analysis from the BATTLE randomized controlled trial
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Lotte C. Terpstra, Daphne van derGeest, Inez Bronsveld, Harry Heijerman, and Wim G. Boersma
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airway hyperresponsiveness ,bronchiectasis ,side effects ,tobramycin inhalation solution ,tolerance test ,Diseases of the respiratory system ,RC705-779 - Abstract
Abstract Introduction Tobramycin inhalation solution (TIS) is a treatment option for patients with frequent exacerbations of bronchiectasis. A possible side effect of TIS is the development of chronic cough and bronchospasm, whereby the guidelines suggest a (in hospital) tolerance test with the first dose of TIS. However, data on respiratory adverse events are not consistent. In the present analysis from the BATTLE study (NCT02657473), we evaluated the added value of the tolerance test and aimed to observe the development of inhaled treatment related bronchial hyperreactivity. Methods Fifty‐seven patients from the BATTLE study were analyzed. Patients were randomized to receive TIS or placebo OD for 1 year. A tolerance test was performed with spirometry measurements before and after the first dose and with a bronchodilator in advance. Adverse events were strictly monitored. Results Fifty‐seven patients (100%) passed the tolerance test with no decrease in spirometry measurements or development of local intolerability. During the study treatment, a total of five TIS‐treated patients (17.8%) withdrew due to airway hyperresponsiveness after a mean of 9.2 (SD13.9) weeks and one placebo‐treated patient (3.5%) after 2 weeks (TIS vs. placebo; p = 0.66). The other TIS‐related adverse events were not clinically significant. Conclusion The use of inhaled medication is well tolerated in the heterogenous bronchiectasis population, without signs of airway hyperresponsiveness after the first dose of inhaled medication. From this observation, it can be concluded that there is no additional value for this advised tolerance test. However, closely monitoring on adverse effects during the first weeks after starting TIS is recommended.
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- 2023
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25. Neonatal admission after lithium use in pregnant women with bipolar disorders: a retrospective cohort study
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Noralie N. Schonewille, Pleun A. Terpstra, Maria E. N. van den Heuvel, Maria G. Van Pampus, Odile A. van den Heuvel, and Birit F. P. Broekman
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Lithium ,Bipolar disorder ,Adverse neonatal outcomes ,Psychiatry ,Pregnancy ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Neurophysiology and neuropsychology ,QP351-495 - Abstract
Abstract Background Lithium is the preferred treatment for pregnant women with bipolar disorders (BD), as it is most effective in preventing postpartum relapse. Although it has been prescribed during pregnancy for decades, the safety for neonates and obstetric outcomes are a topic of ongoing scientific debate as previous research has yielded contradicting outcomes. Our study aims to compare (re)admission rates and reasons for admissions in neonates born to women with bipolar disorders (BD) with and without lithium exposure. Methods A retrospective observational cohort study was conducted in a Dutch secondary hospital (two locations in Amsterdam). Women with BD who gave birth after a singleton pregnancy between January 2011 and March 2021 and their neonates were included. Outcomes were obtained by medical chart review of mothers and neonates and compared between neonates with and without lithium exposure. The primary outcome was admission to a neonatal ward with monitoring, preterm birth, small for gestational age (SGA), 5-minute Apgar scores, neonatal asphyxia, and readmission ≤ 28 days. Results We included 93 women with BD, who gave birth to 117 live-born neonates: 42 (36%) exposed and 75 (64%) non-exposed to lithium. There were no significant differences in neonatal admission with monitoring (16.7 vs. 20.0%, p = 0.844). Additionally, preterm birth (7.1 vs. 5.3%), SGA (0.0 vs. 8.0%), 5-minute Apgar scores (means 9.50 vs. 9.51), neonatal asphyxia (4.8 vs. 2.7%) and readmission (4.8 vs. 5.3%) were comparable. Overall, 18.8% of BD offspring was admitted. Women with BD had high rates of caesarean section ( 29.1%), gestational diabetes (12.8%) and hypertensive disorders of pregnancy (8.5%). Conclusions In a sample of neonates all born to women with BD using various other psychotropic drugs, exposure to lithium was not associated with greater risk of neonatal admission to a ward with monitoring compared to non-exposure to lithium, questioning the necessity for special measures after lithium exposure. However, offspring of women with BD was admitted regularly and women with BD have high obstetric risk which require clinical and scientific attention.
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- 2023
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26. Adaptive foraging of pollinators fosters gradual tipping under resource competition and rapid environmental change.
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Sjoerd Terpstra, Flávia M D Marquitti, and Vítor V Vasconcelos
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Biology (General) ,QH301-705.5 - Abstract
Plant and pollinator communities are vital for transnational food chains. Like many natural systems, they are affected by global change: rapidly deteriorating conditions threaten their numbers. Previous theoretical studies identified the potential for community-wide collapse above critical levels of environmental stressors-so-called bifurcation-induced tipping points. Fortunately, even as conditions deteriorate, individuals have some adaptive capacity, potentially increasing the boundary for a safe operating space where changes in ecological processes are reversible. Our study considers this adaptive capacity of pollinators to resource availability and identifies a new threat to disturbed pollinator communities. We model the adaptive foraging of pollinators in changing environments. Pollinator's adaptive foraging alters the dynamical responses of species, to the advantage of some-typically generalists-and the disadvantage of others, with systematic non-linear and non-monotonic effects on the abundance of particular species. We show that, in addition to the extent of environmental stress, the pace of change of environmental stress can also lead to the early collapse of both adaptive and nonadaptive pollinator communities. Specifically, perturbed communities exhibit rate-induced tipping points at stress levels within the safe boundary defined for constant stressors. With adaptive foraging, tipping is a more asynchronous collapse of species compared to nonadaptive pollinator communities, meaning that not all pollinator species reach a tipping event simultaneously. These results suggest that it is essential to consider the adaptive capacity of pollinator communities for monitoring and conservation. Both the extent and the rate of stress change relative to the ability of communities to recover are critical environmental boundaries.
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- 2024
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27. The Li-F-H Ternary System at High Pressures
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Bi, Tiange, Shamp, Andrew, Terpstra, Tyson, Hemley, Russell J., and Zurek, Eva
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Condensed Matter - Materials Science ,Condensed Matter - Superconductivity ,Physics - Chemical Physics - Abstract
Evolutionary crystal structure prediction searches have been employed to explore the ternary Li-F-H system at 300 GPa. Metastable phases were uncovered within the static lattice approximation, with LiF$_3$H$_2$, LiF$_2$H, Li$_3$F$_4$H, LiF$_4$H$_4$, Li$_2$F$_3$H and LiF$_3$H lying within 50 meV/atom of the 0 K convex hull. All of these phases contain H$_n$F$_{n+1}^-$ ($n$ = 1; 2) anions, and Li$^+$ cations. Other structural motifs such as LiF slabs, H$_3^+$ molecules, and F$^{\delta -}$ ions are present in some of the low enthalpy Li-F-H structures. The bonding within the H$_n$F$_{n+1}^-$ molecules, which may be bent or linear, symmetric or asymmetric, is analyzed. The five phases closest to the hull are insulators, while LiF$_3$H is metallic and predicted to have a vanishingly small superconducting critical temperature. This study lays the foundation for future investigations of the role of temperature and anharmonicity on the stability and properties of compounds and alloys in the Li-F-H ternary system., Comment: 11 pages, 4 figures, 1 table
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- 2020
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28. Single-particle structure in neutron-rich Sr isotopes approaching the N = 60 shape transition
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Cruz, S., Wimmer, K., Bhattacharjee, S. S., Bender, P. C., Hackman, G., Krücken, R., Ames, F., Andreoiu, C., Austin, R. A. E., Bancroft, C. S., Braid, R., Bruhn, T., Catford, W. N., Cheeseman, A., Chester, A., Cross, D. S., Diget, C. Aa., Drake, T., Garnsworthy, A. B., Kanungo, R., Knapton, A., Korten, W., Kuhn, K., Lassen, J., Laxdal, R., Marchetto, M., Matta, A., Miller, D., Moukaddam, M., Orr, N. A., Sachmpazidi, N., Sanetullaev, A., Svensson, C. E., Terpstra, N., Unsworth, C., and Voss, P. J.
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Nuclear Experiment - Abstract
Background: Neutron-rich nuclei around neutron number N = 60 show a dramatic shape transition from spherical ground states to prolate deformation in 98Sr and heavier nuclei. Purpose: The purpose of this study is to investigate the single-particle structure approaching the shape transitional region. Method: The level structures of neutron-rich 93,94,95Sr were studied via the d(94,95,96Sr,t) one-neutron stripping reactions at TRIUMF using a beam energy of 5.5 AMeV. {\gamma}-rays emitted from excited states and recoiling charged particles were detected by using the TIGRESS and SHARC arrays, respectively. States were identified by gating on the excitation energy and, if possible, the coincident {\gamma} radiation. Results: Triton angular distributions for the reactions populating states in ejectile nuclei 93,94,95Sr were compared with distorted wave Born approximation calculations to assign and revise spin and parity quantum numbers and extract spectroscopic factors. The results were compared with shell model calculations and the reverse (d,p) reactions and good agreement was obtained. Conclusions: The results for the d(94Sr,t)93Sr and d(95Sr,t)94Sr reactions are in good agreement with shell model calculations. A two level mixing analysis for the 0+ states in 94Sr suggest strong mixing of two shapes. For the d(96Sr,t)95Sr reaction the agreement with the shell model is less good. The configuration of the ground state of 96Sr is already more complex than predicted, and therefore indications for the shape transition can already be observed before N = 60., Comment: accepted for publication in PRC
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- 2020
29. Genomic profiling of post-transplant lymphoproliferative disorders using cell-free DNA
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Veltmaat, Nick, Zhong, Yujie, de Jesus, Filipe Montes, Tan, Geok Wee, Bult, Johanna A. A., Terpstra, Martijn M., Mutsaers, Pim G. N. J., Stevens, Wendy B. C., Mous, Rogier, Vermaat, Joost S. P., Chamuleau, Martine E. D., Noordzij, Walter, Verschuuren, Erik A. M., Kok, Klaas, Kluiver, Joost L., Diepstra, Arjan, Plattel, Wouter J., van den Berg, Anke, and Nijland, Marcel
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- 2023
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30. Neonatal admission after lithium use in pregnant women with bipolar disorders: a retrospective cohort study
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Schonewille, Noralie N., Terpstra, Pleun A., van den Heuvel, Maria E. N., Van Pampus, Maria G., van den Heuvel, Odile A., and Broekman, Birit F. P.
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- 2023
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31. The effect of azithromycin on sputum inflammatory markers in bronchiectasis
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Terpstra, L. C., Altenburg, J., Doodeman, H. J., Piñeros, Y. S. Sabogal, Lutter, R., Heijerman, H. G. M., and Boersma, W. G.
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- 2023
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32. The effect of azithromycin on sputum inflammatory markers in bronchiectasis
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L. C. Terpstra, J. Altenburg, H. J. Doodeman, Y. S. Sabogal Piñeros, R. Lutter, H. G. M. Heijerman, and W. G. Boersma
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Bronchiectasis ,Azithromycin (AZM) ,Inflammatory markers ,Inflammation ,Diseases of the respiratory system ,RC705-779 - Abstract
Abstract Background Long term macrolide treatment has been found beneficial in bronchiectasis (BE) -pathogical bronchial dilatation- possibly due to a combined anti-bacterial and immunomodulatory effect. The exact mechanism of inflammatory response is unknown. Here, we investigated the effect of maintenance macrolide treatment on the inflammatory response in BE. In addition, we assessed the inflammatory profile in BE in relation to disease severity. Methods During the BAT randomized controlled trial (investigating the effect of 1 year of azithromycin (AZM) in 83 BE patients), data on BE severity, lung function and sputum microbiology was collected. For the current study, a wide range of inflammatory markers were analysed in 3- monthly sputum samples in all participants. Results At baseline, marked neutrophilic but also eosinophilic inflammation was present in both groups, which remained stable throughout the study and was not affected by AZM treatment. Significant upregulation of pro-inflammatory markers correlated with FEV1
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- 2023
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33. A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat
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Nap Jan-Peter, Breitling Rainer, de Haan Gerald, Bystrykh Leonid V, Hardonk Menno, Terpstra Peter, Alberts Rudi, and Jansen Ritsert C
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Computer applications to medicine. Medical informatics ,R858-859.7 ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background The Affymetrix GeneChip technology uses multiple probes per gene to measure its expression level. Individual probe signals can vary widely, which hampers proper interpretation. This variation can be caused by probes that do not properly match their target gene or that match multiple genes. To determine the accuracy of Affymetrix arrays, we developed an extensive verification protocol, for mouse arrays incorporating the NCBI RefSeq, NCBI UniGene Unique, NIA Mouse Gene Index, and UCSC mouse genome databases. Results Applying this protocol to Affymetrix Mouse Genome arrays (the earlier U74Av2 and the newer 430 2.0 array), the number of sequence-verified probes with perfect matches was no less than 85% and 95%, respectively; and for 74% and 85% of the probe sets all probes were sequence verified. The latter percentages increased to 80% and 94% after discarding one or two unverifiable probes per probe set, and even further to 84% and 97% when, in addition, allowing for one or two mismatches between probe and target gene. Similar results were obtained for other mouse arrays, as well as for human and rat arrays. Based on these data, refined chip definition files for all arrays are provided online. Researchers can choose the version appropriate for their study to (re)analyze expression data. Conclusion The accuracy of Affymetrix probe sequences is higher than previously reported, particularly on newer arrays. Yet, refined probe set definitions have clear effects on the detection of differentially expressed genes. We demonstrate that the interpretation of the results of Affymetrix arrays is improved when the new chip definition files are used.
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- 2007
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34. Successful implementation of a quality improvement bundle to reduce opioid overprescribing following total hip and knee arthroplasty
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Daniel Cohen, Caroline Jones, Samuel Yoon, Sarah Ward, Vivian Law, Bokman Chan, Shawna Singh, Angelo Papachristos, Elizabeth Logan, Priscilla Rubio-Reyes, and Kristen Terpstra
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Medicine (General) ,R5-920 - Abstract
Background Opioid overprescribing is commonplace after total hip (THA) and total knee arthroplasty (TKA). Preliminary data demonstrated that approximately 32% of the opioids prescribed at discharge from our hospital following THA and TKA remain unused. This is a concern given that unused prescribed opioids are available for diversion and may result in misuse and abuse.Methods Pre-intervention data were collected between 1 November 2018 and 10 December 2018. An intervention bundle was then introduced, including education of patients and providers, a standardised pain management algorithm and an autopopulated discharge prescription. The aim of this quality improvement initiative was to reduce the amount of opioid (average oral morphine equivalents (OME)) dispensed (based on the discharge prescription provided) following THA and TKA at our institution by 15% by 1 April 2019.Design Using an interrupted time series design, the outcome measure was the amount of opioid (OME) dispensed from the discharge prescription provided. Process measures included the percentage of autopopulated discharge prescriptions, the percentage of patients receiving education at discharge and the percentage of nurses and residents receiving standardised education. Balancing measures included patient satisfaction with postoperative pain management, and the percentage of patients filling the second half of the part-fill or requiring a subsequent opioid prescription.Results With 600 patients identified, mean OME dispensed at discharge was reduced by 26.3% (from 522.2 to 384.9 mg) after our interventions started. Utilisation of autopopulated part-fill prescriptions was 95.8%. There was no change in patient satisfaction nor in the proportion of patients requiring an additional opioid prescription post-intervention. Only 39% of patients filled the second half of the part-fill prescription post-intervention.Conclusions Mean OME dispensed at discharge per patient was reduced with no change in patient satisfaction after introduction of the intervention bundle.
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- 2023
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35. Single-Particle Structure of Neutron-Rich Sr Isotopes Via d( 94,95,96 Sr, p) Reactions
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Cruz, S., Wimmer, K., Bender, P. C., Krücken, R., Hackman, G., Ames, F., Andreoiu, C., Austin, R. A. E., Bancroft, C. S., Braid, R., Bruhn, T., Catford, W. N., Cheeseman, A., Chester, A., Cross, D. S., Diget, C. Aa., Drake, T., Garnsworthy, A. B., Kanungo, R., Knapton, A., Korten, W., Kuhn, K., Lassen, J., Laxdal, R., Marchetto, M., Matta, A., Miller, D., Moukaddam, M., Orr, N. A., Sachmpazidi, N., Sanetullaev, A., Svensson, C. E., Terpstra, N., Unsworth, C., and Voss, P. J.
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Nuclear Experiment - Abstract
The region around neutron number N = 60 in the neutron-rich Sr and Zr nuclei is one of the most dramatic examples of a ground state shape transition from (near) spherical below N = 60 to strongly deformed shapes in the heavier isotopes. The single-particle structure of 95-97Sr approaching the ground state shape transition at 98 Sr has been investigated via single-neutron transfer reactions using the (d, p) reaction in inverse kinematics. These reactions selectively populate states with a large overlap of the projectile ground state coupled to a neutron in a single-particle orbital. Radioactive 94,95,96Sr nuclei with energies of 5.5 AMeV were used to bombard a CD 2 target. Recoiling light charged particles and {\gamma} rays were detected using a quasi-4{\pi} silicon strip detector array and a 12 element Ge array. The excitation energy of states populated was reconstructed employing the missing mass method combined with {\gamma}-ray tagging and differential cross sections for final states were extracted. A reaction model analysis of the angular distributions allowed for firm spin assignments to be made for the low-lying 352, 556 and 681 keV excited states in 95Sr and a constraint has been placed on the spin of the higher-lying 1666 keV state. Angular distributions have been extracted for 10 states populated in the d(95Sr,p)96Sr reaction, and constraints have been provided for the spins and parities of several final states. Results are compared to shell model calculations in several model spaces and the structure of low-lying states in 94Sr and 95Sr is well-described. The spectroscopic strength of the 0+ and 2 states in 96Sr is significantly more fragmented than predicted., Comment: PRC accepted
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- 2019
36. Effects of long-term tobramycin inhalation solution (TIS) once daily on exacerbation rate in patients with non-cystic fibrosis bronchiectasis
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Lotte C. Terpstra, Josje Altenburg, Inez Bronsveld, Martijn D. de Kruif, Yvonne Berk, Dominic Snijders, Wouter Rozemeijer, Harry G. M. Heijerman, and Wim G. Boersma
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Bronchiectasis ,Tobramycin inhalation solution ,Exacerbations ,Diseases of the respiratory system ,RC705-779 - Abstract
Abstract Background Use of long-term tobramycin inhalation solution (TIS) has been shown beneficial in cystic fibrosis (CF) and earlier findings also suggest a benefit in non-CF bronchiectasis. We investigated the efficacy and safety of maintenance TIS once daily (OD) in frequent exacerbating bronchiectasis patients chronically infected by different pathogens sensitive for tobramycin. Objective The primary outcome was the frequency of exacerbations during the 12-month study period. Secondary outcomes were time to first exacerbation, change in lung function and quality of life (QoL), bacterial analysis and safety. Materials/patients In this multicenter RCT patients aged ≥ 18-year-old were included with confirmed bronchiectasis and ≥ 2 exacerbations in the preceding year. Patients were assigned (1:1) to receive TIS or placebo OD for 1-year. Results 58 patients were included of which 52 were analyzed in the mITT analysis. TIS reduced exacerbation frequency with a RR of 0.74 (95% CI 0.49–1.14) (p = 0.15). Within the TIS population a decrease in number of exacerbations was found (2; p = 0.00), which was also seen in the placebo-treated patients (1.5; p = 0.00). In the TIS-treated patients the QoL improved (LRTI-VAS p = 0.02 Leicester Cough p = 0.02) without additional safety concerns. No differences were found for the other secondary outcomes. Conclusion Long-term TIS OD is a safe treatment modality and showed a non-significant reduced exacerbation frequency of 0.74 as compared to placebo in bronchiectasis patients chronically infected by tobramycin sensitive pathogens. TIS OD may be a potential therapeutic strategy in selected patients with bronchiectasis suffering from a high burden of disease. Trail registration number: The BATTLE study was registered at Clinical trials.gov number: NCT02657473 . Date: 13 august 2016.
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- 2022
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37. Cardiovascular and metabolic health is associated with functional brain connectivity in middle-aged and older adults: Results from the Human Connectome Project-Aging study
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Barnaly Rashid, Matthew F. Glasser, Thomas Nichols, David Van Essen, Meher R. Juttukonda, Nadine A. Schwab, Douglas N Greve, Essa Yacoub, Allison Lovely, Melissa Terpstra, Michael P. Harms, Susan Y. Bookheimer, Beau M. Ances, David H. Salat, and Steven E. Arnold
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Resting-state fMRI ,Cardiovascular risk ,Functional connectivity ,Aging ,Alzheimer's disease ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Several cardiovascular and metabolic indicators, such as cholesterol and blood pressure have been associated with altered neural and cognitive health as well as increased risk of dementia and Alzheimer's disease in later life. In this cross-sectional study, we examined how an aggregate index of cardiovascular and metabolic risk factor measures was associated with correlation-based estimates of resting-state functional connectivity (FC) across a broad adult age-span (36–90+ years) from 930 volunteers in the Human Connectome Project Aging (HCP-A). Increased (i.e., worse) aggregate cardiometabolic scores were associated with reduced FC globally, with especially strong effects in insular, medial frontal, medial parietal, and superior temporal regions. Additionally, at the network-level, FC between core brain networks, such as default-mode and cingulo-opercular, as well as dorsal attention networks, showed strong effects of cardiometabolic risk. These findings highlight the lifespan impact of cardiovascular and metabolic health on whole-brain functional integrity and how these conditions may disrupt higher-order network integrity.
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- 2023
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38. Surgical denervation as a treatment strategy for pain in hand osteoarthritis: a systematic literature review
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Féline P B Kroon, Margreet Kloppenburg, Frits R Rosendaal, Lotte A van de Stadt, Marco J P F Ritt, Anne J H Vochteloo, Coen van der Meulen, Aniek Claassen, and Sietse E S Terpstra
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Medicine - Abstract
Objective Surgical denervation has been proposed as a treatment for pain in hand osteoarthritis (OA). This review aimed to summarise the available evidence and to propose a research agenda.Methods A systematic literature search was performed up to September 2022. Two investigators independently identified studies that reported on denervation for OA of the proximal interphalangeal, distal interphalangeal, metacarpophalangeal or carpometacarpal joints. Quality of studies was assessed and study characteristics, patient characteristics, details of the surgical technique and outcomes of the surgery were extracted.Results Of 169 references, 17 articles reporting on 384 denervations in 351 patients were selected. Sixteen case series reported positive outcomes with respect to pain, function and patient satisfaction. One non-randomised clinical trial reported no difference in outcome when comparing denervation of the first carpometacarpal (CMC I) joint to trapeziectomy. Adverse events were frequent, with sensory abnormalities occurring the most, followed by the need for revision surgery. All studies had significant risk of bias.Conclusion Surgical denervation for pain in hand OA shows some promise, but the available evidence does not allow any conclusions of efficacy and higher-quality research is needed. Techniques should be harmonised and more data regarding how denervation compares to current usual care, other denervation methods or placebo in terms of outcomes and adverse events are needed.
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- 2023
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39. Associations between age, sex, APOE genotype, and regional vascular physiology in typically aging adults
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Nikou L. Damestani, John Jacoby, Shrikanth M. Yadav, Allison E. Lovely, Aurea Michael, Melissa Terpstra, Marziye Eshghi, Barnaly Rashid, Carlos Cruchaga, David H. Salat, and Meher R. Juttukonda
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Perfusion MRI ,Aging ,Arterial spin labeling ,Healthy aging ,APOE ,Sex differences ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Altered blood flow in the human brain is characteristic of typical aging. However, numerous factors contribute to inter-individual variation in patterns of blood flow throughout the lifespan. To better understand the mechanisms behind such variation, we studied how sex and APOE genotype, a primary genetic risk factor for Alzheimer's disease (AD), influence associations between age and brain perfusion measures. We conducted a cross-sectional study of 562 participants from the Human Connectome Project - Aging (36 to >90 years of age). We found widespread associations between age and vascular parameters, where increasing age was associated with regional decreases in cerebral blood flow (CBF) and increases in arterial transit time (ATT). When grouped by sex and APOE genotype, interactions between group and age demonstrated that females had relatively greater CBF and lower ATT compared to males. Females carrying the APOE ε4 allele showed the strongest association between CBF decline and ATT incline with age. This demonstrates that sex and genetic risk for AD modulate age-associated patterns of cerebral perfusion measures.
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- 2023
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40. When Text and Speech are Not Enough: A Multimodal Dataset of Collaboration in a Situated Task
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Ibrahim Khebour, Richard Brutti, Indrani Dey, Rachel Dickler, Kelsey Sikes, Kenneth Lai, Mariah Bradford, Brittany Cates, Paige Hansen, Changsoo Jung, Brett Wisniewski, Corbyn Terpstra, Leanne Hirshfield, Sadhana Puntambekar, Nathaniel Blanchard, James Pustejovsky, and Nikhil Krishnaswamy
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multimodal interaction ,collaboration ,problem solving ,situated tasks ,History of scholarship and learning. The humanities ,AZ20-999 ,Language and Literature - Abstract
To adequately model information exchanged in real human-human interactions, considering speech or text alone leaves out many critical modalities. The channels contributing to the “making of sense” in human-human interactions include but are not limited to gesture, speech, user-interaction modeling, gaze, joint attention, and involvement/engagement, all of which need to be adequately modeled to automatically extract correct and meaningful information. In this paper, we present a multimodal dataset of a novel situated and shared collaborative task, with the above channels annotated to encode these different aspects of the situated and embodied involvement of the participants in the joint activity.
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- 2024
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41. Shape Coexistence and Mixing of Low-Lying $0^+$ States in $^{96}$Sr
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Cruz, S., Bender, P. C., Krücken, R., Wimmer, K., Ames, F., Andreoiu, C., Austin, R. A. E., Bancroft, C. S., Braid, R., Bruhn, T., Catford, W. N., Cheeseman, A., Chester, A., Cross, D. S., Diget, C. Aa., Drake, T., Garnsworthy, A. B., Hackman, G., Kanungo, R., Knapton, A., Korten, W., Kuhn, K., Lassen, J., Laxdal, R., Marchetto, M., Matta, A., Miller, D., Moukaddam, M., Orr, N. A., Sachmpazidi, N., Sanetullaev, A., Svensson, C. E., Terpstra, N., Unsworth, C., and Voss, P. J.
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Nuclear Experiment ,Nuclear Theory - Abstract
The low energy excited $0_{2,3}^+$ states in $^{96}$Sr are amongst the most prominent examples of shape coexistence across the nuclear landscape. In this work, the neutron $[2s_{1/2}]^2$ content of the $0_{1,2,3}^+$ states in $^{96}$Sr was determined by means of the d($^{95}$Sr,p) transfer reaction at the TRIUMF-ISAC2 facility using the SHARC and TIGRESS arrays. Spectroscopic factors of 0.19(3) and 0.22(3) were extracted for the $^{96}$Sr ground and 1229~keV $0^+$ states, respectively, by fitting the experimental angular distributions to DWBA reaction model calculations. A detailed analysis of the $\gamma$-decay of the isomeric $0_3^+$ state was used to determine a spectroscopic factor of 0.33(13). The experimental results are compared to shell model calculations, which predict negligible spectroscopic strength for the excited $0^+$ states in $^{96}$Sr. The strengths of the excited $0_{2,3}^+$ states were also analyzed within a two-level mixing model and are consistent with a mixing strength of $a^2$=0.40(14) and a difference in intrinsic deformations of $|\Delta \beta|=0.31(3)$. These results suggest coexistence of three different configurations in $^{96}$Sr and strong shape mixing of the two excited $0^+$ states., Comment: Phys Lett B accepted
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- 2018
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42. The Search for Superconductivity in High Pressure Hydrides
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Bi, Tiange, Zarifi, Niloofar, Terpstra, Tyson, and Zurek, Eva
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Condensed Matter - Superconductivity ,Condensed Matter - Materials Science - Abstract
The computational and experimental exploration of the phase diagrams of binary hydrides under high pressure has uncovered phases with novel stoichiometries and structures, some which are superconducting at quite high temperatures. Herein we review the plethora of studies that have been undertaken in the last decade on the main group and transition metal hydrides, as well as a few of the rare earth hydrides at pressures attainable in diamond anvil cells. The aggregate of data shows that the propensity for superconductivity is dependent upon the species used to "dope" hydrogen, with some of the highest values obtained for elements that belong to the alkaline and rare earth, or the pnictogen and chalcogen families., Comment: 73 pages, 18 figures, and 1 table
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- 2018
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43. The Lifespan Human Connectome Project in Aging: An overview
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Bookheimer, Susan Y, Salat, David H, Terpstra, Melissa, Ances, Beau M, Barch, Deanna M, Buckner, Randy L, Burgess, Gregory C, Curtiss, Sandra W, Diaz-Santos, Mirella, Elam, Jennifer Stine, Fischl, Bruce, Greve, Douglas N, Hagy, Hannah A, Harms, Michael P, Hatch, Olivia M, Hedden, Trey, Hodge, Cynthia, Japardi, Kevin C, Kuhn, Taylor P, Ly, Timothy K, Smith, Stephen M, Somerville, Leah H, Uğurbil, Kâmil, van der Kouwe, Andre, Van Essen, David, Woods, Roger P, and Yacoub, Essa
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Behavioral and Social Science ,Bioengineering ,Biomedical Imaging ,Neurosciences ,Aging ,Clinical Research ,Mental Health ,Basic Behavioral and Social Science ,Brain Disorders ,Underpinning research ,1.1 Normal biological development and functioning ,Mental health ,Neurological ,Adult ,Aged ,Aged ,80 and over ,Brain ,Connectome ,Female ,Humans ,Longevity ,Male ,Middle Aged ,Models ,Neurological ,Multimodal Imaging ,Nerve Net ,Neuroimaging ,Research Design ,MRI ,Connectivity ,Connectomics ,fMRI ,Diffusion imaging ,Morphometry ,Functional connectivity ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Neurology & Neurosurgery - Abstract
The original Human Connectome Project yielded a rich data set on structural and functional connectivity in a large sample of healthy young adults using improved methods of data acquisition, analysis, and sharing. More recent efforts are extending this approach to include infants, children, older adults, and brain disorders. This paper introduces and describes the Human Connectome Project in Aging (HCP-A), which is currently recruiting 1200 + healthy adults aged 36 to 100+, with a subset of 600 + participants returning for longitudinal assessment. Four acquisition sites using matched Siemens Prisma 3T MRI scanners with centralized quality control and data analysis are enrolling participants. Data are acquired across multimodal imaging and behavioral domains with a focus on factors known to be altered in advanced aging. MRI acquisitions include structural (whole brain and high resolution hippocampal) plus multiband resting state functional (rfMRI), task fMRI (tfMRI), diffusion MRI (dMRI), and arterial spin labeling (ASL). Behavioral characterization includes cognitive (such as processing speed and episodic memory), psychiatric, metabolic, and socioeconomic measures as well as assessment of systemic health (with a focus on menopause via hormonal assays). This dataset will provide a unique resource for examining how brain organization and connectivity changes across typical aging, and how these differences relate to key characteristics of aging including alterations in hormonal status and declining memory and general cognition. A primary goal of the HCP-A is to make these data freely available to the scientific community, supported by the Connectome Coordination Facility (CCF) platform for data quality assurance, preprocessing and basic analysis, and shared via the NIMH Data Archive (NDA). Here we provide the rationale for our study design and sufficient details of the resource for scientists to plan future analyses of these data. A companion paper describes the related Human Connectome Project in Development (HCP-D, Somerville et al., 2018), and the image acquisition protocol common to both studies (Harms et al., 2018).
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- 2019
44. Evaluation of a seven gene mutational profile as a prognostic factor in a population-based study of clear cell renal cell carcinoma
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Jeroen A. A. van de Pol, Paranita Ferronika, Helga Westers, Manon van Engeland, Martijn M. Terpstra, Kim M. Smits, Kim de Lange, Piet A. van den Brandt, Rolf H. Sijmons, Leo J. Schouten, and Klaas Kok
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Medicine ,Science - Abstract
Abstract In this study, we investigate the influence of the seven genes (VHL, PBRM1, SETD2, BAP1, KDM5C, MTOR and TP53) most frequently mutated in clear cell renal cell cancer (ccRCC) on cancer-specific survival (CSS) in the prospective Netherlands Cohort Study on diet and cancer. DNA isolated from routinely archived formalin-fixed paraffin-embedded tumour blocks from 252 incident ccRCC cases was available for targeted next generation sequencing. Based on the sequencing quality and the completeness of information on clinical characteristics and follow-up, we could use 110 cases for survival analysis. The association with CSS for each mutated gene in these cases was tested using multivariable Cox proportional hazards models to estimate hazards ratios (HR) and confidence intervals (CIs), and we observed mutations in one or more of the seven genes in 64 out of 110 cases (58%). In the multivariable-adjusted analyses, mutations in VHL and PBRM1 were associated with better CSS (HRs (95% CI) 0.34 (0.13‒0.89) and 0.17 (0.04–0.66), respectively), although these results were not statistically significant after multiple testing correction. No association was observed for the other five genes, which may be attributable to limited power.
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- 2022
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45. Pentadentate and Hexadentate Pyridinophane Ligands Support Reversible Cu(II)/Cu(I) Redox Couples
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Glenn Blade, Andrew J. Wessel, Karna Terpstra, and Liviu M. Mirica
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bioinorganic chemistry ,pyridinophane ligands ,copper(II) complexes ,copper(I) complexes ,cyclic voltammetry ,radiolabeling ,Inorganic chemistry ,QD146-197 - Abstract
Two new ligands were synthesized with the goal of copper stabilization, N,N′-(2-methylpyridine)-2,11-diaza[3,3](2,6)pyridinophane (PicN4) and N-(methyl),N′-(2-methylpyridine)-2,11-diaza[3,3](2,6)pyridinophane (PicMeN4), by selective functionalization of HN4 and TsHN4. These two ligands, when reacted with various copper salts, generated both Cu(II) and Cu(I) complexes. These ligands and Cu complexes were characterized by various methods, such as NMR, UV-Vis, MS, and EA. Each compound was also examined electrochemically, and each revealed reversible Cu(II)/Cu(I) redox couples. Additionally, stability constants were determined via spectrophotometric titrations, and radiolabeling and cytotoxicity experiments were performed to assess the chelators relevance to their potential use in vivo as 64Cu PET imaging agents.
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- 2023
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46. 'Een rivier van misstanden'
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Terpstra, Jenda
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- 2023
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47. Urine and vaginal microbiota compositions of postmenopausal and premenopausal women differ regardless of recurrent urinary tract infection and renal transplant status
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Floor Hugenholtz, Charlotte van der Veer, Matty L. Terpstra, Hanneke Borgdorff, Robin van Houdt, Sylvia Bruisten, Suzanne E. Geerlings, and Janneke H. H. M. van de Wijgert
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Medicine ,Science - Abstract
Abstract Postmenopausal women and renal transplant recipients are at increased risk of recurrent urinary tract infections (RUTI). Urine and vaginal microbiota of premenopausal controls (N = 18) and RUTI cases (18), and of postmenopausal controls (30) and RUTI cases (20) with and without a renal transplant, were characterized using 16S rRNA sequencing. Participants did not have UTI symptoms at the time of sampling. Gram-negative uropathobionts (predominantly Escherichia/Shigella, Pseudomonas, Klebsiella, and Acinetobacter) had a much higher mean relative abundance in urine than vaginal samples, especially in premenopausal women. No statistically significant differences in mean relative abundances of bacterial groups were found within the premenopausal group or within the postmenopausal group by RUTI or renal transplant status without chronic antibiotic use. Comparing postmenopausal to premenopausal women, mean relative abundances of lactobacilli (especially L. crispatus) in urine and vaginal samples and of Gram-negative uropathobionts in urine were lower, and of BV-anaerobes and Gram-positive uropathobionts in urine and vaginal samples were higher. While RUTI in premenopausal women is predominantly caused by Escherichia, the causative organisms in postmenopausal women are likely more diverse. The relative importance of individual organisms is currently unknown. We recommend that future studies, including intervention studies, include longitudinal microbiota assessments.
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- 2022
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48. Targeted next-generation sequencing has incremental value in the diagnostic work-up of patients with suspect pancreatic masses; a multi-center prospective cross sectional study.
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Friso B Achterberg, Babs G Sibinga Mulder, Quisette P Janssen, Bas Groot Koerkamp, Lieke Hol, Rutger Quispel, Bert A Bonsing, Alexander L Vahrmeijer, Casper H J van Eijck, Daphne Roos, Lars E Perk, Erwin van der Harst, Peter-Paul L O Coene, Michail Doukas, Frank M M Smedts, Mike Kliffen, Marie-Louise F van Velthuysen, Valeska Terpstra, Arantza Farina Sarasqueta, Hans Morreau, and J Sven D Mieog
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Medicine ,Science - Abstract
BackgroundThe diagnostic process of patients with suspect pancreatic lesions is often lengthy and prone to repeated diagnostic procedures due to inconclusive results. Targeted Next-Generation Sequencing (NGS) performed on cytological material obtained with fine needle aspiration (FNA) or biliary duct brushing can speed up this process. Here, we study the incremental value of NGS for establishing the correct diagnosis, and subsequent treatment plan in patients with inconclusive diagnosis after regular diagnostic work-up for suspect pancreatic lesions.MethodsIn this prospective cross-sectional cohort study, patients were screened for inclusion in four hospitals. NGS was performed with AmpliSeq Cancer Hotspot Panel v2 and v4b in patients with inconclusive cytology results or with an uncertain diagnosis. Diagnostic results were evaluated by the oncology pancreatic multidisciplinary team. The added value of NGS was determined by comparing diagnosis (malignancy, cystic lesion or benign condition) and proposed treatment plan (exploration/resection, neoadjuvant chemotherapy, follow-up, palliation or repeated FNA) before and after integration of NGS results. Final histopathological analysis or a 6-month follow-up period were used as the reference standard in case of surgical intervention or non-invasive treatment, respectively.ResultsIn 50 of the 53 included patients, cytology material was sufficient for NGS analysis. Diagnosis before and after integration of NGS results differed in 24% of the patients. The treatment plan was changed in 32% and the diagnosis was substantiated by the NGS data in 44%. Repetition of FNA/brushing was prevented in 14% of patients. All changes in treatment plan were correctly made after integration of NGS. Integration of NGS increased overall diagnostic accuracy from 68% to 94%.InterpretationThis study demonstrates the incremental diagnostic value of NGS in patients with an initial inconclusive diagnosis. Integration of NGS results can prevent repeated EUS/FNA, and can also rigorously change the final diagnosis and treatment plan.
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- 2023
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49. Extending the Human Connectome Project across ages: Imaging protocols for the Lifespan Development and Aging projects
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Harms, Michael P, Somerville, Leah H, Ances, Beau M, Andersson, Jesper, Barch, Deanna M, Bastiani, Matteo, Bookheimer, Susan Y, Brown, Timothy B, Buckner, Randy L, Burgess, Gregory C, Coalson, Timothy S, Chappell, Michael A, Dapretto, Mirella, Douaud, Gwenaëlle, Fischl, Bruce, Glasser, Matthew F, Greve, Douglas N, Hodge, Cynthia, Jamison, Keith W, Jbabdi, Saad, Kandala, Sridhar, Li, Xiufeng, Mair, Ross W, Mangia, Silvia, Marcus, Daniel, Mascali, Daniele, Moeller, Steen, Nichols, Thomas E, Robinson, Emma C, Salat, David H, Smith, Stephen M, Sotiropoulos, Stamatios N, Terpstra, Melissa, Thomas, Kathleen M, Tisdall, M Dylan, Ugurbil, Kamil, van der Kouwe, Andre, Woods, Roger P, Zöllei, Lilla, Van Essen, David C, and Yacoub, Essa
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Basic Behavioral and Social Science ,Aging ,Biomedical Imaging ,Behavioral and Social Science ,Neurosciences ,Clinical Research ,Adolescent ,Adult ,Aged ,Aged ,80 and over ,Brain ,Child ,Child ,Preschool ,Connectome ,Female ,Humans ,Longevity ,Magnetic Resonance Imaging ,Male ,Middle Aged ,Young Adult ,Connectomics ,Resting-state ,Functional connectivity ,Task ,Diffusion ,Perfusion ,Development ,Lifespan ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Neurology & Neurosurgery - Abstract
The Human Connectome Projects in Development (HCP-D) and Aging (HCP-A) are two large-scale brain imaging studies that will extend the recently completed HCP Young-Adult (HCP-YA) project to nearly the full lifespan, collecting structural, resting-state fMRI, task-fMRI, diffusion, and perfusion MRI in participants from 5 to 100+ years of age. HCP-D is enrolling 1300+ healthy children, adolescents, and young adults (ages 5-21), and HCP-A is enrolling 1200+ healthy adults (ages 36-100+), with each study collecting longitudinal data in a subset of individuals at particular age ranges. The imaging protocols of the HCP-D and HCP-A studies are very similar, differing primarily in the selection of different task-fMRI paradigms. We strove to harmonize the imaging protocol to the greatest extent feasible with the completed HCP-YA (1200+ participants, aged 22-35), but some imaging-related changes were motivated or necessitated by hardware changes, the need to reduce the total amount of scanning per participant, and/or the additional challenges of working with young and elderly populations. Here, we provide an overview of the common HCP-D/A imaging protocol including data and rationales for protocol decisions and changes relative to HCP-YA. The result will be a large, rich, multi-modal, and freely available set of consistently acquired data for use by the scientific community to investigate and define normative developmental and aging related changes in the healthy human brain.
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- 2018
50. Urine and vaginal microbiota compositions of postmenopausal and premenopausal women differ regardless of recurrent urinary tract infection and renal transplant status
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Hugenholtz, Floor, van der Veer, Charlotte, Terpstra, Matty L., Borgdorff, Hanneke, van Houdt, Robin, Bruisten, Sylvia, Geerlings, Suzanne E., and van de Wijgert, Janneke H. H. M.
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- 2022
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